RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13182
         (194 letters)



>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 134

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 46  SARLYGKTPLIMSEKDVDRDFVPIR---QLNKDYVDKTVWVRGRLHTSRAKGKQ-CFVVI 101
           +   YGK PLI S          ++          DK V  R R+H +R +G    F+ +
Sbjct: 1   AKDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTL 60

Query: 102 REQNFTIQGILSVG--DTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLP 152
           R+Q   IQG++      T+SK M+K+   +  ESI+ ++  V+     ++S  
Sbjct: 61  RQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113


>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
           {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 103

 Score = 48.9 bits (116), Expect = 9e-09
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 71  QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
           ++ ++   + V V G +   +  G   F+ IR+++  +Q        V  ++ K + ++ 
Sbjct: 9   EITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKK-VDPELFKLIPKLR 67

Query: 131 KESILDIQAHVQATPT 146
            E ++ ++  V  TP 
Sbjct: 68  SEDVVAVEGVVNFTPK 83


>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
           thermophilus, AspRS-2 [TaxId: 274]}
          Length = 93

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 67  VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYV 126
           V +R L K +V + V + G LH  R  G+  F+++R+++  +Q +         +    V
Sbjct: 3   VLVRDL-KAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRV 61

Query: 127 SQIPKES 133
             +  E+
Sbjct: 62  RGLVVEN 68


>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
           {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 43.9 bits (103), Expect = 7e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 71  QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
           QL   +V + V + G ++  R  G   F+ +R++   +Q      D      +K  S++ 
Sbjct: 8   QLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQ---VFFDPDRADALKLASELR 64

Query: 131 KESILDIQAHVQATPT 146
            E  + +   V+A   
Sbjct: 65  NEFCIQVTGTVRARDE 80


>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-1 [TaxId: 274]}
          Length = 104

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 71  QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
            L + +V + V + G ++  R  G   F+ +R++     G++ +    +        ++ 
Sbjct: 9   SLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDRE----GLVQLVAHPASPAYATAERVR 64

Query: 131 KESILDIQAHVQATPTIVESLP 152
            E ++  +  V+  P     L 
Sbjct: 65  PEWVVRAKGLVRLRPEPNPRLA 86


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 28.1 bits (63), Expect = 0.55
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 4   EAQKVSKKALKKQAKEQEKKEKKDQRK 30
           +AQ  ++K + K+ K + K+E +   K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLK 136


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 27.4 bits (61), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 4   EAQKVSKKALKKQAKEQEKKEKKDQRK 30
           + QK  KK L  Q K+Q + E++   +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128


>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL,
           C-terminal domain {Pelobacter acidigallici [TaxId:
           35816]}
          Length = 79

 Score = 23.5 bits (50), Expect = 8.7
 Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 104 QNFTIQGILSVGDTVSKQMIKYV--SQIPKESILDIQAHVQATPTIVESLPMSILSVGDT 161
           +N+   GIL  GD      +      +    +  +     +          + I + G +
Sbjct: 1   KNYVTAGILVQGDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNGEYTVEIDADGKS 60

Query: 162 VSKQMI 167
            S  ++
Sbjct: 61  YSDTVV 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 612,773
Number of extensions: 26121
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 19
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)