BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13183
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 209 bits (531), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 133/188 (70%), Gaps = 3/188 (1%)
Query: 2 FDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVN 61
FD E+ ++K+ L+ + ++ VV HTGAGIST++GIPDFRGP+GVWT+E++G+ PK +
Sbjct: 24 FDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFD 83
Query: 62 ISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 121
+F+ A PT THMA+++L G + ++VSQN+DGLH+RSG R LAELHGNM+V++C K
Sbjct: 84 TTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAK 143
Query: 122 CERQFVRKSATNSVGQKNLNIPCPY---RGFRPCRGTLHDTILDWEHNLPQKDINMGDYN 178
C+ Q+VR + ++G K C RG R CRG L DTILDWE +LP +D+ + D
Sbjct: 144 CKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEA 203
Query: 179 SSIADLSI 186
S ADLSI
Sbjct: 204 SRNADLSI 211
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 209 bits (531), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 133/188 (70%), Gaps = 3/188 (1%)
Query: 2 FDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVN 61
FD E+ ++K+ L+ + ++ VV HTGAGIST++GIPDFRGP+GVWT+E++G+ PK +
Sbjct: 24 FDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFD 83
Query: 62 ISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 121
+F+ A PT THMA+++L G + ++VSQN+DGLH+RSG R LAELHGNM+V++C K
Sbjct: 84 TTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAK 143
Query: 122 CERQFVRKSATNSVGQKNLNIPCPY---RGFRPCRGTLHDTILDWEHNLPQKDINMGDYN 178
C+ Q+VR + ++G K C RG R CRG L DTILDWE +LP +D+ + D
Sbjct: 144 CKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEA 203
Query: 179 SSIADLSI 186
S ADLSI
Sbjct: 204 SRNADLSI 211
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 34/198 (17%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 50
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 51 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAE 109
K+GI P + A P + H+ + +L +G + V++QNID LH R+G K + E
Sbjct: 62 RFAKEGIFPMLQ-----AKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIE 114
Query: 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQ 169
LHGN+ C +CE+++ + + ++ + C C + I+ + NLPQ
Sbjct: 115 LHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPL-C-----DDCNSLIRPNIVFFGENLPQ 168
Query: 170 KDINMGDYNSSIADLSII 187
+ SS A L I+
Sbjct: 169 DALREAIGLSSRASLMIV 186
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 34/198 (17%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 50
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 51 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAE 109
K+GI P + A P + H+ + +L +G + V++QNID LH R+G K + E
Sbjct: 62 RFAKEGIFPMLQ-----AKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIE 114
Query: 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQ 169
L+GN+ C +CE+++ + + ++ + C C + I+ + NLPQ
Sbjct: 115 LYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPL-C-----DDCNSLIRPNIVFFGENLPQ 168
Query: 170 KDINMGDYNSSIADLSII 187
+ SS A L I+
Sbjct: 169 DALREAIGLSSRASLMIV 186
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 34/198 (17%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 50
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 51 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAE 109
K+GI P + A P + H+ + +L +G + V++QNID LH R+G K + E
Sbjct: 62 RFAKEGIFPMLQ-----AKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIE 114
Query: 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQ 169
L GN+ C +CE+++ + + ++ + C C + I+ + NLPQ
Sbjct: 115 LAGNVEEYYCVRCEKKYTVEDVIKKLESSDVPL-C-----DDCNSLIRPNIVFFGENLPQ 168
Query: 170 KDINMGDYNSSIADLSII 187
+ SS A L I+
Sbjct: 169 DALREAIGLSSRASLMIV 186
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-------TLEKKGIK--P 58
+ +I+ +E + K+KH V+ TGAGIS +GIP FRG +G+W G K P
Sbjct: 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNP 60
Query: 59 KVNISFDD-------AVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH 111
+ F A P H AI EL G V V++QNID LH R+G SR+ L ELH
Sbjct: 61 RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-SRRVL-ELH 118
Query: 112 GNMYVDQCNKCERQF 126
G+M C C +
Sbjct: 119 GSMDKLDCLDCHETY 133
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 21/131 (16%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 60
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 61 NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
F+ A P H A EL G + +++QN+DGLH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDGLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 121 KCERQFVRKSA 131
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD---------------- 65
+ VV+ GAGIST +GIPDFR P +G+++ ++ P F+
Sbjct: 23 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 82
Query: 66 -----DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
+ P VTH + L ++G + + +QNIDGL SG+ L E HG C
Sbjct: 83 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 142
Query: 121 KCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNS 179
C+R F + V +P CP C G + I+ + LPQ+ + + +
Sbjct: 143 VCQRPFPGEDIRADVMAD--RVPRCPV-----CTGVVKPDIVFFGEPLPQRFL-LHVVDF 194
Query: 180 SIADLSII 187
+ADL +I
Sbjct: 195 PMADLLLI 202
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD---------------- 65
+ VV+ GAGIST +GIPDFR P +G+++ ++ P F+
Sbjct: 24 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 83
Query: 66 -----DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
+ P VTH + L ++G + + +QNIDGL SG+ L E HG C
Sbjct: 84 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 143
Query: 121 KCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNS 179
C+R F + V +P CP C G + I+ + LPQ+ + + +
Sbjct: 144 VCQRPFPGEDIRADVMAD--RVPRCPV-----CTGVVKPDIVFFGEPLPQRFL-LHVVDF 195
Query: 180 SIADLSII 187
+ADL +I
Sbjct: 196 PMADLLLI 203
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD---------------- 65
+ VV+ GAGIST +GIPDFR P +G+++ ++ P F+
Sbjct: 17 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 76
Query: 66 -----DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
+ P VTH + L ++G + + +QNIDGL SG+ L E HG C
Sbjct: 77 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 136
Query: 121 KCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNS 179
C+R F + V +P CP C G + I+ + LPQ+ + + +
Sbjct: 137 VCQRPFPGEDIRADVMAD--RVPRCPV-----CTGVVKPDIVFFGEPLPQRFL-LHVVDF 188
Query: 180 SIADLSII 187
+ADL +I
Sbjct: 189 PMADLLLI 196
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVN 61
S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 7 SSXADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLA 59
Query: 62 ISFDDA----------------VPTVTHMAILE----LVNQGKVHYVVSQNIDGLHLRSG 101
+ + + P H AI E L QG+ V++QNID LH ++G
Sbjct: 60 FAHNPSRVWEFYHYRREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG 119
Query: 102 LSRKYLAELHGNMYVDQCNKC 122
K L E+HG+++ +C C
Sbjct: 120 T--KNLLEIHGSLFKTRCTSC 138
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 60
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 61 NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 121 KCERQFVRKSA 131
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 60
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 61 NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 121 KCERQFVRKSA 131
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 60
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 20 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 79
Query: 61 NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 80 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 136
Query: 121 KCERQFVRKSA 131
C F +SA
Sbjct: 137 SCNNSFEVESA 147
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVN 61
S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 9 SSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLA 61
Query: 62 ISFDDA----------------VPTVTHMAILE----LVNQGKVHYVVSQNIDGLHLRSG 101
+ + + P H AI E L QG+ V++QNID LH ++G
Sbjct: 62 FAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG 121
Query: 102 LSRKYLAELHGNMYVDQCNKC 122
K L E+HG+++ +C C
Sbjct: 122 T--KNLLEIHGSLFKTRCTSC 140
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVN 61
S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 7 SSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLA 59
Query: 62 ISFDDA----------------VPTVTHMAILE----LVNQGKVHYVVSQNIDGLHLRSG 101
+ + + P H AI E L QG+ V++QNID LH ++G
Sbjct: 60 FAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG 119
Query: 102 LSRKYLAELHGNMYVDQCNKC 122
K L E+HG+++ +C C
Sbjct: 120 T--KNLLEIHGSLFKTRCTSC 138
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVN 61
S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 3 SSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLA 55
Query: 62 ISFDDA----------------VPTVTHMAILE----LVNQGKVHYVVSQNIDGLHLRSG 101
+ + + P H AI E L QG+ V++QNID LH ++G
Sbjct: 56 FAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG 115
Query: 102 LSRKYLAELHGNMYVDQCNKC 122
K L E+HG+++ +C C
Sbjct: 116 T--KNLLEIHGSLFKTRCTSC 134
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 23/129 (17%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVNISFDDA------ 67
++ KAKH+V+ +GAG+S +G+P FRG G W + + + + + + +
Sbjct: 16 FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFY 75
Query: 68 ----------VPTVTHMAILE----LVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN 113
P H AI E L QG+ V++QNID LH ++G K L E+HG+
Sbjct: 76 HYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGS 133
Query: 114 MYVDQCNKC 122
++ +C C
Sbjct: 134 LFKTRCTSC 142
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 60
I ++K++V TGAG++ +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 61 NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 121 KCERQFVRKSA 131
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 60
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 61 NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
F+ A P + A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKANQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 121 KCERQFVRKSA 131
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 1 TFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN-------------- 46
+F K+ ++ L++ I K KHVV TG+G S + IP FRG +
Sbjct: 24 SFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGT 83
Query: 47 --GVWTLEKKGIKPKVNISFDDAVPTVT-HMAILELVNQGKVHYVVSQNIDGLHLRSGLS 103
G W +K + +IS D + H+A+ L + G + VV+QN+DGLH SG +
Sbjct: 84 IWGFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNT 143
Query: 104 RKYLAELHGNMYVDQCNKCER 124
+ + LHGN++ C C +
Sbjct: 144 K--VISLHGNVFEAVCCTCNK 162
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN----------------GVWTLEKKGIKP 58
L++ I K KHVV TG+G S + IP FRG + G W +K +
Sbjct: 13 LAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEV 72
Query: 59 KVNISFDDAVPTVT-HMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 117
+IS D + H+A+ L + G + VV+QN+DGLH SG ++ + LHGN++
Sbjct: 73 IRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTK--VISLHGNVFEA 130
Query: 118 QCNKCER 124
C C +
Sbjct: 131 VCCTCNK 137
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 20 DKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPKVNISFDDAV---------- 68
++ + V+ GAGISTSAGIPDFR P+ G++ +K P F+ +
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 69 -----------PTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 117
PT+ H + L ++G + +QNID L +GL ++ L E HG Y
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 118 QC 119
C
Sbjct: 161 HC 162
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 20 DKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPKVNISFDDAV---------- 68
++ + V+ GAGISTSAGIPDFR P+ G++ +K P F+ +
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 69 -----------PTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 117
PT+ H + L ++G + +QNID L +GL ++ L E HG Y
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 118 QC 119
C
Sbjct: 161 HC 162
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 22 AKHVVLHTGAGISTSAGIPDFRGPNGVWT-LEKKGI--------------KPKV--NISF 64
A+ +++ TGAG+STS GIPDFR G ++ ++ G+ P V NI+
Sbjct: 46 ARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFXHDPSVFYNIAN 105
Query: 65 DDAVP----TVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
P + H I L +GK+ +QNID L +G+S L + HG+ C
Sbjct: 106 XVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCV 165
Query: 121 KCERQFVRKSATNSVGQKNLNIP-CPY 146
C + N + +NL +P CPY
Sbjct: 166 TCHWNLPGERIFNKI--RNLELPLCPY 190
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 22 AKHVVLHTGAGISTSAGIPDFRGPNGVWT-LEKKGI-KPK----VNISFDDA-------- 67
A+ +++ TGAG+STS GIPDFR G ++ ++ G+ P+ NI D
Sbjct: 184 ARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIAN 243
Query: 68 -------VPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
+ + H I L +GK+ +QNID L +G+S L + HG+ C
Sbjct: 244 MVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCV 303
Query: 121 KCERQFVRKSATNSVGQKNLNIP-CPY 146
C + N + +NL +P CPY
Sbjct: 304 TCHWNLPGERIFNKI--RNLELPLCPY 328
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 34/198 (17%)
Query: 17 EWIDKAKHVVLHTGAGISTSAGIPDFRG-----------------PNGVWTLEKKGIKPK 59
+ + + K +++ TGAG+S S GIPDFR P ++ +E P+
Sbjct: 11 KLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPR 70
Query: 60 VNISFDDAV------PTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN 113
F + P++ H I +GK+ +QNID L +G+ R + + HG+
Sbjct: 71 PFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQR--IIQCHGS 128
Query: 114 MYVDQCNKCERQF----VRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQ 169
C C+ + VR N V + CP + I+ + NLP+
Sbjct: 129 FATASCLICKYKVDCEAVRGDIFNQVVPR-----CPRCPADEPLAIMKPEIVFFGENLPE 183
Query: 170 KDINMGDYNSSIADLSII 187
+ Y+ DL I+
Sbjct: 184 QFHRAMKYDKDEVDLLIV 201
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 25 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 77
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 33 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 92
Query: 78 ELVN--QGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 122
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 93 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 152
Query: 123 ERQF 126
+ +
Sbjct: 153 GKVY 156
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 25 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 77
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 23 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82
Query: 78 ELVN--QGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 122
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 142
Query: 123 ERQF 126
+ +
Sbjct: 143 GKVY 146
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 25 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 77
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 30 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 89
Query: 78 ELVN--QGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 122
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 90 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 149
Query: 123 ERQF 126
+ +
Sbjct: 150 GKVY 153
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 25 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 77
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 41 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 100
Query: 78 ELVN--QGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 122
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 101 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 160
Query: 123 ERQF 126
+ +
Sbjct: 161 GKVY 164
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 25 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 77
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 31 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 90
Query: 78 ELVN--QGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 122
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 91 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 150
Query: 123 ERQF 126
+ +
Sbjct: 151 GKVY 154
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 22/117 (18%)
Query: 25 VVLHTGAGISTSAGIPDFRGPNGVW---------TLEKKGIKPKVNISFDDA-------- 67
V++ TGAGIS +GI FR +G+W T E P++ +F +A
Sbjct: 4 VLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP 63
Query: 68 --VPTVTHMAILELVNQ-GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 121
P H+A+ +L + G +V+QNID LH R+G + + +HG + +C++
Sbjct: 64 EIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCSQ 118
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 25 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 77
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 41 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 100
Query: 78 ELVN--QGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 122
N K HY V +QN D L ++G+ + E HG+ C C
Sbjct: 101 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGC 160
Query: 123 ERQF 126
+ +
Sbjct: 161 GKVY 164
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 63 SFDDAVPTVTHMAILELVNQ 82
S +DA PT TH+A+L L+NQ
Sbjct: 140 STNDAFPTATHIAVLSLLNQ 159
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 63 SFDDAVPTVTHMAILELVNQ 82
S +DA PT TH+A+L L+NQ
Sbjct: 140 STNDAFPTATHIAVLSLLNQ 159
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 123 ERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGD 176
E +F + A+N++ +N +IP R R C G L D LD +L I++ +
Sbjct: 555 ETEFYQ--ASNNIIDENGHIPMESRKKRFCEGWLDDLFLDLYQDLKLSKISLSN 606
>pdb|2HV2|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|C Chain C, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|D Chain D, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|E Chain E, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|F Chain F, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
Length = 400
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 24 HVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI----KPKVNISF 64
H V + AGI A P++RG G+ + K+ + K KV +S+
Sbjct: 72 HGVRYPXAGIGYVASYPEYRGEGGISAIXKEXLADLAKQKVALSY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,099,234
Number of Sequences: 62578
Number of extensions: 249207
Number of successful extensions: 644
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 52
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)