Query psy13183
Match_columns 192
No_of_seqs 205 out of 1176
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:15:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 3.2E-58 7E-63 371.9 15.1 165 23-192 1-166 (206)
2 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 2.9E-57 6.2E-62 377.9 13.8 171 15-192 1-215 (260)
3 COG0846 SIR2 NAD-dependent pro 100.0 1E-56 2.2E-61 370.6 15.3 173 12-192 2-193 (250)
4 PTZ00409 Sir2 (Silent Informat 100.0 2.9E-56 6.2E-61 373.2 14.2 176 9-192 15-210 (271)
5 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.4E-55 5.3E-60 361.6 13.9 164 23-192 1-186 (235)
6 PRK14138 NAD-dependent deacety 100.0 2.7E-55 5.9E-60 363.0 14.1 172 13-192 2-189 (244)
7 PTZ00410 NAD-dependent SIR2; P 100.0 5.2E-55 1.1E-59 374.2 15.1 177 9-192 14-216 (349)
8 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 1.2E-54 2.6E-59 354.7 12.8 165 19-192 1-182 (222)
9 PRK05333 NAD-dependent deacety 100.0 5.9E-54 1.3E-58 362.4 15.6 177 9-192 6-225 (285)
10 PRK00481 NAD-dependent deacety 100.0 1.3E-53 2.9E-58 352.7 15.0 170 11-192 2-188 (242)
11 cd01411 SIR2H SIR2H: Uncharact 100.0 2.8E-53 6.1E-58 347.3 14.0 163 15-192 1-182 (225)
12 cd01407 SIR2-fam SIR2 family o 100.0 1.5E-52 3.2E-57 341.5 13.7 161 23-192 1-178 (218)
13 PTZ00408 NAD-dependent deacety 100.0 1.6E-51 3.4E-56 339.9 12.1 158 20-192 2-183 (242)
14 PF02146 SIR2: Sir2 family; I 100.0 6.1E-52 1.3E-56 328.1 6.7 154 30-192 1-174 (178)
15 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 7.6E-51 1.7E-55 332.6 12.8 158 23-192 1-175 (224)
16 KOG1905|consensus 100.0 1.7E-50 3.6E-55 333.5 9.9 190 1-191 34-226 (353)
17 cd00296 SIR2 SIR2 superfamily 100.0 8.3E-48 1.8E-52 313.4 13.4 161 23-192 1-180 (222)
18 KOG2683|consensus 100.0 1.3E-47 2.9E-52 307.9 12.4 186 4-191 27-256 (305)
19 KOG2684|consensus 100.0 4.3E-47 9.2E-52 325.4 12.6 176 10-191 76-290 (412)
20 KOG2682|consensus 100.0 1.5E-45 3.3E-50 296.4 6.5 176 10-191 22-222 (314)
21 cd01406 SIR2-like Sir2-like: P 99.2 7.1E-12 1.5E-16 103.3 5.1 96 23-118 1-150 (242)
22 PF13289 SIR2_2: SIR2-like dom 93.4 0.054 1.2E-06 40.1 2.2 14 87-100 2-15 (143)
23 smart00834 CxxC_CXXC_SSSS Puta 90.1 0.21 4.6E-06 29.3 1.7 34 115-157 4-37 (41)
24 PF09723 Zn-ribbon_8: Zinc rib 90.0 0.19 4.2E-06 30.1 1.4 35 114-157 3-38 (42)
25 PF00205 TPP_enzyme_M: Thiamin 82.6 1.1 2.4E-05 33.2 2.5 25 12-36 1-25 (137)
26 PRK12496 hypothetical protein; 79.9 1.1 2.4E-05 34.9 1.7 38 106-157 111-154 (164)
27 TIGR02605 CxxC_CxxC_SSSS putat 79.6 1.3 2.9E-05 27.3 1.7 31 115-154 4-34 (52)
28 PF05191 ADK_lid: Adenylate ki 79.2 1.1 2.3E-05 26.1 1.0 30 117-156 2-31 (36)
29 PF00205 TPP_enzyme_M: Thiamin 78.0 1.8 3.9E-05 32.0 2.3 18 174-191 70-87 (137)
30 TIGR02098 MJ0042_CXXC MJ0042 f 76.1 1.6 3.4E-05 25.2 1.2 33 117-156 3-35 (38)
31 PRK06266 transcription initiat 76.0 1.7 3.7E-05 34.4 1.7 32 116-158 117-148 (178)
32 TIGR00373 conserved hypothetic 74.8 1.8 4E-05 33.5 1.6 32 115-157 108-139 (158)
33 PRK00945 acetyl-CoA decarbonyl 73.9 4.7 0.0001 31.8 3.7 24 12-35 24-47 (171)
34 PRK00398 rpoP DNA-directed RNA 72.8 2 4.4E-05 26.0 1.1 29 116-156 3-31 (46)
35 PRK14873 primosome assembly pr 72.6 26 0.00055 33.5 8.9 46 70-125 356-401 (665)
36 COG3142 CutC Uncharacterized p 71.9 4 8.8E-05 33.7 3.0 31 7-37 153-184 (241)
37 COG2331 Uncharacterized protei 71.7 2.5 5.4E-05 28.8 1.4 42 115-165 11-57 (82)
38 TIGR00315 cdhB CO dehydrogenas 71.0 4.1 9E-05 31.8 2.7 23 12-34 17-39 (162)
39 PRK06260 threonine synthase; V 70.8 2.7 5.9E-05 37.2 1.9 29 115-157 2-30 (397)
40 smart00531 TFIIE Transcription 70.8 2.3 5.1E-05 32.4 1.3 36 116-158 99-135 (147)
41 COG1379 PHP family phosphoeste 70.4 1.3 2.9E-05 38.4 -0.1 41 110-161 240-280 (403)
42 PF07295 DUF1451: Protein of u 69.2 3.6 7.9E-05 31.5 2.1 30 114-155 110-139 (146)
43 KOG4166|consensus 69.2 6.1 0.00013 35.8 3.7 33 6-38 282-314 (675)
44 PF13717 zinc_ribbon_4: zinc-r 68.8 3.2 7E-05 23.9 1.3 32 117-155 3-34 (36)
45 cd05013 SIS_RpiR RpiR-like pro 68.5 3.3 7.2E-05 29.8 1.7 88 11-100 2-104 (139)
46 TIGR00354 polC DNA polymerase, 67.3 3.7 7.9E-05 40.4 2.1 39 109-161 1000-1043(1095)
47 TIGR00853 pts-lac PTS system, 66.8 3.2 7E-05 29.3 1.2 16 21-36 2-17 (95)
48 COG3091 SprT Zn-dependent meta 66.6 1.1 2.5E-05 34.5 -1.2 84 66-157 63-151 (156)
49 COG0028 IlvB Thiamine pyrophos 66.3 5.9 0.00013 36.8 3.2 28 10-37 188-215 (550)
50 PRK11032 hypothetical protein; 66.1 4.5 9.8E-05 31.5 2.0 30 114-155 122-151 (160)
51 PF09845 DUF2072: Zn-ribbon co 65.9 3.6 7.8E-05 31.0 1.4 12 117-128 2-13 (131)
52 PRK09590 celB cellobiose phosp 65.5 3.3 7.2E-05 29.8 1.1 14 23-36 2-15 (104)
53 PRK04023 DNA polymerase II lar 64.7 4.4 9.5E-05 40.1 2.1 39 109-161 1025-1068(1121)
54 PRK14717 putative glycine/sarc 64.1 15 0.00033 26.3 4.2 33 12-45 9-50 (107)
55 PRK14714 DNA polymerase II lar 62.5 4.9 0.00011 40.7 2.0 38 109-160 1241-1283(1337)
56 PF14419 SPOUT_MTase_2: AF2226 62.5 11 0.00025 29.3 3.6 39 7-54 105-143 (173)
57 PF09538 FYDLN_acid: Protein o 62.2 6 0.00013 28.8 2.0 30 117-159 10-39 (108)
58 PRK06965 acetolactate synthase 61.9 9 0.0002 35.6 3.6 26 9-34 208-233 (587)
59 COG1979 Uncharacterized oxidor 61.9 5.4 0.00012 34.9 1.9 76 10-99 17-92 (384)
60 cd00729 rubredoxin_SM Rubredox 61.7 6.9 0.00015 22.2 1.8 13 116-128 2-14 (34)
61 PF13248 zf-ribbon_3: zinc-rib 61.7 4.7 0.0001 21.4 1.0 11 116-126 2-12 (26)
62 cd00350 rubredoxin_like Rubred 61.1 7 0.00015 21.9 1.7 12 117-128 2-13 (33)
63 PF02302 PTS_IIB: PTS system, 60.8 5 0.00011 27.2 1.3 14 24-37 1-14 (90)
64 PRK13936 phosphoheptose isomer 60.8 13 0.00027 29.6 3.8 29 7-36 28-56 (197)
65 COG1440 CelA Phosphotransferas 60.5 5.6 0.00012 28.6 1.5 14 23-36 2-15 (102)
66 PRK07591 threonine synthase; V 60.5 5.2 0.00011 35.8 1.7 31 114-159 16-46 (421)
67 PF13719 zinc_ribbon_5: zinc-r 59.2 5.8 0.00013 22.9 1.2 32 117-155 3-34 (37)
68 COG1198 PriA Primosomal protei 58.9 30 0.00064 33.4 6.5 26 99-126 429-454 (730)
69 COG4019 Uncharacterized protei 58.7 12 0.00026 28.1 3.1 24 9-32 23-46 (156)
70 PRK07524 hypothetical protein; 58.5 11 0.00023 34.6 3.4 26 9-34 188-213 (535)
71 PF01475 FUR: Ferric uptake re 58.0 13 0.00029 26.7 3.2 53 67-130 40-94 (120)
72 COG3961 Pyruvate decarboxylase 57.9 12 0.00026 34.6 3.5 43 3-45 190-244 (557)
73 TIGR03393 indolpyr_decarb indo 57.9 13 0.00027 34.2 3.7 26 9-34 192-217 (539)
74 cd05564 PTS_IIB_chitobiose_lic 57.4 6.1 0.00013 27.8 1.3 13 24-36 1-13 (96)
75 PRK08273 thiamine pyrophosphat 57.2 12 0.00026 34.9 3.6 26 9-34 195-220 (597)
76 PRK10499 PTS system N,N'-diace 57.0 6.3 0.00014 28.4 1.3 14 23-36 4-17 (106)
77 TIGR02300 FYDLN_acid conserved 56.8 9.2 0.0002 28.7 2.2 31 116-159 9-39 (129)
78 TIGR01504 glyox_carbo_lig glyo 56.2 13 0.00029 34.6 3.6 27 9-35 189-215 (588)
79 PRK07979 acetolactate synthase 55.6 13 0.00027 34.5 3.4 28 9-36 193-220 (574)
80 COG3364 Zn-ribbon containing p 55.2 6.5 0.00014 28.3 1.1 12 117-128 3-14 (112)
81 TIGR03844 cysteate_syn cysteat 55.0 7.9 0.00017 34.4 1.9 13 115-127 1-13 (398)
82 CHL00099 ilvB acetohydroxyacid 55.0 13 0.00029 34.5 3.4 26 9-34 204-229 (585)
83 TIGR02720 pyruv_oxi_spxB pyruv 54.8 13 0.00028 34.5 3.3 26 9-34 187-212 (575)
84 PF12647 RNHCP: RNHCP domain; 54.8 13 0.00029 26.2 2.6 14 151-164 46-59 (92)
85 TIGR03457 sulphoacet_xsc sulfo 54.5 14 0.00029 34.3 3.4 26 10-35 184-209 (579)
86 COG0549 ArcC Carbamate kinase 54.5 40 0.00086 29.0 5.8 72 14-104 175-246 (312)
87 PRK09259 putative oxalyl-CoA d 54.2 13 0.00029 34.3 3.3 26 9-34 200-225 (569)
88 PRK13937 phosphoheptose isomer 54.2 19 0.00041 28.3 3.8 30 6-36 22-51 (188)
89 PRK10892 D-arabinose 5-phospha 53.8 11 0.00024 32.0 2.6 94 6-100 30-138 (326)
90 TIGR00746 arcC carbamate kinas 53.7 23 0.00049 30.6 4.4 87 4-109 163-249 (310)
91 cd05005 SIS_PHI Hexulose-6-pho 53.4 16 0.00035 28.2 3.2 86 10-100 21-119 (179)
92 PRK07586 hypothetical protein; 53.2 14 0.00031 33.5 3.3 26 9-34 184-209 (514)
93 PRK07418 acetolactate synthase 53.2 14 0.00031 34.5 3.3 26 9-34 211-236 (616)
94 PRK08979 acetolactate synthase 53.0 15 0.00032 34.1 3.4 26 9-34 193-218 (572)
95 PRK11557 putative DNA-binding 52.8 15 0.00033 30.4 3.2 27 10-37 116-142 (278)
96 COG3486 IucD Lysine/ornithine 52.5 43 0.00094 30.2 6.0 113 66-191 65-196 (436)
97 TIGR03127 RuMP_HxlB 6-phospho 52.4 16 0.00035 28.1 3.1 90 10-100 18-116 (179)
98 PRK11269 glyoxylate carboligas 52.2 16 0.00034 34.0 3.5 26 9-34 190-215 (591)
99 PLN02470 acetolactate synthase 51.8 15 0.00033 34.1 3.3 26 9-34 202-227 (585)
100 PF09151 DUF1936: Domain of un 51.6 7.1 0.00015 21.9 0.6 11 149-159 4-15 (36)
101 PRK06112 acetolactate synthase 51.6 16 0.00034 33.9 3.4 26 9-34 200-225 (578)
102 PRK06725 acetolactate synthase 51.5 17 0.00036 33.8 3.5 26 10-35 202-227 (570)
103 PRK06154 hypothetical protein; 51.3 16 0.00035 33.8 3.4 27 9-35 201-227 (565)
104 PRK07282 acetolactate synthase 51.1 17 0.00036 33.7 3.4 26 9-34 197-222 (566)
105 PRK07789 acetolactate synthase 51.1 16 0.00035 34.1 3.3 26 9-34 218-243 (612)
106 PRK08327 acetolactate synthase 50.8 16 0.00034 33.9 3.2 27 9-35 207-233 (569)
107 PLN02573 pyruvate decarboxylas 50.6 18 0.00039 33.7 3.6 28 8-35 210-237 (578)
108 PRK09107 acetolactate synthase 50.4 17 0.00038 33.9 3.4 26 9-34 199-224 (595)
109 PRK08617 acetolactate synthase 50.2 17 0.00037 33.4 3.3 26 9-34 188-213 (552)
110 PRK10310 PTS system galactitol 50.2 8.9 0.00019 26.9 1.2 15 23-37 3-17 (94)
111 PRK11302 DNA-binding transcrip 50.2 16 0.00035 30.3 2.9 27 10-37 116-142 (284)
112 COG1439 Predicted nucleic acid 50.1 9.8 0.00021 30.1 1.5 27 116-158 139-165 (177)
113 COG1996 RPC10 DNA-directed RNA 49.9 8.7 0.00019 23.9 0.9 27 117-155 7-33 (49)
114 PRK08527 acetolactate synthase 49.7 17 0.00038 33.5 3.3 27 9-35 190-216 (563)
115 PRK07092 benzoylformate decarb 49.5 18 0.0004 33.0 3.4 26 9-34 193-218 (530)
116 PRK07064 hypothetical protein; 49.1 18 0.00039 33.1 3.3 35 9-43 190-233 (544)
117 TIGR03254 oxalate_oxc oxalyl-C 49.0 19 0.0004 33.2 3.4 29 163-191 247-275 (554)
118 TIGR03394 indol_phenyl_DC indo 48.9 22 0.00047 32.8 3.8 27 8-34 187-213 (535)
119 PRK05858 hypothetical protein; 48.9 18 0.00038 33.3 3.2 29 163-191 244-272 (542)
120 TIGR00173 menD 2-succinyl-5-en 48.5 18 0.00038 32.3 3.1 37 9-45 198-245 (432)
121 PRK08322 acetolactate synthase 48.4 20 0.00044 32.8 3.5 26 9-34 183-208 (547)
122 TIGR02418 acolac_catab acetola 48.2 20 0.00042 32.9 3.4 26 10-35 183-208 (539)
123 PRK12474 hypothetical protein; 48.2 20 0.00043 32.7 3.4 26 9-34 188-213 (518)
124 cd05006 SIS_GmhA Phosphoheptos 48.1 27 0.00059 26.9 3.7 30 9-38 16-48 (177)
125 TIGR03254 oxalate_oxc oxalyl-C 48.0 20 0.00042 33.1 3.4 26 9-34 193-218 (554)
126 PRK07525 sulfoacetaldehyde ace 47.7 20 0.00042 33.4 3.3 26 9-34 187-212 (588)
127 TIGR00118 acolac_lg acetolacta 47.4 21 0.00045 32.9 3.4 25 10-34 189-213 (558)
128 PRK06276 acetolactate synthase 47.4 22 0.00048 33.0 3.6 26 9-34 190-215 (586)
129 PRK06456 acetolactate synthase 47.1 21 0.00046 32.9 3.5 26 9-34 194-219 (572)
130 PRK06546 pyruvate dehydrogenas 47.1 20 0.00043 33.3 3.3 26 9-34 188-213 (578)
131 PRK06048 acetolactate synthase 46.9 21 0.00045 33.0 3.3 26 10-35 195-220 (561)
132 PRK15482 transcriptional regul 46.8 20 0.00043 29.9 3.0 27 10-37 123-149 (285)
133 PRK13265 glycine/sarcosine/bet 46.7 40 0.00086 25.7 4.2 33 13-45 56-99 (154)
134 PRK09411 carbamate kinase; Rev 46.5 46 0.00099 28.6 5.1 70 12-104 166-235 (297)
135 PRK07586 hypothetical protein; 46.4 20 0.00044 32.6 3.2 19 173-191 254-272 (514)
136 PRK06457 pyruvate dehydrogenas 46.4 21 0.00044 32.9 3.2 25 10-34 183-207 (549)
137 PRK07710 acetolactate synthase 46.2 22 0.00047 32.9 3.4 25 10-34 203-227 (571)
138 PRK08978 acetolactate synthase 46.1 21 0.00045 32.8 3.2 26 9-34 183-208 (548)
139 PF11576 DUF3236: Protein of u 45.9 22 0.00048 27.2 2.7 25 9-33 22-46 (154)
140 PRK08155 acetolactate synthase 45.9 22 0.00047 32.9 3.3 25 10-34 199-223 (564)
141 PF14353 CpXC: CpXC protein 45.7 9.9 0.00021 28.0 0.9 19 111-129 33-51 (128)
142 PRK06450 threonine synthase; V 45.6 12 0.00027 32.4 1.6 11 117-127 4-14 (338)
143 PRK06466 acetolactate synthase 45.4 22 0.00048 32.9 3.3 26 9-34 193-218 (574)
144 cd07153 Fur_like Ferric uptake 45.1 31 0.00067 24.4 3.4 52 66-128 32-85 (116)
145 PRK11572 copper homeostasis pr 45.1 28 0.0006 29.1 3.5 29 8-36 154-182 (248)
146 PRK10886 DnaA initiator-associ 44.9 32 0.00068 27.5 3.7 28 8-36 27-54 (196)
147 PRK08199 thiamine pyrophosphat 44.9 23 0.00051 32.6 3.4 26 9-34 191-216 (557)
148 PRK14715 DNA polymerase II lar 44.7 15 0.00032 37.8 2.0 38 109-161 1530-1572(1627)
149 PRK05858 hypothetical protein; 44.3 26 0.00056 32.2 3.6 26 9-34 190-215 (542)
150 PRK06882 acetolactate synthase 44.1 24 0.00053 32.6 3.4 26 9-34 193-218 (574)
151 cd00730 rubredoxin Rubredoxin; 44.0 19 0.0004 22.4 1.8 14 116-129 1-14 (50)
152 PRK05441 murQ N-acetylmuramic 43.9 30 0.00065 29.5 3.6 31 7-38 47-77 (299)
153 PF00301 Rubredoxin: Rubredoxi 43.7 19 0.00042 22.1 1.8 15 116-130 1-15 (47)
154 PRK08611 pyruvate oxidase; Pro 43.6 26 0.00055 32.6 3.4 25 10-34 191-215 (576)
155 PF13240 zinc_ribbon_2: zinc-r 42.7 12 0.00025 19.4 0.6 8 119-126 2-9 (23)
156 cd05007 SIS_Etherase N-acetylm 42.7 32 0.00069 28.6 3.5 93 7-100 34-162 (257)
157 cd05015 SIS_PGI_1 Phosphogluco 42.0 97 0.0021 23.5 6.0 46 66-111 86-137 (158)
158 PRK09462 fur ferric uptake reg 42.0 51 0.0011 24.8 4.3 53 66-129 49-103 (148)
159 COG1773 Rubredoxin [Energy pro 41.9 20 0.00042 22.9 1.6 16 115-130 2-17 (55)
160 PRK05580 primosome assembly pr 41.8 50 0.0011 31.5 5.1 21 171-191 468-488 (679)
161 PRK12380 hydrogenase nickel in 41.5 17 0.00036 26.5 1.5 21 108-128 62-82 (113)
162 cd05567 PTS_IIB_mannitol PTS_I 41.5 16 0.00035 24.9 1.3 15 23-37 1-15 (87)
163 PF13453 zf-TFIIB: Transcripti 41.2 8.4 0.00018 22.6 -0.1 8 118-125 1-8 (41)
164 PRK09124 pyruvate dehydrogenas 41.0 27 0.00058 32.3 3.1 25 10-34 189-213 (574)
165 PRK08266 hypothetical protein; 40.8 29 0.00062 31.8 3.3 25 10-34 193-217 (542)
166 TIGR00177 molyb_syn molybdenum 40.2 26 0.00056 26.3 2.4 21 172-192 57-77 (144)
167 PRK12352 putative carbamate ki 39.8 66 0.0014 27.8 5.1 68 17-102 180-247 (316)
168 PF01155 HypA: Hydrogenase exp 39.8 14 0.0003 26.9 0.8 35 107-155 61-95 (113)
169 TIGR00100 hypA hydrogenase nic 39.6 19 0.0004 26.3 1.5 16 113-128 67-82 (115)
170 PRK09259 putative oxalyl-CoA d 39.4 32 0.00069 31.8 3.4 29 163-191 254-282 (569)
171 TIGR00595 priA primosomal prot 39.2 44 0.00095 30.7 4.2 20 172-191 301-320 (505)
172 PRK08273 thiamine pyrophosphat 38.6 24 0.00052 32.9 2.4 18 174-191 265-282 (597)
173 smart00659 RPOLCX RNA polymera 38.5 21 0.00045 21.6 1.3 27 117-156 3-29 (44)
174 PRK02947 hypothetical protein; 38.1 46 0.001 27.4 3.8 29 8-37 26-54 (246)
175 PRK00564 hypA hydrogenase nick 38.0 19 0.00041 26.4 1.3 22 107-128 62-83 (117)
176 PF00731 AIRC: AIR carboxylase 37.5 23 0.0005 27.3 1.8 25 12-36 41-68 (150)
177 TIGR00375 conserved hypothetic 37.4 18 0.00039 32.0 1.3 39 111-161 235-273 (374)
178 PF00466 Ribosomal_L10: Riboso 37.3 58 0.0013 22.5 3.7 29 9-37 7-35 (100)
179 PF01113 DapB_N: Dihydrodipico 37.1 35 0.00076 24.9 2.7 32 158-192 68-100 (124)
180 KOG2593|consensus 37.0 15 0.00033 33.0 0.8 36 117-157 129-164 (436)
181 TIGR02321 Pphn_pyruv_hyd phosp 36.9 23 0.0005 30.2 1.8 19 24-42 37-55 (290)
182 COG3925 N-terminal domain of t 36.9 22 0.00048 25.3 1.4 12 180-191 39-50 (103)
183 PF10571 UPF0547: Uncharacteri 36.9 24 0.00052 18.8 1.3 10 118-127 2-11 (26)
184 PF11590 DNAPolymera_Pol: DNA 36.8 30 0.00066 20.6 1.8 23 14-36 2-24 (41)
185 TIGR03394 indol_phenyl_DC indo 36.8 27 0.00058 32.2 2.4 18 174-191 261-278 (535)
186 COG3962 Acetolactate synthase 36.3 39 0.00084 31.2 3.2 37 9-45 216-264 (617)
187 PRK07979 acetolactate synthase 36.3 27 0.00058 32.4 2.3 18 174-191 265-282 (574)
188 PF02150 RNA_POL_M_15KD: RNA p 36.2 15 0.00032 21.0 0.4 12 149-160 4-15 (35)
189 PRK07524 hypothetical protein; 36.2 28 0.0006 31.9 2.4 19 173-191 255-273 (535)
190 COG0761 lytB 4-Hydroxy-3-methy 36.2 30 0.00065 29.6 2.4 19 172-190 203-221 (294)
191 COG0589 UspA Universal stress 36.0 59 0.0013 23.2 3.8 31 159-192 93-123 (154)
192 PRK12474 hypothetical protein; 36.0 34 0.00074 31.2 2.9 18 174-191 259-276 (518)
193 COG1029 FwdB Formylmethanofura 35.7 30 0.00064 30.7 2.3 33 5-37 62-94 (429)
194 PF14311 DUF4379: Domain of un 35.6 22 0.00047 22.1 1.2 22 107-128 19-40 (55)
195 TIGR03393 indolpyr_decarb indo 35.2 29 0.00062 31.9 2.3 17 175-191 266-282 (539)
196 PRK07418 acetolactate synthase 35.1 29 0.00063 32.5 2.4 18 174-191 283-300 (616)
197 PRK06457 pyruvate dehydrogenas 34.9 29 0.00064 31.9 2.4 17 175-191 253-269 (549)
198 PRK07525 sulfoacetaldehyde ace 34.8 30 0.00065 32.2 2.4 18 174-191 259-276 (588)
199 TIGR01162 purE phosphoribosyla 34.7 54 0.0012 25.4 3.4 74 13-97 40-116 (156)
200 PRK06725 acetolactate synthase 34.7 29 0.00064 32.2 2.3 17 175-191 274-290 (570)
201 PF13714 PEP_mutase: Phosphoen 34.6 20 0.00043 29.6 1.1 26 17-42 23-49 (238)
202 PRK06154 hypothetical protein; 34.6 31 0.00066 32.0 2.4 18 174-191 273-290 (565)
203 PF12172 DUF35_N: Rubredoxin-l 34.4 15 0.00033 20.9 0.3 15 112-126 7-21 (37)
204 PLN02470 acetolactate synthase 34.1 31 0.00067 32.1 2.4 17 175-191 273-289 (585)
205 TIGR00143 hypF [NiFe] hydrogen 34.0 1.1E+02 0.0024 29.5 6.1 40 148-191 142-184 (711)
206 cd00758 MoCF_BD MoCF_BD: molyb 34.0 38 0.00082 24.9 2.4 21 172-192 49-69 (133)
207 PRK08979 acetolactate synthase 34.0 31 0.00068 31.9 2.4 18 174-191 265-282 (572)
208 PRK08611 pyruvate oxidase; Pro 33.9 31 0.00067 32.0 2.4 17 175-191 261-277 (576)
209 cd04254 AAK_UMPK-PyrH-Ec UMP k 33.6 77 0.0017 25.7 4.4 26 7-32 24-49 (231)
210 PRK07282 acetolactate synthase 33.6 32 0.00069 31.9 2.4 18 174-191 269-286 (566)
211 PRK03681 hypA hydrogenase nick 33.6 26 0.00057 25.5 1.5 20 109-128 63-82 (114)
212 PRK08197 threonine synthase; V 33.4 23 0.00051 31.2 1.4 15 115-129 6-20 (394)
213 cd05566 PTS_IIB_galactitol PTS 33.4 26 0.00056 23.7 1.3 15 23-37 1-15 (89)
214 COG2513 PrpB PEP phosphonomuta 33.0 31 0.00068 29.4 2.0 21 24-44 40-60 (289)
215 cd04239 AAK_UMPK-like AAK_UMPK 33.0 79 0.0017 25.5 4.4 23 11-33 22-48 (229)
216 PLN02569 threonine synthase 32.7 26 0.00057 32.0 1.7 14 116-129 49-62 (484)
217 COG4588 AcfC Accessory coloniz 32.7 24 0.00051 29.0 1.2 30 11-40 114-143 (252)
218 PRK14558 pyrH uridylate kinase 32.5 80 0.0017 25.5 4.4 24 10-33 23-50 (231)
219 COG0028 IlvB Thiamine pyrophos 32.5 31 0.00068 32.1 2.1 19 173-191 258-276 (550)
220 PRK00414 gmhA phosphoheptose i 32.5 52 0.0011 26.0 3.2 29 8-36 26-57 (192)
221 PRK07789 acetolactate synthase 32.4 34 0.00074 32.0 2.4 18 174-191 290-307 (612)
222 TIGR02075 pyrH_bact uridylate 32.4 81 0.0018 25.6 4.4 29 10-39 28-56 (233)
223 PRK03824 hypA hydrogenase nick 32.3 29 0.00063 26.1 1.6 15 115-129 69-83 (135)
224 COG1675 TFA1 Transcription ini 32.3 28 0.00061 27.5 1.5 31 116-157 113-143 (176)
225 smart00852 MoCF_biosynth Proba 32.2 44 0.00095 24.5 2.5 22 171-192 47-68 (135)
226 PRK08322 acetolactate synthase 32.2 35 0.00075 31.3 2.4 17 175-191 256-272 (547)
227 PRK06965 acetolactate synthase 32.1 35 0.00075 31.8 2.4 17 175-191 281-297 (587)
228 PRK12570 N-acetylmuramic acid- 32.1 66 0.0014 27.4 3.9 28 72-99 143-170 (296)
229 smart00463 SMR Small MutS-rela 32.0 1E+02 0.0022 20.3 4.2 14 23-36 32-45 (80)
230 PRK06882 acetolactate synthase 31.9 35 0.00076 31.5 2.4 18 174-191 265-282 (574)
231 PRK08978 acetolactate synthase 31.8 35 0.00077 31.3 2.4 18 174-191 255-272 (548)
232 PRK09107 acetolactate synthase 31.8 36 0.00077 31.8 2.4 17 175-191 274-290 (595)
233 PF02035 Coagulin: Coagulin; 31.7 25 0.00054 26.6 1.1 36 6-44 22-57 (174)
234 PRK06048 acetolactate synthase 31.7 36 0.00077 31.4 2.4 17 175-191 267-283 (561)
235 TIGR02720 pyruv_oxi_spxB pyruv 31.6 36 0.00078 31.6 2.4 17 175-191 258-274 (575)
236 PRK15456 universal stress prot 31.5 71 0.0015 23.2 3.6 12 180-192 104-115 (142)
237 CHL00099 ilvB acetohydroxyacid 31.3 37 0.0008 31.6 2.4 17 175-191 277-293 (585)
238 cd02761 MopB_FmdB-FwdB The Mop 31.1 63 0.0014 28.1 3.8 26 10-35 223-248 (415)
239 cd05009 SIS_GlmS_GlmD_2 SIS (S 31.1 46 0.001 24.3 2.5 25 11-36 2-26 (153)
240 PRK12686 carbamate kinase; Rev 31.0 1.4E+02 0.0031 25.7 5.8 69 13-101 174-242 (312)
241 PRK06546 pyruvate dehydrogenas 31.0 38 0.00081 31.5 2.4 18 174-191 258-275 (578)
242 PRK14559 putative protein seri 30.9 36 0.00078 32.4 2.3 7 148-154 43-49 (645)
243 PF02591 DUF164: Putative zinc 30.8 43 0.00093 20.9 2.0 41 106-156 16-56 (56)
244 COG1737 RpiR Transcriptional r 30.8 58 0.0013 27.3 3.3 28 9-37 117-144 (281)
245 PRK08527 acetolactate synthase 30.7 38 0.00082 31.3 2.4 17 175-191 263-279 (563)
246 cd05563 PTS_IIB_ascorbate PTS_ 30.6 30 0.00065 23.2 1.3 14 24-37 1-14 (86)
247 PLN02775 Probable dihydrodipic 30.6 51 0.0011 28.1 2.9 35 157-192 79-113 (286)
248 TIGR02418 acolac_catab acetola 30.3 39 0.00084 31.0 2.3 17 175-191 256-272 (539)
249 PLN02573 pyruvate decarboxylas 30.3 39 0.00084 31.5 2.4 17 175-191 285-301 (578)
250 PF06750 DiS_P_DiS: Bacterial 30.2 25 0.00055 24.6 0.9 38 116-158 33-70 (92)
251 PF14803 Nudix_N_2: Nudix N-te 29.9 23 0.00051 20.2 0.5 13 149-161 3-15 (34)
252 TIGR01504 glyox_carbo_lig glyo 29.8 40 0.00086 31.4 2.3 17 175-191 263-279 (588)
253 COG1029 FwdB Formylmethanofura 29.8 55 0.0012 29.1 3.0 30 9-38 232-261 (429)
254 PF14319 Zn_Tnp_IS91: Transpos 29.7 38 0.00083 24.5 1.8 10 116-125 42-51 (111)
255 PF10263 SprT-like: SprT-like 29.7 25 0.00054 26.4 0.8 36 113-158 120-155 (157)
256 PRK03958 tRNA 2'-O-methylase; 29.5 95 0.0021 24.6 4.1 93 71-190 19-112 (176)
257 PRK06112 acetolactate synthase 29.4 42 0.0009 31.1 2.4 18 174-191 277-294 (578)
258 PRK08327 acetolactate synthase 29.3 27 0.00058 32.4 1.1 17 175-191 273-289 (569)
259 cd04242 AAK_G5K_ProB AAK_G5K_P 29.1 90 0.002 25.6 4.2 29 7-35 22-50 (251)
260 PF13580 SIS_2: SIS domain; PD 29.0 84 0.0018 23.2 3.6 27 10-36 19-48 (138)
261 PF08271 TF_Zn_Ribbon: TFIIB z 28.8 16 0.00035 21.6 -0.3 34 117-161 1-34 (43)
262 PF09986 DUF2225: Uncharacteri 28.8 28 0.0006 28.2 1.0 16 116-131 5-20 (214)
263 PRK11639 zinc uptake transcrip 28.8 69 0.0015 24.8 3.2 56 66-129 57-113 (169)
264 PF09297 zf-NADH-PPase: NADH p 28.7 24 0.00051 19.5 0.4 11 149-159 6-16 (32)
265 PF01713 Smr: Smr domain; Int 28.7 77 0.0017 21.1 3.1 30 10-39 10-44 (83)
266 TIGR00216 ispH_lytB (E)-4-hydr 28.6 59 0.0013 27.6 3.0 20 171-190 198-217 (280)
267 PRK11337 DNA-binding transcrip 28.6 55 0.0012 27.3 2.8 27 10-37 128-154 (292)
268 TIGR03457 sulphoacet_xsc sulfo 28.5 44 0.00095 31.0 2.4 18 174-191 255-272 (579)
269 PF02401 LYTB: LytB protein; 28.5 58 0.0013 27.7 2.9 20 171-190 199-218 (281)
270 cd05565 PTS_IIB_lactose PTS_II 28.5 33 0.00072 24.4 1.3 13 24-36 2-14 (99)
271 TIGR00824 EIIA-man PTS system, 28.4 85 0.0018 22.6 3.5 27 3-29 39-65 (116)
272 TIGR02130 dapB_plant dihydrodi 28.3 57 0.0012 27.7 2.8 34 158-192 69-102 (275)
273 PRK07064 hypothetical protein; 28.0 46 0.00099 30.5 2.4 18 174-191 257-274 (544)
274 PF06794 UPF0270: Uncharacteri 27.9 1E+02 0.0022 20.6 3.4 25 5-29 32-56 (70)
275 PRK06456 acetolactate synthase 27.9 45 0.00098 30.8 2.4 17 175-191 267-283 (572)
276 TIGR02320 PEP_mutase phosphoen 27.7 37 0.00081 28.8 1.6 19 24-42 40-58 (285)
277 PRK07449 2-succinyl-5-enolpyru 27.7 41 0.0009 31.0 2.1 18 174-191 279-296 (568)
278 COG0041 PurE Phosphoribosylcar 27.6 95 0.0021 24.2 3.7 16 21-36 55-70 (162)
279 PRK04351 hypothetical protein; 27.6 31 0.00068 26.4 1.1 38 111-158 107-144 (149)
280 PF13913 zf-C2HC_2: zinc-finge 27.5 28 0.00062 18.2 0.6 16 117-132 3-18 (25)
281 COG3357 Predicted transcriptio 27.5 36 0.00078 24.0 1.2 28 115-154 57-84 (97)
282 COG0735 Fur Fe2+/Zn2+ uptake r 27.5 92 0.002 23.5 3.6 57 65-130 51-107 (145)
283 PRK08199 thiamine pyrophosphat 27.3 48 0.001 30.5 2.4 17 175-191 264-280 (557)
284 PRK11269 glyoxylate carboligas 27.1 47 0.001 30.9 2.4 17 175-191 264-280 (591)
285 PRK08266 hypothetical protein; 27.1 45 0.00098 30.5 2.2 18 174-191 256-273 (542)
286 TIGR00321 dhys deoxyhypusine s 27.1 2.3E+02 0.0049 24.4 6.3 33 7-39 29-61 (301)
287 TIGR00118 acolac_lg acetolacta 27.1 48 0.001 30.5 2.4 17 175-191 261-277 (558)
288 PRK06466 acetolactate synthase 27.0 48 0.001 30.7 2.4 18 174-191 265-282 (574)
289 PF04723 GRDA: Glycine reducta 26.9 1.1E+02 0.0024 23.3 3.8 34 11-45 56-98 (150)
290 PF01927 Mut7-C: Mut7-C RNAse 26.7 32 0.0007 26.0 1.0 12 116-127 124-135 (147)
291 TIGR02317 prpB methylisocitrat 26.6 43 0.00093 28.5 1.8 20 23-42 34-53 (285)
292 COG2103 Predicted sugar phosph 26.5 1.1E+02 0.0024 26.0 4.2 35 10-45 48-89 (298)
293 PRK06276 acetolactate synthase 26.4 52 0.0011 30.6 2.5 18 174-191 262-279 (586)
294 PRK11543 gutQ D-arabinose 5-ph 26.4 70 0.0015 27.0 3.1 28 10-37 29-56 (321)
295 PRK07710 acetolactate synthase 26.1 50 0.0011 30.5 2.3 17 175-191 275-291 (571)
296 cd02115 AAK Amino Acid Kinases 26.1 1.4E+02 0.003 24.0 4.7 31 5-35 12-42 (248)
297 PF00994 MoCF_biosynth: Probab 26.0 1.1E+02 0.0023 22.6 3.8 29 3-34 41-69 (144)
298 PF14026 DUF4242: Protein of u 26.0 43 0.00094 22.6 1.4 15 96-110 63-77 (77)
299 PRK00805 putative deoxyhypusin 26.0 2.3E+02 0.0049 24.8 6.1 33 7-39 30-62 (329)
300 PRK09124 pyruvate dehydrogenas 25.9 52 0.0011 30.4 2.4 17 175-191 259-275 (574)
301 COG1545 Predicted nucleic-acid 25.9 43 0.00092 25.3 1.5 16 112-127 25-40 (140)
302 TIGR03129 one_C_dehyd_B formyl 25.8 81 0.0017 27.4 3.5 27 9-35 228-254 (421)
303 PRK00919 GMP synthase subunit 25.7 79 0.0017 27.2 3.3 30 2-31 2-31 (307)
304 KOG4126|consensus 25.7 78 0.0017 29.3 3.3 25 21-46 71-95 (529)
305 PF03604 DNA_RNApol_7kD: DNA d 25.3 63 0.0014 18.1 1.7 10 118-127 2-11 (32)
306 KOG1185|consensus 25.2 1.1E+02 0.0024 28.3 4.2 37 9-45 204-252 (571)
307 PRK00304 hypothetical protein; 25.1 1E+02 0.0022 20.9 3.1 26 4-29 30-55 (75)
308 PF01058 Oxidored_q6: NADH ubi 25.1 53 0.0012 24.3 1.9 34 157-190 45-81 (131)
309 PRK08155 acetolactate synthase 25.1 55 0.0012 30.2 2.4 17 175-191 271-287 (564)
310 cd02771 MopB_NDH-1_NuoG2-N7 Mo 25.1 78 0.0017 28.3 3.3 25 9-33 252-276 (472)
311 PF08544 GHMP_kinases_C: GHMP 25.0 1.6E+02 0.0035 19.1 4.2 25 8-32 32-57 (85)
312 COG1105 FruK Fructose-1-phosph 25.0 94 0.002 26.9 3.6 32 5-40 113-144 (310)
313 cd00006 PTS_IIA_man PTS_IIA, P 24.8 1.2E+02 0.0027 21.8 3.8 28 3-30 38-65 (122)
314 PRK08617 acetolactate synthase 24.7 52 0.0011 30.2 2.2 17 175-191 262-278 (552)
315 PRK07092 benzoylformate decarb 24.7 61 0.0013 29.6 2.6 19 173-191 264-282 (530)
316 smart00864 Tubulin Tubulin/Fts 24.6 1.1E+02 0.0023 24.1 3.7 32 8-39 69-100 (192)
317 PRK04966 hypothetical protein; 24.5 1E+02 0.0022 20.8 2.9 25 5-29 32-56 (72)
318 PRK01045 ispH 4-hydroxy-3-meth 24.5 79 0.0017 27.1 3.0 20 171-190 200-219 (298)
319 PRK09939 putative oxidoreducta 24.3 91 0.002 30.3 3.7 26 10-35 346-371 (759)
320 PRK12360 4-hydroxy-3-methylbut 24.3 75 0.0016 27.0 2.8 20 171-190 199-218 (281)
321 PRK12354 carbamate kinase; Rev 24.3 3.5E+02 0.0076 23.3 7.0 72 12-103 165-237 (307)
322 PHA02768 hypothetical protein; 24.3 65 0.0014 20.5 1.9 40 117-161 6-47 (55)
323 COG2910 Putative NADH-flavin r 24.3 1.2E+02 0.0025 24.7 3.7 29 4-32 77-107 (211)
324 cd02772 MopB_NDH-1_NuoG2 MopB_ 24.2 91 0.002 27.3 3.5 25 10-34 239-263 (414)
325 PF01396 zf-C4_Topoisom: Topoi 24.2 36 0.00078 19.8 0.6 12 149-160 4-15 (39)
326 COG0068 HypF Hydrogenase matur 24.0 1.5E+02 0.0033 28.7 5.0 40 148-191 175-219 (750)
327 PRK00358 pyrH uridylate kinase 24.0 1.4E+02 0.0031 24.0 4.4 30 8-38 25-54 (231)
328 PF00096 zf-C2H2: Zinc finger, 24.0 35 0.00075 16.7 0.5 13 118-130 2-14 (23)
329 PF04864 Alliinase_C: Allinase 23.9 67 0.0014 28.3 2.5 26 6-31 46-75 (363)
330 COG2051 RPS27A Ribosomal prote 23.9 29 0.00064 23.0 0.2 17 109-125 12-28 (67)
331 PRK14557 pyrH uridylate kinase 23.7 1.4E+02 0.0031 24.7 4.4 26 7-32 28-53 (247)
332 PF00782 DSPc: Dual specificit 23.7 1.2E+02 0.0025 21.7 3.5 27 11-37 62-88 (133)
333 cd04246 AAK_AK-DapG-like AAK_A 23.7 1.7E+02 0.0037 23.7 4.8 32 3-34 12-43 (239)
334 smart00731 SprT SprT homologue 23.7 38 0.00081 25.5 0.9 36 114-158 110-145 (146)
335 cd02753 MopB_Formate-Dh-H Form 23.4 95 0.0021 28.1 3.5 25 10-34 266-290 (512)
336 PLN02980 2-oxoglutarate decarb 23.4 78 0.0017 33.6 3.3 36 10-45 512-558 (1655)
337 smart00852 MoCF_biosynth Proba 23.3 1.1E+02 0.0024 22.3 3.3 27 3-34 42-68 (135)
338 CHL00174 accD acetyl-CoA carbo 23.3 48 0.0011 28.4 1.5 16 116-131 38-53 (296)
339 PF01916 DS: Deoxyhypusine syn 23.3 2.2E+02 0.0047 24.5 5.5 33 7-39 17-53 (299)
340 PF08660 Alg14: Oligosaccharid 23.1 1.4E+02 0.0029 23.3 3.9 27 11-37 81-107 (170)
341 COG1933 Archaeal DNA polymeras 22.8 38 0.00082 28.2 0.7 12 83-94 96-107 (253)
342 PF00994 MoCF_biosynth: Probab 22.7 85 0.0018 23.2 2.6 22 171-192 46-67 (144)
343 PRK00762 hypA hydrogenase nick 22.7 57 0.0012 24.1 1.6 15 114-129 68-82 (124)
344 cd00886 MogA_MoaB MogA_MoaB fa 22.6 77 0.0017 23.9 2.4 25 168-192 46-72 (152)
345 cd02767 MopB_ydeP The MopB_yde 22.5 98 0.0021 28.9 3.5 27 9-35 294-320 (574)
346 PRK07757 acetyltransferase; Pr 22.5 1.1E+02 0.0023 22.3 3.2 35 88-124 104-138 (152)
347 TIGR00515 accD acetyl-CoA carb 22.3 51 0.0011 28.1 1.5 17 116-132 26-42 (285)
348 cd00885 cinA Competence-damage 22.3 78 0.0017 24.6 2.4 21 172-192 49-69 (170)
349 COG3414 SgaB Phosphotransferas 22.3 52 0.0011 23.1 1.3 15 23-37 2-16 (93)
350 cd02766 MopB_3 The MopB_3 CD i 22.1 93 0.002 28.3 3.2 26 10-35 267-292 (501)
351 KOG1718|consensus 22.0 75 0.0016 25.3 2.2 32 8-39 76-111 (198)
352 TIGR02076 pyrH_arch uridylate 21.9 1.5E+02 0.0032 23.7 4.1 27 8-35 19-45 (221)
353 PRK02492 deoxyhypusine synthas 21.9 3E+02 0.0064 24.2 6.1 33 7-39 42-74 (347)
354 PRK05654 acetyl-CoA carboxylas 21.7 52 0.0011 28.1 1.4 16 116-131 27-42 (292)
355 PRK02301 putative deoxyhypusin 21.7 2.9E+02 0.0063 24.0 5.9 33 7-39 41-73 (316)
356 PF12773 DZR: Double zinc ribb 21.7 60 0.0013 19.4 1.3 10 151-160 34-43 (50)
357 PF01726 LexA_DNA_bind: LexA D 21.6 56 0.0012 21.2 1.3 23 64-86 35-57 (65)
358 cd02754 MopB_Nitrate-R-NapA-li 21.3 1.2E+02 0.0025 28.0 3.7 26 10-35 269-294 (565)
359 cd04261 AAK_AKii-LysC-BS AAK_A 21.3 1.9E+02 0.0042 23.3 4.7 32 3-34 12-44 (239)
360 PRK02935 hypothetical protein; 21.1 64 0.0014 23.4 1.5 30 117-160 71-100 (110)
361 PRK05638 threonine synthase; V 21.1 55 0.0012 29.4 1.5 11 117-127 2-12 (442)
362 CHL00162 thiG thiamin biosynth 21.1 65 0.0014 27.2 1.8 21 17-37 182-202 (267)
363 KOG1185|consensus 21.0 99 0.0022 28.7 3.1 28 164-191 259-286 (571)
364 PF15135 UPF0515: Uncharacteri 21.0 64 0.0014 27.1 1.7 14 149-162 177-190 (278)
365 COG0777 AccD Acetyl-CoA carbox 21.0 52 0.0011 28.1 1.2 16 116-131 28-43 (294)
366 PRK12775 putative trifunctiona 21.0 72 0.0016 32.0 2.4 10 149-158 841-850 (1006)
367 cd00758 MoCF_BD MoCF_BD: molyb 20.9 1.4E+02 0.003 21.9 3.4 27 3-34 43-69 (133)
368 COG1867 TRM1 N2,N2-dimethylgua 20.8 1.2E+02 0.0027 26.9 3.5 50 117-179 241-291 (380)
369 COG1592 Rubrerythrin [Energy p 20.7 66 0.0014 25.2 1.7 11 116-126 134-144 (166)
370 PF09889 DUF2116: Uncharacteri 20.7 52 0.0011 21.2 0.9 16 148-163 5-20 (59)
371 smart00195 DSPc Dual specifici 20.7 1.4E+02 0.0031 21.5 3.5 30 8-37 60-93 (138)
372 cd00368 Molybdopterin-Binding 20.7 1.3E+02 0.0027 25.7 3.6 25 10-34 231-255 (374)
373 KOG1687|consensus 20.6 60 0.0013 24.8 1.4 11 180-190 70-80 (168)
374 TIGR03294 FrhG coenzyme F420 h 20.4 1.4E+02 0.0031 24.3 3.7 34 157-190 50-86 (228)
375 PF08747 DUF1788: Domain of un 20.4 1.1E+02 0.0024 22.7 2.7 19 22-44 61-79 (126)
376 COG2453 CDC14 Predicted protei 20.2 1.6E+02 0.0035 22.9 3.8 32 6-37 89-120 (180)
377 PF03358 FMN_red: NADPH-depend 20.1 1.3E+02 0.0028 22.0 3.2 21 9-29 58-78 (152)
378 PF12367 PFO_beta_C: Pyruvate 20.0 1.2E+02 0.0025 20.1 2.5 34 155-189 12-45 (67)
No 1
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=3.2e-58 Score=371.87 Aligned_cols=165 Identities=47% Similarity=0.800 Sum_probs=149.9
Q ss_pred CcEEEEeCCccchhCCCCCCCCCCCcccccc-cCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcC
Q psy13183 23 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEK-KGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSG 101 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~-~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG 101 (192)
|+|||+||||||++|||||||+++|+|+... +..+|.+.|.|.+++||.+|++|++|++.|++.+||||||||||+|||
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~~~~~~~~~~~~~~~~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG 80 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSG 80 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCCccccChHHHhhhhcCCCCHHHHHHHHHHHCCCCceEEecCccchHhHcC
Confidence 6899999999999999999999999998644 466788889999999999999999999999999999999999999999
Q ss_pred CCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHccc
Q psy13183 102 LSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSI 181 (192)
Q Consensus 102 ~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~ 181 (192)
++.++|+|+|||+++++|+.|++.+..+.....+......|+|+ .|||.|||+||||||++|...++++.+++++
T Consensus 81 ~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~-----~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~ 155 (206)
T cd01410 81 LPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCH-----ACGGILKDTIVDFGERLPPENWMGAAAAACR 155 (206)
T ss_pred cCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCC-----CCcCccCCcEEECCCCCCHHHHHHHHHHHhc
Confidence 98899999999999999999999887766554443334567887 9999999999999999999999999999999
Q ss_pred CCEEEEEecCC
Q psy13183 182 ADLSIIESKRG 192 (192)
Q Consensus 182 ~DlllviGTSg 192 (192)
||++||||||+
T Consensus 156 aDlllviGTSl 166 (206)
T cd01410 156 ADLFLCLGTSL 166 (206)
T ss_pred CCEEEEECcCc
Confidence 99999999995
No 2
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.9e-57 Score=377.87 Aligned_cols=171 Identities=26% Similarity=0.493 Sum_probs=146.2
Q ss_pred HHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccc-------ccCCCCccccc-----------ccCCCCCHHHHHH
Q psy13183 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE-------KKGIKPKVNIS-----------FDDAVPTVTHMAI 76 (192)
Q Consensus 15 l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~-------~~~~~p~~~~~-----------~~~~~P~~~H~~l 76 (192)
|+++|++|++|||+||||||++||||||||++|+|+.. .|..+|+.+|. +.+++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 46889999999999999999999999999999999861 35566764322 3478999999999
Q ss_pred HHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhcc--------------------
Q psy13183 77 LELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG-------------------- 136 (192)
Q Consensus 77 ~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-------------------- 136 (192)
++|++.|++.+||||||||||++||+ ++|+|+|||+++.+|+.|++.|+++.+...+.
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD 158 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence 99999999999999999999999997 58999999999999999999987654432111
Q ss_pred ------CCCCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 137 ------QKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 137 ------~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.....|.|+ .|||.|||+||||||++|.+.+++|.+++++||++||||||+
T Consensus 159 ~~~~~~~~~~~p~C~-----~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl 215 (260)
T cd01409 159 LEDEQVAGFRVPECE-----RCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSL 215 (260)
T ss_pred cchhhcccCCCCCCC-----CCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCc
Confidence 001135555 999999999999999999999999999999999999999995
No 3
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=1e-56 Score=370.56 Aligned_cols=173 Identities=33% Similarity=0.557 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccc-cc---------ccCCCCcccccc--------cCCCCCHHH
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-LE---------KKGIKPKVNISF--------DDAVPTVTH 73 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~-~~---------~~~~~p~~~~~~--------~~~~P~~~H 73 (192)
+++++++|++|++|||+|||||||+|||||||+.+|+|+ .. .|.++|+.+|.| ..++||.+|
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~~~~~a~Pn~~H 81 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERLRLLYLAQPNKAH 81 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 578999999999999999999999999999999999998 32 245688888876 358999999
Q ss_pred HHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCC
Q psy13183 74 MAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCR 153 (192)
Q Consensus 74 ~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cg 153 (192)
++|++|++.+++++||||||||||++||+ ++|+||||++...+|+.|+..+..+........ ...|+|+ .||
T Consensus 82 ~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~Cg 153 (250)
T COG0846 82 YALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIED-GLIPRCP-----KCG 153 (250)
T ss_pred HHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhccc-CCCCcCc-----cCC
Confidence 99999999999999999999999999997 499999999999999999988876553332221 2467887 999
Q ss_pred C-cccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 154 G-TLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 154 g-~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
+ .|||+||||||++|.+.++.+.+++++||++||+||||
T Consensus 154 ~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl 193 (250)
T COG0846 154 GPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSL 193 (250)
T ss_pred CccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcce
Confidence 9 99999999999999999999999999999999999997
No 4
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.9e-56 Score=373.21 Aligned_cols=176 Identities=25% Similarity=0.443 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCC-CCccccc---------ccCCCCccccccc-------CCCCCH
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLE---------KKGIKPKVNISFD-------DAVPTV 71 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~-~g~~~~~---------~~~~~p~~~~~~~-------~~~P~~ 71 (192)
...|+.++++|++|++|||+||||||++|||||||++ +|+|+.. .|..+|+..|.|. +++||.
T Consensus 15 ~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~~~f~~~p~~~~~~~~~~~~~~~a~PN~ 94 (271)
T PTZ00409 15 SITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISSDYEIELNP 94 (271)
T ss_pred cccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccHHHHHHChHHHHHHHHHhhhcccCCCCH
Confidence 3468999999999999999999999999999999998 6999742 2445777777652 589999
Q ss_pred HHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhc-c--CCCCCCCCCCCC
Q psy13183 72 THMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSV-G--QKNLNIPCPYRG 148 (192)
Q Consensus 72 ~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~C~~~~ 148 (192)
+|++|++|++.|++.+||||||||||+|||. ++|+|+|||+.+.+|+.|++.+..+...... . .....|.|
T Consensus 95 ~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C---- 168 (271)
T PTZ00409 95 GHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPEC---- 168 (271)
T ss_pred HHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCC----
Confidence 9999999999999999999999999999995 6899999999999999999887654432111 0 01123445
Q ss_pred CCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 149 FRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 149 ~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
+ |||.|||+||||||++|++.+++|.+++++||++||||||+
T Consensus 169 -~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl 210 (271)
T PTZ00409 169 -P-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSS 210 (271)
T ss_pred -C-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCC
Confidence 4 99999999999999999999999999999999999999996
No 5
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=2.4e-55 Score=361.58 Aligned_cols=164 Identities=29% Similarity=0.461 Sum_probs=142.6
Q ss_pred CcEEEEeCCccchhCCCCCCCCCC-Ccccccc---------------cCCCCcccccc------cCCCCCHHHHHHHHHH
Q psy13183 23 KHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF------DDAVPTVTHMAILELV 80 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~---------------~~~~p~~~~~~------~~~~P~~~H~~l~~l~ 80 (192)
|++||+||||||++|||||||+++ |+|+... |..+|+.+|.| .+++||.+|++|++|+
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pn~~H~~la~L~ 80 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELYPGQFKPSVAHYFIKLLE 80 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHhcCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 9997521 33455545543 4799999999999999
Q ss_pred HcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceE
Q psy13183 81 NQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTI 160 (192)
Q Consensus 81 ~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~V 160 (192)
++|++.+||||||||||+|||++.++|+|+|||+++.+|+.|++.|+++.....+. ....|+|+ .|||.|||+|
T Consensus 81 ~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-----~Cgg~lrP~V 154 (235)
T cd01408 81 DKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF-NQEVPKCP-----RCGGLVKPDI 154 (235)
T ss_pred hcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-CCCCccCC-----CCCCCccCcE
Confidence 99999999999999999999998899999999999999999999888765443332 12357787 9999999999
Q ss_pred EECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 161 LDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 161 v~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|||||.+|++.+.++.+++++||++||||||+
T Consensus 155 v~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl 186 (235)
T cd01408 155 VFFGESLPSRFFSHMEEDKEEADLLIVIGTSL 186 (235)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCEEEEECCCC
Confidence 99999999988888989999999999999995
No 6
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.7e-55 Score=363.04 Aligned_cols=172 Identities=32% Similarity=0.509 Sum_probs=151.4
Q ss_pred HHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccc--------ccCCCCcccccc--------cCCCCCHHHHHH
Q psy13183 13 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE--------KKGIKPKVNISF--------DDAVPTVTHMAI 76 (192)
Q Consensus 13 ~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~--------~~~~~p~~~~~~--------~~~~P~~~H~~l 76 (192)
++++++|++|++|||+||||||++|||||||+++|+|+.. .+..+|+..|.| .+++||.+|++|
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~Pn~~H~al 81 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIFPMLEAKPNLAHVLL 81 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhhcccccCCCCHHHHHH
Confidence 5789999999999999999999999999999999999642 133456666654 478999999999
Q ss_pred HHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 77 LELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 77 ~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
++|+++|++.+||||||||||+|||. ++|+|+|||+++++|+.|++.|+.+.....+. ....|+|+ .|||.|
T Consensus 82 a~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~Cp-----~Cgg~l 153 (244)
T PRK14138 82 AKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKLE-KSDVPRCD-----DCSGLI 153 (244)
T ss_pred HHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHHh-cCCCCCCC-----CCCCeE
Confidence 99999999999999999999999994 68999999999999999999988766554332 23467787 999999
Q ss_pred cceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 157 HDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 157 rP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
||+||||||.+|...++++.+++++||++||||||+
T Consensus 154 rP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl 189 (244)
T PRK14138 154 RPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSL 189 (244)
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCC
Confidence 999999999999999999999999999999999995
No 7
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=5.2e-55 Score=374.17 Aligned_cols=177 Identities=28% Similarity=0.474 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCCccchhCCCCCCCCC-CCcccccc---------------cCCCCcccccc------
Q psy13183 9 DKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEK---------------KGIKPKVNISF------ 64 (192)
Q Consensus 9 ~~~l~~l~~~i~~--a~~ivv~tGAGiS~~sGipdfr~~-~g~~~~~~---------------~~~~p~~~~~~------ 64 (192)
+.+|++++++|++ +++|||+||||||++|||||||++ +|+|+... +..+|+.+|.|
T Consensus 14 ~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~~~ 93 (349)
T PTZ00410 14 EPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDL 93 (349)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHhhc
Confidence 4568899999998 679999999999999999999999 59997521 23455555544
Q ss_pred --cCCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCC
Q psy13183 65 --DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNI 142 (192)
Q Consensus 65 --~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 142 (192)
.+++||.+|++|+.|++.|++.+||||||||||++||+++++|+|+|||+++++|..|++.|+.+.....+. ....|
T Consensus 94 ~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~vP 172 (349)
T PTZ00410 94 WPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEAR-SGKVP 172 (349)
T ss_pred ccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhh-cCCCC
Confidence 258999999999999999999999999999999999999899999999999999999999887655433221 22467
Q ss_pred CCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 143 PCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 143 ~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.|+ .|||.|||+||||||++|+..++ +.+++++||++||||||+
T Consensus 173 ~C~-----~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL 216 (349)
T PTZ00410 173 HCS-----TCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSL 216 (349)
T ss_pred CCC-----CCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCC
Confidence 787 99999999999999999998888 889999999999999995
No 8
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=1.2e-54 Score=354.75 Aligned_cols=165 Identities=33% Similarity=0.551 Sum_probs=144.5
Q ss_pred HHhCCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc--------cCCCCCHHHHHHHHHHH
Q psy13183 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTHMAILELVN 81 (192)
Q Consensus 19 i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~--------~~~~P~~~H~~l~~l~~ 81 (192)
|++|++|||+||||||++|||||||+++|+|+.. .+..+|+..|.| .+++||.+|++|++|++
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~ 80 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEIILGLLEAQPNKAHYFLAELEK 80 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999999999999742 234567666654 37899999999999999
Q ss_pred cCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 82 QGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 82 ~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
.|++.+||||||||||+|||. ++|+|+||++++++|+.|++.|+++.... + .....|+|+ .|||.|||+||
T Consensus 81 ~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~~~-~-~~~~~p~C~-----~Cgg~lrP~Vv 151 (222)
T cd01413 81 QGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEVKY-A-KKHEVPRCP-----KCGGIIRPDVV 151 (222)
T ss_pred cCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHHHH-h-ccCCCCcCC-----CCCCccCCCEE
Confidence 999999999999999999994 68999999999999999999988765421 1 122457787 99999999999
Q ss_pred ECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 162 DWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 162 ~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
||||.+|++.++++.+++++||++||||||+
T Consensus 152 ~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl 182 (222)
T cd01413 152 LFGEPLPQALLREAIEAAKEADLFIVLGSSL 182 (222)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCEEEEEccCC
Confidence 9999999999999999999999999999996
No 9
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.9e-54 Score=362.38 Aligned_cols=177 Identities=27% Similarity=0.490 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccc------cCCCCc---ccc--------cccCCCCCH
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------KGIKPK---VNI--------SFDDAVPTV 71 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~------~~~~p~---~~~--------~~~~~~P~~ 71 (192)
...|++++++|++|++|||+||||||++||||||||++|+|.... +..+|. .+| .+..++||.
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn~ 85 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPNA 85 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCCH
Confidence 356788999999999999999999999999999999999997421 222232 122 235789999
Q ss_pred HHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhcc---------------
Q psy13183 72 THMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG--------------- 136 (192)
Q Consensus 72 ~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~--------------- 136 (192)
+|++|++|+++|++++||||||||||+|||. ++|+|+|||+..++|++|++.+.++.....+.
T Consensus 86 ~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (285)
T PRK05333 86 AHHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAP 163 (285)
T ss_pred HHHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCC
Confidence 9999999999999999999999999999994 68999999999999999998877553321110
Q ss_pred -----------CCCCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 137 -----------QKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 137 -----------~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.....|+|+ .|||.|||+||||||++|+..++++.+++++||++||||||.
T Consensus 164 ~~~~~~~~~~~~~~~iP~C~-----~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl 225 (285)
T PRK05333 164 DGDADLEWAAFDHFRVPACP-----ACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSL 225 (285)
T ss_pred CccccccccccccCCCCCCC-----CCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCc
Confidence 001245565 999999999999999999999999999999999999999995
No 10
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.3e-53 Score=352.68 Aligned_cols=170 Identities=38% Similarity=0.600 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc--------cCCCCCHHH
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTH 73 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~--------~~~~P~~~H 73 (192)
+|++++++|++|++|||+||||||++|||||||+.+|+|+.. .+..+|+..|.| .+++||.+|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~~~~Pn~~H 81 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARDPELVWKFYNERRRQLLDAKPNAAH 81 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHHHhccHHHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Confidence 578999999999999999999999999999999999999631 234567766654 479999999
Q ss_pred HHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCC
Q psy13183 74 MAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCR 153 (192)
Q Consensus 74 ~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cg 153 (192)
++|++|++.|++++||||||||||++||. ++|+|+||++.+.+|+.|++.|..+.... ...|+|+ .||
T Consensus 82 ~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~-----~Cg 149 (242)
T PRK00481 82 RALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYLK-----PEPPRCP-----KCG 149 (242)
T ss_pred HHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhcc-----CCCCCCC-----CCC
Confidence 99999999999999999999999999995 79999999999999999998887655431 2356677 999
Q ss_pred CcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 154 GTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 154 g~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|.|||+||||||.+|+..++++.++++++|++||||||+
T Consensus 150 g~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl 188 (242)
T PRK00481 150 GILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSL 188 (242)
T ss_pred CccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCc
Confidence 999999999999999999999999999999999999995
No 11
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.8e-53 Score=347.32 Aligned_cols=163 Identities=32% Similarity=0.502 Sum_probs=143.0
Q ss_pred HHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccc------------cCCCCccccc-------ccCCCCCHHHHH
Q psy13183 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------KGIKPKVNIS-------FDDAVPTVTHMA 75 (192)
Q Consensus 15 l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~------------~~~~p~~~~~-------~~~~~P~~~H~~ 75 (192)
|+++|++|++|||+||||||++|||||||+++|+|+... +..+|+.+|. +.+++||.+|++
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~ 80 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENLYFPDAKPNIIHQK 80 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHhhCCCCCCCHHHHH
Confidence 467899999999999999999999999999999998532 1344555553 357899999999
Q ss_pred HHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 76 ILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 76 l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
|++|++.+ +.+||||||||||++||. ++|+|+||++.+.+|+.|++.++++... ..|.|+ .|||+
T Consensus 81 La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~-------~~p~C~-----~Cgg~ 145 (225)
T cd01411 81 MAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEYL-------KSPYHA-----KCGGV 145 (225)
T ss_pred HHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhcC-------CCCCCC-----CCCCE
Confidence 99999987 899999999999999994 6899999999999999999887654321 257787 99999
Q ss_pred ccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 156 LHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 156 lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|||+||||||.+|.+.++++.++++++|++||||||+
T Consensus 146 lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl 182 (225)
T cd01411 146 IRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSF 182 (225)
T ss_pred eCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCC
Confidence 9999999999999999999999999999999999995
No 12
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.5e-52 Score=341.52 Aligned_cols=161 Identities=34% Similarity=0.644 Sum_probs=140.8
Q ss_pred CcEEEEeCCccchhCCCCCCCCCCCcccccc----------cCCCCcccccc-------cCCCCCHHHHHHHHHHHcCCc
Q psy13183 23 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEK----------KGIKPKVNISF-------DDAVPTVTHMAILELVNQGKV 85 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~----------~~~~p~~~~~~-------~~~~P~~~H~~l~~l~~~g~~ 85 (192)
|+|||+||||||++|||||||+++|+|+... +..+|+..|.| .+++||.+|++|++|++.|++
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPLNAQPNPAHRALAELERKGKL 80 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCChhhccCCHHHHHHCHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999997532 13567666665 379999999999999999999
Q ss_pred cEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEECCC
Q psy13183 86 HYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEH 165 (192)
Q Consensus 86 ~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge 165 (192)
.+||||||||||++||++ +|+|+||++..++|+.|++.++.+.....+ .....|.|+ .|||.|||+||||||
T Consensus 81 ~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C~-----~Cg~~lrP~Vv~fgE 152 (218)
T cd01407 81 KRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADI-DREEVPRCP-----KCGGLLRPDVVFFGE 152 (218)
T ss_pred eeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhh-ccCCCCcCC-----CCCCccCCCeEECCC
Confidence 999999999999999985 999999999999999999988765433222 123467888 999999999999999
Q ss_pred CCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 166 NLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 166 ~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.+|.. ++++.++++++|++||||||+
T Consensus 153 ~~p~~-~~~a~~~~~~~Dl~lvlGTSl 178 (218)
T cd01407 153 SLPEE-LDEAAEALAKADLLLVIGTSL 178 (218)
T ss_pred CCcHH-HHHHHHHHhcCCEEEEeCCCc
Confidence 99998 999999999999999999995
No 13
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.6e-51 Score=339.85 Aligned_cols=158 Identities=28% Similarity=0.452 Sum_probs=132.9
Q ss_pred HhCCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc----------cCCCCCHHHHHHHHHH
Q psy13183 20 DKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF----------DDAVPTVTHMAILELV 80 (192)
Q Consensus 20 ~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~----------~~~~P~~~H~~l~~l~ 80 (192)
++|++|||+||||||++|||||||+++|+|+.. .|..+|+..|.| .+++||.+|++|++|+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~~~Pn~~H~~L~~Le 81 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERRRALLSSSVKPNKAHFALAKLE 81 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCChhhcCCHHHHHhCHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999642 244566655554 3679999999999999
Q ss_pred Hc--CCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCC--Ccc
Q psy13183 81 NQ--GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCR--GTL 156 (192)
Q Consensus 81 ~~--g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cg--g~l 156 (192)
+. +++++||||||||||+|||. ++|+|+||++++++|+.|++.|.++.... ...|.|+ .|| |.+
T Consensus 82 ~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~-----~Cg~~g~l 149 (242)
T PTZ00408 82 REYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRCK-----CCGCVGTL 149 (242)
T ss_pred HhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCccc-----cCCCCCCC
Confidence 86 88899999999999999995 68999999999999999999887643221 1246777 787 999
Q ss_pred cceEEECCC-CCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 157 HDTILDWEH-NLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 157 rP~Vv~fge-~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
||+|||||| .+|.+.+++ ++++||++||||||+
T Consensus 150 rP~vV~FGE~~~~~~~~~~---~~~~~DlllviGTSl 183 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIES---VMSKTDLFVAVGTSG 183 (242)
T ss_pred CCCEEEcCCCCCcHHHHHH---HHHhCCEEEEEccCC
Confidence 999999999 888766654 478899999999995
No 14
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=6.1e-52 Score=328.15 Aligned_cols=154 Identities=37% Similarity=0.672 Sum_probs=120.4
Q ss_pred CCccchhCCCCCCCC-CCCcccccc---------cCCCCccccc-c---------cCCCCCHHHHHHHHHHHcCCccEEE
Q psy13183 30 GAGISTSAGIPDFRG-PNGVWTLEK---------KGIKPKVNIS-F---------DDAVPTVTHMAILELVNQGKVHYVV 89 (192)
Q Consensus 30 GAGiS~~sGipdfr~-~~g~~~~~~---------~~~~p~~~~~-~---------~~~~P~~~H~~l~~l~~~g~~~~vi 89 (192)
|||||++|||||||+ ++|+|+..+ +..+|.+.|. | .+++||.+|++|++|++.|++++||
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~Pn~~H~~La~L~~~g~~~~vi 80 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKPEELATPEAFFSDPEFVWEKFYRFRRKVISKDAEPNPGHRALAELEKKGKLKRVI 80 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHCTCTS---HHHHHHHHHHHTTSEEEEE
T ss_pred CCccchhhCCCccccCCCCcceeeeccccccccccccccchhhhHHHHHhhhhccccCCCChhHHHHHHHHHhhhhccce
Confidence 899999999999999 899997532 1122333443 2 3799999999999999999999999
Q ss_pred eccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEECCCCCCH
Q psy13183 90 SQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQ 169 (192)
Q Consensus 90 TqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~ 169 (192)
||||||||+|||++ +|+|||||++.++|+.|++.+..+....... ....++|+ .||+.|||+||||||.+|
T Consensus 81 TQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~~~C~-----~C~~~lrp~vv~fgE~~~- 151 (178)
T PF02146_consen 81 TQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSID-EEEPPRCP-----KCGGLLRPDVVLFGESLP- 151 (178)
T ss_dssp ES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHHH-TTSSCBCT-----TTSCBEEEEE--BTSB-S-
T ss_pred ecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhccccc-cccccccc-----ccCccCCCCeeecCCCCH-
Confidence 99999999999986 9999999999999999999988766544332 23456777 999999999999999999
Q ss_pred HHHHHHHHHcccCCEEEEEecCC
Q psy13183 170 KDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 170 ~~~~~a~~~~~~~DlllviGTSg 192 (192)
+.+..+.+++++|||+||||||+
T Consensus 152 ~~~~~~~~~~~~~Dl~lviGTSl 174 (178)
T PF02146_consen 152 EEIEEAIEDAEEADLLLVIGTSL 174 (178)
T ss_dssp HHHHHHHHHHHH-SEEEEESS-S
T ss_pred HHHHHHHHHHHcCCEEEEEccCc
Confidence 78889999999999999999995
No 15
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=7.6e-51 Score=332.60 Aligned_cols=158 Identities=30% Similarity=0.520 Sum_probs=138.6
Q ss_pred CcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc--------cCCCCCHHHHHHHHHHHcCCc
Q psy13183 23 KHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTHMAILELVNQGKV 85 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~--------~~~~P~~~H~~l~~l~~~g~~ 85 (192)
|+|||+||||||++|||||||+.+|+|+.. .+..+|+..|.| ..++||.+|++|++|++.+++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~~~~~~~~~~f~~~p~~~w~f~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKALRAQPNPAHLALAELERRLPN 80 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCChhhcCCHHHHHHCHHHHHHHHHHHHHHccccCCCHHHHHHHHHHhcCCC
Confidence 579999999999999999999999999642 234567666655 368999999999999999989
Q ss_pred cEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEECCC
Q psy13183 86 HYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEH 165 (192)
Q Consensus 86 ~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge 165 (192)
++||||||||||++||+ ++|+|+||++..++|..|++.+..+... .....|+|+ .|||.|||+||||||
T Consensus 81 ~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~----~~~~~p~C~-----~Cgg~lrp~Vv~fge 149 (224)
T cd01412 81 VLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI----PEEELPRCP-----KCGGLLRPGVVWFGE 149 (224)
T ss_pred eEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh----hccCCCCCC-----CCCCccCCceEECCC
Confidence 99999999999999998 7999999999999999999988665221 123467888 999999999999999
Q ss_pred CCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 166 NLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 166 ~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.+|. .++.+.++++++|++||||||+
T Consensus 150 ~~p~-~~~~~~~~~~~~dl~lvlGTsl 175 (224)
T cd01412 150 SLPL-ALLEAVEALAKADLFLVIGTSG 175 (224)
T ss_pred CCHH-HHHHHHHHHHcCCEEEEECcCc
Confidence 9998 8999999999999999999995
No 16
>KOG1905|consensus
Probab=100.00 E-value=1.7e-50 Score=333.53 Aligned_cols=190 Identities=48% Similarity=0.844 Sum_probs=178.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHH
Q psy13183 1 TFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELV 80 (192)
Q Consensus 1 ~~d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~ 80 (192)
.||+++.++.++++|+++|++|+++||+||||||++||||||||++|+|++++.+.+ .+...|..|.|+.+|++|.+|+
T Consensus 34 ~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~-~~~~df~~ArPt~THmai~~Lh 112 (353)
T KOG1905|consen 34 EFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD-KFGVDFSEARPTVTHMAIVALH 112 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc-ccCCchhhcCCcchHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999988888 7788899999999999999999
Q ss_pred HcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCC---CCCCCCccc
Q psy13183 81 NQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRG---FRPCRGTLH 157 (192)
Q Consensus 81 ~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~---~~~Cgg~lr 157 (192)
+.|.+.+|||||+||||.|+|+|.+++.|+|||++-.+|.+|..+|.++..+..++..++...|.... |+.|-|.|+
T Consensus 113 r~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~R~ct~~k~~~~rscrg~l~ 192 (353)
T KOG1905|consen 113 RAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATGRHCTGRKCRKCRSCRGTLR 192 (353)
T ss_pred HcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecccccccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999988888887777777777543 556668889
Q ss_pred ceEEECCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 158 DTILDWEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 158 P~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
..+..|...+|...|+.|.++..+||++|++|||
T Consensus 193 d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTS 226 (353)
T KOG1905|consen 193 DFGLDWEDELPLNDLDRATKAAKRADLILCLGTS 226 (353)
T ss_pred hccccccccCCchhhHHHHHHhhhcceEEEeccc
Confidence 9999999999999999999999999999999998
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=8.3e-48 Score=313.36 Aligned_cols=161 Identities=36% Similarity=0.610 Sum_probs=141.3
Q ss_pred CcEEEEeCCccchhCCCCCCCCCC-Ccccccc----------cCCCCcccccc--------cCCCCCHHHHHHHHHHHcC
Q psy13183 23 KHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK----------KGIKPKVNISF--------DDAVPTVTHMAILELVNQG 83 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~----------~~~~p~~~~~~--------~~~~P~~~H~~l~~l~~~g 83 (192)
|++|++||||||++|||||||+.+ |+|+... +..+|+..|.| .+++||.+|++|++|.+.+
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~l~~l~~~~ 80 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYTPLDAKPNPAHRALAELERKG 80 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHhhhCcCCCCHHHHHHHHHHHcC
Confidence 579999999999999999999998 9997432 23345555543 3799999999999999999
Q ss_pred CccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEEC
Q psy13183 84 KVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDW 163 (192)
Q Consensus 84 ~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~f 163 (192)
++.+|||||||+||++||++.++|+++||++...+|+.|++.+..+..... ...|+|+ .|||.|||+|++|
T Consensus 81 ~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C~-----~C~~~l~p~v~~f 151 (222)
T cd00296 81 KLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRCP-----KCGGLLRPDVVDF 151 (222)
T ss_pred CCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCCC-----CCCCcccCceEEC
Confidence 999999999999999999988899999999999999999988876654422 3467887 9999999999999
Q ss_pred CCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 164 EHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 164 ge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
||.+|+..+.++.+++.++|++||||||.
T Consensus 152 ge~~~~~~~~~~~~~~~~~d~llviGtSl 180 (222)
T cd00296 152 GEALPKEWFDRALEALLEADLVLVIGTSL 180 (222)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEECCCc
Confidence 99999988899999999999999999994
No 18
>KOG2683|consensus
Probab=100.00 E-value=1.3e-47 Score=307.92 Aligned_cols=186 Identities=24% Similarity=0.422 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCC-CcccccccC--------CCC---c-------ccc-c
Q psy13183 4 SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKG--------IKP---K-------VNI-S 63 (192)
Q Consensus 4 ~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~~~--------~~p---~-------~~~-~ 63 (192)
++...+++|.++..+|..+++++|+||||||++|||||||+++ |+|...... +.. + ..| .
T Consensus 27 ~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rSs~~RqRYWaRnf~gWpr 106 (305)
T KOG2683|consen 27 ADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRSSRCRQRYWARNFVGWPR 106 (305)
T ss_pred CCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhhhHHHHHHHHHhhcCcch
Confidence 4445578999999999999999999999999999999999998 999742211 110 0 112 4
Q ss_pred ccCCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhcc-------
Q psy13183 64 FDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG------- 136 (192)
Q Consensus 64 ~~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~------- 136 (192)
|..++||++|++|++|++.|+..|+||||||+||.|||. +.+.|+||+.....|+.|+...++..++..+.
T Consensus 107 Fs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fk 184 (305)
T KOG2683|consen 107 FSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPGFK 184 (305)
T ss_pred hhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCcchh
Confidence 789999999999999999999999999999999999996 67999999999999999998887766543221
Q ss_pred --------CCCCCCCC-C--------CCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 137 --------QKNLNIPC-P--------YRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 137 --------~~~~~~~C-~--------~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
..|++..- + -+.|..|||.|||+|+||||++|.+..+-+.+.+.+||-+||+|||
T Consensus 185 e~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsS 256 (305)
T KOG2683|consen 185 EAIVSPGHQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSS 256 (305)
T ss_pred hhccCccccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechh
Confidence 11111000 0 0345599999999999999999999999999999999999999998
No 19
>KOG2684|consensus
Probab=100.00 E-value=4.3e-47 Score=325.38 Aligned_cols=176 Identities=31% Similarity=0.461 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccc---------------cCCCCcccccc------cCCC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK---------------KGIKPKVNISF------DDAV 68 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~---------------~~~~p~~~~~~------~~~~ 68 (192)
+.++.+..++++||+|||+||||||+++|||||||.+|+|+..+ |+.+|..+..| ....
T Consensus 76 ~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~~~~~ 155 (412)
T KOG2684|consen 76 NTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELKPPSNN 155 (412)
T ss_pred ccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhcCCccC
Confidence 45788899999999999999999999999999999999997432 22233222222 2456
Q ss_pred CCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCC
Q psy13183 69 PTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRG 148 (192)
Q Consensus 69 P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~ 148 (192)
|++.|.+|+.|++.||+.++||||||+|+++||+..++++++|||+....|+.|+..++.+.+...+. ....|.||
T Consensus 156 ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~-~~~vp~CP--- 231 (412)
T KOG2684|consen 156 PSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIR-NQEVPVCP--- 231 (412)
T ss_pred CchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHh-cCcCccCc---
Confidence 99999999999999999999999999999999998888999999999999999999888775554332 33455665
Q ss_pred CCCCC------------------CcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 149 FRPCR------------------GTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 149 ~~~Cg------------------g~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
.|. |.|||+||||||.+|+............+||+||||||
T Consensus 232 --~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTS 290 (412)
T KOG2684|consen 232 --DCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTS 290 (412)
T ss_pred --ccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCc
Confidence 332 39999999999999999998888888889999999998
No 20
>KOG2682|consensus
Probab=100.00 E-value=1.5e-45 Score=296.40 Aligned_cols=176 Identities=25% Similarity=0.440 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHh--CCcEEEEeCCccchhCCCCCCCCCC-Ccccccc---------------cCCCCcccccc------c
Q psy13183 10 KKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF------D 65 (192)
Q Consensus 10 ~~l~~l~~~i~~--a~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~---------------~~~~p~~~~~~------~ 65 (192)
-.++.+++++++ .++++++.|||||+++||||||++. |+|+..+ |..+|+-++.. .
T Consensus 22 l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyPg 101 (314)
T KOG2682|consen 22 LTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYPG 101 (314)
T ss_pred hhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCCC
Confidence 358999999997 5799999999999999999999994 8987422 33455433321 4
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccC-ccccccccchhhhhccCCCCCCCC
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN-KCERQFVRKSATNSVGQKNLNIPC 144 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~-~C~~~~~~~~~~~~~~~~~~~~~C 144 (192)
+.+||.+|++|+.|.++|.+.++||||||+|++.||++.+.++|.||++.+.+|. .|++.|+.+++...+... ..|+|
T Consensus 102 nfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~~~-~vpkC 180 (314)
T KOG2682|consen 102 NFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIMSE-VVPKC 180 (314)
T ss_pred CcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHHhc-cCCCC
Confidence 7899999999999999999999999999999999999999999999999999999 599999988877766544 35788
Q ss_pred CCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 145 PYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 145 ~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
+ .|+|++||+||||||.+|...++.-......+||+||||||
T Consensus 181 ~-----vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTS 222 (314)
T KOG2682|consen 181 E-----VCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTS 222 (314)
T ss_pred c-----hhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccc
Confidence 8 99999999999999999999998888889999999999998
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=99.24 E-value=7.1e-12 Score=103.33 Aligned_cols=96 Identities=25% Similarity=0.302 Sum_probs=64.6
Q ss_pred CcEEEEeCCccchhCCCCCCCCC-CCcccccc--------------------------cCCCC-c---cccc--ccCCCC
Q psy13183 23 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEK--------------------------KGIKP-K---VNIS--FDDAVP 69 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdfr~~-~g~~~~~~--------------------------~~~~p-~---~~~~--~~~~~P 69 (192)
+++|+|.|||+|.++|+|+|++- ..+++... +.... . ..+. -...+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47899999999999999998753 12221000 00000 0 0011 135789
Q ss_pred CHHHHHHHHHHHcCC-ccEEEeccCcchhhhcC----C----------------CCCceEEeCccccccc
Q psy13183 70 TVTHMAILELVNQGK-VHYVVSQNIDGLHLRSG----L----------------SRKYLAELHGNMYVDQ 118 (192)
Q Consensus 70 ~~~H~~l~~l~~~g~-~~~viTqNiD~L~~~aG----~----------------~~~~v~elHG~~~~~~ 118 (192)
+..|.+|++|...+. ...|||+|+|.|.++|- . ....|+.+||++....
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~~~ 150 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDDDE 150 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCCCC
Confidence 999999999987654 66899999999999861 0 1236888888888754
No 22
>PF13289 SIR2_2: SIR2-like domain
Probab=93.42 E-value=0.054 Score=40.13 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.5
Q ss_pred EEEeccCcchhhhc
Q psy13183 87 YVVSQNIDGLHLRS 100 (192)
Q Consensus 87 ~viTqNiD~L~~~a 100 (192)
.|||+|.|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 68999999999887
No 23
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=90.08 E-value=0.21 Score=29.25 Aligned_cols=34 Identities=24% Similarity=0.634 Sum_probs=21.2
Q ss_pred cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
+..+|..|++.+...... .. .....|| .||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~~---~~-~~~~~CP-----~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKI---SD-DPLATCP-----ECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEec---CC-CCCCCCC-----CCCCcce
Confidence 456999999987643321 11 2344576 9998654
No 24
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=90.01 E-value=0.19 Score=30.14 Aligned_cols=35 Identities=26% Similarity=0.782 Sum_probs=21.9
Q ss_pred ccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCC-ccc
Q psy13183 114 MYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRG-TLH 157 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg-~lr 157 (192)
++..+|.+|+..+.... .+.+ .....|| .||+ .++
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~-~~~~~CP-----~Cg~~~~~ 38 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISE-DDPVPCP-----ECGSTEVR 38 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCC-CCCCcCC-----CCCCCceE
Confidence 45679999998875432 2222 3345677 9998 443
No 25
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=82.62 E-value=1.1 Score=33.16 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
+++++++|++|++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998844
No 26
>PRK12496 hypothetical protein; Provisional
Probab=79.86 E-value=1.1 Score=34.93 Aligned_cols=38 Identities=11% Similarity=0.448 Sum_probs=24.1
Q ss_pred ceEEeC-----ccc-cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 106 YLAELH-----GNM-YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 106 ~v~elH-----G~~-~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
++..+| ... +..+|..|++.|+.+. ....|| .||..++
T Consensus 111 ~v~~~~~~~i~~~~~w~~~C~gC~~~~~~~~---------~~~~C~-----~CG~~~~ 154 (164)
T PRK12496 111 KFENIKTKGIKKVIKWRKVCKGCKKKYPEDY---------PDDVCE-----ICGSPVK 154 (164)
T ss_pred eEeccccccchhheeeeEECCCCCccccCCC---------CCCcCC-----CCCChhh
Confidence 466666 222 2357999999986432 223577 9998874
No 27
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=79.59 E-value=1.3 Score=27.33 Aligned_cols=31 Identities=26% Similarity=0.700 Sum_probs=19.0
Q ss_pred cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCC
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRG 154 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg 154 (192)
+..+|.+|+..|.... .+.+ .....|| .||+
T Consensus 4 Yey~C~~Cg~~fe~~~---~~~~-~~~~~CP-----~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQ---KMSD-DPLATCP-----ECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEE---ecCC-CCCCCCC-----CCCC
Confidence 4568999999876432 1111 2234576 8996
No 28
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=79.23 E-value=1.1 Score=26.08 Aligned_cols=30 Identities=27% Similarity=0.569 Sum_probs=19.0
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
..|..|++.|....... .....|. .||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~pP-----~~~~~Cd-----~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP-----KVEGVCD-----NCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBCT-----TTTEBE
T ss_pred cCcCCCCCccccccCCC-----CCCCccC-----CCCCee
Confidence 57999999987543211 1234576 899865
No 29
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=78.02 E-value=1.8 Score=32.03 Aligned_cols=18 Identities=22% Similarity=0.184 Sum_probs=15.2
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|++
T Consensus 70 ~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHSSEEEEESSS
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 456778999999999975
No 30
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=76.15 E-value=1.6 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=19.7
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
..|+.|++.|..+... +........|+ .||..+
T Consensus 3 ~~CP~C~~~~~v~~~~--~~~~~~~v~C~-----~C~~~~ 35 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQ--LGANGGKVRCG-----KCGHVW 35 (38)
T ss_pred EECCCCCCEEEeCHHH--cCCCCCEEECC-----CCCCEE
Confidence 5799999987654422 21111124566 898765
No 31
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=75.98 E-value=1.7 Score=34.39 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=24.0
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP 158 (192)
...|+.|+.+|....... ....|| .||+.|..
T Consensus 117 ~Y~Cp~C~~rytf~eA~~------~~F~Cp-----~Cg~~L~~ 148 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAME------YGFRCP-----QCGEMLEE 148 (178)
T ss_pred EEECCCCCcEEeHHHHhh------cCCcCC-----CCCCCCee
Confidence 467999999998765432 356787 99998866
No 32
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=74.83 E-value=1.8 Score=33.48 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=23.2
Q ss_pred cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
....|+.|+.+|..+.... ....|| .||+.|.
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~------~~F~Cp-----~Cg~~L~ 139 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME------LNFTCP-----RCGAMLD 139 (158)
T ss_pred CeEECCCCCcEeeHHHHHH------cCCcCC-----CCCCEee
Confidence 3467999999998766443 356787 9999753
No 33
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=73.85 E-value=4.7 Score=31.78 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCccch
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
-+.++++|++|++.|++.|.|+..
T Consensus 24 p~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 24 PKIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred HHHHHHHHHhCCCcEEEECcCccc
Confidence 468899999999999999999975
No 34
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=72.84 E-value=2 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=18.7
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
..+|.+|+..+..+... ....|| .||+.+
T Consensus 3 ~y~C~~CG~~~~~~~~~-------~~~~Cp-----~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEYG-------TGVRCP-----YCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCCC-------CceECC-----CCCCeE
Confidence 46899999987554311 134676 999743
No 35
>PRK14873 primosome assembly protein PriA; Provisional
Probab=72.58 E-value=26 Score=33.48 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccc
Q psy13183 70 TVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 125 (192)
Q Consensus 70 ~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~ 125 (192)
.....+|.+-.+.| ..++-.| |-|+ ..++-++-.=+..+|.+|+-.
T Consensus 356 ~~l~~~i~~~L~~g--qvll~ln------RrGy--ap~l~C~~Cg~~~~C~~C~~~ 401 (665)
T PRK14873 356 SLAFRAARDALEHG--PVLVQVP------RRGY--VPSLACARCRTPARCRHCTGP 401 (665)
T ss_pred HHHHHHHHHHHhcC--cEEEEec------CCCC--CCeeEhhhCcCeeECCCCCCc
Confidence 34555555555556 4555444 4455 256777777777777777753
No 36
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=71.93 E-value=4 Score=33.69 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEeCCccchhC
Q psy13183 7 DFDKKIKVLSEWIDKA-KHVVLHTGAGISTSA 37 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a-~~ivv~tGAGiS~~s 37 (192)
+..+.++.|+++|+.| .+|.|+.|||+.++.
T Consensus 153 sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N 184 (241)
T COG3142 153 SALEGLDLLKRLIEQAKGRIIIMAGAGVRAEN 184 (241)
T ss_pred chhhhHHHHHHHHHHhcCCEEEEeCCCCCHHH
Confidence 3456788999999987 799999999998664
No 37
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.69 E-value=2.5 Score=28.82 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=26.6
Q ss_pred cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc-----cceEEECCC
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL-----HDTILDWEH 165 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l-----rP~Vv~fge 165 (192)
+...|..|+..++ +++.+.+.| ...|+ .||+.| ++.|+|=|-
T Consensus 11 Y~Y~c~~cg~~~d---vvq~~~ddp-lt~ce-----~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 11 YSYECTECGNRFD---VVQAMTDDP-LTTCE-----ECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred eEEeecccchHHH---HHHhcccCc-cccCh-----hhChHHHHhhccceEEEecc
Confidence 3467999998764 333343322 23566 999877 678887553
No 38
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=70.95 E-value=4.1 Score=31.77 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCcEEEEeCCccc
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
-++++++|++|++.+++.|.|+.
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcC
Confidence 47899999999999999999996
No 39
>PRK06260 threonine synthase; Validated
Probab=70.84 E-value=2.7 Score=37.17 Aligned_cols=29 Identities=28% Similarity=0.780 Sum_probs=20.0
Q ss_pred cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
+.++|..|+++|+.+. ....|+ .||++|.
T Consensus 2 ~~~~C~~cg~~~~~~~---------~~~~Cp-----~cg~~l~ 30 (397)
T PRK06260 2 YWLKCIECGKEYDPDE---------IIYTCP-----ECGGLLE 30 (397)
T ss_pred CEEEECCCCCCCCCCC---------ccccCC-----CCCCeEE
Confidence 4589999999986432 123576 8888754
No 40
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=70.83 E-value=2.3 Score=32.37 Aligned_cols=36 Identities=19% Similarity=0.529 Sum_probs=22.5
Q ss_pred ccccCccccccccchhhhhccCCCCC-CCCCCCCCCCCCCcccc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLN-IPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~Cgg~lrP 158 (192)
...|+.|+..|.......... +++ ..|| .||+.|.+
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d--~~~~f~Cp-----~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLD--MDGTFTCP-----RCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcC--CCCcEECC-----CCCCEEEE
Confidence 357999999988655432211 122 4576 99997643
No 41
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=70.45 E-value=1.3 Score=38.36 Aligned_cols=41 Identities=22% Similarity=0.614 Sum_probs=29.7
Q ss_pred eCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 110 lHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
.-|-++..-|..|.++|..+.... ..-+|| .|||.++-.|.
T Consensus 240 ~LGKY~~TAC~rC~t~y~le~A~~------~~wrCp-----kCGg~ikKGV~ 280 (403)
T COG1379 240 RLGKYHLTACSRCYTRYSLEEAKS------LRWRCP-----KCGGKIKKGVS 280 (403)
T ss_pred cccchhHHHHHHhhhccCcchhhh------hcccCc-----ccccchhhhHH
Confidence 347788889999999987655331 123676 99998887764
No 42
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=69.24 E-value=3.6 Score=31.54 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=20.2
Q ss_pred ccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 114 MYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
....+|.+|+....... ....|+|| .||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~~-------~~~l~~Cp-----~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELTH-------PERLPPCP-----KCGHT 139 (146)
T ss_pred CceEecccCCCEEEecC-------CCcCCCCC-----CCCCC
Confidence 45678999998754322 12467788 89864
No 43
>KOG4166|consensus
Probab=69.19 E-value=6.1 Score=35.82 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
+.++..|++++++|+.||+-|++.|+|+=..+-
T Consensus 282 ~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d 314 (675)
T KOG4166|consen 282 DFVMSHIEQIARLISLAKKPVLYVGGGCLNSSD 314 (675)
T ss_pred hhHHHHHHHHHHHHHhccCceEEeCcccccCCc
Confidence 456789999999999999999999999877664
No 44
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=68.84 E-value=3.2 Score=23.94 Aligned_cols=32 Identities=16% Similarity=0.518 Sum_probs=19.2
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
..|++|+..|..++.. +......-+|+ .||..
T Consensus 3 i~Cp~C~~~y~i~d~~--ip~~g~~v~C~-----~C~~~ 34 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK--IPPKGRKVRCS-----KCGHV 34 (36)
T ss_pred EECCCCCCEEeCCHHH--CCCCCcEEECC-----CCCCE
Confidence 5799999998765532 22222223465 88764
No 45
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=68.49 E-value=3.3 Score=29.81 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhCCC-----------CCCCCCCCccccc--ccCCCCc-cccccc-CCCCCHHHHH
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGI-----------PDFRGPNGVWTLE--KKGIKPK-VNISFD-DAVPTVTHMA 75 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~sGi-----------pdfr~~~g~~~~~--~~~~~p~-~~~~~~-~~~P~~~H~~ 75 (192)
.++++++.|.++++ |+++|.|.|...+- +.+-- .+.+... ....++. ....+. .-.+...-..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVAEYLAYKLLRLGKPVVLL-SDPHLQLMSAANLTPGDVVIAISFSGETKETVEA 79 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHHHHHHHHHHHcCCceEEe-cCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHH
Confidence 57899999999876 57889998866532 11100 0000000 0001111 111121 1222334455
Q ss_pred HHHHHHcCCccEEEeccCcchhhhc
Q psy13183 76 ILELVNQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 76 l~~l~~~g~~~~viTqNiD~L~~~a 100 (192)
+..+.+.|-...+||.|-+....+.
T Consensus 80 ~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 80 AEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred HHHHHHcCCeEEEEcCCCCChhHHh
Confidence 5666666666678899988776653
No 46
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=67.28 E-value=3.7 Score=40.42 Aligned_cols=39 Identities=28% Similarity=0.573 Sum_probs=28.9
Q ss_pred EeCccccc-----cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 109 ELHGNMYV-----DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 109 elHG~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
-|-||++. .+|++|+.+|-+- |....|+ +|||.+-+.|-
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~---------PL~G~C~-----kCGg~lilTV~ 1043 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRI---------PLVGKCL-----KCGNNLTLTVS 1043 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccC---------CCCCccc-----ccCCeEEEEEe
Confidence 56799875 4899999998642 3445677 99998777663
No 47
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=66.81 E-value=3.2 Score=29.27 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.5
Q ss_pred hCCcEEEEeCCccchh
Q psy13183 21 KAKHVVLHTGAGISTS 36 (192)
Q Consensus 21 ~a~~ivv~tGAGiS~~ 36 (192)
+.++|++++|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999965
No 48
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=66.59 E-value=1.1 Score=34.50 Aligned_cols=84 Identities=21% Similarity=0.449 Sum_probs=50.6
Q ss_pred CCCCC-HHHHHHHHHHH----cCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCC
Q psy13183 66 DAVPT-VTHMAILELVN----QGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNL 140 (192)
Q Consensus 66 ~~~P~-~~H~~l~~l~~----~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 140 (192)
+.-|. .+|+.+-...+ .|+.+..+-+.||+|--..-.+ ..+-.+-|+-+..+|. |++.|.+..-.+.+.. ..
T Consensus 63 ~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~-~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~-g~ 139 (156)
T COG3091 63 QVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQ-FEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRR-GE 139 (156)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccch-HHHhhccccceeEEee-cCCccchhhhcccccc-cc
Confidence 34444 35666555544 3667778888999886444221 2345566788889999 9988765332222211 11
Q ss_pred CCCCCCCCCCCCCCccc
Q psy13183 141 NIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 141 ~~~C~~~~~~~Cgg~lr 157 (192)
.-+|. +|+|.|+
T Consensus 140 ~YrC~-----~C~gkL~ 151 (156)
T COG3091 140 VYRCG-----KCGGKLV 151 (156)
T ss_pred eEEec-----cCCceEE
Confidence 34576 9998764
No 49
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=66.31 E-value=5.9 Score=36.78 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
++|++++++|.+|++.||+.|.|+.-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 6799999999999999999999998765
No 50
>PRK11032 hypothetical protein; Provisional
Probab=66.07 E-value=4.5 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=19.8
Q ss_pred ccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 114 MYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
+..++|.+|+...... .....|+|| .||+.
T Consensus 122 ~G~LvC~~Cg~~~~~~-------~p~~i~pCp-----~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLAFY-------TPEVLPLCP-----KCGHD 151 (160)
T ss_pred cceEEecCCCCEEEec-------CCCcCCCCC-----CCCCC
Confidence 3567899999875432 123467888 99863
No 51
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=65.89 E-value=3.6 Score=30.95 Aligned_cols=12 Identities=50% Similarity=1.027 Sum_probs=10.0
Q ss_pred cccCcccccccc
Q psy13183 117 DQCNKCERQFVR 128 (192)
Q Consensus 117 ~~C~~C~~~~~~ 128 (192)
.+|++|++.|..
T Consensus 2 H~Ct~Cg~~f~d 13 (131)
T PF09845_consen 2 HQCTKCGRVFED 13 (131)
T ss_pred cccCcCCCCcCC
Confidence 489999999864
No 52
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.47 E-value=3.3 Score=29.81 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.2
Q ss_pred CcEEEEeCCccchh
Q psy13183 23 KHVVLHTGAGISTS 36 (192)
Q Consensus 23 ~~ivv~tGAGiS~~ 36 (192)
++|++++|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 57999999999876
No 53
>PRK04023 DNA polymerase II large subunit; Validated
Probab=64.72 E-value=4.4 Score=40.12 Aligned_cols=39 Identities=36% Similarity=0.714 Sum_probs=29.2
Q ss_pred EeCccccc-----cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 109 ELHGNMYV-----DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 109 elHG~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
-|-||++. .+|++|+.+|-+- |....|+ +|||.+-+.|-
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~---------PL~G~C~-----kCGg~lilTVh 1068 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRP---------PLSGKCP-----KCGGNLILTVH 1068 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccC---------CCCCcCc-----cCCCeEEEEEe
Confidence 56699875 4899999998652 3445677 99998877763
No 54
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=64.14 E-value=15 Score=26.32 Aligned_cols=33 Identities=42% Similarity=0.712 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCcEEEEeCC------ccchh---CCCCCCCCC
Q psy13183 12 IKVLSEWIDKAKHVVLHTGA------GISTS---AGIPDFRGP 45 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGA------GiS~~---sGipdfr~~ 45 (192)
++.+++..- +.++||+.|| |+.++ .|=|+|.|+
T Consensus 9 vk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 9 IKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 444444332 5788888876 44433 466999987
No 55
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=62.51 E-value=4.9 Score=40.66 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=28.7
Q ss_pred EeCccccc-----cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceE
Q psy13183 109 ELHGNMYV-----DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTI 160 (192)
Q Consensus 109 elHG~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~V 160 (192)
-|-||++. .+|++|+.+|-+- |....|+ +|||.+-+.|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~---------PL~G~C~-----kCGg~iilTv 1283 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRM---------PLAGKCR-----KCGGRIILTV 1283 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccC---------CCCCccc-----ccCCeEEEEE
Confidence 56799875 4899999998642 3445677 9999877776
No 56
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=62.47 E-value=11 Score=29.34 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccccc
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK 54 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~ 54 (192)
.+.+.-++|++.++.++.++|+.|+- .||| .|+|++..+
T Consensus 105 ~is~vk~~L~~~~r~~~eV~v~iGSR----eGiP-----~GlfRfAd~ 143 (173)
T PF14419_consen 105 PISEVKDKLAEDLRYAKEVVVFIGSR----EGIP-----RGLFRFADY 143 (173)
T ss_pred cHHHHHHHHHHHHhhCcEEEEEEEcc----cCCC-----hhHHHHhhh
Confidence 34556789999999999999999986 6777 356654443
No 57
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=62.19 E-value=6 Score=28.77 Aligned_cols=30 Identities=23% Similarity=0.628 Sum_probs=20.1
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccce
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
-.|++||++|.- +.+ ....|| .||....|.
T Consensus 10 R~Cp~CG~kFYD------Lnk--~PivCP-----~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYD------LNK--DPIVCP-----KCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhcc------CCC--CCccCC-----CCCCccCcc
Confidence 479999998642 222 223577 999877777
No 58
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.95 E-value=9 Score=35.62 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|+.
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~ 233 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVI 233 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 45799999999999999999999996
No 59
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=61.91 E-value=5.4 Score=34.88 Aligned_cols=76 Identities=29% Similarity=0.328 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEE
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVV 89 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~vi 89 (192)
.++.+|.+-|+..++++++.|+| | | -.+|+|+.-...-+-..+..|...+||+...-+.+-.+ -+-
T Consensus 17 g~i~~l~~ei~~~~kVLi~YGGG-S----I----KrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~-----i~k 82 (384)
T COG1979 17 GQIAELREEIPKDAKVLIVYGGG-S----I----KKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVE-----ICK 82 (384)
T ss_pred chHHHHHhhccccCeEEEEecCc-c----c----cccchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHH-----HHH
Confidence 46889999999999999999999 3 2 24678864222222333557889999998766554433 123
Q ss_pred eccCcchhhh
Q psy13183 90 SQNIDGLHLR 99 (192)
Q Consensus 90 TqNiD~L~~~ 99 (192)
.+|||=|..-
T Consensus 83 ee~idflLAV 92 (384)
T COG1979 83 EENIDFLLAV 92 (384)
T ss_pred HcCceEEEEe
Confidence 4666655433
No 60
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=61.67 E-value=6.9 Score=22.23 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.1
Q ss_pred ccccCcccccccc
Q psy13183 116 VDQCNKCERQFVR 128 (192)
Q Consensus 116 ~~~C~~C~~~~~~ 128 (192)
.++|..||..+..
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 4789999987643
No 61
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=61.65 E-value=4.7 Score=21.40 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=8.1
Q ss_pred ccccCcccccc
Q psy13183 116 VDQCNKCERQF 126 (192)
Q Consensus 116 ~~~C~~C~~~~ 126 (192)
...|++|++..
T Consensus 2 ~~~Cp~Cg~~~ 12 (26)
T PF13248_consen 2 EMFCPNCGAEI 12 (26)
T ss_pred cCCCcccCCcC
Confidence 35799999754
No 62
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=61.08 E-value=7 Score=21.94 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=9.6
Q ss_pred cccCcccccccc
Q psy13183 117 DQCNKCERQFVR 128 (192)
Q Consensus 117 ~~C~~C~~~~~~ 128 (192)
++|..||..|..
T Consensus 2 ~~C~~CGy~y~~ 13 (33)
T cd00350 2 YVCPVCGYIYDG 13 (33)
T ss_pred EECCCCCCEECC
Confidence 689999988754
No 63
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=60.84 E-value=5 Score=27.21 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.8
Q ss_pred cEEEEeCCccchhC
Q psy13183 24 HVVLHTGAGISTSA 37 (192)
Q Consensus 24 ~ivv~tGAGiS~~s 37 (192)
+|++.+|+|+|++.
T Consensus 1 kIlvvC~~Gi~TS~ 14 (90)
T PF02302_consen 1 KILVVCGSGIGTSL 14 (90)
T ss_dssp EEEEEESSSSHHHH
T ss_pred CEEEECCChHHHHH
Confidence 58899999999774
No 64
>PRK13936 phosphoheptose isomerase; Provisional
Probab=60.77 E-value=13 Score=29.62 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.+++.++.+++.|+++++|.++ |.|-|..
T Consensus 28 ~i~~a~~~~~~~l~~a~~I~i~-G~G~S~~ 56 (197)
T PRK13936 28 PIAQAVELMVQALLNEGKILAC-GNGGSAA 56 (197)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE-eCcHhHH
Confidence 3456677778888888887666 9998854
No 65
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=60.54 E-value=5.6 Score=28.62 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=12.4
Q ss_pred CcEEEEeCCccchh
Q psy13183 23 KHVVLHTGAGISTS 36 (192)
Q Consensus 23 ~~ivv~tGAGiS~~ 36 (192)
++|++++.||+|++
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57999999999976
No 66
>PRK07591 threonine synthase; Validated
Probab=60.50 E-value=5.2 Score=35.78 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=21.6
Q ss_pred ccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccce
Q psy13183 114 MYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
+..++|..|+++|+.+. . ..|+ .||++|...
T Consensus 16 ~~~l~C~~Cg~~~~~~~---------~-~~C~-----~cg~~l~~~ 46 (421)
T PRK07591 16 AVALKCRECGAEYPLGP---------I-HVCE-----ECFGPLEVA 46 (421)
T ss_pred eeEEEeCCCCCcCCCCC---------C-ccCC-----CCCCeEEEE
Confidence 34589999999986431 1 3576 899887633
No 67
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=59.21 E-value=5.8 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.548 Sum_probs=19.0
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
.+|++|+..|..+... +.....--+|+ .|+..
T Consensus 3 i~CP~C~~~f~v~~~~--l~~~~~~vrC~-----~C~~~ 34 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDK--LPAGGRKVRCP-----KCGHV 34 (37)
T ss_pred EECCCCCceEEcCHHH--cccCCcEEECC-----CCCcE
Confidence 5799999988765432 22222223566 88754
No 68
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=58.90 E-value=30 Score=33.44 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=16.4
Q ss_pred hcCCCCCceEEeCccccccccCcccccc
Q psy13183 99 RSGLSRKYLAELHGNMYVDQCNKCERQF 126 (192)
Q Consensus 99 ~aG~~~~~v~elHG~~~~~~C~~C~~~~ 126 (192)
|-|+ ...+.+|=.=+..+|++|...+
T Consensus 429 RRGy--s~~l~C~~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 429 RRGY--APLLLCRDCGYIAECPNCDSPL 454 (730)
T ss_pred cCCc--cceeecccCCCcccCCCCCcce
Confidence 4555 2466677666777777776543
No 69
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.68 E-value=12 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
++.++.+.++|.+|+++||.|+.-
T Consensus 23 eeEve~ireyi~sA~r~vV~t~N~ 46 (156)
T COG4019 23 EEEVEKIREYIVSAKRIVVATNNQ 46 (156)
T ss_pred HHHHHHHHHHHhccceEEEecCCH
Confidence 456889999999999999998763
No 70
>PRK07524 hypothetical protein; Provisional
Probab=58.51 E-value=11 Score=34.61 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||++|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 188 PAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCChH
Confidence 35689999999999999999999985
No 71
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=58.00 E-value=13 Score=26.74 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEe--CccccccccCccccccccch
Q psy13183 67 AVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 67 ~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~el--HG~~~~~~C~~C~~~~~~~~ 130 (192)
..++..|+.|..|.+.|.+..+.+.|-- ..|++ +..-..+.|..|++....+.
T Consensus 40 is~~TVYR~L~~L~e~Gli~~~~~~~~~-----------~~Y~~~~~~~h~h~iC~~Cg~v~~~~~ 94 (120)
T PF01475_consen 40 ISLATVYRTLDLLEEAGLIRKIEFGDGE-----------SRYELSTCHHHHHFICTQCGKVIDLDD 94 (120)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEEETTSE-----------EEEEESSSSSCEEEEETTTS-EEEE-G
T ss_pred cCHHHHHHHHHHHHHCCeEEEEEcCCCc-----------ceEeecCCCcceEEEECCCCCEEEecc
Confidence 3445679999999999988776554222 23443 23445689999998765543
No 72
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=57.93 E-value=12 Score=34.56 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCCccch------------hCCCCCCCCC
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIST------------SAGIPDFRGP 45 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~------------~sGipdfr~~ 45 (192)
.+++.+.+.++.+.++|.+||+.+|++|+.+|. +.++|.|--+
T Consensus 190 sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~p 244 (557)
T COG3961 190 SDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLP 244 (557)
T ss_pred CCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEee
Confidence 356778889999999999999999999999883 4577777554
No 73
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=57.89 E-value=13 Score=34.23 Aligned_cols=26 Identities=15% Similarity=-0.080 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++||+.|++.|.|..
T Consensus 192 ~~~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 192 RAFRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHHHhCCCCEEEeChhhc
Confidence 45689999999999999999999984
No 74
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=57.39 E-value=6.1 Score=27.76 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=11.3
Q ss_pred cEEEEeCCccchh
Q psy13183 24 HVVLHTGAGISTS 36 (192)
Q Consensus 24 ~ivv~tGAGiS~~ 36 (192)
+|++++|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4889999999976
No 75
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=57.19 E-value=12 Score=34.85 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
++.+++++++|++|++.||+.|.|+.
T Consensus 195 ~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 195 DEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcchH
Confidence 45689999999999999999999985
No 76
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=56.99 E-value=6.3 Score=28.38 Aligned_cols=14 Identities=57% Similarity=0.795 Sum_probs=12.4
Q ss_pred CcEEEEeCCccchh
Q psy13183 23 KHVVLHTGAGISTS 36 (192)
Q Consensus 23 ~~ivv~tGAGiS~~ 36 (192)
++|++++|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999976
No 77
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.82 E-value=9.2 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=19.5
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccce
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
+-.|++|+++|.- +.+ ....|| .||....|.
T Consensus 9 Kr~Cp~cg~kFYD------Lnk--~p~vcP-----~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD------LNR--RPAVSP-----YTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc------cCC--CCccCC-----CcCCccCcc
Confidence 3479999988642 211 234676 898765554
No 78
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=56.18 E-value=13 Score=34.59 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.+++++++|.+|++.||++|.|+..
T Consensus 189 ~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 189 RAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 456999999999999999999999863
No 79
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=55.60 E-value=13 Score=34.50 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.+.+++++++|.+|++.||+.|.|+..+
T Consensus 193 ~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4569999999999999999999999643
No 80
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=55.19 E-value=6.5 Score=28.33 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.1
Q ss_pred cccCcccccccc
Q psy13183 117 DQCNKCERQFVR 128 (192)
Q Consensus 117 ~~C~~C~~~~~~ 128 (192)
.+|++||+.|+.
T Consensus 3 H~CtrCG~vf~~ 14 (112)
T COG3364 3 HQCTRCGEVFDD 14 (112)
T ss_pred ceeccccccccc
Confidence 589999999864
No 81
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=55.00 E-value=7.9 Score=34.43 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.6
Q ss_pred cccccCccccccc
Q psy13183 115 YVDQCNKCERQFV 127 (192)
Q Consensus 115 ~~~~C~~C~~~~~ 127 (192)
+.++|..|+++|+
T Consensus 1 ~~l~C~~Cg~~~~ 13 (398)
T TIGR03844 1 YTLRCPGCGEVLP 13 (398)
T ss_pred CEEEeCCCCCccC
Confidence 3578999999985
No 82
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=54.96 E-value=13 Score=34.51 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.+|+.|.|+-
T Consensus 204 ~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 204 IKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 35689999999999999999999994
No 83
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=54.83 E-value=13 Score=34.50 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||++|.|+.
T Consensus 187 ~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 187 VEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchh
Confidence 45799999999999999999999996
No 84
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=54.77 E-value=13 Score=26.20 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.3
Q ss_pred CCCCcccceEEECC
Q psy13183 151 PCRGTLHDTILDWE 164 (192)
Q Consensus 151 ~Cgg~lrP~Vv~fg 164 (192)
.|+|.|.|--|+.-
T Consensus 46 ~C~g~M~Pi~v~~~ 59 (92)
T PF12647_consen 46 DCGGRMEPIAVWVR 59 (92)
T ss_pred cCCCeeeEEEEEEE
Confidence 69999999888653
No 85
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=54.52 E-value=14 Score=34.34 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.+++++++|++|++.+|++|.|+..
T Consensus 184 ~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 184 TSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred HHHHHHHHHHHhCCCCEEEECcCccc
Confidence 46889999999999999999999863
No 86
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=54.47 E-value=40 Score=28.97 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=46.5
Q ss_pred HHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEEeccC
Q psy13183 14 VLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNI 93 (192)
Q Consensus 14 ~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~viTqNi 93 (192)
+..++|-++..+||.+|.| |||..+..+|+--.+..- +. ..+-..|+++.+ -..++|.+.+
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~~~GVeAVI-DK-----------DlasalLA~~i~--AD~liILTdV 235 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG-----GIPVVEEGAGLQGVEAVI-DK-----------DLASALLAEQID--ADLLIILTDV 235 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC-----CcceEecCCCcceeeEEE-cc-----------HHHHHHHHHHhc--CCEEEEEecc
Confidence 3445555678999999987 899999887722222110 10 112334555554 4567999999
Q ss_pred cchhhhcCCCC
Q psy13183 94 DGLHLRSGLSR 104 (192)
Q Consensus 94 D~L~~~aG~~~ 104 (192)
|+.+..-|-|.
T Consensus 236 d~Vy~n~gkp~ 246 (312)
T COG0549 236 DAVYVNFGKPN 246 (312)
T ss_pred chheecCCCcc
Confidence 99998888764
No 87
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=54.23 E-value=13 Score=34.27 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+-
T Consensus 200 ~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 200 PEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 45699999999999999999999985
No 88
>PRK13937 phosphoheptose isomerase; Provisional
Probab=54.18 E-value=19 Score=28.31 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
+.+++.++++++.|+++++| ++.|.|-|..
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI-~i~G~G~S~~ 51 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKI-LLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEE-EEEeCcHhHH
Confidence 45666788888888888885 7789999853
No 89
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=53.79 E-value=11 Score=32.02 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchhCC-----------CCCCCCCC--CcccccccCCCC-ccccccc-CCCCC
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPN--GVWTLEKKGIKP-KVNISFD-DAVPT 70 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG-----------ipdfr~~~--g~~~~~~~~~~p-~~~~~~~-~~~P~ 70 (192)
..+..+|++++++|.++.+-+++.|.|.|..++ ++.+--.. ..+. .....++ .....+. .-+-.
T Consensus 30 ~~~~~~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~~I~iS~sG~t~ 108 (326)
T PRK10892 30 QYINQDFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHG-DLGMVTPQDVVIAISNSGESS 108 (326)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhcc-ccccCCCCCEEEEEeCCCCCH
Confidence 345567999999999886558999999887654 22211000 0000 0000011 1111121 23444
Q ss_pred HHHHHHHHHHHcCCccEEEeccCcchhhhc
Q psy13183 71 VTHMAILELVNQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 71 ~~H~~l~~l~~~g~~~~viTqNiD~L~~~a 100 (192)
..-.++..+.+.|-..-.||.|-+.-..+.
T Consensus 109 ~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ 138 (326)
T PRK10892 109 EILALIPVLKRLHVPLICITGRPESSMARA 138 (326)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCccccc
Confidence 556677777777777788888888776554
No 90
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=53.75 E-value=23 Score=30.55 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcC
Q psy13183 4 SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQG 83 (192)
Q Consensus 4 ~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g 83 (192)
||..++..-.+..+.+-+...+||.+|.| |||.+.+.+.++..+. ...-...=..+|...+..
T Consensus 163 sp~p~~iv~~~~I~~LL~~G~iVI~~ggg-----giPvi~e~~~~~g~e~------------~id~D~lAa~lA~~l~AD 225 (310)
T TIGR00746 163 SPRPKDIVEAETIKTLVENGVIVISSGGG-----GVPVVLEGAELKGVEA------------VIDKDLASEKLAEEVNAD 225 (310)
T ss_pred CCCchhhccHHHHHHHHHCCCEEEeCCCC-----CcCEEecCCeEEeeEe------------cCCHHHHHHHHHHHhCCC
Q ss_pred CccEEEeccCcchhhhcCCCCCceEE
Q psy13183 84 KVHYVVSQNIDGLHLRSGLSRKYLAE 109 (192)
Q Consensus 84 ~~~~viTqNiD~L~~~aG~~~~~v~e 109 (192)
++ |+-+++||++..-+.|..+++.
T Consensus 226 ~L--IiLTDVdGVy~~~~~p~a~~i~ 249 (310)
T TIGR00746 226 IL--VILTDVDAVYINYGKPDEKALR 249 (310)
T ss_pred EE--EEEeCCCceeCCCCCCCCcCCc
No 91
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=53.45 E-value=16 Score=28.21 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCC-----------CCCCCCCCCcccccccCCCC-cccccccCCCCCH-HHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPNGVWTLEKKGIKP-KVNISFDDAVPTV-THMAI 76 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sG-----------ipdfr~~~g~~~~~~~~~~p-~~~~~~~~~~P~~-~H~~l 76 (192)
+.+++++++|.+|++ |++.|-|.|...+ ++.+--.+ .. ....++ ...+.+....-+. .-.++
T Consensus 21 ~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-~~---~~~~~~~D~vI~iS~sG~t~~~i~~~ 95 (179)
T cd05005 21 EELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE-TT---TPAIGPGDLLIAISGSGETSSVVNAA 95 (179)
T ss_pred HHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHHHhCCCeEEEeCC-CC---CCCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 568999999999977 5777888885432 21110000 00 000111 1222233222233 34455
Q ss_pred HHHHHcCCccEEEeccCcchhhhc
Q psy13183 77 LELVNQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 77 ~~l~~~g~~~~viTqNiD~L~~~a 100 (192)
....+.|-..-.||.|-+.-..+.
T Consensus 96 ~~ak~~g~~iI~IT~~~~s~la~~ 119 (179)
T cd05005 96 EKAKKAGAKVVLITSNPDSPLAKL 119 (179)
T ss_pred HHHHHCCCeEEEEECCCCCchHHh
Confidence 555556766778888877765554
No 92
>PRK07586 hypothetical protein; Validated
Probab=53.25 E-value=14 Score=33.51 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|+.
T Consensus 184 ~~~v~~~~~~L~~A~rPvi~~G~g~~ 209 (514)
T PRK07586 184 PAAVEAAAAALRSGEPTVLLLGGRAL 209 (514)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCccc
Confidence 35689999999999999999999986
No 93
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=53.21 E-value=14 Score=34.53 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|..
T Consensus 211 ~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 211 PRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 45799999999999999999999985
No 94
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=53.00 E-value=15 Score=34.10 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||++|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 193 KGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35689999999999999999999985
No 95
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=52.76 E-value=15 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+++++++++|.+|++ |++.|.|.|...
T Consensus 116 ~~l~~~~~~i~~a~~-I~i~G~G~s~~~ 142 (278)
T PRK11557 116 EKLHECVTMLRSARR-IILTGIGASGLV 142 (278)
T ss_pred HHHHHHHHHHhcCCe-EEEEecChhHHH
Confidence 568899999999998 577788887553
No 96
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.46 E-value=43 Score=30.18 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhh---------c--------CCCCCceEEeCccccccccCc-ccc-cc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLR---------S--------GLSRKYLAELHGNMYVDQCNK-CER-QF 126 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~---------a--------G~~~~~v~elHG~~~~~~C~~-C~~-~~ 126 (192)
-+.|+..+.+|.=|.+.|+++..++.-..-.-++ | |-+-.+|.+++|......|.. |+. .|
T Consensus 65 l~~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y 144 (436)
T COG3486 65 LVDPTSPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVY 144 (436)
T ss_pred ccCCCCchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEE
Confidence 4789999999999999998874443332222211 1 222234458999988887764 554 44
Q ss_pred ccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 127 VRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
....++..++..|..|.| |..+.-|+|+.-.|.+. + ...+.+..-+.|||+.
T Consensus 145 ~ar~lVlg~G~~P~IP~~-------f~~l~~~~vfHss~~~~-----~-~~~~~~~~~V~ViG~G 196 (436)
T COG3486 145 RARNLVLGVGTQPYIPPC-------FRSLIGERVFHSSEYLE-----R-HPELLQKRSVTVIGSG 196 (436)
T ss_pred EeeeEEEccCCCcCCChH-------HhCcCccceeehHHHHH-----h-hHHhhcCceEEEEcCC
Confidence 444444455555666654 34555567876544332 1 2233444548888863
No 97
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=52.43 E-value=16 Score=28.13 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCC--CCCccc--c-cc--cCCCC-cccccccC-CCCCHHHHHHHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG--PNGVWT--L-EK--KGIKP-KVNISFDD-AVPTVTHMAILELV 80 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~--~~g~~~--~-~~--~~~~p-~~~~~~~~-~~P~~~H~~l~~l~ 80 (192)
+++++++++|.++++ |++.|.|.|....-.-... .-|... . +. ...++ .....+.. .+....-.++....
T Consensus 18 ~~~~~~~~~l~~a~~-I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak 96 (179)
T TIGR03127 18 EELDKLADKIIKAKR-IFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAK 96 (179)
T ss_pred HHHHHHHHHHHhCCE-EEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 568899999999886 6778888775432100000 000000 0 00 00111 11122222 22233344555556
Q ss_pred HcCCccEEEeccCcchhhhc
Q psy13183 81 NQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 81 ~~g~~~~viTqNiD~L~~~a 100 (192)
+.|-..-.||.|-+.-..+.
T Consensus 97 ~~g~~ii~IT~~~~s~la~~ 116 (179)
T TIGR03127 97 EIGATVAAITTNPESTLGKL 116 (179)
T ss_pred HCCCeEEEEECCCCCchHHh
Confidence 66777788898888766554
No 98
>PRK11269 glyoxylate carboligase; Provisional
Probab=52.23 E-value=16 Score=34.01 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|+.
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (591)
T PRK11269 190 RAQIEKALEMLNAAERPLIVAGGGVI 215 (591)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 35688999999999999999999985
No 99
>PLN02470 acetolactate synthase
Probab=51.76 E-value=15 Score=34.07 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||++|.|+.
T Consensus 202 ~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 202 KSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCChh
Confidence 35689999999999999999999985
No 100
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=51.64 E-value=7.1 Score=21.92 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=7.4
Q ss_pred CCCCC-Ccccce
Q psy13183 149 FRPCR-GTLHDT 159 (192)
Q Consensus 149 ~~~Cg-g~lrP~ 159 (192)
||+|| |.|.|-
T Consensus 4 cpkcgvgvl~pv 15 (36)
T PF09151_consen 4 CPKCGVGVLEPV 15 (36)
T ss_dssp -TTTSSSBEEEE
T ss_pred CCccCceEEEEe
Confidence 44898 877774
No 101
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=51.59 E-value=16 Score=33.86 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
...+++++++|.+|++.||++|.|+.
T Consensus 200 ~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 200 PQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 35689999999999999999999975
No 102
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=51.46 E-value=17 Score=33.80 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.+++++++|++|++.||+.|.|+..
T Consensus 202 ~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 202 MKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCccc
Confidence 46899999999999999999999853
No 103
>PRK06154 hypothetical protein; Provisional
Probab=51.29 E-value=16 Score=33.80 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
...+++++++|.+|++.||+.|.|+..
T Consensus 201 ~~~i~~aa~~L~~A~rPvil~G~g~~~ 227 (565)
T PRK06154 201 PVEVVEAAALLLAAERPVIYAGQGVLY 227 (565)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 346899999999999999999999973
No 104
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=51.10 E-value=17 Score=33.68 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
...+++++++|.+|++.||+.|.|+.
T Consensus 197 ~~~i~~~~~~L~~A~rPvil~G~g~~ 222 (566)
T PRK07282 197 DMQIKKILKQLSKAKKPVILAGGGIN 222 (566)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcC
Confidence 34689999999999999999999995
No 105
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=51.10 E-value=16 Score=34.14 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 218 ~~~i~~~~~~L~~AkrPlIl~G~g~~ 243 (612)
T PRK07789 218 GKQIREAAKLIAAARRPVLYVGGGVI 243 (612)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35689999999999999999999995
No 106
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=50.81 E-value=16 Score=33.87 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.+++++++|++|++.||+.|.|+..
T Consensus 207 ~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 207 PEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 457999999999999999999999963
No 107
>PLN02573 pyruvate decarboxylase
Probab=50.59 E-value=18 Score=33.65 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
....+++++++|++|++.||+.|.|+..
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~~ 237 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLRV 237 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 3567999999999999999999999853
No 108
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=50.42 E-value=17 Score=33.87 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 199 ~~~l~~a~~~L~~A~rPvil~G~g~~ 224 (595)
T PRK09107 199 AEAITEAVELLANAKRPVIYSGGGVI 224 (595)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCccc
Confidence 34699999999999999999999985
No 109
>PRK08617 acetolactate synthase; Reviewed
Probab=50.17 E-value=17 Score=33.39 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.+|+.|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 188 PEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 34688999999999999999999974
No 110
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=50.16 E-value=8.9 Score=26.86 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=12.8
Q ss_pred CcEEEEeCCccchhC
Q psy13183 23 KHVVLHTGAGISTSA 37 (192)
Q Consensus 23 ~~ivv~tGAGiS~~s 37 (192)
++|++.+|+|++++.
T Consensus 3 ~kILvvCgsG~~TS~ 17 (94)
T PRK10310 3 RKIIVACGGAVATST 17 (94)
T ss_pred CeEEEECCCchhHHH
Confidence 369999999999875
No 111
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=50.16 E-value=16 Score=30.25 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+++++++|.+|++ |++.|.|.|...
T Consensus 116 ~~i~~~~~~i~~a~~-I~i~G~G~S~~~ 142 (284)
T PRK11302 116 SAINRAVDLLTQAKK-ISFFGLGASAAV 142 (284)
T ss_pred HHHHHHHHHHHcCCe-EEEEEcchHHHH
Confidence 568899999999987 688899988654
No 112
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=50.08 E-value=9.8 Score=30.13 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=19.1
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP 158 (192)
..+|..|.+.|+. ....|| .||+.++=
T Consensus 139 ~~rC~GC~~~f~~-----------~~~~Cp-----~CG~~~~~ 165 (177)
T COG1439 139 RLRCHGCKRIFPE-----------PKDFCP-----ICGSPLKR 165 (177)
T ss_pred eEEEecCceecCC-----------CCCcCC-----CCCCceEE
Confidence 3589999998861 133577 99998643
No 113
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=49.93 E-value=8.7 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.693 Sum_probs=17.4
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
..|..|++++.... ....-+|+ .||..
T Consensus 7 Y~C~~Cg~~~~~~~-------~~~~irCp-----~Cg~r 33 (49)
T COG1996 7 YKCARCGREVELDQ-------ETRGIRCP-----YCGSR 33 (49)
T ss_pred EEhhhcCCeeehhh-------ccCceeCC-----CCCcE
Confidence 47999999883221 12344677 99964
No 114
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.66 E-value=17 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.+++++++|.+|++.||++|.|+..
T Consensus 190 ~~~i~~~~~~L~~A~rPviv~G~g~~~ 216 (563)
T PRK08527 190 SRQIKKAAEAIKEAKKPLFYLGGGAIL 216 (563)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 356899999999999999999999964
No 115
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=49.46 E-value=18 Score=33.03 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|..
T Consensus 193 ~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 193 PAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 45689999999999999999999985
No 116
>PRK07064 hypothetical protein; Provisional
Probab=49.11 E-value=18 Score=33.13 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchh---------CCCCCCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTS---------AGIPDFR 43 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~---------sGipdfr 43 (192)
.+.+++++++|.+|++.||++|.|+..+ .|+|.+-
T Consensus 190 ~~~i~~~~~~l~~AkrPvi~~G~g~~~a~~~l~~lae~~~pv~~ 233 (544)
T PRK07064 190 AAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVDLGFGVVT 233 (544)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCChHhHHHHHHHHHHcCCCEEE
Confidence 3568899999999999999999998421 5777554
No 117
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=49.03 E-value=19 Score=33.21 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 163 WEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 163 fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
|.|..|...=..+.+.+++|||+|++|++
T Consensus 247 ~p~~hp~~~g~~~~~~~~~aDlvl~lG~~ 275 (554)
T TIGR03254 247 LPDTHPQSAAAARSFALAEADVVMLVGAR 275 (554)
T ss_pred CCCCCchhhhHHHHHHHhcCCEEEEECCC
Confidence 45555543222344578899999999975
No 118
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=48.94 E-value=22 Score=32.76 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+.+++++++|++|++.|++.|.|+.
T Consensus 187 ~~~~v~~~~~~l~~AkrPvi~~G~g~~ 213 (535)
T TIGR03394 187 LDACADEVLARMRSATSPVMMVCVEVR 213 (535)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhc
Confidence 456789999999999999999999986
No 119
>PRK05858 hypothetical protein; Provisional
Probab=48.87 E-value=18 Score=33.28 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 163 WEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 163 fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
|.|..|...-..+.+.+++||++|++|++
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~ 272 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVP 272 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCC
Confidence 55666654434456778899999999974
No 120
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=48.53 E-value=18 Score=32.31 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch-----------hCCCCCCCCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST-----------SAGIPDFRGP 45 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~-----------~sGipdfr~~ 45 (192)
.+.+++++++|++|++.+|+.|.|... ..|+|.+-+.
T Consensus 198 ~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 198 PESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred hhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 346899999999999999999999853 2477877544
No 121
>PRK08322 acetolactate synthase; Reviewed
Probab=48.39 E-value=20 Score=32.82 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||++|.|+.
T Consensus 183 ~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 183 PKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 35688999999999999999999985
No 122
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=48.22 E-value=20 Score=32.90 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.+++++++|++|++.||+.|.|+..
T Consensus 183 ~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 183 DAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 46889999999999999999999853
No 123
>PRK12474 hypothetical protein; Provisional
Probab=48.18 E-value=20 Score=32.73 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++-||+.|.|+.
T Consensus 188 ~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 188 AETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccc
Confidence 35689999999999999999999985
No 124
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=48.05 E-value=27 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhC---CcEEEEeCCccchhCC
Q psy13183 9 DKKIKVLSEWIDKA---KHVVLHTGAGISTSAG 38 (192)
Q Consensus 9 ~~~l~~l~~~i~~a---~~ivv~tGAGiS~~sG 38 (192)
.+++++++++|.++ .+-|++.|.|-|...+
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A 48 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADA 48 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 34556666666552 3447889999887753
No 125
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=48.03 E-value=20 Score=33.06 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++-||+.|.|+.
T Consensus 193 ~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 193 PDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 45789999999999999999999986
No 126
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=47.71 E-value=20 Score=33.38 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
...+++++++|.+|++.+|++|.|+.
T Consensus 187 ~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 187 EQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35689999999999999999999985
No 127
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=47.43 E-value=21 Score=32.91 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+++++++|.+|++.||++|.|.-
T Consensus 189 ~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 189 LQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4589999999999999999999885
No 128
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=47.37 E-value=22 Score=33.04 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
...+++++++|.+|++.||+.|.|.-
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 190 PLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 45689999999999999999999984
No 129
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=47.14 E-value=21 Score=32.94 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 194 ~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 194 RLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 34688999999999999999999985
No 130
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=47.05 E-value=20 Score=33.30 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|+.
T Consensus 188 ~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 188 PAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchH
Confidence 35689999999999999999999984
No 131
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=46.86 E-value=21 Score=32.99 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.+++++++|.+|++.||+.|.|...
T Consensus 195 ~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 195 QQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccc
Confidence 46999999999999999999999863
No 132
>PRK15482 transcriptional regulator MurR; Provisional
Probab=46.79 E-value=20 Score=29.93 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+++++++|.+|++ |++.|.|.|...
T Consensus 123 ~~l~~~~~~i~~A~~-I~i~G~G~S~~~ 149 (285)
T PRK15482 123 ARLQKIIEVISKAPF-IQITGLGGSALV 149 (285)
T ss_pred HHHHHHHHHHHhCCe-eEEEEeChhHHH
Confidence 468899999999998 578888888553
No 133
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=46.69 E-value=40 Score=25.75 Aligned_cols=33 Identities=39% Similarity=0.718 Sum_probs=20.9
Q ss_pred HHHHHHHHh--CCcEEEEeCC------ccchh---CCCCCCCCC
Q psy13183 13 KVLSEWIDK--AKHVVLHTGA------GISTS---AGIPDFRGP 45 (192)
Q Consensus 13 ~~l~~~i~~--a~~ivv~tGA------GiS~~---sGipdfr~~ 45 (192)
++++++..+ +.++||+.|| |+.++ .|=|+|.++
T Consensus 56 ~Rvk~~aEk~g~eNvvVllGaaeaEaaglaAETVt~GDPTfAGP 99 (154)
T PRK13265 56 KRVKDLAEKFGAENVVVILGAAEAEAAGLAAETVTNGDPTFAGP 99 (154)
T ss_pred HHHHHHHHhcCCccEEEEecccchhhccceeeeeccCCCccccc
Confidence 344444443 5788888876 44433 466999987
No 134
>PRK09411 carbamate kinase; Reviewed
Probab=46.53 E-value=46 Score=28.60 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEEec
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQ 91 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~viTq 91 (192)
.+.+..+++ +..+||.+|.| |||...+.+|... ...-...=..||...+ -...|+-+
T Consensus 166 ~~~I~~Ll~-~G~IVI~~gGG-----GIPV~~~~~G~e~---------------vIDkD~~Aa~LA~~L~--Ad~LIiLT 222 (297)
T PRK09411 166 SEAIELLLK-EGHVVICSGGG-----GVPVTEDGAGSEA---------------VIDKDLAAALLAEQIN--ADGLVILT 222 (297)
T ss_pred HHHHHHHHH-CCCEEEecCCC-----CCCeEEcCCCeEE---------------ecCHHHHHHHHHHHhC--CCEEEEEe
Confidence 344555555 58888888776 6676654433211 0011112233444443 34679999
Q ss_pred cCcchhhhcCCCC
Q psy13183 92 NIDGLHLRSGLSR 104 (192)
Q Consensus 92 NiD~L~~~aG~~~ 104 (192)
|+||++..-|-|.
T Consensus 223 DVdGV~~n~~~p~ 235 (297)
T PRK09411 223 DADAVYENWGTPQ 235 (297)
T ss_pred CchhhccCCCCCC
Confidence 9999998766443
No 135
>PRK07586 hypothetical protein; Validated
Probab=46.42 E-value=20 Score=32.57 Aligned_cols=19 Identities=0% Similarity=-0.139 Sum_probs=15.6
Q ss_pred HHHHHHcccCCEEEEEecC
Q psy13183 173 NMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 173 ~~a~~~~~~~DlllviGTS 191 (192)
..+.+.+++|||+|+||++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~ 272 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAK 272 (514)
T ss_pred HHHHHHHhcCCEEEEECCC
Confidence 4456678899999999985
No 136
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=46.41 E-value=21 Score=32.91 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+++++++|++|++.||++|.|..
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 4688999999999999999999974
No 137
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=46.19 E-value=22 Score=32.93 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+++++++|.+|++.||+.|.|+.
T Consensus 203 ~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 203 LQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4589999999999999999999974
No 138
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=46.14 E-value=21 Score=32.79 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 183 ~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 183 AAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 34688999999999999999999985
No 139
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=45.93 E-value=22 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
.+.++.+.+.|.+|++|||-|..+-
T Consensus 22 ~EEv~~Ir~~I~nakkIvV~t~N~k 46 (154)
T PF11576_consen 22 EEEVEAIREYILNAKKIVVATNNEK 46 (154)
T ss_dssp HHHHHHHHHHHHH-S-EEE----HH
T ss_pred HHHHHHHHHHHhcCceEEEecCCch
Confidence 3567889999999999999988764
No 140
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=45.87 E-value=22 Score=32.87 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|.+|++.||+.|.|+.
T Consensus 199 ~~i~~~~~~L~~AkrPvIl~G~g~~ 223 (564)
T PRK08155 199 ESIRDAAAMINAAKRPVLYLGGGVI 223 (564)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4689999999999999999999985
No 141
>PF14353 CpXC: CpXC protein
Probab=45.70 E-value=9.9 Score=27.96 Aligned_cols=19 Identities=21% Similarity=0.663 Sum_probs=16.0
Q ss_pred CccccccccCccccccccc
Q psy13183 111 HGNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 111 HG~~~~~~C~~C~~~~~~~ 129 (192)
-|+++...|+.||+.+..+
T Consensus 33 ~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCcCEEECCCCCCceecC
Confidence 6999999999999876543
No 142
>PRK06450 threonine synthase; Validated
Probab=45.55 E-value=12 Score=32.40 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.5
Q ss_pred cccCccccccc
Q psy13183 117 DQCNKCERQFV 127 (192)
Q Consensus 117 ~~C~~C~~~~~ 127 (192)
++|..|+++|.
T Consensus 4 ~~C~~Cg~~~~ 14 (338)
T PRK06450 4 EVCMKCGKERE 14 (338)
T ss_pred eEECCcCCcCC
Confidence 67888888774
No 143
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.43 E-value=22 Score=32.91 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 193 SGQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35689999999999999999999985
No 144
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.10 E-value=31 Score=24.44 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCcccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVR 128 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~ 128 (192)
...++..|+.|..|++.|.+..+-..|-- ..|++. ..-..+.|..||+.+..
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~~-----------~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDGK-----------ARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCCc-----------eEEEeCCCCCCCceEeCCCCCEEEe
Confidence 45677789999999999998776554411 123321 12245899999987654
No 145
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=45.09 E-value=28 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
..+.++.|+++++.++..+|+.|+|+..+
T Consensus 154 a~~g~~~L~~lv~~a~~~~Im~GgGV~~~ 182 (248)
T PRK11572 154 AEQGLSLIMELIAASDGPIIMAGAGVRLS 182 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 45678888999988777679999999854
No 146
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=44.91 E-value=32 Score=27.54 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
+++..+.+++.++++++| ++.|.|-|+.
T Consensus 27 i~~a~~~l~~~l~~~~rI-~~~G~GgSa~ 54 (196)
T PRK10886 27 ISRAAMTLVQSLLNGNKI-LCCGNGTSAA 54 (196)
T ss_pred HHHHHHHHHHHHHcCCEE-EEEECcHHHH
Confidence 333444445555555666 5559998855
No 147
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=44.87 E-value=23 Score=32.58 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|..
T Consensus 191 ~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 191 AADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 35689999999999999999999984
No 148
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=44.67 E-value=15 Score=37.78 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=27.6
Q ss_pred EeCccccc-----cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 109 ELHGNMYV-----DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 109 elHG~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
-|-||++. .+| +|+.+|-+. |....|+ +|||.+-+.|-
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~---------PL~G~C~-----kCGg~~ilTV~ 1572 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRV---------PLKGKCP-----KCGSKLILTVS 1572 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccC---------CCCCcCc-----ccCCeEEEEEe
Confidence 56799875 489 999998642 3445677 99998777663
No 149
>PRK05858 hypothetical protein; Provisional
Probab=44.28 E-value=26 Score=32.19 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.+|+.|.|+.
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 190 PDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 35689999999999999999999985
No 150
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.13 E-value=24 Score=32.56 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~i~~~~~~l~~A~rPvi~~G~g~~ 218 (574)
T PRK06882 193 KGQIKKALKALLVAKKPVLFVGGGVI 218 (574)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 34688999999999999999999985
No 151
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=44.04 E-value=19 Score=22.44 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=11.1
Q ss_pred ccccCccccccccc
Q psy13183 116 VDQCNKCERQFVRK 129 (192)
Q Consensus 116 ~~~C~~C~~~~~~~ 129 (192)
.++|..|+..|+.+
T Consensus 1 ~y~C~~CgyiYd~~ 14 (50)
T cd00730 1 KYECRICGYIYDPA 14 (50)
T ss_pred CcCCCCCCeEECCC
Confidence 36899999988754
No 152
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.89 E-value=30 Score=29.50 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
.+.+.++.+.+.|+++++ |++.|+|-|..-|
T Consensus 47 ~I~~av~~~~~~l~~ggr-I~~~GaGtSg~la 77 (299)
T PRK05441 47 QIAAAVDAAAAALRQGGR-LIYIGAGTSGRLG 77 (299)
T ss_pred HHHHHHHHHHHHHHCCCE-EEEEcCcHHHHHH
Confidence 445567778888887766 6899999987544
No 153
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=43.67 E-value=19 Score=22.06 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.5
Q ss_pred ccccCccccccccch
Q psy13183 116 VDQCNKCERQFVRKS 130 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~ 130 (192)
+.+|..|+..|+.+.
T Consensus 1 ky~C~~CgyvYd~~~ 15 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEK 15 (47)
T ss_dssp EEEETTTSBEEETTT
T ss_pred CcCCCCCCEEEcCCc
Confidence 368999999887543
No 154
>PRK08611 pyruvate oxidase; Provisional
Probab=43.55 E-value=26 Score=32.56 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|++|++.||+.|.|+.
T Consensus 191 ~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 191 KDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred HHHHHHHHHHHcCCCcEEEECcCcc
Confidence 4688999999999999999999985
No 155
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=42.74 E-value=12 Score=19.36 Aligned_cols=8 Identities=25% Similarity=1.007 Sum_probs=4.1
Q ss_pred cCcccccc
Q psy13183 119 CNKCERQF 126 (192)
Q Consensus 119 C~~C~~~~ 126 (192)
|++|+++.
T Consensus 2 Cp~CG~~~ 9 (23)
T PF13240_consen 2 CPNCGAEI 9 (23)
T ss_pred CcccCCCC
Confidence 55555443
No 156
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=42.72 E-value=32 Score=28.63 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCC-------CCCCCCCCCcc--------c-----ccccCCCCcc------
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG-------IPDFRGPNGVW--------T-----LEKKGIKPKV------ 60 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG-------ipdfr~~~g~~--------~-----~~~~~~~p~~------ 60 (192)
.+.+.++.+++.|++.++ |++.|+|-|.--| .|+|-.+...+ . .+....+++.
T Consensus 34 ~I~~av~~~~~~l~~ggr-l~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~ 112 (257)
T cd05007 34 QIARAVDAAAERLRAGGR-LIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQ 112 (257)
T ss_pred HHHHHHHHHHHHHHcCCE-EEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHH
Confidence 455566777777877655 6899999985433 46665432111 0 0011111110
Q ss_pred ---------ccccc-CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhc
Q psy13183 61 ---------NISFD-DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 61 ---------~~~~~-~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~a 100 (192)
...+. .-+-...-.++....+.|-....||.|-+.-..+.
T Consensus 113 a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~ 162 (257)
T cd05007 113 AINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQL 162 (257)
T ss_pred HcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence 01111 12223345566666667777778888887766553
No 157
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=42.03 E-value=97 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHH------cCCccEEEeccCcchhhhcCCCCCceEEeC
Q psy13183 66 DAVPTVTHMAILELVN------QGKVHYVVSQNIDGLHLRSGLSRKYLAELH 111 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~------~g~~~~viTqNiD~L~~~aG~~~~~v~elH 111 (192)
..++-...+...+|.+ .++...+||.|-+.|...|+....+++.+.
T Consensus 86 T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~ 137 (158)
T cd05015 86 TLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIP 137 (158)
T ss_pred CHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCC
Confidence 3445455554444332 355567899988888776764333444443
No 158
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.01 E-value=51 Score=24.77 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..|-- ..|++. +.-..+.|..|++....+
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~-----------~~y~~~~~~~H~H~iC~~Cg~i~~i~ 103 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGK-----------SVFELTQQHHHDHLICLDCGKVIEFS 103 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCc-----------EEEEeCCCCCCCceEECCCCCEEEeC
Confidence 45667789999999999988766554411 123321 112358899999876543
No 159
>COG1773 Rubredoxin [Energy production and conversion]
Probab=41.88 E-value=20 Score=22.92 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.7
Q ss_pred cccccCccccccccch
Q psy13183 115 YVDQCNKCERQFVRKS 130 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~ 130 (192)
.+++|..|+-.|..+.
T Consensus 2 ~~~~C~~CG~vYd~e~ 17 (55)
T COG1773 2 KRWRCSVCGYVYDPEK 17 (55)
T ss_pred CceEecCCceEecccc
Confidence 4789999999987543
No 160
>PRK05580 primosome assembly protein PriA; Validated
Probab=41.83 E-value=50 Score=31.52 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=12.3
Q ss_pred HHHHHHHHcccCCEEEEEecC
Q psy13183 171 DINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGTS 191 (192)
..++..+.+.+-+.=|+|||.
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~ 488 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQ 488 (679)
T ss_pred hHHHHHHHHhcCCCCEEEECh
Confidence 355555666655555567774
No 161
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=41.55 E-value=17 Score=26.52 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=13.9
Q ss_pred EEeCccccccccCcccccccc
Q psy13183 108 AELHGNMYVDQCNKCERQFVR 128 (192)
Q Consensus 108 ~elHG~~~~~~C~~C~~~~~~ 128 (192)
.++.=--...+|..|+..+..
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~~ 82 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVEI 82 (113)
T ss_pred EEEEeeCcEEEcccCCCEEec
Confidence 344444556789999977654
No 162
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=41.53 E-value=16 Score=24.90 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.0
Q ss_pred CcEEEEeCCccchhC
Q psy13183 23 KHVVLHTGAGISTSA 37 (192)
Q Consensus 23 ~~ivv~tGAGiS~~s 37 (192)
+++++.+|+|++++.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 468899999998753
No 163
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=41.24 E-value=8.4 Score=22.63 Aligned_cols=8 Identities=25% Similarity=1.124 Sum_probs=5.9
Q ss_pred ccCccccc
Q psy13183 118 QCNKCERQ 125 (192)
Q Consensus 118 ~C~~C~~~ 125 (192)
+|+.|+..
T Consensus 1 ~CP~C~~~ 8 (41)
T PF13453_consen 1 KCPRCGTE 8 (41)
T ss_pred CcCCCCcc
Confidence 58888764
No 164
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=40.98 E-value=27 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|++|++.||+.|.|.+
T Consensus 189 ~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 189 EELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred HHHHHHHHHHHcCCCCEEEECcChH
Confidence 4689999999999999999999985
No 165
>PRK08266 hypothetical protein; Provisional
Probab=40.84 E-value=29 Score=31.81 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|.+|++.||+.|.|.+
T Consensus 193 ~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 193 DAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred HHHHHHHHHHHhCCCCEEEECCChh
Confidence 4688899999999999999999964
No 166
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=40.15 E-value=26 Score=26.31 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=15.2
Q ss_pred HHHHHHHcccCCEEEEEecCC
Q psy13183 172 INMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 172 ~~~a~~~~~~~DlllviGTSg 192 (192)
.+...++.+.+|++|+.|.+|
T Consensus 57 ~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 57 REILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHhCCCEEEECCCCC
Confidence 333445567899999999775
No 167
>PRK12352 putative carbamate kinase; Reviewed
Probab=39.81 E-value=66 Score=27.80 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEEeccCcch
Q psy13183 17 EWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGL 96 (192)
Q Consensus 17 ~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L 96 (192)
+.+-++..|||.+|.| |||-.++..|-+....+.- .-..+=..||...+. ...|+-+++||+
T Consensus 180 ~~ll~~g~iVi~~ggg-----giPv~~~~~g~~~n~~~nI-----------naD~aAa~iA~aL~A--dkLI~LTDV~GV 241 (316)
T PRK12352 180 KALIQQGFVVIGAGGG-----GIPVVRTDAGDYQSVDAVI-----------DKDLSTALLAREIHA--DILVITTGVEKV 241 (316)
T ss_pred HHHHHCCCEEEecCCC-----CCCEEeCCCCCccCceeee-----------cHHHHHHHHHHHhCC--CEEEEEeCchhh
Confidence 3334468898888776 7887776654331111101 111122334554443 356888899999
Q ss_pred hhhcCC
Q psy13183 97 HLRSGL 102 (192)
Q Consensus 97 ~~~aG~ 102 (192)
...-+.
T Consensus 242 ~~d~~~ 247 (316)
T PRK12352 242 CIHFGK 247 (316)
T ss_pred ccCCCC
Confidence 865443
No 168
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=39.76 E-value=14 Score=26.86 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 107 LAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 107 v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
.+++.=--...+|..|++.|..+... ..|| .||+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~~---------~~CP-----~Cgs~ 95 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEFD---------FSCP-----RCGSP 95 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHCC---------HH-S-----SSSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCCC---------CCCc-----CCcCC
Confidence 44454455678999999998754321 2376 89875
No 169
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=39.63 E-value=19 Score=26.32 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=11.6
Q ss_pred cccccccCcccccccc
Q psy13183 113 NMYVDQCNKCERQFVR 128 (192)
Q Consensus 113 ~~~~~~C~~C~~~~~~ 128 (192)
--...+|..|++.+..
T Consensus 67 ~p~~~~C~~Cg~~~~~ 82 (115)
T TIGR00100 67 EPVECECEDCSEEVSP 82 (115)
T ss_pred eCcEEEcccCCCEEec
Confidence 3445789999987754
No 170
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=39.43 E-value=32 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 163 WEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 163 fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
|.|..|...=..+...+++||++|+||++
T Consensus 254 ~~e~hpl~~G~~~~~~l~~aDlvl~lG~~ 282 (569)
T PRK09259 254 LPDTHPQSAAAARSLALANADVVLLVGAR 282 (569)
T ss_pred CCCCChhhhhHHHHHHHhcCCEEEEeCCC
Confidence 55655543212234568899999999975
No 171
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.24 E-value=44 Score=30.70 Aligned_cols=20 Identities=5% Similarity=-0.150 Sum_probs=12.1
Q ss_pred HHHHHHHcccCCEEEEEecC
Q psy13183 172 INMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 172 ~~~a~~~~~~~DlllviGTS 191 (192)
++...+.+.+-+.=|+|||.
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~ 320 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQ 320 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCc
Confidence 45555666665555667775
No 172
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=38.58 E-value=24 Score=32.90 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=15.1
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++|||+|+|||+
T Consensus 265 ~a~~~~~~aDlvl~lG~~ 282 (597)
T PRK08273 265 PSYELMRECDTLLMVGSS 282 (597)
T ss_pred HHHHHHHhCCEEEEeCCC
Confidence 356678899999999986
No 173
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=38.54 E-value=21 Score=21.58 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=17.1
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
..|..|+.++..+. ...-+|+ .||..+
T Consensus 3 Y~C~~Cg~~~~~~~--------~~~irC~-----~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKS--------KDVVRCR-----ECGYRI 29 (44)
T ss_pred EECCCCCCEeecCC--------CCceECC-----CCCceE
Confidence 46999998765431 1234676 899643
No 174
>PRK02947 hypothetical protein; Provisional
Probab=38.11 E-value=46 Score=27.39 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+++..+.+++.|.++++|. +.|.|-|...
T Consensus 26 i~~aa~lla~~i~~a~~I~-i~G~G~S~~v 54 (246)
T PRK02947 26 IEKAADLIADSIRNGGLIY-VFGTGHSHIL 54 (246)
T ss_pred HHHHHHHHHHHHHCCCEEE-EEcCcHHHHH
Confidence 3344444555555556654 6688877553
No 175
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=37.97 E-value=19 Score=26.39 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=14.5
Q ss_pred eEEeCccccccccCcccccccc
Q psy13183 107 LAELHGNMYVDQCNKCERQFVR 128 (192)
Q Consensus 107 v~elHG~~~~~~C~~C~~~~~~ 128 (192)
-+++.=--...+|..|+..+..
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~~~ 83 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVFKP 83 (117)
T ss_pred EEEEEecCCEEEhhhCCCcccc
Confidence 3444444556789999977654
No 176
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=37.46 E-value=23 Score=27.25 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCC---cEEEEeCCccchh
Q psy13183 12 IKVLSEWIDKAK---HVVLHTGAGISTS 36 (192)
Q Consensus 12 l~~l~~~i~~a~---~ivv~tGAGiS~~ 36 (192)
.+++.+++++.+ .-||+++||+|+.
T Consensus 41 p~~l~~~~~~~~~~~~~viIa~AG~~a~ 68 (150)
T PF00731_consen 41 PERLLEFVKEYEARGADVIIAVAGMSAA 68 (150)
T ss_dssp HHHHHHHHHHTTTTTESEEEEEEESS--
T ss_pred HHHHHHHHHHhccCCCEEEEEECCCccc
Confidence 355666666643 3499999999744
No 177
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=37.37 E-value=18 Score=32.03 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=23.4
Q ss_pred CccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 111 HGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 111 HG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
-|-++.-.|.+|+..+....... .. ..|| ||+.++-.|.
T Consensus 235 ~GKYh~~~c~~C~~~~~~~~~~~------~~-----~~Cp-CG~~i~~GV~ 273 (374)
T TIGR00375 235 LGKYHQTACEACGEPAVSEDAET------AC-----ANCP-CGGRIKKGVS 273 (374)
T ss_pred CCccchhhhcccCCcCCchhhhh------cC-----CCCC-CCCcceechH
Confidence 36677888999987765332111 11 2356 8887665554
No 178
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=37.29 E-value=58 Score=22.50 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
...++++.+++++++.++++-=.|+++..
T Consensus 7 ~~~v~~~~~~l~~~~~v~v~~~~~l~~~~ 35 (100)
T PF00466_consen 7 EEIVEELKELLKKSKYVIVVDYNGLSANQ 35 (100)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECTTSCHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCHHH
Confidence 45689999999999999999999998764
No 179
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=37.15 E-value=35 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=18.8
Q ss_pred ceEE-ECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 158 DTIL-DWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 158 P~Vv-~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
++|+ .|. .|+.....+...+ +..+-+|+||+|
T Consensus 68 ~DVvIDfT--~p~~~~~~~~~~~-~~g~~~ViGTTG 100 (124)
T PF01113_consen 68 ADVVIDFT--NPDAVYDNLEYAL-KHGVPLVIGTTG 100 (124)
T ss_dssp -SEEEEES---HHHHHHHHHHHH-HHT-EEEEE-SS
T ss_pred CCEEEEcC--ChHHhHHHHHHHH-hCCCCEEEECCC
Confidence 4554 565 6776666554444 459999999998
No 180
>KOG2593|consensus
Probab=37.01 E-value=15 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.529 Sum_probs=22.3
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
..|+.|.++|..-.....+.....-.+|. .|+|.|.
T Consensus 129 Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~-----~C~gelv 164 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQLLDNETGEFHCE-----NCGGELV 164 (436)
T ss_pred ccCCccccchhhhHHHHhhcccCceEEEe-----cCCCchh
Confidence 57999999987544333222212234676 9998654
No 181
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=36.92 E-value=23 Score=30.22 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.6
Q ss_pred cEEEEeCCccchhCCCCCC
Q psy13183 24 HVVLHTGAGISTSAGIPDF 42 (192)
Q Consensus 24 ~ivv~tGAGiS~~sGipdf 42 (192)
..+.+||+|+|++-|+||-
T Consensus 37 ~ai~~ss~~va~slG~pD~ 55 (290)
T TIGR02321 37 GGIWGSGFELSASYAVPDA 55 (290)
T ss_pred CEEEECHHHHHHHCCCCCc
Confidence 4788999999999999984
No 182
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.92 E-value=22 Score=25.28 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=10.7
Q ss_pred ccCCEEEEEecC
Q psy13183 180 SIADLSIIESKR 191 (192)
Q Consensus 180 ~~~DlllviGTS 191 (192)
.++||+||.|+|
T Consensus 39 ~dAeLviV~G~s 50 (103)
T COG3925 39 NDAELVIVFGSS 50 (103)
T ss_pred CcccEEEEeccc
Confidence 579999999987
No 183
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.88 E-value=24 Score=18.81 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=7.2
Q ss_pred ccCccccccc
Q psy13183 118 QCNKCERQFV 127 (192)
Q Consensus 118 ~C~~C~~~~~ 127 (192)
.|+.|+++.+
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 5888887764
No 184
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=36.79 E-value=30 Score=20.56 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=14.2
Q ss_pred HHHHHHHhCCcEEEEeCCccchh
Q psy13183 14 VLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 14 ~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
+.++.+..|....|-.|+|++..
T Consensus 2 e~a~Rl~~AgF~~i~~g~g~~~~ 24 (41)
T PF11590_consen 2 ETAERLRSAGFATIGSGAGLPSS 24 (41)
T ss_dssp HHHHHHHHTT-EEECTTS-----
T ss_pred hHHHHHHHHhHHHhccCccccch
Confidence 45777888999999999998754
No 185
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=36.76 E-value=27 Score=32.15 Aligned_cols=18 Identities=6% Similarity=-0.289 Sum_probs=14.7
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 261 ~~~~~l~~aDliL~iG~~ 278 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVI 278 (535)
T ss_pred HHHHHHHhCCEEEEECCc
Confidence 355677899999999986
No 186
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=36.30 E-value=39 Score=31.16 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc------------hhCCCCCCCCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS------------TSAGIPDFRGP 45 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS------------~~sGipdfr~~ 45 (192)
+..|+.++++||+|++-+|+.|.|+- -..|||--...
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQ 264 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQ 264 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEecc
Confidence 45688999999999999999999863 33588865543
No 187
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.26 E-value=27 Score=32.36 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.0
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+|||+
T Consensus 265 ~~~~~l~~aDlvl~vG~~ 282 (574)
T PRK07979 265 EANMTMHNADVIFAVGVR 282 (574)
T ss_pred HHHHHHHhCCEEEEeCCC
Confidence 355678899999999986
No 188
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=36.18 E-value=15 Score=20.99 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=9.1
Q ss_pred CCCCCCcccceE
Q psy13183 149 FRPCRGTLHDTI 160 (192)
Q Consensus 149 ~~~Cgg~lrP~V 160 (192)
||.||++|.|.-
T Consensus 4 Cp~C~nlL~p~~ 15 (35)
T PF02150_consen 4 CPECGNLLYPKE 15 (35)
T ss_dssp ETTTTSBEEEEE
T ss_pred CCCCCccceEcC
Confidence 459999987753
No 189
>PRK07524 hypothetical protein; Provisional
Probab=36.17 E-value=28 Score=31.90 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=15.6
Q ss_pred HHHHHHcccCCEEEEEecC
Q psy13183 173 NMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 173 ~~a~~~~~~~DlllviGTS 191 (192)
..+.+.+++|||+|++|++
T Consensus 255 ~~~~~~~~~aDlvl~vG~~ 273 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTE 273 (535)
T ss_pred HHHHHHHHhCCEEEEeCCC
Confidence 3466778899999999975
No 190
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=36.16 E-value=30 Score=29.58 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=14.6
Q ss_pred HHHHHHHcccCCEEEEEec
Q psy13183 172 INMGDYNSSIADLSIIESK 190 (192)
Q Consensus 172 ~~~a~~~~~~~DlllviGT 190 (192)
-++..+.+.+||++||||+
T Consensus 203 Q~Avk~la~~~Dl~iVVG~ 221 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGS 221 (294)
T ss_pred HHHHHHHhhcCCEEEEECC
Confidence 3344566788999999995
No 191
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=36.03 E-value=59 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=18.1
Q ss_pred eEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 159 TILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 159 ~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
..+..|++.++.....+.+. ++|+ ||||+.|
T Consensus 93 ~~~~~g~~~~~~i~~~a~~~--~adl-iV~G~~g 123 (154)
T COG0589 93 TEVVEGSPSAEEILELAEEE--DADL-IVVGSRG 123 (154)
T ss_pred EEEecCCCcHHHHHHHHHHh--CCCE-EEECCCC
Confidence 45556666555555555544 6776 5566654
No 192
>PRK12474 hypothetical protein; Provisional
Probab=35.99 E-value=34 Score=31.23 Aligned_cols=18 Identities=0% Similarity=-0.197 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 259 ~~~~~~~~aDlvl~lG~~ 276 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAK 276 (518)
T ss_pred HHHHHHhhCCEEEEECCC
Confidence 345678899999999975
No 193
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=35.73 E-value=30 Score=30.73 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+.++.|++.++.|.+||+.+++-|+-.|.++
T Consensus 62 ~v~~deAie~Aa~ILv~aKrPllyg~s~tscEA 94 (429)
T COG1029 62 PVDYDEAIEKAAEILVNAKRPLLYGWSSTSCEA 94 (429)
T ss_pred eccHHHHHHHHHHHHHhccCceEeccccchHHH
Confidence 456788999999999999999999999888765
No 194
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=35.62 E-value=22 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=14.4
Q ss_pred eEEeCccccccccCcccccccc
Q psy13183 107 LAELHGNMYVDQCNKCERQFVR 128 (192)
Q Consensus 107 v~elHG~~~~~~C~~C~~~~~~ 128 (192)
|..--.....++|..|+.+|..
T Consensus 19 v~~~s~~~v~W~C~~Cgh~w~~ 40 (55)
T PF14311_consen 19 VTPGSNKKVWWKCPKCGHEWKA 40 (55)
T ss_pred hCcCCCCEEEEECCCCCCeeEc
Confidence 3333344556899999987754
No 195
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=35.23 E-value=29 Score=31.88 Aligned_cols=17 Identities=24% Similarity=-0.048 Sum_probs=14.4
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 266 ~~~~~~~aDlvl~lG~~ 282 (539)
T TIGR03393 266 VKEAIEGADAVICVGVR 282 (539)
T ss_pred HHHHHhhCCEEEEECCc
Confidence 55677899999999985
No 196
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=35.10 E-value=29 Score=32.47 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.9
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+|||+
T Consensus 283 ~~~~~l~~aDlvL~vG~~ 300 (616)
T PRK07418 283 YANFAVTECDLLIAVGAR 300 (616)
T ss_pred HHHHHHHhCCEEEEEcCC
Confidence 355678899999999985
No 197
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=34.87 E-value=29 Score=31.88 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=14.4
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 253 ~~~~l~~aDlvl~lG~~ 269 (549)
T PRK06457 253 SIEAMDKADLLIMLGTS 269 (549)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45677899999999986
No 198
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=34.81 E-value=30 Score=32.18 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 259 ~~~~~~~~aDlvl~lG~~ 276 (588)
T PRK07525 259 AAMELIAKADVVLALGTR 276 (588)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 355678899999999985
No 199
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.73 E-value=54 Score=25.44 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHh---CCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEE
Q psy13183 13 KVLSEWIDK---AKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVV 89 (192)
Q Consensus 13 ~~l~~~i~~---a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~vi 89 (192)
+++.+++++ ...-||+++||+++ ++|..-... ...|-...-. ....-.+.-+|....+...-.-+-
T Consensus 40 ~~~~~~~~~a~~~g~~viIa~AG~aa--~Lpgvva~~--------t~~PVIgvP~-~~~~l~G~daLlS~vqmP~gvpva 108 (156)
T TIGR01162 40 ELMLEYAKEAEERGIKVIIAGAGGAA--HLPGMVAAL--------TPLPVIGVPV-PSKALSGLDSLLSIVQMPSGVPVA 108 (156)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCccc--hhHHHHHhc--------cCCCEEEecC-CccCCCCHHHHHHHhcCCCCCeeE
Confidence 444555544 35689999999974 466332211 1112111000 011122334455555543333488
Q ss_pred eccCcchh
Q psy13183 90 SQNIDGLH 97 (192)
Q Consensus 90 TqNiD~L~ 97 (192)
|-|||+-+
T Consensus 109 tv~I~~~~ 116 (156)
T TIGR01162 109 TVAIGNAG 116 (156)
T ss_pred EEEcCChh
Confidence 88888664
No 200
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.72 E-value=29 Score=32.16 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 274 ~~~~l~~aDlil~vG~~ 290 (570)
T PRK06725 274 ANMAVTECDLLLALGVR 290 (570)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 55678899999999986
No 201
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=34.64 E-value=20 Score=29.63 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=19.1
Q ss_pred HHHHhCC-cEEEEeCCccchhCCCCCC
Q psy13183 17 EWIDKAK-HVVLHTGAGISTSAGIPDF 42 (192)
Q Consensus 17 ~~i~~a~-~ivv~tGAGiS~~sGipdf 42 (192)
++++++. ..+.+||+|+|++-|+||-
T Consensus 23 r~~e~~Gf~ai~~sg~~~a~s~G~pD~ 49 (238)
T PF13714_consen 23 RLAERAGFDAIATSGAGVAASLGYPDG 49 (238)
T ss_dssp HHHHHTT-SEEEEHHHHHHHHTTS-SS
T ss_pred HHHHHcCCCEEEechHHHHHHcCCCCC
Confidence 3444443 4688999999999999986
No 202
>PRK06154 hypothetical protein; Provisional
Probab=34.63 E-value=31 Score=32.01 Aligned_cols=18 Identities=11% Similarity=-0.302 Sum_probs=14.9
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 273 ~~~~~~~~aDlvL~lG~~ 290 (565)
T PRK06154 273 TVAHFLREADVLFGIGCS 290 (565)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 355678899999999986
No 203
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=34.39 E-value=15 Score=20.90 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=7.9
Q ss_pred ccccccccCcccccc
Q psy13183 112 GNMYVDQCNKCERQF 126 (192)
Q Consensus 112 G~~~~~~C~~C~~~~ 126 (192)
|.+.-.+|..|+..+
T Consensus 7 ~~l~~~rC~~Cg~~~ 21 (37)
T PF12172_consen 7 GRLLGQRCRDCGRVQ 21 (37)
T ss_dssp T-EEEEE-TTT--EE
T ss_pred CEEEEEEcCCCCCEe
Confidence 455667899999764
No 204
>PLN02470 acetolactate synthase
Probab=34.08 E-value=31 Score=32.06 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 273 ~~~~~~~aDlvl~lG~~ 289 (585)
T PLN02470 273 ANYAVDSADLLLAFGVR 289 (585)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45677899999999985
No 205
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=34.03 E-value=1.1e+02 Score=29.50 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=24.6
Q ss_pred CCCCCCCcccceEEECCC--CCC-HHHHHHHHHHcccCCEEEEEecC
Q psy13183 148 GFRPCRGTLHDTILDWEH--NLP-QKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 148 ~~~~Cgg~lrP~Vv~fge--~~p-~~~~~~a~~~~~~~DlllviGTS 191 (192)
.|+.||=.+ .++.. .++ ++.++.|.+.+++-.++++=|-+
T Consensus 142 ~C~~Cgp~l----~l~~~~g~~~~~~~i~~aa~~L~~G~IVaipt~g 184 (711)
T TIGR00143 142 ACPRCGPQL----NFVSRGGHAEQDDALLEAAKLLKKGKIIAIKGIG 184 (711)
T ss_pred cCCCCCcEE----EEEeCCCCccchHHHHHHHHHHhCCCEEEEEcCC
Confidence 477998443 22221 122 35677788888888888776644
No 206
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=33.96 E-value=38 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.044 Sum_probs=14.7
Q ss_pred HHHHHHHcccCCEEEEEecCC
Q psy13183 172 INMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 172 ~~~a~~~~~~~DlllviGTSg 192 (192)
.+...++++++|++|+.|-+|
T Consensus 49 ~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 49 RAALIEASREADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHhcCCEEEECCCCC
Confidence 333445567799999998665
No 207
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.95 E-value=31 Score=31.91 Aligned_cols=18 Identities=22% Similarity=0.045 Sum_probs=14.9
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 265 ~~~~~~~~aD~vl~vG~~ 282 (572)
T PRK08979 265 EANMAMHNADLIFGIGVR 282 (572)
T ss_pred HHHHHHHhCCEEEEEcCC
Confidence 355677899999999985
No 208
>PRK08611 pyruvate oxidase; Provisional
Probab=33.93 E-value=31 Score=32.01 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=14.4
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 261 a~~~l~~aDlvl~iG~~ 277 (576)
T PRK08611 261 AYEAMQEADLLIMVGTN 277 (576)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 45677899999999986
No 209
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=33.64 E-value=77 Score=25.65 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
.+.+..+.++++.....++|++.|||
T Consensus 24 ~i~~~a~~i~~~~~~~~~~viVhGgG 49 (231)
T cd04254 24 VLNRIAREIKEVVDLGVEVAIVVGGG 49 (231)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 33444444554444456899999998
No 210
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=33.60 E-value=32 Score=31.86 Aligned_cols=18 Identities=22% Similarity=0.184 Sum_probs=14.9
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+|||+
T Consensus 269 ~~~~~~~~aD~vl~lG~~ 286 (566)
T PRK07282 269 AANIAMTEADFMINIGSR 286 (566)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 355678899999999986
No 211
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=33.57 E-value=26 Score=25.50 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=12.8
Q ss_pred EeCccccccccCcccccccc
Q psy13183 109 ELHGNMYVDQCNKCERQFVR 128 (192)
Q Consensus 109 elHG~~~~~~C~~C~~~~~~ 128 (192)
+++=--...+|..|++.++.
T Consensus 63 ~i~~~p~~~~C~~Cg~~~~~ 82 (114)
T PRK03681 63 HLEEQEAECWCETCQQYVTL 82 (114)
T ss_pred EEEeeCcEEEcccCCCeeec
Confidence 33333446789999987653
No 212
>PRK08197 threonine synthase; Validated
Probab=33.44 E-value=23 Score=31.22 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=11.5
Q ss_pred cccccCccccccccc
Q psy13183 115 YVDQCNKCERQFVRK 129 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~ 129 (192)
..++|..|+++|+.+
T Consensus 6 ~~~~C~~Cg~~~~~~ 20 (394)
T PRK08197 6 SHLECSKCGETYDAD 20 (394)
T ss_pred eEEEECCCCCCCCCC
Confidence 347999999988643
No 213
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=33.43 E-value=26 Score=23.70 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.5
Q ss_pred CcEEEEeCCccchhC
Q psy13183 23 KHVVLHTGAGISTSA 37 (192)
Q Consensus 23 ~~ivv~tGAGiS~~s 37 (192)
+++++++|+|++++.
T Consensus 1 ~~ilivC~~G~~tS~ 15 (89)
T cd05566 1 KKILVACGTGVATST 15 (89)
T ss_pred CEEEEECCCCccHHH
Confidence 468888888888763
No 214
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.96 E-value=31 Score=29.45 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.4
Q ss_pred cEEEEeCCccchhCCCCCCCC
Q psy13183 24 HVVLHTGAGISTSAGIPDFRG 44 (192)
Q Consensus 24 ~ivv~tGAGiS~~sGipdfr~ 44 (192)
+.+.+||+|++.+-|+||+--
T Consensus 40 ~al~~sg~~vA~slG~pD~~~ 60 (289)
T COG2513 40 KALYLSGAGVAASLGLPDLGI 60 (289)
T ss_pred eEEEeccHHHHHhcCCCcccc
Confidence 578899999999999999854
No 215
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=32.96 E-value=79 Score=25.50 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=14.9
Q ss_pred HHHHHHHHHH----hCCcEEEEeCCcc
Q psy13183 11 KIKVLSEWID----KAKHVVLHTGAGI 33 (192)
Q Consensus 11 ~l~~l~~~i~----~a~~ivv~tGAGi 33 (192)
.++++++.|+ +.+.+|+++|||-
T Consensus 22 ~i~~~a~~i~~~~~~g~~vvvV~ggG~ 48 (229)
T cd04239 22 VLKEIAREIKEVVDLGVEVAIVVGGGN 48 (229)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCh
Confidence 3445555444 4468999999875
No 216
>PLN02569 threonine synthase
Probab=32.73 E-value=26 Score=32.05 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=11.4
Q ss_pred ccccCccccccccc
Q psy13183 116 VDQCNKCERQFVRK 129 (192)
Q Consensus 116 ~~~C~~C~~~~~~~ 129 (192)
.++|..|+++|+.+
T Consensus 49 ~l~C~~Cg~~y~~~ 62 (484)
T PLN02569 49 FLECPLTGEKYSLD 62 (484)
T ss_pred ccEeCCCCCcCCCc
Confidence 47999999998654
No 217
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=32.71 E-value=24 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhCCCC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIP 40 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~sGip 40 (192)
+|..+..+++.-=.|||--|||.|..||--
T Consensus 114 nIk~~eDll~~gi~ivV~dGaG~sntsgtg 143 (252)
T COG4588 114 NIKGFEDLLKPGIGIVVNDGAGVSNTSGTG 143 (252)
T ss_pred ccccHHHHhcCCceEEEeCCCcccCCCCce
Confidence 466778888888899999999999998863
No 218
>PRK14558 pyrH uridylate kinase; Provisional
Probab=32.53 E-value=80 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHh----CCcEEEEeCCcc
Q psy13183 10 KKIKVLSEWIDK----AKHVVLHTGAGI 33 (192)
Q Consensus 10 ~~l~~l~~~i~~----a~~ivv~tGAGi 33 (192)
+.|+.+++.|++ -..+++++|+|-
T Consensus 23 ~~i~~la~~i~~~~~~g~~viiV~GgGs 50 (231)
T PRK14558 23 ERVNYLVNEIKSVVEYGFKIGIVIGAGN 50 (231)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECccH
Confidence 345555555443 457888888773
No 219
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.53 E-value=31 Score=32.06 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.7
Q ss_pred HHHHHHcccCCEEEEEecC
Q psy13183 173 NMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 173 ~~a~~~~~~~DlllviGTS 191 (192)
..+..++++|||+|+||++
T Consensus 258 ~~a~~~~~~aDlll~vG~r 276 (550)
T COG0028 258 KAANEALEEADLLLAVGAR 276 (550)
T ss_pred HHHHHHhhcCCEEEEecCC
Confidence 3466788899999999985
No 220
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.47 E-value=52 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhC---CcEEEEeCCccchh
Q psy13183 8 FDKKIKVLSEWIDKA---KHVVLHTGAGISTS 36 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a---~~ivv~tGAGiS~~ 36 (192)
..+.|++++++|.++ .+-|++.|.|-|..
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 446678888888876 44558889998866
No 221
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=32.39 E-value=34 Score=31.99 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=15.1
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++||+
T Consensus 290 ~~~~~l~~aDlvL~lG~~ 307 (612)
T PRK07789 290 AAVAALQRSDLLIALGAR 307 (612)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 356778899999999985
No 222
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=32.38 E-value=81 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
+..+.++++....+.+|+..||| |...|.
T Consensus 28 ~~a~~i~~~~~~~~~vviV~G~G-s~~~~~ 56 (233)
T TIGR02075 28 RIANEIKELVKMGIEVGIVIGGG-NIFRGV 56 (233)
T ss_pred HHHHHHHHHHhCCCeEEEEECCC-HHHHHH
Confidence 33444444443446799999998 544454
No 223
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.34 E-value=29 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=11.9
Q ss_pred cccccCccccccccc
Q psy13183 115 YVDQCNKCERQFVRK 129 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~ 129 (192)
..++|..|+..+..+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 568999999887654
No 224
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=32.26 E-value=28 Score=27.55 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=20.6
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
..+|+.|+-+|..+.... ....|| .||+.|.
T Consensus 113 ~y~C~~~~~r~sfdeA~~------~~F~Cp-----~Cg~~L~ 143 (176)
T COG1675 113 YYVCPNCHVKYSFDEAME------LGFTCP-----KCGEDLE 143 (176)
T ss_pred ceeCCCCCCcccHHHHHH------hCCCCC-----CCCchhh
Confidence 357888988887655332 235677 9998653
No 225
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=32.16 E-value=44 Score=24.52 Aligned_cols=22 Identities=23% Similarity=0.024 Sum_probs=15.5
Q ss_pred HHHHHHHHcccCCEEEEEecCC
Q psy13183 171 DINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGTSg 192 (192)
..+...++.+++|++|..|-+|
T Consensus 47 I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 47 IKEALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC
Confidence 3444445667899999999665
No 226
>PRK08322 acetolactate synthase; Reviewed
Probab=32.16 E-value=35 Score=31.27 Aligned_cols=17 Identities=24% Similarity=0.038 Sum_probs=14.3
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 256 ~~~~l~~aDlil~lG~~ 272 (547)
T PRK08322 256 VHCAIEHADLIINVGHD 272 (547)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45677899999999985
No 227
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.07 E-value=35 Score=31.75 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=14.3
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 281 a~~~~~~aDlvl~lG~~ 297 (587)
T PRK06965 281 ANMAMQHCDVLIAIGAR 297 (587)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 55677899999999985
No 228
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.06 E-value=66 Score=27.40 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCccEEEeccCcchhhh
Q psy13183 72 THMAILELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 72 ~H~~l~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
.=.++....+.|-....+|.|-++-..+
T Consensus 143 vi~al~~Ak~~Ga~~IaIT~~~~s~La~ 170 (296)
T PRK12570 143 VIGALEYAKQIGATTIALSCNPDSPIAK 170 (296)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCChhHH
Confidence 3445556666777778888888876544
No 229
>smart00463 SMR Small MutS-related domain.
Probab=31.99 E-value=1e+02 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.4
Q ss_pred CcEEEEeCCccchh
Q psy13183 23 KHVVLHTGAGISTS 36 (192)
Q Consensus 23 ~~ivv~tGAGiS~~ 36 (192)
+.+.|+||.|-...
T Consensus 32 ~~~~II~G~G~~s~ 45 (80)
T smart00463 32 QKLVIITGKGKHSL 45 (80)
T ss_pred ceEEEEEcccCCCc
Confidence 57999999997644
No 230
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.89 E-value=35 Score=31.51 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 265 ~~~~~l~~aDlvl~lG~~ 282 (574)
T PRK06882 265 EANNAMHESDLILGIGVR 282 (574)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 355678899999999985
No 231
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=31.83 E-value=35 Score=31.30 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.7
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++||+
T Consensus 255 ~~~~~l~~aD~vl~lG~~ 272 (548)
T PRK08978 255 AANLAVQECDLLIAVGAR 272 (548)
T ss_pred HHHHHHHhCCEEEEEcCC
Confidence 355677899999999985
No 232
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.77 E-value=36 Score=31.80 Aligned_cols=17 Identities=12% Similarity=0.138 Sum_probs=14.3
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 274 ~~~~l~~aDlvL~lG~~ 290 (595)
T PRK09107 274 ANMAMHDCDVMLCVGAR 290 (595)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45677899999999985
No 233
>PF02035 Coagulin: Coagulin; InterPro: IPR000275 Coagulogen is a gel-forming protein of hemolymph that hinders the spread of invaders by immobilising them [, ]. The protein contains a single 175- residue polypeptide chain; this is cleaved after Arg-18 and Arg-46 by a clotting enzyme contained in the hemocyte and activated by a bacterial endotoxin (lipopolysaccharide). Cleavage releases two chains of coagulin, A and B, linked by two disulphide bonds, together with the peptide C [, ]. Gel formation results from interlinking of coagulin molecules. Secondary structure prediction suggests the C peptide forms an alpha- helix, which is released during the proteolytic conversion of coagulogen to coagulin gel []. The beta-sheet structure and 16 half-cystines found in the molecule appear to yield a compact protein stable to acid and heat. Mammalian blood coagulation is based on the proteolytically induced polymerisation of fibrinogens. Initially, fibrin monomers noncovalently interact with each other. The resulting homopolymers are further stabilised when the plasma transglutaminase (TGase) intermolecularly cross-links epsilon-(gamma-glutamyl)lysine bonds. In crustaceans, hemolymph coagulation depends on the TGase-mediated cross-linking of specific plasma-clotting proteins, but without the proteolytic cascade. In horseshoe crabs, the proteolytic coagulation cascade triggered by lipopolysaccharides and beta-1,3-glucans leads to the conversion of coagulogen into coagulin, resulting in noncovalent coagulin homopolymers through head-to-tail interaction. Horseshoe crab TGase, however, does not cross-link coagulins intermolecularly. Recently, we found that coagulins are cross-linked on hemocyte cell surface proteins called proxins. This indicates that a cross-linking reaction at the final stage of hemolymph coagulation is an important innate immune system of horseshoe crabs [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region; PDB: 1AOC_A.
Probab=31.72 E-value=25 Score=26.57 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCC
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG 44 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~ 44 (192)
.+..++|+++.+.+.+-.- ++|-|.|.-|+-|.||.
T Consensus 22 ~e~k~kiekaveava~e~~---vsgrgfs~f~~hpvfre 57 (174)
T PF02035_consen 22 QETKDKIEKAVEAVADESG---VSGRGFSIFSHHPVFRE 57 (174)
T ss_dssp HHHHHHHHHHHHHHHHCC----SSTTTCGGCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC---ccccceeeecCChhHhh
Confidence 3556789999888887554 48999999999999985
No 234
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=31.70 E-value=36 Score=31.43 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.4
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 267 ~~~~l~~aD~vl~lG~~ 283 (561)
T PRK06048 267 ANYAIQESDLIIAVGAR 283 (561)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45678899999999985
No 235
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=31.56 E-value=36 Score=31.57 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.3
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++||+
T Consensus 258 ~~~~l~~aDlvl~vG~~ 274 (575)
T TIGR02720 258 ANEALFQADLVLFVGNN 274 (575)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 45677899999999985
No 236
>PRK15456 universal stress protein UspG; Provisional
Probab=31.54 E-value=71 Score=23.18 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.0
Q ss_pred ccCCEEEEEecCC
Q psy13183 180 SIADLSIIESKRG 192 (192)
Q Consensus 180 ~~~DlllviGTSg 192 (192)
.++|| |||||.|
T Consensus 104 ~~~DL-IVmG~~g 115 (142)
T PRK15456 104 LGADV-VVIGSRN 115 (142)
T ss_pred cCCCE-EEEcCCC
Confidence 47898 5669886
No 237
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=31.31 E-value=37 Score=31.57 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.1
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++|||+|+||++
T Consensus 277 ~~~~l~~aDlvL~lG~~ 293 (585)
T CHL00099 277 ANFAVSECDLLIALGAR 293 (585)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 44567899999999986
No 238
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=31.12 E-value=63 Score=28.13 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.|+++++.+.++++.+|+.|-|+..
T Consensus 223 ~~i~~lA~~l~~a~~~~i~~g~g~~~ 248 (415)
T cd02761 223 ETILELAERLKNAKFGVIFWGLGLLP 248 (415)
T ss_pred HHHHHHHHHHHhCCceEEEEeccccc
Confidence 56889999999999999999988873
No 239
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.09 E-value=46 Score=24.35 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.++++++.+++++++ ++.|.|.|-.
T Consensus 2 ~~~~~a~~~~~~~~i-~~~G~G~s~~ 26 (153)
T cd05009 2 DIKELAEKLKEAKSF-YVLGRGPNYG 26 (153)
T ss_pred hHHHHHHHHhccCcE-EEEcCCCCHH
Confidence 467889999998877 5678887644
No 240
>PRK12686 carbamate kinase; Reviewed
Probab=31.00 E-value=1.4e+02 Score=25.73 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEEecc
Q psy13183 13 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQN 92 (192)
Q Consensus 13 ~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~viTqN 92 (192)
+.+..+++ ...|+|.+|.| |||.....+.++....+. + -...=..||...+ -...|+-++
T Consensus 174 ~~I~~Ll~-~G~IpI~~Ggg-----gIPVv~~~~~~~gv~avi----------d--~D~~Aa~LA~~L~--Ad~LIiLTD 233 (312)
T PRK12686 174 DTIRTLVD-GGNIVIACGGG-----GIPVIRDDNTLKGVEAVI----------D--KDFASEKLAEQID--ADLLIILTG 233 (312)
T ss_pred HHHHHHHH-CCCEEEEeCCC-----CCCeEecCCcEEeeeccc----------C--ccHHHHHHHHHcC--CCEEEEEeC
Confidence 34444444 58888888876 788766543322211111 1 1122234444443 345688999
Q ss_pred CcchhhhcC
Q psy13183 93 IDGLHLRSG 101 (192)
Q Consensus 93 iD~L~~~aG 101 (192)
+||++..-+
T Consensus 234 VdGVy~~~~ 242 (312)
T PRK12686 234 VENVFINFN 242 (312)
T ss_pred chhhccCCC
Confidence 999987533
No 241
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=31.00 E-value=38 Score=31.49 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++|||+|+||++
T Consensus 258 ~~~~~l~~aDlvl~lG~~ 275 (578)
T PRK06546 258 AAHEAMHEADLLILLGTD 275 (578)
T ss_pred HHHHHHHhCCEEEEEcCC
Confidence 355678899999999985
No 242
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.90 E-value=36 Score=32.40 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=4.3
Q ss_pred CCCCCCC
Q psy13183 148 GFRPCRG 154 (192)
Q Consensus 148 ~~~~Cgg 154 (192)
.|+.||.
T Consensus 43 fC~~CG~ 49 (645)
T PRK14559 43 HCPNCGA 49 (645)
T ss_pred cccccCC
Confidence 3667773
No 243
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=30.83 E-value=43 Score=20.89 Aligned_cols=41 Identities=20% Similarity=0.533 Sum_probs=25.7
Q ss_pred ceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 106 YLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 106 ~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
-|..+.|. .|..|+-..+...... +........|| .||-.|
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~~~-i~~~~~i~~Cp-----~CgRiL 56 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQELNE-IRKGDEIVFCP-----NCGRIL 56 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHHHH-HHcCCCeEECc-----CCCccC
Confidence 46777665 8999998776554432 22223455677 898654
No 244
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.81 E-value=58 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
++.|++++++|.+|++|+++. -|.|...
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G-~g~S~~v 144 (281)
T COG1737 117 EEALERAVELLAKARRIYFFG-LGSSGLV 144 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEE-echhHHH
Confidence 457899999999999987766 7777553
No 245
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.71 E-value=38 Score=31.29 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.1
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 263 ~~~~l~~aD~vl~lG~~ 279 (563)
T PRK08527 263 ANMAMSECDLLISLGAR 279 (563)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 44677899999999985
No 246
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.58 E-value=30 Score=23.18 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=10.2
Q ss_pred cEEEEeCCccchhC
Q psy13183 24 HVVLHTGAGISTSA 37 (192)
Q Consensus 24 ~ivv~tGAGiS~~s 37 (192)
++++++|+|++++.
T Consensus 1 kilvvC~~G~~tS~ 14 (86)
T cd05563 1 KILAVCGSGLGSSL 14 (86)
T ss_pred CEEEECCCCccHHH
Confidence 37788888887654
No 247
>PLN02775 Probable dihydrodipicolinate reductase
Probab=30.57 E-value=51 Score=28.15 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=25.5
Q ss_pred cceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 157 HDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 157 rP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
+|+.|+.+-+.|+..++.+ +.+.+..+=+||||+|
T Consensus 79 ~~~~VvIDFT~P~a~~~~~-~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNA-ELYCKNGLPFVMGTTG 113 (286)
T ss_pred CCCEEEEECCChHHHHHHH-HHHHHCCCCEEEECCC
Confidence 6885555667888777654 4445577899999998
No 248
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=30.31 E-value=39 Score=30.96 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=14.4
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 256 ~~~~~~~aDlvl~lG~~ 272 (539)
T TIGR02418 256 GDRLLKQADLVITIGYD 272 (539)
T ss_pred HHHHHHhCCEEEEecCc
Confidence 45678899999999975
No 249
>PLN02573 pyruvate decarboxylase
Probab=30.30 E-value=39 Score=31.46 Aligned_cols=17 Identities=12% Similarity=-0.099 Sum_probs=14.0
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 285 ~~~~~~~aDlvl~lG~~ 301 (578)
T PLN02573 285 CAEIVESADAYLFAGPI 301 (578)
T ss_pred HHHHHHhCCEEEEECCc
Confidence 45667889999999975
No 250
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=30.23 E-value=25 Score=24.60 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=21.3
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP 158 (192)
+.+|..|+++..+-+..+-+.---.-.+|. .|+..+-+
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr-----~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILSYLLLRGRCR-----YCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccchHHHHHHhCCCCc-----ccCCCCCh
Confidence 578999998866544332111111123555 88876644
No 251
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=29.87 E-value=23 Score=20.16 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=5.4
Q ss_pred CCCCCCcccceEE
Q psy13183 149 FRPCRGTLHDTIL 161 (192)
Q Consensus 149 ~~~Cgg~lrP~Vv 161 (192)
|+.||+.|.-.|.
T Consensus 3 C~~CG~~l~~~ip 15 (34)
T PF14803_consen 3 CPQCGGPLERRIP 15 (34)
T ss_dssp -TTT--B-EEE--
T ss_pred cccccChhhhhcC
Confidence 4589998877765
No 252
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=29.83 E-value=40 Score=31.44 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=14.2
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 263 a~~~l~~aD~iL~lG~~ 279 (588)
T TIGR01504 263 GNATLLESDFVFGIGNR 279 (588)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45677899999999985
No 253
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=29.80 E-value=55 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
.+.+.++++.+++|+.-+|+-|-|++.+-|
T Consensus 232 ~~~i~e~a~~mKna~Fg~if~GlGlt~S~g 261 (429)
T COG1029 232 IEEIEELADMMKNAKFGAIFVGLGLTSSRG 261 (429)
T ss_pred HHHHHHHHHHHhcCCcceEEEeeceeeccc
Confidence 357899999999999999999999986644
No 254
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=29.72 E-value=38 Score=24.51 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=6.5
Q ss_pred ccccCccccc
Q psy13183 116 VDQCNKCERQ 125 (192)
Q Consensus 116 ~~~C~~C~~~ 125 (192)
..+|..|+..
T Consensus 42 ~~~C~~Cg~~ 51 (111)
T PF14319_consen 42 RYRCEDCGHE 51 (111)
T ss_pred eeecCCCCce
Confidence 4567777754
No 255
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=29.65 E-value=25 Score=26.44 Aligned_cols=36 Identities=28% Similarity=0.679 Sum_probs=22.2
Q ss_pred cccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccc
Q psy13183 113 NMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 113 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP 158 (192)
.-+...|..|+..+.+..... ..--.|+ .|+|.|++
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~-----~~~~~C~-----~C~~~l~~ 155 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSK-----RKRYRCG-----RCGGPLVQ 155 (157)
T ss_pred cceEEEcCCCCCEeeeecccc-----hhhEECC-----CCCCEEEE
Confidence 345678999998775433211 0112466 99998865
No 256
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=29.46 E-value=95 Score=24.60 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCC
Q psy13183 71 VTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFR 150 (192)
Q Consensus 71 ~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 150 (192)
.+|-++..=. -|-...+++++.++..+-. ++|++-.|.-+... -...++.......
T Consensus 19 tthvartARa-fGa~~~yiv~~~~~q~~~v----~~I~~~WGg~fnv~-----~~~s~~~~i~~~k-------------- 74 (176)
T PRK03958 19 TTHVGLTARA-LGADKIILASNDEHVKESV----EDIVERWGGPFEVE-----VTKSWKKEIREWK-------------- 74 (176)
T ss_pred hhHHHHHHHH-cCCceEEEecCcHHHHHHH----HHHHHhcCCceEEE-----EcCCHHHHHHHHH--------------
Confidence 4565543321 2555667777866665554 35665554433311 1111222222221
Q ss_pred CCCCcccceEEECCCCCCHHHHHHHHHHcc-cCCEEEEEec
Q psy13183 151 PCRGTLHDTILDWEHNLPQKDINMGDYNSS-IADLSIIESK 190 (192)
Q Consensus 151 ~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~-~~DlllviGT 190 (192)
. +| .+|.+++||+.+++ .+....+.+. .-++|||+|-
T Consensus 75 ~-~G-~vvhLtmyga~~~~-~~~~ir~~~~~~~p~LIvvGg 112 (176)
T PRK03958 75 D-GG-IVVHLTMYGENIQD-VEPEIREAHRKGEPLLIVVGA 112 (176)
T ss_pred h-CC-cEEEEEEecCCccc-hHHHHHHhhccCCcEEEEEcC
Confidence 1 23 57899999998876 4555554442 3579999983
No 257
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=29.37 E-value=42 Score=31.09 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=15.0
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.++++|++|++|++
T Consensus 277 ~~~~~l~~aDlvl~lG~~ 294 (578)
T PRK06112 277 HLRDLVREADVVLLVGTR 294 (578)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 456778899999999975
No 258
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=29.33 E-value=27 Score=32.37 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.2
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++|||+|+|||+
T Consensus 273 ~~~~~~~aDlvl~lG~~ 289 (569)
T PRK08327 273 PRADLAEADLVLVVDSD 289 (569)
T ss_pred cchhhhhCCEEEEeCCC
Confidence 45667899999999985
No 259
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=29.13 E-value=90 Score=25.59 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.+..+.++++..+...+|+++||+.|.
T Consensus 22 ~i~~~~~~i~~~~~~~~~viiV~sg~~~~ 50 (251)
T cd04242 22 RLASLVEQIAELRNQGKEVILVSSGAVAA 50 (251)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCchhh
Confidence 44444556666655556788887665553
No 260
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=28.98 E-value=84 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHh---CCcEEEEeCCccchh
Q psy13183 10 KKIKVLSEWIDK---AKHVVLHTGAGISTS 36 (192)
Q Consensus 10 ~~l~~l~~~i~~---a~~ivv~tGAGiS~~ 36 (192)
+.|+++++++.+ .+..|++.|+|=|..
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~ 48 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAA 48 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhh
Confidence 445555555554 478889999999954
No 261
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=28.82 E-value=16 Score=21.58 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=16.8
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
++|+.|+......+. ....-.|+ .||-.+..+++
T Consensus 1 m~Cp~Cg~~~~~~D~------~~g~~vC~-----~CG~Vl~e~~i 34 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDP------ERGELVCP-----NCGLVLEENII 34 (43)
T ss_dssp ESBTTTSSSEEEEET------TTTEEEET-----TT-BBEE-TTB
T ss_pred CCCcCCcCCceEEcC------CCCeEECC-----CCCCEeecccc
Confidence 468899875421110 00112566 88877765554
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.80 E-value=28 Score=28.22 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.3
Q ss_pred ccccCccccccccchh
Q psy13183 116 VDQCNKCERQFVRKSA 131 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~ 131 (192)
...|+.|++.+....+
T Consensus 5 ~~~CPvC~~~F~~~~v 20 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKV 20 (214)
T ss_pred ceECCCCCCeeeeeEE
Confidence 4689999998876544
No 263
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.77 E-value=69 Score=24.80 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCcc-ccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN-MYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~-~~~~~C~~C~~~~~~~ 129 (192)
.......|+.|..|.+.|.+..+-..| + +... ..++-|.. -..+.|..||+....+
T Consensus 57 ~is~aTVYRtL~~L~e~Glv~~~~~~~--~-~~~~-----~~~~~~~h~h~H~iC~~CGki~~i~ 113 (169)
T PRK11639 57 QAKPPTVYRALDFLLEQGFVHKVESTN--S-YVLC-----HLFDQPTHTSAMFICDRCGAVKEEC 113 (169)
T ss_pred CCCcchHHHHHHHHHHCCCEEEEecCC--c-EEEe-----ccCCCCCCCCCeEEeCCCCCEEEec
Confidence 456677899999999999886663322 1 1111 01122221 1358899999986543
No 264
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.70 E-value=24 Score=19.47 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=5.0
Q ss_pred CCCCCCcccce
Q psy13183 149 FRPCRGTLHDT 159 (192)
Q Consensus 149 ~~~Cgg~lrP~ 159 (192)
|+.||+++++.
T Consensus 6 C~~CG~~t~~~ 16 (32)
T PF09297_consen 6 CGRCGAPTKPA 16 (32)
T ss_dssp -TTT--BEEE-
T ss_pred cCcCCccccCC
Confidence 34899887654
No 265
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=28.67 E-value=77 Score=21.09 Aligned_cols=30 Identities=23% Similarity=0.593 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHh-----CCcEEEEeCCccchhCCC
Q psy13183 10 KKIKVLSEWIDK-----AKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 10 ~~l~~l~~~i~~-----a~~ivv~tGAGiS~~sGi 39 (192)
+.+..+.++|.+ .+.+.|+||-|.....|+
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc
Confidence 344445555543 378999999995555543
No 266
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=28.62 E-value=59 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=15.8
Q ss_pred HHHHHHHHcccCCEEEEEec
Q psy13183 171 DINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGT 190 (192)
.-+++.+.+.++|++||||.
T Consensus 198 RQ~a~~~la~~vD~miVVGg 217 (280)
T TIGR00216 198 RQDAVKELAPEVDLMIVIGG 217 (280)
T ss_pred HHHHHHHHHhhCCEEEEECC
Confidence 44556677888999999994
No 267
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.55 E-value=55 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+++++++|.+|++| .+.|.|.|...
T Consensus 128 ~~l~~~~~~i~~A~~I-~i~G~G~S~~~ 154 (292)
T PRK11337 128 DEFHRAARFFYQARQR-DLYGAGGSAAI 154 (292)
T ss_pred HHHHHHHHHHHcCCeE-EEEEecHHHHH
Confidence 5688999999999986 46788877543
No 268
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=28.51 E-value=44 Score=30.98 Aligned_cols=18 Identities=22% Similarity=0.014 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++|||+|+||++
T Consensus 255 ~~~~~l~~aDlil~lG~~ 272 (579)
T TIGR03457 255 AAMKLISDADVVLALGTR 272 (579)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 355678899999999975
No 269
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=28.48 E-value=58 Score=27.66 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=15.2
Q ss_pred HHHHHHHHcccCCEEEEEec
Q psy13183 171 DINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGT 190 (192)
.-+++.+.+.++|++||||.
T Consensus 199 RQ~a~~~La~~vD~miVIGg 218 (281)
T PF02401_consen 199 RQEAARELAKEVDAMIVIGG 218 (281)
T ss_dssp HHHHHHHHHCCSSEEEEES-
T ss_pred HHHHHHHHHhhCCEEEEecC
Confidence 34556677789999999995
No 270
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.46 E-value=33 Score=24.39 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=10.4
Q ss_pred cEEEEeCCccchh
Q psy13183 24 HVVLHTGAGISTS 36 (192)
Q Consensus 24 ~ivv~tGAGiS~~ 36 (192)
+|++++|+|+|++
T Consensus 2 ~Ill~C~~GaSSs 14 (99)
T cd05565 2 NVLVLCAGGGTSG 14 (99)
T ss_pred EEEEECCCCCCHH
Confidence 4889999998854
No 271
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=28.44 E-value=85 Score=22.63 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEe
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHT 29 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~t 29 (192)
++++++.++++++.+-+.+-+-++|+|
T Consensus 39 ~~~~~~~~~l~~~i~~~~~~~~vivlt 65 (116)
T TIGR00824 39 ENAETLQEKYNAALADLDTEEEVLFLV 65 (116)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 456667777766666665557788887
No 272
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=28.31 E-value=57 Score=27.70 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=24.5
Q ss_pred ceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 158 DTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 158 P~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|+.|+.+-+.|+..++.+ +.+.+..+-+|+||+|
T Consensus 69 ~d~VvIDFT~P~~~~~n~-~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 69 PELICIDYTHPSAVNDNA-AFYGKHGIPFVMGTTG 102 (275)
T ss_pred CCEEEEECCChHHHHHHH-HHHHHCCCCEEEcCCC
Confidence 674445557888777765 4455677999999998
No 273
>PRK07064 hypothetical protein; Provisional
Probab=28.03 E-value=46 Score=30.47 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.9
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+++++|||+|+||++
T Consensus 257 ~~~~~~~~aDlvl~iG~~ 274 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSR 274 (544)
T ss_pred HHHHHHHhCCEEEEecCC
Confidence 356778899999999985
No 274
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=27.91 E-value=1e+02 Score=20.63 Aligned_cols=25 Identities=8% Similarity=0.344 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHT 29 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~t 29 (192)
..+++++++++.+.|++.+.+|++.
T Consensus 32 E~sL~~kv~qv~~qL~~G~avI~~s 56 (70)
T PF06794_consen 32 ELSLEEKVEQVKQQLKSGEAVIVFS 56 (70)
T ss_dssp ---HHHHHHHHHHHHHTTSEEEEE-
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEC
Confidence 4567889999999999988888874
No 275
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=27.89 E-value=45 Score=30.78 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=13.9
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 267 ~~~~~~~aDlvl~lG~~ 283 (572)
T PRK06456 267 ASMAALESDAMLVVGAR 283 (572)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45567789999999985
No 276
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=27.73 E-value=37 Score=28.84 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.7
Q ss_pred cEEEEeCCccchhCCCCCC
Q psy13183 24 HVVLHTGAGISTSAGIPDF 42 (192)
Q Consensus 24 ~ivv~tGAGiS~~sGipdf 42 (192)
..+.+||+|+|++-|+||-
T Consensus 40 ~ai~~ss~~~a~s~G~pD~ 58 (285)
T TIGR02320 40 DGIWSSSLTDSTSRGVPDI 58 (285)
T ss_pred CEEEechHHHHHHCCCCCc
Confidence 4778999999998999985
No 277
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=27.66 E-value=41 Score=30.96 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=0.0
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|+||++
T Consensus 279 ~~~~~l~~aD~vl~vG~~ 296 (568)
T PRK07449 279 KAAEELLQPDIVIQFGSP 296 (568)
T ss_pred hhhhhcCCCCEEEEeCCC
No 278
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.64 E-value=95 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=11.8
Q ss_pred hCCcEEEEeCCccchh
Q psy13183 21 KAKHVVLHTGAGISTS 36 (192)
Q Consensus 21 ~a~~ivv~tGAGiS~~ 36 (192)
+...=||++|||.++.
T Consensus 55 ~~g~~viIAgAGgAAH 70 (162)
T COG0041 55 ERGVKVIIAGAGGAAH 70 (162)
T ss_pred HCCCeEEEecCcchhh
Confidence 3455699999999744
No 279
>PRK04351 hypothetical protein; Provisional
Probab=27.64 E-value=31 Score=26.44 Aligned_cols=38 Identities=29% Similarity=0.721 Sum_probs=23.7
Q ss_pred CccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccc
Q psy13183 111 HGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 111 HG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP 158 (192)
-+.-+..+|..|+..+.+.. .+. ..--+|. .|+|.|+.
T Consensus 107 ~~~~y~Y~C~~Cg~~~~r~R---r~n--~~~yrCg-----~C~g~L~~ 144 (149)
T PRK04351 107 QKKNYLYECQSCGQQYLRKR---RIN--TKRYRCG-----KCRGKLKL 144 (149)
T ss_pred CCceEEEECCCCCCEeeeee---ecC--CCcEEeC-----CCCcEeee
Confidence 45556789999998775432 111 1223455 99998864
No 280
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=27.50 E-value=28 Score=18.16 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=11.2
Q ss_pred cccCccccccccchhh
Q psy13183 117 DQCNKCERQFVRKSAT 132 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~ 132 (192)
..|..|++.|..+.+.
T Consensus 3 ~~C~~CgR~F~~~~l~ 18 (25)
T PF13913_consen 3 VPCPICGRKFNPDRLE 18 (25)
T ss_pred CcCCCCCCEECHHHHH
Confidence 5688888888655443
No 281
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.50 E-value=36 Score=24.04 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=18.1
Q ss_pred cccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCC
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRG 154 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg 154 (192)
.-.+|-+||.++..+.+. ...+|| .|.+
T Consensus 57 ~Pa~CkkCGfef~~~~ik-------~pSRCP-----~CKS 84 (97)
T COG3357 57 RPARCKKCGFEFRDDKIK-------KPSRCP-----KCKS 84 (97)
T ss_pred cChhhcccCccccccccC-------CcccCC-----cchh
Confidence 357899999887653211 234676 8874
No 282
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.46 E-value=92 Score=23.49 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=35.9
Q ss_pred cCCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccch
Q psy13183 65 DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 65 ~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~ 130 (192)
....+...|+.|..|.+.|.+..+-..|-=-.++... |+.-+...|..||+..+...
T Consensus 51 p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~---------~~~H~HliC~~CG~v~e~~~ 107 (145)
T COG0735 51 PGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNS---------EPHHHHLICLDCGKVIEFED 107 (145)
T ss_pred CCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCC---------CCcccEEEecCCCCEEEecc
Confidence 4566788899999999988876555433211111111 11356678999998765443
No 283
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=27.30 E-value=48 Score=30.52 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=14.2
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++|||+|++|++
T Consensus 264 ~~~~l~~aDlvl~lG~~ 280 (557)
T PRK08199 264 LAARIREADLVLAVGTR 280 (557)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 55677899999999975
No 284
>PRK11269 glyoxylate carboligase; Provisional
Probab=27.14 E-value=47 Score=30.87 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 264 ~~~~~~~aDlvl~lG~~ 280 (591)
T PRK11269 264 GNATLLASDFVLGIGNR 280 (591)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 45667899999999975
No 285
>PRK08266 hypothetical protein; Provisional
Probab=27.12 E-value=45 Score=30.51 Aligned_cols=18 Identities=17% Similarity=-0.097 Sum_probs=14.7
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|++
T Consensus 256 ~~~~~~~~aDlvl~lG~~ 273 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSR 273 (542)
T ss_pred HHHHHHHhCCEEEEeCCC
Confidence 345677899999999985
No 286
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=27.11 E-value=2.3e+02 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
.+.+..+.+.+++++.+..|++|=||--+++|+
T Consensus 29 ~l~~A~~i~~~m~~~~~~~ifLt~tg~mvsaGl 61 (301)
T TIGR00321 29 RIGEADKIWKEMCFDEEITIFMGYAGNLVPSGM 61 (301)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccccchhhH
Confidence 445566667777755555566666666666766
No 287
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.05 E-value=48 Score=30.50 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.2
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|+||++
T Consensus 261 ~~~~l~~aD~vl~lG~~ 277 (558)
T TIGR00118 261 ANLAVHECDLIIAVGAR 277 (558)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45677899999999975
No 288
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.02 E-value=48 Score=30.67 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=14.6
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|++
T Consensus 265 ~~~~~l~~aD~il~vG~~ 282 (574)
T PRK06466 265 EANMAMHHADVILAVGAR 282 (574)
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 345677899999999985
No 289
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.90 E-value=1.1e+02 Score=23.34 Aligned_cols=34 Identities=38% Similarity=0.689 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCC------ccchh---CCCCCCCCC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGA------GISTS---AGIPDFRGP 45 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGA------GiS~~---sGipdfr~~ 45 (192)
+++.+++..- +.++||+.|+ ||.++ .|=|+|-++
T Consensus 56 rvk~~aEk~g-~enlvVvlG~aeaE~a~laAETVt~GDPTfaGP 98 (150)
T PF04723_consen 56 RVKDLAEKYG-AENLVVVLGAAEAEAAGLAAETVTNGDPTFAGP 98 (150)
T ss_pred HHHHHHHhcC-CccEEEEecCCChhhhhhhhhhhccCCCccccc
Confidence 3555555433 4667777765 55433 467999987
No 290
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=26.65 E-value=32 Score=26.01 Aligned_cols=12 Identities=17% Similarity=0.554 Sum_probs=7.5
Q ss_pred ccccCccccccc
Q psy13183 116 VDQCNKCERQFV 127 (192)
Q Consensus 116 ~~~C~~C~~~~~ 127 (192)
.++|+.|++.|+
T Consensus 124 f~~C~~C~kiyW 135 (147)
T PF01927_consen 124 FWRCPGCGKIYW 135 (147)
T ss_pred EEECCCCCCEec
Confidence 456666666664
No 291
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=26.58 E-value=43 Score=28.52 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=17.6
Q ss_pred CcEEEEeCCccchhCCCCCC
Q psy13183 23 KHVVLHTGAGISTSAGIPDF 42 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipdf 42 (192)
=..+.+||+|+|+.-|+||.
T Consensus 34 f~Ai~~sg~~~a~~lG~pD~ 53 (285)
T TIGR02317 34 FEAIYLSGAAVAASLGLPDL 53 (285)
T ss_pred CCEEEEcHHHHHHhCCCCCC
Confidence 36789999999999999985
No 292
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=26.55 E-value=1.1e+02 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCCC-------CCCCCC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGI-------PDFRGP 45 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi-------pdfr~~ 45 (192)
..++.+++.+++-.++ |..|||-|---|+ |||--+
T Consensus 48 ~Av~~~~~~l~~GGRL-iY~GAGTSGRLGvlDAsEcPPTfgv~ 89 (298)
T COG2103 48 AAVDIIAAALKQGGRL-IYIGAGTSGRLGVLDASECPPTFGVP 89 (298)
T ss_pred HHHHHHHHHHHcCCeE-EEEcCCcccchhccchhhCCCCcCCC
Confidence 3455566666665555 7899999977775 777654
No 293
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=26.40 E-value=52 Score=30.57 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|++
T Consensus 262 ~~~~~l~~aD~vl~lG~~ 279 (586)
T PRK06276 262 AANYSVTESDVLIAIGCR 279 (586)
T ss_pred HHHHHHHcCCEEEEECCC
Confidence 355678899999999975
No 294
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.36 E-value=70 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+++.++++.|.++++-|.+.|.|.|...
T Consensus 29 ~~~~~~~~~l~~~~~~I~i~G~G~S~~~ 56 (321)
T PRK11543 29 DDFVRAANIILHCEGKVVVSGIGKSGHI 56 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChhHHH
Confidence 4688888899888878889999988654
No 295
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=26.13 E-value=50 Score=30.51 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=14.3
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 275 ~~~~l~~aDlvL~lG~~ 291 (571)
T PRK07710 275 ANMALYECDLLINIGAR 291 (571)
T ss_pred HHHHHHhCCEEEEeCCC
Confidence 55677899999999985
No 296
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=26.06 E-value=1.4e+02 Score=23.96 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.+.+.++.++++.+...++|++.|||-.+
T Consensus 12 ~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~ 42 (248)
T cd02115 12 EERLRNLARILVKLASEGGRVVVVHGAGPQI 42 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCc
Confidence 3334444444444433356899999988654
No 297
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=26.05 E-value=1.1e+02 Score=22.63 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
|+.+.+.+.+ .+++++++-||..-|.|.+
T Consensus 41 Dd~~~i~~~l---~~~~~~~D~VittGG~g~~ 69 (144)
T PF00994_consen 41 DDPDAIKEAL---RRALDRADLVITTGGTGPG 69 (144)
T ss_dssp SSHHHHHHHH---HHHHHTTSEEEEESSSSSS
T ss_pred CCHHHHHHHH---HhhhccCCEEEEcCCcCcc
Confidence 5556665444 6666777555444444544
No 298
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.00 E-value=43 Score=22.56 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.3
Q ss_pred hhhhcCCCCCceEEe
Q psy13183 96 LHLRSGLSRKYLAEL 110 (192)
Q Consensus 96 L~~~aG~~~~~v~el 110 (192)
.|+++|+|.++|+|+
T Consensus 63 ~~~~aG~p~d~I~eV 77 (77)
T PF14026_consen 63 HARRAGLPADRITEV 77 (77)
T ss_pred HHHHcCCCcceEEEC
Confidence 578899998888874
No 299
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=25.99 E-value=2.3e+02 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
.+.+..+.+.+++++.+..|++|=||--+++|+
T Consensus 30 ~l~~A~~i~~~Ml~d~~~~ifL~~tg~mvsaGl 62 (329)
T PRK00805 30 KLGESVRVWTEMLKDPDNTIFMGLSGAMVPAGM 62 (329)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccchHHHHH
Confidence 445566667777755555555555555555665
No 300
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=25.95 E-value=52 Score=30.44 Aligned_cols=17 Identities=12% Similarity=0.007 Sum_probs=14.1
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 259 ~~~~~~~aDlvl~lG~~ 275 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTD 275 (574)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 34677899999999985
No 301
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=25.87 E-value=43 Score=25.31 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=12.5
Q ss_pred ccccccccCccccccc
Q psy13183 112 GNMYVDQCNKCERQFV 127 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~ 127 (192)
|.+...+|.+||+.|.
T Consensus 25 ~kl~g~kC~~CG~v~~ 40 (140)
T COG1545 25 GKLLGTKCKKCGRVYF 40 (140)
T ss_pred CcEEEEEcCCCCeEEc
Confidence 5566789999998764
No 302
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=25.79 E-value=81 Score=27.45 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.|+++++.+.+++..+++.|.|+..
T Consensus 228 ~~~i~~la~~l~~a~~~~i~~g~g~~~ 254 (421)
T TIGR03129 228 KEKILELAEILKNAKFGVIFFGLGLTS 254 (421)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccc
Confidence 356889999999999988999988853
No 303
>PRK00919 GMP synthase subunit B; Validated
Probab=25.74 E-value=79 Score=27.20 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEeCC
Q psy13183 2 FDSKEDFDKKIKVLSEWIDKAKHVVLHTGA 31 (192)
Q Consensus 2 ~d~~~~~~~~l~~l~~~i~~a~~ivv~tGA 31 (192)
||....+++++++|.+.+++.+.+|.++|.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~kVlVa~SGG 31 (307)
T PRK00919 2 VDPEKFIEEAIEEIREEIGDGKAIIALSGG 31 (307)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 577788889999999999985555555554
No 304
>KOG4126|consensus
Probab=25.73 E-value=78 Score=29.28 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=18.7
Q ss_pred hCCcEEEEeCCccchhCCCCCCCCCC
Q psy13183 21 KAKHVVLHTGAGISTSAGIPDFRGPN 46 (192)
Q Consensus 21 ~a~~ivv~tGAGiS~~sGipdfr~~~ 46 (192)
.||+|++|.|-||+..+ +-..|...
T Consensus 71 kaKNVIlFlgDGMg~~T-vtAaRi~~ 95 (529)
T KOG4126|consen 71 KAKNVILFLGDGMGVST-VTAARILK 95 (529)
T ss_pred cCceEEEEeeCCCChhh-hHHhhhhc
Confidence 57999999999999765 44455443
No 305
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=25.26 E-value=63 Score=18.12 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=7.2
Q ss_pred ccCccccccc
Q psy13183 118 QCNKCERQFV 127 (192)
Q Consensus 118 ~C~~C~~~~~ 127 (192)
.|..|+.+..
T Consensus 2 ~C~~Cg~~~~ 11 (32)
T PF03604_consen 2 ICGECGAEVE 11 (32)
T ss_dssp BESSSSSSE-
T ss_pred CCCcCCCeeE
Confidence 5888998765
No 306
>KOG1185|consensus
Probab=25.22 E-value=1.1e+02 Score=28.34 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchh------------CCCCCCCCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTS------------AGIPDFRGP 45 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~------------sGipdfr~~ 45 (192)
.++|++++++|++||+-+++.|-|.--+ .|||-|-++
T Consensus 204 ~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptp 252 (571)
T KOG1185|consen 204 PSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTP 252 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCc
Confidence 4678999999999998666666665433 488877654
No 307
>PRK00304 hypothetical protein; Provisional
Probab=25.14 E-value=1e+02 Score=20.94 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEe
Q psy13183 4 SKEDFDKKIKVLSEWIDKAKHVVLHT 29 (192)
Q Consensus 4 ~~~~~~~~l~~l~~~i~~a~~ivv~t 29 (192)
...+++++++++.+.|++.+.+|++.
T Consensus 30 ~E~sL~~kv~qv~~qL~~G~~vIvfs 55 (75)
T PRK00304 30 DETPLETRVLRVRQALTKGQAVILFD 55 (75)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEC
Confidence 34478899999999999988888874
No 308
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=25.14 E-value=53 Score=24.28 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=26.2
Q ss_pred cceEEECCCCCCHH---HHHHHHHHcccCCEEEEEec
Q psy13183 157 HDTILDWEHNLPQK---DINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 157 rP~Vv~fge~~p~~---~~~~a~~~~~~~DlllviGT 190 (192)
..+|++....+|.. ..+.+.+...+++.+|.+||
T Consensus 45 ~~diliVeG~v~~~~~~~~e~~~~~~~~a~~vIAvGt 81 (131)
T PF01058_consen 45 EADILIVEGSVPRNMEEALEWLKELRPKAKAVIAVGT 81 (131)
T ss_dssp TTEEEEEESBEETGGEEHHHHHHHHHGCSSEEEEEHH
T ss_pred CceEEEEEeeccCCchHHHHHHHHHccCCceeEcCCC
Confidence 56777777666433 57778888999999999996
No 309
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.13 E-value=55 Score=30.18 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.1
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 271 ~~~~l~~aDlvl~lG~~ 287 (564)
T PRK08155 271 TNYILQEADLLIVLGAR 287 (564)
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45577899999999985
No 310
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=25.07 E-value=78 Score=28.28 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
.++|+++++.+.++++.+|+.|.|+
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~ 276 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLS 276 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCc
Confidence 4668899999999999999999886
No 311
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.02 E-value=1.6e+02 Score=19.05 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEeCCc
Q psy13183 8 FDKKIKVLSEWIDKAK-HVVLHTGAG 32 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~-~ivv~tGAG 32 (192)
....+..+.+++++.. ...-+||||
T Consensus 32 ~~~~i~~~~~~~~~~Ga~~~~~sGsG 57 (85)
T PF08544_consen 32 LTPEIDELKEAAEENGALGAKMSGSG 57 (85)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEETTS
T ss_pred cCHHHHHHHHHHHHCCCCceecCCCC
Confidence 3456888888888877 788888983
No 312
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=25.02 E-value=94 Score=26.87 Aligned_cols=32 Identities=19% Similarity=0.540 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCC
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIP 40 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGip 40 (192)
++++++-++++..++++. -+||++| |.++|+|
T Consensus 113 ~~~~~~~l~~~~~~l~~~-d~VvlsG---SlP~g~~ 144 (310)
T COG1105 113 EAELEQFLEQLKALLESD-DIVVLSG---SLPPGVP 144 (310)
T ss_pred HHHHHHHHHHHHHhcccC-CEEEEeC---CCCCCCC
Confidence 344444555555555554 4588888 5566665
No 313
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=24.80 E-value=1.2e+02 Score=21.76 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeC
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTG 30 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tG 30 (192)
++.+++.++++++.+-+.+.+.++|+|=
T Consensus 38 ~~~~~~~~~i~~~i~~~~~~~~viil~D 65 (122)
T cd00006 38 ESPDDLLEKIKAALAELDSGEGVLILTD 65 (122)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3556667777766666655678888874
No 314
>PRK08617 acetolactate synthase; Reviewed
Probab=24.74 E-value=52 Score=30.21 Aligned_cols=17 Identities=35% Similarity=0.204 Sum_probs=14.0
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 262 ~~~~~~~aDlvl~lG~~ 278 (552)
T PRK08617 262 GDELLKKADLVITIGYD 278 (552)
T ss_pred HHHHHHhCCEEEEecCc
Confidence 44667899999999975
No 315
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=24.73 E-value=61 Score=29.64 Aligned_cols=19 Identities=11% Similarity=-0.113 Sum_probs=15.3
Q ss_pred HHHHHHcccCCEEEEEecC
Q psy13183 173 NMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 173 ~~a~~~~~~~DlllviGTS 191 (192)
..+.+.+++||++|++|++
T Consensus 264 ~~~~~~l~~aDlvl~lG~~ 282 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAP 282 (530)
T ss_pred HHHHHHHhhCCEEEEECCc
Confidence 3455678899999999974
No 316
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=24.63 E-value=1.1e+02 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
.++.++++.+.+++++.++++.|-|=.+-||+
T Consensus 69 ~~~~~~~ir~~le~~d~~~i~~slgGGTGsG~ 100 (192)
T smart00864 69 AEESLDEIREELEGADGVFITAGMGGGTGTGA 100 (192)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCccccH
Confidence 34567888888899999999998888888886
No 317
>PRK04966 hypothetical protein; Provisional
Probab=24.53 E-value=1e+02 Score=20.78 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHT 29 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~t 29 (192)
..+++++++++...|++.+.+|++.
T Consensus 32 E~sl~~kv~qv~~qL~~G~~viv~s 56 (72)
T PRK04966 32 ERSLEQKVADVKRQLQSGEAVLVWS 56 (72)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEC
Confidence 4578899999999999988888874
No 318
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.50 E-value=79 Score=27.14 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.8
Q ss_pred HHHHHHHHcccCCEEEEEec
Q psy13183 171 DINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGT 190 (192)
..+++.+.+.++|++||||.
T Consensus 200 RQ~a~~~La~~vD~miVVGg 219 (298)
T PRK01045 200 RQEAVKELAPQADLVIVVGS 219 (298)
T ss_pred HHHHHHHHHhhCCEEEEECC
Confidence 44556677888999999995
No 319
>PRK09939 putative oxidoreductase; Provisional
Probab=24.32 E-value=91 Score=30.30 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
++|+++++++.+|++.+++.|-|+..
T Consensus 346 ~~I~~~A~~~a~a~~~ii~~gmGitq 371 (759)
T PRK09939 346 TQIAELADAYAAAERTIICYGMGITQ 371 (759)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccc
Confidence 57899999999999999999999884
No 320
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=24.30 E-value=75 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=15.3
Q ss_pred HHHHHHHHcccCCEEEEEec
Q psy13183 171 DINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGT 190 (192)
.-+++.+.+.++|++||||.
T Consensus 199 RQ~a~~~La~~vD~miVVGg 218 (281)
T PRK12360 199 RQESAKELSKEVDVMIVIGG 218 (281)
T ss_pred HHHHHHHHHHhCCEEEEecC
Confidence 34456667778999999995
No 321
>PRK12354 carbamate kinase; Reviewed
Probab=24.28 E-value=3.5e+02 Score=23.32 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcc-cccccCCCCcccccccCCCCCHHHHHHHHHHHcCCccEEEe
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVS 90 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~-~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~~~g~~~~viT 90 (192)
++.+..+++ +..|||.+|.| |||-..+.++.+ .... +-+ -...=..||...+ -...++-
T Consensus 165 ~~~I~~Ll~-~g~ivIa~GGG-----GIPV~~~~~~~~~gv~a----------ViD--~D~~Aa~LA~~l~--Ad~LiiL 224 (307)
T PRK12354 165 IRPIRWLLE-KGHLVICAGGG-----GIPVVYDADGKLHGVEA----------VID--KDLAAALLAEQLD--ADLLLIL 224 (307)
T ss_pred HHHHHHHHH-CCCEEEEeCCC-----ccCeEecCCCceeeeee----------cCC--ccHHHHHHHHHcC--CCEEEEE
Confidence 455555555 47888888876 788777654321 1111 111 1122233444443 3456888
Q ss_pred ccCcchhhhcCCC
Q psy13183 91 QNIDGLHLRSGLS 103 (192)
Q Consensus 91 qNiD~L~~~aG~~ 103 (192)
++|||++..-|-|
T Consensus 225 TdVdGVy~~~~~p 237 (307)
T PRK12354 225 TDVDAVYLDWGKP 237 (307)
T ss_pred eCCcceecCCCCC
Confidence 8999999775544
No 322
>PHA02768 hypothetical protein; Provisional
Probab=24.27 E-value=65 Score=20.51 Aligned_cols=40 Identities=15% Similarity=0.450 Sum_probs=21.6
Q ss_pred cccCccccccccchhh-hhccCCCCCCCCCCCCCCCCCCc-ccceEE
Q psy13183 117 DQCNKCERQFVRKSAT-NSVGQKNLNIPCPYRGFRPCRGT-LHDTIL 161 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~-~~~~~~~~~~~C~~~~~~~Cgg~-lrP~Vv 161 (192)
..|+.|++.|...... .........-+|. .|+-. .+++.+
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~-----~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLS-----NCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCC-----cccceeccccee
Confidence 4899999998765432 2222222234565 77632 344443
No 323
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=24.27 E-value=1.2e+02 Score=24.67 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHhC--CcEEEEeCCc
Q psy13183 4 SKEDFDKKIKVLSEWIDKA--KHVVLHTGAG 32 (192)
Q Consensus 4 ~~~~~~~~l~~l~~~i~~a--~~ivv~tGAG 32 (192)
..+.....++.|.+.++.| .+++|+-|||
T Consensus 77 ~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 77 NDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred hhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 3344455688899999985 5899999998
No 324
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=24.23 E-value=91 Score=27.28 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.|.++++.+.++++.+|+.|.|+.
T Consensus 239 ~~i~~~a~~l~~a~~~~i~~G~g~~ 263 (414)
T cd02772 239 EEARKIAASLVSAERAAVFLGNLAQ 263 (414)
T ss_pred HHHHHHHHHHhcCCCeEEEEccchh
Confidence 4688899999999998999998886
No 325
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=24.15 E-value=36 Score=19.82 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=7.8
Q ss_pred CCCCCCcccceE
Q psy13183 149 FRPCRGTLHDTI 160 (192)
Q Consensus 149 ~~~Cgg~lrP~V 160 (192)
||.||+.|.-.-
T Consensus 4 CP~Cg~~lv~r~ 15 (39)
T PF01396_consen 4 CPKCGGPLVLRR 15 (39)
T ss_pred CCCCCceeEEEE
Confidence 449998775433
No 326
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.01 E-value=1.5e+02 Score=28.67 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCCCCCCcccceEEEC--CCCC---CHHHHHHHHHHcccCCEEEEEecC
Q psy13183 148 GFRPCRGTLHDTILDW--EHNL---PQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 148 ~~~~Cgg~lrP~Vv~f--ge~~---p~~~~~~a~~~~~~~DlllviGTS 191 (192)
.||.|| |.+-|+ ++.. ....+..|.+.++....+=|-|.=
T Consensus 175 aCp~CG----P~~~l~~~~g~~~~~~~~ai~~a~klL~~G~IvAIKGiG 219 (750)
T COG0068 175 ACPKCG----PHLFLVNHDGEAIAEANEAIRKAAKLLKVGKIVAIKGIG 219 (750)
T ss_pred cCcccC----CCeEEEcCCCcchhhhhHHHHHHHHHHhhCCEEEEeecC
Confidence 478997 344444 4432 222567777888887777776653
No 327
>PRK00358 pyrH uridylate kinase; Provisional
Probab=24.00 E-value=1.4e+02 Score=23.97 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
+.+-.+.++++.+...++|+++|+| +.+.+
T Consensus 25 i~~~~~~i~~~~~~g~~vvlV~gGG-~~a~~ 54 (231)
T PRK00358 25 LDRIAEEIKEVVELGVEVAIVVGGG-NIFRG 54 (231)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCC-HHHHH
Confidence 3333444444444456899999987 54444
No 328
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=23.95 E-value=35 Score=16.72 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=9.5
Q ss_pred ccCccccccccch
Q psy13183 118 QCNKCERQFVRKS 130 (192)
Q Consensus 118 ~C~~C~~~~~~~~ 130 (192)
+|..|++.|....
T Consensus 2 ~C~~C~~~f~~~~ 14 (23)
T PF00096_consen 2 KCPICGKSFSSKS 14 (23)
T ss_dssp EETTTTEEESSHH
T ss_pred CCCCCCCccCCHH
Confidence 6888988876543
No 329
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=23.95 E-value=67 Score=28.34 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhC----CcEEEEeCC
Q psy13183 6 EDFDKKIKVLSEWIDKA----KHVVLHTGA 31 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a----~~ivv~tGA 31 (192)
.++++.|.+|.+.+-+| ++|||.||+
T Consensus 46 ~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGs 75 (363)
T PF04864_consen 46 PELERQIRRLHRVVGNAVTDGRYIVFGTGS 75 (363)
T ss_dssp HHHHHHHHHHHHHH-SB--TTSEEEEECHH
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEcCCH
Confidence 57788999999999986 789998886
No 330
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=23.86 E-value=29 Score=22.97 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=14.8
Q ss_pred EeCccccccccCccccc
Q psy13183 109 ELHGNMYVDQCNKCERQ 125 (192)
Q Consensus 109 elHG~~~~~~C~~C~~~ 125 (192)
+.+|.+-+.+|+.|+.+
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78888999999999864
No 331
>PRK14557 pyrH uridylate kinase; Provisional
Probab=23.75 E-value=1.4e+02 Score=24.65 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
.+.+..+.|+++++....++|..|||
T Consensus 28 ~i~~~a~~i~~~~~~g~~vvVVvGgG 53 (247)
T PRK14557 28 RLEHIANEILSIVDLGIEVSIVIGGG 53 (247)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 34444555555555567899999997
No 332
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=23.74 E-value=1.2e+02 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
..+.+.+.+++.++++|.+-+|+|.++
T Consensus 62 ~~~~i~~~~~~~~~VlVHC~~G~~RS~ 88 (133)
T PF00782_consen 62 AVEFIENAISEGGKVLVHCKAGLSRSG 88 (133)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSHHH
T ss_pred HHHhhhhhhcccceeEEEeCCCcccch
Confidence 334444444456899999999999654
No 333
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=23.73 E-value=1.7e+02 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
++++.+.+-.+.++++.+...++|+++|||..
T Consensus 12 ~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~ 43 (239)
T cd04246 12 ADIERIKRVAERIKKAVKKGYQVVVVVSAMGG 43 (239)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEECCCCc
Confidence 44445555556666555544566666665433
No 334
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=23.71 E-value=38 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.574 Sum_probs=21.2
Q ss_pred ccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccc
Q psy13183 114 MYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHD 158 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP 158 (192)
-+..+|..|+..+.+..-... ..--.|. .|||.|.+
T Consensus 110 ~~~y~C~~C~~~~~~~rr~~~----~~~y~C~-----~C~g~l~~ 145 (146)
T smart00731 110 KYPYRCTGCGQRYLRVRRSNN----VSRYRCG-----KCGGKLIL 145 (146)
T ss_pred eEEEECCCCCCCCceEccccC----cceEEcC-----CCCCEEEe
Confidence 467899999987653221111 0122455 99998764
No 335
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.37 E-value=95 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
++|+++++.+.++++.+++.|.|+.
T Consensus 266 ~~i~~lA~~~~~~~~~~i~~g~g~~ 290 (512)
T cd02753 266 EDIREAARMYATAKSAAILWGMGVT 290 (512)
T ss_pred HHHHHHHHHHHhCCCeEEEeCchhh
Confidence 5689999999999999999998875
No 336
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=23.37 E-value=78 Score=33.56 Aligned_cols=36 Identities=25% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchh-----------CCCCCCCCC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTS-----------AGIPDFRGP 45 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~-----------sGipdfr~~ 45 (192)
+.+++++++|++|++.||+.|+|...+ -|+|.+-+.
T Consensus 512 ~~i~~a~~~L~~AkRPvIvaG~G~~~~~a~~~~~LAe~l~~PV~tt~ 558 (1655)
T PLN02980 512 GQITEVLEVIQEAKRGLLLIGAIHTEDDIWAALLLAKHLMWPVVADI 558 (1655)
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHhCCCeEEEeC
Confidence 458889999999999999999997532 377766443
No 337
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=23.32 E-value=1.1e+02 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
|+.+.+.+.+++ ++++++ +||.| .|.|
T Consensus 42 Dd~~~I~~~l~~---~~~~~d-liitt-GG~g 68 (135)
T smart00852 42 DDKEAIKEALRE---ALERAD-LVITT-GGTG 68 (135)
T ss_pred CCHHHHHHHHHH---HHhCCC-EEEEc-CCCC
Confidence 555555544444 444555 44444 3444
No 338
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=23.31 E-value=48 Score=28.43 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=11.4
Q ss_pred ccccCccccccccchh
Q psy13183 116 VDQCNKCERQFVRKSA 131 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~ 131 (192)
+.+|+.|++......+
T Consensus 38 w~kc~~C~~~~~~~~l 53 (296)
T CHL00174 38 WVQCENCYGLNYKKFL 53 (296)
T ss_pred eeECCCccchhhHHHH
Confidence 6689999887655544
No 339
>PF01916 DS: Deoxyhypusine synthase; InterPro: IPR002773 Eukaryotic initiation factor 5A (eIF-5A), now considered to be an elongation factor (see IPR001884 from INTERPRO), contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) 2.5.1.46 from EC. The enzyme catalyses the following reaction: Spermidine + [eIF-5A]-lysine = 1,3-diaminopropane + [eIF-5A]-deoxyhypusine The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation []. The structure is known for this enzyme [] in complex with its NAD+ cofactor.; GO: 0008612 peptidyl-lysine modification to hypusine; PDB: 1RQD_A 1RLZ_A 1DHS_A 1ROZ_B.
Probab=23.31 E-value=2.2e+02 Score=24.49 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhC----CcEEEEeCCccchhCCC
Q psy13183 7 DFDKKIKVLSEWIDKA----KHVVLHTGAGISTSAGI 39 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a----~~ivv~tGAGiS~~sGi 39 (192)
.+.+.++.+.+++++. +..+++|=||--+++|+
T Consensus 17 ~l~~A~~i~~~M~~~~~~~~~~tifLt~aGamvsaGL 53 (299)
T PF01916_consen 17 NLGEAAEILKEMLSDDRSKQDCTIFLTFAGAMVSAGL 53 (299)
T ss_dssp HHHHHHHHHHHHHHHHS---SSEEEEEE-THHHHSTH
T ss_pred HHHHHHHHHHHHHhhcccccCCeEEEEcccccccccH
Confidence 4455667777777776 67777877777777776
No 340
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=23.08 E-value=1.4e+02 Score=23.26 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
-+..+.-+++.--.+||.||||++...
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~vp~ 107 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTCVPV 107 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeeHH
Confidence 344555555666789999999988654
No 341
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=22.80 E-value=38 Score=28.23 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=8.3
Q ss_pred CCccEEEeccCc
Q psy13183 83 GKVHYVVSQNID 94 (192)
Q Consensus 83 g~~~~viTqNiD 94 (192)
|+-+...|.+|+
T Consensus 96 g~~~thdt~~I~ 107 (253)
T COG1933 96 GLKFTHDTDDIA 107 (253)
T ss_pred cccccccccchh
Confidence 556667777776
No 342
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.69 E-value=85 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=15.7
Q ss_pred HHHHHHHHcccCCEEEEEecCC
Q psy13183 171 DINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGTSg 192 (192)
..+...++++++|++|+.|=+|
T Consensus 46 i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 46 IKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHHHTTSEEEEESSSS
T ss_pred HHHHHHhhhccCCEEEEcCCcC
Confidence 4444456678899999999544
No 343
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.68 E-value=57 Score=24.08 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.5
Q ss_pred ccccccCccccccccc
Q psy13183 114 MYVDQCNKCERQFVRK 129 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~ 129 (192)
-...+| .|++.+..+
T Consensus 68 p~~~~C-~Cg~~~~~~ 82 (124)
T PRK00762 68 PVEIEC-ECGYEGVVD 82 (124)
T ss_pred CeeEEe-eCcCccccc
Confidence 345789 999876543
No 344
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.63 E-value=77 Score=23.91 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcc--cCCEEEEEecCC
Q psy13183 168 PQKDINMGDYNSS--IADLSIIESKRG 192 (192)
Q Consensus 168 p~~~~~~a~~~~~--~~DlllviGTSg 192 (192)
++...+...++.+ .+|++|..|-+|
T Consensus 46 ~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 46 KDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcC
No 345
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.54 E-value=98 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.++|+++++++.++++++++.|-|+..
T Consensus 294 ~e~I~~~A~~~a~a~~~ii~~g~Gi~q 320 (574)
T cd02767 294 REEIEAFAAMYAKSERVVFVWGMGITQ 320 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEEecchhcc
Confidence 367999999999999999999999863
No 346
>PRK07757 acetyltransferase; Provisional
Probab=22.51 E-value=1.1e+02 Score=22.31 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=22.7
Q ss_pred EEeccCcchhhhcCCCCCceEEeCccccccccCcccc
Q psy13183 88 VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCER 124 (192)
Q Consensus 88 viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~ 124 (192)
+.|.+. .+++|.||-......+|+.... .|..|++
T Consensus 104 ~~~~~~-~~Y~k~GF~~~~~~~~~~~~~~-~~~~~~~ 138 (152)
T PRK07757 104 ALTYQP-EFFEKLGFREVDKEALPQKVWA-DCIKCPK 138 (152)
T ss_pred EEeCcH-HHHHHCCCEEcccccCChhHHh-cCccCCC
Confidence 455554 6999999965556666655543 3766653
No 347
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.33 E-value=51 Score=28.06 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=12.4
Q ss_pred ccccCccccccccchhh
Q psy13183 116 VDQCNKCERQFVRKSAT 132 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~ 132 (192)
+.+|+.|++......+.
T Consensus 26 ~~~c~~c~~~~~~~~l~ 42 (285)
T TIGR00515 26 WTKCPKCGQVLYTKELE 42 (285)
T ss_pred eeECCCCcchhhHHHHH
Confidence 67899999876655443
No 348
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.32 E-value=78 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=15.3
Q ss_pred HHHHHHHcccCCEEEEEecCC
Q psy13183 172 INMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 172 ~~~a~~~~~~~DlllviGTSg 192 (192)
.+...++.+.+|++|+.|-+|
T Consensus 49 ~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 49 AEALRRASERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHhCCCEEEECCCCC
Confidence 344445667899999999765
No 349
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=22.29 E-value=52 Score=23.13 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=11.8
Q ss_pred CcEEEEeCCccchhC
Q psy13183 23 KHVVLHTGAGISTSA 37 (192)
Q Consensus 23 ~~ivv~tGAGiS~~s 37 (192)
.+|++.+|+|+.++-
T Consensus 2 ~KIL~aCG~GvgSS~ 16 (93)
T COG3414 2 IKILAACGNGVGSST 16 (93)
T ss_pred cEEEEECCCCccHHH
Confidence 578889999988663
No 350
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=22.14 E-value=93 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
++|+++++.+.++++.+++.|-|+..
T Consensus 267 ~~I~~~A~~~a~~~~~~i~~g~g~~~ 292 (501)
T cd02766 267 EEIEELARLYGEAKPPSIRLGYGMQR 292 (501)
T ss_pred HHHHHHHHHHHhCCCcEEEecchhhh
Confidence 56889999999999999999988873
No 351
>KOG1718|consensus
Probab=22.02 E-value=75 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHH----hCCcEEEEeCCccchhCCC
Q psy13183 8 FDKKIKVLSEWID----KAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 8 ~~~~l~~l~~~i~----~a~~ivv~tGAGiS~~sGi 39 (192)
+..-++.+++.|. +-.+++|-+-||+|.++-|
T Consensus 76 l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsL 111 (198)
T KOG1718|consen 76 LYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASL 111 (198)
T ss_pred hhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHH
Confidence 3344555555554 4679999999999977643
No 352
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=21.87 E-value=1.5e+02 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.+-.+.++++..+ ..+++++|+|--+
T Consensus 19 i~~i~~~i~~~~~~-~~viiV~ggG~~a 45 (221)
T TIGR02076 19 IKEFANILRKLSDE-HKVGVVVGGGKTA 45 (221)
T ss_pred HHHHHHHHHHHHhC-CeEEEEECCcHHH
Confidence 33333444444333 6788888888644
No 353
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=21.87 E-value=3e+02 Score=24.25 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
.+.+.++.+.+++++.+..+++|=||--++||+
T Consensus 42 ~L~~A~~i~~~Ml~~~~~~ifL~~tgamvsaGl 74 (347)
T PRK02492 42 DLARAADIYDMMLQDKECAVILTLAGSLSSAGC 74 (347)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeccchHHHHH
Confidence 344555566666644444445544444444555
No 354
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=21.71 E-value=52 Score=28.13 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=11.8
Q ss_pred ccccCccccccccchh
Q psy13183 116 VDQCNKCERQFVRKSA 131 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~ 131 (192)
+.+|+.|++......+
T Consensus 27 ~~~c~~c~~~~~~~~l 42 (292)
T PRK05654 27 WTKCPSCGQVLYRKEL 42 (292)
T ss_pred eeECCCccchhhHHHH
Confidence 6789999987655443
No 355
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=21.68 E-value=2.9e+02 Score=23.97 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
.+.+.++.+.+++++.+..+++|=||--++||+
T Consensus 41 ~l~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGl 73 (316)
T PRK02301 41 RLAEAVDIYEEMLADDDVTKFFGLAGAMVPAGM 73 (316)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEcccchhHHHH
Confidence 445566667777755555556655555555665
No 356
>PF12773 DZR: Double zinc ribbon
Probab=21.67 E-value=60 Score=19.43 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=6.3
Q ss_pred CCCCcccceE
Q psy13183 151 PCRGTLHDTI 160 (192)
Q Consensus 151 ~Cgg~lrP~V 160 (192)
.||..+.++.
T Consensus 34 ~Cg~~~~~~~ 43 (50)
T PF12773_consen 34 NCGAENPPNA 43 (50)
T ss_pred CCcCCCcCCc
Confidence 7777665543
No 357
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.60 E-value=56 Score=21.25 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.6
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcc
Q psy13183 64 FDDAVPTVTHMAILELVNQGKVH 86 (192)
Q Consensus 64 ~~~~~P~~~H~~l~~l~~~g~~~ 86 (192)
|.-..|+..|..|..|+++|.+.
T Consensus 35 ~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 35 LGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HTSSSHHHHHHHHHHHHHTTSEE
T ss_pred hCCCChHHHHHHHHHHHHCcCcc
Confidence 33346999999999999988874
No 358
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.34 E-value=1.2e+02 Score=27.96 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
+.|+++++.+.++++.+++.|.|+..
T Consensus 269 ~~I~~lA~~~a~~~~~~i~~g~g~~~ 294 (565)
T cd02754 269 ADIREAARLFGEARKVMSLWTMGVNQ 294 (565)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccc
Confidence 56899999999999999999988863
No 359
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=21.25 E-value=1.9e+02 Score=23.33 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCC-ccc
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGA-GIS 34 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGA-GiS 34 (192)
.+++.+.+-.+.+.++.+...++|++.|+ |--
T Consensus 12 ~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~ 44 (239)
T cd04261 12 ASIERIKRVAERIKKRKKKGNQVVVVVSAMGGT 44 (239)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEECCCCch
Confidence 44555555566666665555555555554 433
No 360
>PRK02935 hypothetical protein; Provisional
Probab=21.14 E-value=64 Score=23.42 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=18.8
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceE
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTI 160 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~V 160 (192)
.+|++|++... .++ ..+.|. .|+.+|.=+-
T Consensus 71 V~CP~C~K~TK------mLG---rvD~CM-----~C~~PLTLd~ 100 (110)
T PRK02935 71 VICPSCEKPTK------MLG---RVDACM-----HCNQPLTLDR 100 (110)
T ss_pred eECCCCCchhh------hcc---ceeecC-----cCCCcCCcCc
Confidence 48999997642 122 234677 8988775443
No 361
>PRK05638 threonine synthase; Validated
Probab=21.08 E-value=55 Score=29.38 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.8
Q ss_pred cccCccccccc
Q psy13183 117 DQCNKCERQFV 127 (192)
Q Consensus 117 ~~C~~C~~~~~ 127 (192)
++|..|+++|+
T Consensus 2 l~C~~Cg~~~~ 12 (442)
T PRK05638 2 MKCPKCGREYN 12 (442)
T ss_pred eEeCCCCCCCC
Confidence 57888888875
No 362
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.08 E-value=65 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHhCCcEEEEeCCccchhC
Q psy13183 17 EWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 17 ~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.|.+...+-|+.||||++.|
T Consensus 182 ~~i~e~~~vpVivdAGIgt~s 202 (267)
T CHL00162 182 QIIIENAKIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHcCCCcEEEeCCcCCHH
Confidence 344444558899999999887
No 363
>KOG1185|consensus
Probab=21.02 E-value=99 Score=28.65 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 164 EHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 164 ge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
+++.|-..-..-..++++||++|++|+.
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~Gar 286 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGAR 286 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecce
Confidence 6677766555555788999999999974
No 364
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=21.01 E-value=64 Score=27.09 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=10.6
Q ss_pred CCCCCCcccceEEE
Q psy13183 149 FRPCRGTLHDTILD 162 (192)
Q Consensus 149 ~~~Cgg~lrP~Vv~ 162 (192)
|-.|+.++-|.-++
T Consensus 177 Cy~C~~~v~P~~Il 190 (278)
T PF15135_consen 177 CYGCGNPVYPSRIL 190 (278)
T ss_pred ccCCCCccCccccc
Confidence 55898888877765
No 365
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=21.01 E-value=52 Score=28.05 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=10.5
Q ss_pred ccccCccccccccchh
Q psy13183 116 VDQCNKCERQFVRKSA 131 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~ 131 (192)
+.+|+.|++.....++
T Consensus 28 w~KCp~c~~~~y~~eL 43 (294)
T COG0777 28 WTKCPSCGEMLYRKEL 43 (294)
T ss_pred eeECCCccceeeHHHH
Confidence 4578888876554443
No 366
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.98 E-value=72 Score=31.99 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=6.8
Q ss_pred CCCCCCcccc
Q psy13183 149 FRPCRGTLHD 158 (192)
Q Consensus 149 ~~~Cgg~lrP 158 (192)
||.|||.+.+
T Consensus 841 ~~~~~~~~~~ 850 (1006)
T PRK12775 841 CPACGGKLQA 850 (1006)
T ss_pred Ccccccchhh
Confidence 3499987644
No 367
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.93 E-value=1.4e+02 Score=21.88 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
|+++.+.+.++ +++++++ +||.| .|+|
T Consensus 43 Dd~~~i~~~i~---~~~~~~D-lvitt-GG~g 69 (133)
T cd00758 43 DDADSIRAALI---EASREAD-LVLTT-GGTG 69 (133)
T ss_pred CCHHHHHHHHH---HHHhcCC-EEEEC-CCCC
Confidence 56666665444 4455555 44444 3454
No 368
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=1.2e+02 Score=26.91 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=28.0
Q ss_pred cccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc-ceEEECCCCCCHHHHHHHHHHc
Q psy13183 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH-DTILDWEHNLPQKDINMGDYNS 179 (192)
Q Consensus 117 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr-P~Vv~fge~~p~~~~~~a~~~~ 179 (192)
..|..|++.+.. ..+...+|+ .||+.++ -.=+|-|.-.++++.++..+.+
T Consensus 241 ~~c~~cg~~~~~--------~~~~~~~c~-----~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~ 291 (380)
T COG1867 241 YHCSRCGEIVGS--------FREVDEKCP-----HCGGKVHLAGPLWLGPLHDEEFIEEMLEIA 291 (380)
T ss_pred EEcccccceecc--------cccccccCC-----cccccceeccCcccCcccCHHHHHHHHHHh
Confidence 468888833221 112334676 9998543 2345666666666666655544
No 369
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.74 E-value=66 Score=25.22 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=9.3
Q ss_pred ccccCcccccc
Q psy13183 116 VDQCNKCERQF 126 (192)
Q Consensus 116 ~~~C~~C~~~~ 126 (192)
.++|..||...
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 78999999765
No 370
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.67 E-value=52 Score=21.23 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=11.6
Q ss_pred CCCCCCCcccceEEEC
Q psy13183 148 GFRPCRGTLHDTILDW 163 (192)
Q Consensus 148 ~~~~Cgg~lrP~Vv~f 163 (192)
+|+.||.++.|+-.+=
T Consensus 5 HC~~CG~~Ip~~~~fC 20 (59)
T PF09889_consen 5 HCPVCGKPIPPDESFC 20 (59)
T ss_pred cCCcCCCcCCcchhhh
Confidence 3559999999875543
No 371
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=20.67 E-value=1.4e+02 Score=21.49 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH----HhCCcEEEEeCCccchhC
Q psy13183 8 FDKKIKVLSEWI----DKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 8 ~~~~l~~l~~~i----~~a~~ivv~tGAGiS~~s 37 (192)
+.+.++.+.++| ++.+.++|-+-+|+|-+.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 93 (138)
T smart00195 60 ISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSA 93 (138)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHH
Confidence 334444444444 456789999999998554
No 372
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=20.66 E-value=1.3e+02 Score=25.66 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.|+++++.+.++++.+++.|.|+.
T Consensus 231 ~~i~~la~~~~~~~~~~i~~g~~~~ 255 (374)
T cd00368 231 ETIRALAREFAAAKRAVILWGMGLT 255 (374)
T ss_pred HHHHHHHHHHHhCCCeEEEeccccc
Confidence 5688999999999999999998875
No 373
>KOG1687|consensus
Probab=20.56 E-value=60 Score=24.76 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=9.9
Q ss_pred ccCCEEEEEec
Q psy13183 180 SIADLSIIESK 190 (192)
Q Consensus 180 ~~~DlllviGT 190 (192)
+++|++||-||
T Consensus 70 RQaD~iivAGT 80 (168)
T KOG1687|consen 70 RQADLIIVAGT 80 (168)
T ss_pred ccccEEEEecc
Confidence 57999999997
No 374
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=20.40 E-value=1.4e+02 Score=24.35 Aligned_cols=34 Identities=6% Similarity=-0.123 Sum_probs=27.0
Q ss_pred cceEEECCCCCCH---HHHHHHHHHcccCCEEEEEec
Q psy13183 157 HDTILDWEHNLPQ---KDINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 157 rP~Vv~fge~~p~---~~~~~a~~~~~~~DlllviGT 190 (192)
.-+|++....++. ..++.+.+..++++.+|.+||
T Consensus 50 ~~dil~VeG~i~~~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 50 EMDVALVEGSVCLQDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CccEEEEeCCCCCCccHHHHHHHHHhccCCEEEEeec
Confidence 3477777777762 367888889999999999997
No 375
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=20.39 E-value=1.1e+02 Score=22.73 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=14.1
Q ss_pred CCcEEEEeCCccchhCCCCCCCC
Q psy13183 22 AKHVVLHTGAGISTSAGIPDFRG 44 (192)
Q Consensus 22 a~~ivv~tGAGiS~~sGipdfr~ 44 (192)
...+|++||.|-. .|-.|.
T Consensus 61 ~~~vv~ltGvG~l----~P~~R~ 79 (126)
T PF08747_consen 61 DRDVVFLTGVGSL----FPFIRS 79 (126)
T ss_pred CCcEEEEeCcchh----cchhhH
Confidence 4679999999944 665664
No 376
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=20.21 E-value=1.6e+02 Score=22.86 Aligned_cols=32 Identities=41% Similarity=0.633 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+.+.++.|.+.+++.++|||-+=+|+|-++
T Consensus 89 ~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSg 120 (180)
T COG2453 89 EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSG 120 (180)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHH
Confidence 34455566666666677899999999999553
No 377
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.15 E-value=1.3e+02 Score=22.04 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEe
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHT 29 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~t 29 (192)
.+.++++.+.|++|+.+|+.|
T Consensus 58 ~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 58 PDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp SHHHHHHHHHHHHSSEEEEEE
T ss_pred cHHHHHHHhceecCCeEEEee
Confidence 457889999999999999986
No 378
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=20.03 E-value=1.2e+02 Score=20.06 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=24.3
Q ss_pred cccceEEECCCCCCHHHHHHHHHHcccCCEEEEEe
Q psy13183 155 TLHDTILDWEHNLPQKDINMGDYNSSIADLSIIES 189 (192)
Q Consensus 155 ~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviG 189 (192)
..|..|+..+|..+...+.+|.+.+.+.|- |.+|
T Consensus 12 wY~~rvy~l~e~~Dp~d~~~A~~~a~e~d~-iplG 45 (67)
T PF12367_consen 12 WYKERVYKLDEDHDPSDREAAMEKAREGDK-IPLG 45 (67)
T ss_pred HHHHheEECCCCCCchhHHHHHHHHHhcCC-ceEE
Confidence 346677777888888888888887777655 5555
Done!