Query psy13183
Match_columns 192
No_of_seqs 205 out of 1176
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:16:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 3.1E-63 1.1E-67 420.8 15.9 192 1-192 23-217 (318)
2 3pki_A NAD-dependent deacetyla 100.0 1.6E-62 5.4E-67 420.1 14.4 192 1-192 23-217 (355)
3 3glr_A NAD-dependent deacetyla 100.0 2.9E-58 1E-62 386.3 11.2 175 11-192 10-208 (285)
4 1yc5_A NAD-dependent deacetyla 100.0 6.9E-58 2.4E-62 377.9 11.5 173 12-192 3-191 (246)
5 1ma3_A SIR2-AF2, transcription 100.0 1.6E-57 5.5E-62 377.1 13.1 177 8-192 1-194 (253)
6 1q1a_A HST2 protein; ternary c 100.0 5.3E-57 1.8E-61 380.5 13.7 181 7-192 3-222 (289)
7 3u31_A SIR2A, transcriptional 100.0 1.6E-57 5.3E-62 383.1 9.7 182 3-192 26-227 (290)
8 3riy_A NAD-dependent deacetyla 100.0 5.5E-57 1.9E-61 377.5 10.8 178 10-192 9-223 (273)
9 1m2k_A Silent information regu 100.0 1.6E-56 5.3E-61 370.4 12.1 169 13-192 3-188 (249)
10 1q14_A HST2 protein; histone d 100.0 2.5E-56 8.5E-61 385.5 13.7 185 3-192 7-230 (361)
11 4iao_A NAD-dependent histone d 100.0 6.2E-56 2.1E-60 391.6 13.3 182 11-192 173-404 (492)
12 2hjh_A NAD-dependent histone d 100.0 1.4E-55 4.7E-60 380.9 14.2 181 11-192 35-266 (354)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 2.3E-55 7.9E-60 375.2 14.6 176 11-192 30-231 (323)
14 1s5p_A NAD-dependent deacetyla 100.0 2.8E-53 9.7E-58 348.2 8.5 158 22-192 1-178 (235)
15 3cf4_G Acetyl-COA decarboxylas 78.2 1.8 6E-05 32.5 3.5 24 11-34 23-46 (170)
16 2lcq_A Putative toxin VAPC6; P 75.5 0.87 3E-05 34.1 1.0 28 116-157 132-159 (165)
17 2k5c_A Uncharacterized protein 73.9 1.8 6.1E-05 29.0 2.1 55 115-180 7-79 (95)
18 6rxn_A Rubredoxin; electron tr 71.9 2.8 9.7E-05 24.8 2.5 15 114-128 2-16 (46)
19 1e2b_A Enzyme IIB-cellobiose; 66.6 1.8 6.3E-05 30.0 1.0 14 23-36 4-17 (106)
20 4g9i_A Hydrogenase maturation 60.0 5.9 0.0002 37.0 3.4 41 148-192 180-223 (772)
21 1twf_L ABC10-alpha, DNA-direct 59.2 6.3 0.00022 25.4 2.5 26 116-154 28-53 (70)
22 2kdx_A HYPA, hydrogenase/ureas 58.9 4.4 0.00015 28.6 1.8 33 109-155 66-99 (119)
23 4ayb_P DNA-directed RNA polyme 57.4 6.1 0.00021 23.5 1.9 29 116-154 3-31 (48)
24 3fxa_A SIS domain protein; str 56.8 7.6 0.00026 29.2 3.0 99 10-111 32-144 (201)
25 3a43_A HYPD, hydrogenase nicke 55.9 4.7 0.00016 29.4 1.6 24 107-130 61-84 (139)
26 1e8j_A Rubredoxin; iron-sulfur 55.6 8.7 0.0003 23.2 2.5 15 115-129 2-16 (52)
27 3eya_A Pyruvate dehydrogenase 54.5 11 0.00037 33.3 4.0 26 9-34 188-213 (549)
28 2v3b_B Rubredoxin 2, rubredoxi 54.5 8.3 0.00028 23.6 2.3 15 115-129 2-16 (55)
29 2yva_A DNAA initiator-associat 53.9 12 0.00043 27.7 3.8 29 7-36 26-54 (196)
30 2vbf_A Branched-chain alpha-ke 53.2 11 0.00039 33.3 3.9 37 9-45 215-263 (570)
31 1tvm_A PTS system, galactitol- 52.9 4 0.00014 28.5 0.8 15 23-37 22-36 (113)
32 3sho_A Transcriptional regulat 52.7 15 0.0005 27.1 4.0 89 10-99 27-130 (187)
33 2vbi_A Pyruvate decarboxylase; 50.4 17 0.00059 32.0 4.7 27 8-34 195-221 (566)
34 2ywx_A Phosphoribosylaminoimid 49.9 7.7 0.00026 29.1 1.9 25 12-36 40-64 (157)
35 2wvg_A PDC, pyruvate decarboxy 49.2 17 0.00058 32.1 4.4 27 8-34 195-221 (568)
36 1ovm_A Indole-3-pyruvate decar 49.2 14 0.00047 32.5 3.8 28 7-34 194-221 (552)
37 2kn9_A Rubredoxin; metalloprot 48.9 12 0.0004 24.9 2.5 16 114-129 25-40 (81)
38 2xhz_A KDSD, YRBH, arabinose 5 48.9 8.7 0.0003 28.2 2.2 90 10-99 36-139 (183)
39 1ytl_A Acetyl-COA decarboxylas 48.4 11 0.00037 28.5 2.6 22 12-34 24-46 (174)
40 3nbm_A PTS system, lactose-spe 47.6 6.9 0.00024 27.2 1.3 16 22-37 6-21 (108)
41 1x92_A APC5045, phosphoheptose 47.2 20 0.0007 26.6 4.1 30 7-37 30-59 (199)
42 3vth_A Hydrogenase maturation 46.7 13 0.00045 34.6 3.4 40 148-191 185-224 (761)
43 1ybh_A Acetolactate synthase, 46.7 17 0.00057 32.4 4.0 35 10-44 202-246 (590)
44 4rxn_A Rubredoxin; electron tr 46.5 26 0.00089 21.3 3.7 15 115-129 2-16 (54)
45 3cf4_G Acetyl-COA decarboxylas 46.5 6.7 0.00023 29.2 1.2 15 177-191 103-117 (170)
46 2xig_A Ferric uptake regulatio 46.3 17 0.00059 26.3 3.4 53 66-129 58-112 (150)
47 3brc_A Conserved protein of un 46.3 14 0.00048 27.3 2.8 24 10-33 24-47 (156)
48 3cvj_A Putative phosphoheptose 46.1 24 0.00081 27.4 4.4 25 71-95 123-147 (243)
49 2nxw_A Phenyl-3-pyruvate decar 45.6 17 0.00059 32.1 3.9 28 7-34 207-234 (565)
50 4feg_A Pyruvate oxidase; carba 45.5 17 0.00059 32.4 3.9 26 9-34 199-224 (603)
51 2vk8_A Pyruvate decarboxylase 45.4 18 0.0006 31.9 3.9 27 8-34 197-223 (563)
52 1vkr_A Mannitol-specific PTS s 44.8 5.9 0.0002 28.2 0.6 16 22-37 13-28 (125)
53 1ozh_A ALS, acetolactate synth 44.4 19 0.00067 31.8 4.1 25 10-34 195-219 (566)
54 1nri_A Hypothetical protein HI 44.4 17 0.00058 29.6 3.4 30 8-38 57-86 (306)
55 1m3s_A Hypothetical protein YC 44.0 14 0.00049 27.1 2.7 85 10-99 25-122 (186)
56 1lko_A Rubrerythrin all-iron(I 43.5 9 0.00031 29.3 1.5 15 114-128 153-167 (191)
57 1t9b_A Acetolactate synthase, 43.4 23 0.0008 32.2 4.5 26 9-34 276-301 (677)
58 2q28_A Oxalyl-COA decarboxylas 43.4 15 0.00051 32.4 3.1 26 9-34 198-223 (564)
59 1dx8_A Rubredoxin; electron tr 42.7 15 0.00051 23.6 2.2 17 113-129 4-20 (70)
60 2c31_A Oxalyl-COA decarboxylas 42.1 16 0.00055 32.3 3.1 26 9-34 200-225 (568)
61 1jeo_A MJ1247, hypothetical pr 41.3 15 0.00052 26.8 2.5 94 10-112 28-134 (180)
62 2l2q_A PTS system, cellobiose- 40.9 9.2 0.00031 26.3 1.1 13 24-36 6-18 (109)
63 3pwf_A Rubrerythrin; non heme 40.5 11 0.00037 28.4 1.5 13 115-127 137-149 (170)
64 1ytl_A Acetyl-COA decarboxylas 40.4 12 0.0004 28.3 1.7 12 180-191 107-118 (174)
65 3czc_A RMPB; alpha/beta sandwi 40.2 7.5 0.00026 26.8 0.5 15 23-37 19-33 (110)
66 1twd_A Copper homeostasis prot 40.0 15 0.0005 29.7 2.3 28 9-36 155-182 (256)
67 1v5e_A Pyruvate oxidase; oxido 39.9 24 0.00081 31.4 3.9 24 10-33 193-216 (590)
68 1vim_A Hypothetical protein AF 39.7 18 0.00061 27.2 2.7 85 10-99 35-132 (200)
69 2gmg_A Hypothetical protein PF 39.6 20 0.0007 24.9 2.7 13 114-126 65-77 (105)
70 1tk9_A Phosphoheptose isomeras 39.2 27 0.00093 25.5 3.6 30 70-99 124-153 (188)
71 2iht_A Carboxyethylarginine sy 38.9 19 0.00065 31.8 3.1 26 9-34 203-228 (573)
72 2uz1_A Benzaldehyde lyase; thi 38.7 19 0.00066 31.7 3.1 26 9-34 191-216 (563)
73 2epq_A POZ-, at HOOK-, and zin 38.3 24 0.00082 18.9 2.5 21 110-130 4-24 (45)
74 1wig_A KIAA1808 protein; LIM d 38.2 17 0.00059 22.8 2.0 42 112-159 1-44 (73)
75 2pan_A Glyoxylate carboligase; 38.2 20 0.00068 32.0 3.1 26 9-34 213-238 (616)
76 2i2w_A Phosphoheptose isomeras 38.0 31 0.001 26.1 3.8 26 71-96 146-171 (212)
77 2xbl_A Phosphoheptose isomeras 37.9 35 0.0012 25.1 4.1 29 71-99 131-159 (198)
78 1mzb_A Ferric uptake regulatio 37.8 27 0.00091 24.7 3.2 53 66-129 50-104 (136)
79 3dnf_A ISPH, LYTB, 4-hydroxy-3 37.2 25 0.00087 28.9 3.3 33 158-190 184-218 (297)
80 3eyy_A Putative iron uptake re 37.1 18 0.00063 26.0 2.3 53 66-129 49-103 (145)
81 3fkj_A Putative phosphosugar i 37.0 25 0.00087 29.1 3.4 93 7-100 22-133 (347)
82 3mwm_A ZUR, putative metal upt 36.8 26 0.00089 25.0 3.1 56 66-129 45-100 (139)
83 1yk4_A Rubredoxin, RD; electro 36.5 21 0.00071 21.4 2.1 14 116-129 2-15 (52)
84 3rgo_A Protein-tyrosine phosph 36.0 43 0.0015 23.5 4.2 31 6-36 73-103 (157)
85 2pgn_A Cyclohexane-1,2-dione h 34.7 23 0.00078 31.5 2.9 25 10-34 193-217 (589)
86 1q6z_A BFD, BFDC, benzoylforma 34.3 21 0.0007 31.2 2.5 25 10-34 188-212 (528)
87 1s24_A Rubredoxin 2; electron 34.2 20 0.0007 24.0 1.9 16 114-129 33-48 (87)
88 2x7j_A 2-succinyl-5-enolpyruvy 34.1 20 0.00069 32.0 2.5 35 10-44 231-276 (604)
89 1nyp_A Pinch protein; LIM doma 34.0 25 0.00084 21.2 2.2 42 112-159 1-44 (66)
90 2w57_A Ferric uptake regulatio 33.6 37 0.0013 24.5 3.5 53 66-129 49-103 (150)
91 3emu_A Leucine rich repeat and 33.5 32 0.0011 24.9 3.1 33 7-39 68-104 (161)
92 2j16_A SDP-1, tyrosine-protein 32.7 35 0.0012 25.6 3.3 29 9-37 104-132 (182)
93 3s4e_A Dual specificity protei 32.7 38 0.0013 23.7 3.4 31 8-38 67-97 (144)
94 3nwy_A Uridylate kinase; allos 31.9 56 0.0019 26.4 4.6 28 5-32 71-98 (281)
95 3szu_A ISPH, 4-hydroxy-3-methy 31.0 30 0.001 28.9 2.8 20 171-190 215-234 (328)
96 1x61_A Thyroid receptor intera 30.9 29 0.00098 21.3 2.2 43 112-159 1-46 (72)
97 1aoc_A Coagulogen; coagulation 30.5 18 0.00063 26.2 1.3 36 6-44 24-59 (175)
98 2a3n_A Putative glucosamine-fr 30.5 29 0.00099 28.7 2.7 100 9-112 39-155 (355)
99 3fau_A NEDD4-binding protein 2 29.8 21 0.00074 23.0 1.5 22 22-43 34-55 (82)
100 2o03_A Probable zinc uptake re 29.7 48 0.0016 23.2 3.4 52 66-128 42-95 (131)
101 2d9i_A NEDD4-binding protein 2 29.5 35 0.0012 22.7 2.6 18 23-40 43-60 (96)
102 2bdq_A Copper homeostasis prot 29.4 26 0.00089 27.7 2.1 29 9-37 162-191 (224)
103 3lq1_A 2-succinyl-5-enolpyruvy 28.7 37 0.0013 30.0 3.2 26 9-35 211-236 (578)
104 3eua_A Putative fructose-amino 27.8 35 0.0012 28.0 2.7 91 9-100 10-118 (329)
105 3ezz_A Dual specificity protei 27.6 56 0.0019 22.7 3.5 31 7-37 66-96 (144)
106 3trj_A Phosphoheptose isomeras 27.6 27 0.00093 26.4 1.9 30 70-99 128-157 (201)
107 2img_A Dual specificity protei 27.5 82 0.0028 21.7 4.4 30 7-36 74-103 (151)
108 2bru_C NAD(P) transhydrogenase 27.0 35 0.0012 26.0 2.3 28 10-37 18-45 (186)
109 3etn_A Putative phosphosugar i 26.9 36 0.0012 26.0 2.5 90 10-100 42-152 (220)
110 2a1f_A Uridylate kinase; PYRH, 26.6 71 0.0024 24.8 4.3 28 6-33 31-58 (247)
111 1ybd_A Uridylate kinase; alpha 26.4 75 0.0026 24.4 4.4 27 6-32 30-56 (239)
112 1xmp_A PURE, phosphoribosylami 26.3 34 0.0012 25.9 2.1 25 12-36 52-79 (170)
113 3ek6_A Uridylate kinase; UMPK 26.2 83 0.0028 24.6 4.6 27 6-32 32-58 (243)
114 3hww_A 2-succinyl-5-enolpyruvy 26.1 36 0.0012 30.0 2.6 18 174-191 271-288 (556)
115 1zzw_A Dual specificity protei 26.0 98 0.0033 21.5 4.6 30 8-37 69-98 (149)
116 2fe3_A Peroxide operon regulat 25.6 39 0.0013 24.1 2.4 52 66-128 53-105 (145)
117 3utn_X Thiosulfate sulfurtrans 25.5 30 0.001 28.6 1.9 45 6-50 255-311 (327)
118 1z9d_A Uridylate kinase, UK, U 25.4 77 0.0026 24.7 4.3 27 6-32 30-56 (252)
119 4erc_A Dual specificity protei 25.2 91 0.0031 21.5 4.3 31 6-36 72-102 (150)
120 1vd4_A Transcription initiatio 25.1 25 0.00085 20.8 1.0 20 111-130 9-28 (62)
121 2hcm_A Dual specificity protei 25.1 1E+02 0.0035 21.9 4.7 29 9-37 76-104 (164)
122 1pno_A NAD(P) transhydrogenase 25.1 40 0.0014 25.5 2.3 27 11-37 12-38 (180)
123 2jne_A Hypothetical protein YF 24.9 23 0.00077 24.4 0.8 12 117-128 33-44 (101)
124 4b4k_A N5-carboxyaminoimidazol 24.8 32 0.0011 26.3 1.7 24 13-36 64-90 (181)
125 4a7w_A Uridylate kinase; trans 24.8 91 0.0031 24.2 4.6 28 5-32 29-56 (240)
126 2nt2_A Protein phosphatase sli 24.8 69 0.0024 22.3 3.6 30 9-38 68-97 (145)
127 3ot6_A Enoyl-COA hydratase/iso 24.6 73 0.0025 24.6 4.0 32 8-39 33-64 (232)
128 2a26_A Calcyclin-binding prote 24.3 84 0.0029 18.6 3.3 21 4-24 5-25 (50)
129 2ako_A Glutamate 5-kinase; str 24.3 72 0.0025 24.7 3.9 29 5-34 21-49 (251)
130 1d4o_A NADP(H) transhydrogenas 24.1 43 0.0015 25.4 2.4 27 11-37 11-37 (184)
131 2vkc_A NEDD4-binding protein 2 24.0 55 0.0019 23.3 2.9 19 23-41 88-106 (135)
132 1x4k_A Skeletal muscle LIM-pro 23.9 43 0.0015 20.4 2.0 43 112-159 1-46 (72)
133 1dl6_A Transcription factor II 23.8 28 0.00096 21.2 1.1 36 117-164 12-48 (58)
134 2d8z_A Four and A half LIM dom 23.8 41 0.0014 20.4 1.9 42 112-159 1-44 (70)
135 2esb_A Dual specificity protei 23.8 64 0.0022 23.9 3.4 29 9-37 84-112 (188)
136 3oow_A Phosphoribosylaminoimid 23.4 35 0.0012 25.7 1.7 24 13-36 47-73 (166)
137 2oud_A Dual specificity protei 23.0 99 0.0034 22.5 4.3 30 8-37 73-102 (177)
138 1q6z_A BFD, BFDC, benzoylforma 23.0 45 0.0015 29.0 2.6 18 174-191 259-276 (528)
139 2q28_A Oxalyl-COA decarboxylas 23.0 29 0.00099 30.5 1.4 16 176-191 265-280 (564)
140 1u11_A PURE (N5-carboxyaminoim 22.8 43 0.0015 25.6 2.1 25 12-36 62-89 (182)
141 1yuz_A Nigerythrin; rubrythrin 22.8 41 0.0014 25.8 2.1 14 114-127 169-182 (202)
142 3h0g_L DNA-directed RNA polyme 22.7 61 0.0021 20.3 2.5 28 116-156 21-48 (63)
143 2gnr_A Conserved hypothetical 22.7 24 0.00081 25.8 0.7 15 112-126 43-57 (145)
144 3rg8_A Phosphoribosylaminoimid 22.6 74 0.0025 23.7 3.4 14 23-36 58-71 (159)
145 4ets_A Ferric uptake regulatio 22.6 31 0.0011 25.4 1.3 53 66-129 66-120 (162)
146 2hxp_A Dual specificity protei 22.6 68 0.0023 22.8 3.2 26 12-37 75-100 (155)
147 2jjx_A Uridylate kinase, UMP k 22.6 93 0.0032 24.3 4.3 29 5-33 34-62 (255)
148 3mvn_A UDP-N-acetylmuramate:L- 22.2 79 0.0027 22.8 3.5 32 159-192 118-149 (163)
149 1y0n_A Hypothetical UPF0270 pr 22.2 57 0.0019 21.4 2.4 25 5-29 33-57 (78)
150 3eya_A Pyruvate dehydrogenase 22.2 42 0.0014 29.4 2.3 17 175-191 259-275 (549)
151 1rxd_A Protein tyrosine phosph 22.1 1.2E+02 0.0042 20.9 4.5 32 5-36 77-110 (159)
152 2j4j_A Uridylate kinase; trans 22.1 1E+02 0.0035 23.4 4.4 27 7-33 19-45 (226)
153 3cm3_A Late protein H1, dual s 22.1 96 0.0033 22.4 4.1 30 8-37 94-123 (176)
154 2c31_A Oxalyl-COA decarboxylas 22.1 31 0.0011 30.4 1.4 16 176-191 267-282 (568)
155 2vk8_A Pyruvate decarboxylase 21.9 46 0.0016 29.2 2.5 17 175-191 272-288 (563)
156 4feg_A Pyruvate oxidase; carba 21.8 43 0.0015 29.8 2.3 17 175-191 270-286 (603)
157 2cur_A Skeletal muscle LIM-pro 21.8 52 0.0018 19.9 2.1 42 112-159 1-44 (69)
158 4fzw_A 2,3-dehydroadipyl-COA h 21.6 1E+02 0.0034 24.2 4.3 17 23-39 50-66 (258)
159 1ovm_A Indole-3-pyruvate decar 21.2 48 0.0016 29.0 2.5 18 174-191 269-286 (552)
160 2epr_A POZ-, at HOOK-, and zin 21.1 89 0.003 16.8 2.9 18 113-130 9-26 (48)
161 3lfh_A Manxa, phosphotransfera 21.1 1.1E+02 0.0039 21.8 4.1 29 3-31 41-70 (144)
162 2elm_A Zinc finger protein 406 20.9 34 0.0012 17.4 1.0 19 111-129 4-22 (37)
163 3ttc_A HYPF, transcriptional r 20.9 47 0.0016 30.4 2.4 41 148-191 91-133 (657)
164 2g6z_A Dual specificity protei 20.8 1E+02 0.0034 23.6 4.0 68 8-81 69-142 (211)
165 2r0b_A Serine/threonine/tyrosi 20.8 1.1E+02 0.0038 21.3 4.1 29 9-37 77-105 (154)
166 3trh_A Phosphoribosylaminoimid 20.5 74 0.0025 23.9 3.0 15 22-36 60-74 (169)
167 4grd_A N5-CAIR mutase, phospho 20.4 47 0.0016 25.1 1.9 24 13-36 54-80 (173)
168 2fsv_C NAD(P) transhydrogenase 20.4 55 0.0019 25.3 2.3 27 11-37 35-61 (203)
169 1wyh_A SLIM 2, skeletal muscle 20.4 78 0.0027 19.1 2.8 42 113-159 2-46 (72)
170 2nxw_A Phenyl-3-pyruvate decar 20.3 52 0.0018 28.9 2.5 17 175-191 283-299 (565)
171 1o4v_A Phosphoribosylaminoimid 20.1 52 0.0018 25.1 2.1 25 12-36 54-81 (183)
172 2ytn_A Zinc finger protein 347 20.1 1.1E+02 0.0037 16.0 3.3 21 110-130 6-26 (46)
173 1y5e_A Molybdenum cofactor bio 20.1 68 0.0023 23.5 2.8 22 171-192 60-83 (169)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-63 Score=420.77 Aligned_cols=192 Identities=49% Similarity=0.914 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHH
Q psy13183 1 TFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELV 80 (192)
Q Consensus 1 ~~d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~ 80 (192)
+||+++++++++++|+++|++|++|||+||||||++|||||||+++|+|+..++..+|++.|.|.+++||.+|++|++|+
T Consensus 23 ~~d~p~~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~~p~~~~~f~~a~Pn~~H~aLa~Le 102 (318)
T 3k35_A 23 IFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLE 102 (318)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTCCCCCSSCTTTCCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccCCHHHHHHhhhCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999877788899999999999999999999999
Q ss_pred HcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCC---CCCCCCCCccc
Q psy13183 81 NQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPY---RGFRPCRGTLH 157 (192)
Q Consensus 81 ~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~---~~~~~Cgg~lr 157 (192)
+.|++.+||||||||||+|||++.++|+|+|||+++.+|+.|++.|.++.........+.++.|+. ..|+.|||.||
T Consensus 103 ~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~p~~~~C~~~~~~~c~~CgG~LR 182 (318)
T 3k35_A 103 RVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELR 182 (318)
T ss_dssp HTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSCEEEEECCC--------CCCEEE
T ss_pred HcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccCCCCCcCcccccccccCcCCeeC
Confidence 999999999999999999999988899999999999999999999887654432222223345642 45678999999
Q ss_pred ceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 158 DTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 158 P~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|+||||||++|.+.+++|.+++++||++||||||+
T Consensus 183 PdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL 217 (318)
T 3k35_A 183 DTILDWEDSLPDRDLALADEASRNADLSITLGTSL 217 (318)
T ss_dssp ECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCC
T ss_pred CCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCC
Confidence 99999999999999999999999999999999996
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=1.6e-62 Score=420.12 Aligned_cols=192 Identities=49% Similarity=0.914 Sum_probs=173.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccccCCCCCHHHHHHHHHH
Q psy13183 1 TFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELV 80 (192)
Q Consensus 1 ~~d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~~~~~P~~~H~~l~~l~ 80 (192)
+||+++++++++++|+++|++|++|||+||||||++|||||||+++|+|+...++.+|++.|.|.+++||.+|++|++|+
T Consensus 23 ~~D~p~~l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~~~~p~~~~~f~~a~Pn~~H~aLa~Le 102 (355)
T 3pki_A 23 IFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLE 102 (355)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHTTCCCCCSSCTTTCCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchhhccCChHHHHHHhhCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999877778899999999999999999999999
Q ss_pred HcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCC---CCCCCCCCccc
Q psy13183 81 NQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPY---RGFRPCRGTLH 157 (192)
Q Consensus 81 ~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~---~~~~~Cgg~lr 157 (192)
+.|++.+||||||||||++||++.++|+|+|||++..+|+.|++.|.++.....+...+.++.|+. ..|+.|||.||
T Consensus 103 ~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~CgG~LR 182 (355)
T 3pki_A 103 RVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELR 182 (355)
T ss_dssp HTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSCEEEEECCCCCBTTBCCCCCEEE
T ss_pred HcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccCCCCCccccccccccccCCCccC
Confidence 999999999999999999999987899999999999999999999887654432222222345642 45779999999
Q ss_pred ceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 158 DTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 158 P~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|+||||||++|.+.+++|.+++++|||+||||||+
T Consensus 183 PdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL 217 (355)
T 3pki_A 183 DTILDWEDSLPDRDLALADEASRNADLSITLGTSL 217 (355)
T ss_dssp ECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCC
T ss_pred CCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence 99999999999999999999999999999999996
No 3
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=2.9e-58 Score=386.27 Aligned_cols=175 Identities=31% Similarity=0.493 Sum_probs=151.5
Q ss_pred HHHHHHHHHHh--CCcEEEEeCCccchhCCCCCCCCCC-Ccccccc---------------cCCCCcccccc------cC
Q psy13183 11 KIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF------DD 66 (192)
Q Consensus 11 ~l~~l~~~i~~--a~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~---------------~~~~p~~~~~~------~~ 66 (192)
.|++++++|++ |++|||+||||||++|||||||+++ |+|+..+ |..+|+.+|.| .+
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~~~~ 89 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGN 89 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhhhcc
Confidence 58999999997 8999999999999999999999985 9997421 23455555544 36
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCC
Q psy13183 67 AVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPY 146 (192)
Q Consensus 67 ~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~ 146 (192)
++||.+|++|++|++.|++.+||||||||||++||+++++|+|+|||+++.+|+.|++.|+.+.....+. ....|+|+
T Consensus 90 a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-~~~~P~C~- 167 (285)
T 3glr_A 90 YKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-ADRVPRCP- 167 (285)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCT-
T ss_pred CCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-cCCCCCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999988766544332 23467887
Q ss_pred CCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 147 RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 147 ~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.|||.|||+||||||++|.+.+. +.+++++|||+||||||+
T Consensus 168 ----~Cgg~lrP~IV~FGE~lp~~~~~-~~~~~~~aDlllviGTSl 208 (285)
T 3glr_A 168 ----VCTGVVKPDIVFFGEPLPQRFLL-HVVDFPMADLLLILGTSL 208 (285)
T ss_dssp ----TTCCBEEEEECCTTSBCCGGGGG-HHHHHHHCSEEEEESCCC
T ss_pred ----CCCCccCCcEEEeCCcCCHHHHH-HHHHHhcCCEEEEeCCCC
Confidence 99999999999999999998774 577889999999999996
No 4
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=6.9e-58 Score=377.91 Aligned_cols=173 Identities=32% Similarity=0.513 Sum_probs=144.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccc--------cCCCCcccccc--------cCCCCCHHHHH
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK--------KGIKPKVNISF--------DDAVPTVTHMA 75 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~--------~~~~p~~~~~~--------~~~~P~~~H~~ 75 (192)
+++++++|++|++|||+||||||++|||||||+++|+|+... |..+|+.+|.| .+++||.+|++
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~Pn~~H~~ 82 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVL 82 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-----------CCTTBHHHHHHCHHHHHHHHHHHTGGGGGCCCCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccccCCCceecHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 678999999999999999999999999999999999998532 23456655544 47999999999
Q ss_pred HHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 76 ILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 76 l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
|++|++.|++++||||||||||+|||+ ++|+|+|||+.+.+|+.|++.|+.+.....+.. ...|+|+ .|||.
T Consensus 83 La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~Cgg~ 154 (246)
T 1yc5_A 83 LAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLES-SDVPLCD-----DCNSL 154 (246)
T ss_dssp HHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTTT-CSSCBCT-----TTCCB
T ss_pred HHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhcc-CCCCCCC-----CCCCc
Confidence 999999999999999999999999997 689999999999999999998877665443322 2467787 99999
Q ss_pred ccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 156 LHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 156 lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|||+||||||++|++.++++.+++++||++||||||+
T Consensus 155 lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl 191 (246)
T 1yc5_A 155 IRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSL 191 (246)
T ss_dssp EEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred cCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCC
Confidence 9999999999999999999999999999999999995
No 5
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.6e-57 Score=377.11 Aligned_cols=177 Identities=30% Similarity=0.477 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCccccccc-------CCCCCH
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISFD-------DAVPTV 71 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~~-------~~~P~~ 71 (192)
|++++++++++|++|++|||+||||||++|||||||+++|+|+.. .|..+|+.+|.|. .++||.
T Consensus 1 m~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~Pn~ 80 (253)
T 1ma3_A 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNP 80 (253)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHHHHTCCCCH
T ss_pred ChHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccccCChhheecHHHHhcCHHHHHHHHHHHHHhccCCCCH
Confidence 356799999999999999999999999999999999999999742 2456777777651 399999
Q ss_pred HHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCC
Q psy13183 72 THMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRP 151 (192)
Q Consensus 72 ~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 151 (192)
+|++|++|++.|++.+||||||||||++||+ ++|+|+|||+...+|+.|++.|+.+.....+.. ...|+|+ .
T Consensus 81 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~ 152 (253)
T 1ma3_A 81 AHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNK-GEIPRCR-----K 152 (253)
T ss_dssp HHHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHHT-TCCCCCT-----T
T ss_pred HHHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhcc-CCCCCCC-----C
Confidence 9999999999999999999999999999997 699999999999999999999877665443322 2357887 9
Q ss_pred CCC-cccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 152 CRG-TLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 152 Cgg-~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
||| .|||+||||||++|++.++++.+++++||++||||||+
T Consensus 153 Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl 194 (253)
T 1ma3_A 153 CGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSL 194 (253)
T ss_dssp TCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCc
Confidence 999 99999999999999999999999999999999999995
No 6
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=5.3e-57 Score=380.45 Aligned_cols=181 Identities=21% Similarity=0.359 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEeCCccchhCCCCCCCCCC-Ccccccc---------------cCCCCcccccc----
Q psy13183 7 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF---- 64 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~--a~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~---------------~~~~p~~~~~~---- 64 (192)
+|++++++++++|++ |++|||+||||||++|||||||+++ |+|+..+ |..+|+.+|.|
T Consensus 3 ~~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 3 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp CTHHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 456789999999999 9999999999999999999999995 9997522 22345555544
Q ss_pred --cCCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCC--CC
Q psy13183 65 --DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQK--NL 140 (192)
Q Consensus 65 --~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~--~~ 140 (192)
.+++||.+|++|++|++.|++.+||||||||||++||+++++|+|+||++...+|+.|++.|+.+.....+... ..
T Consensus 83 ~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 162 (289)
T 1q1a_A 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKD 162 (289)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCS
T ss_pred hhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCC
Confidence 37999999999999999999999999999999999999888999999999999999999998876655444321 23
Q ss_pred CCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHH-------------HHHcccCCEEEEEecCC
Q psy13183 141 NIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMG-------------DYNSSIADLSIIESKRG 192 (192)
Q Consensus 141 ~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a-------------~~~~~~~DlllviGTSg 192 (192)
.|+|+ .|||.|||+||||||++|++.++.+ .+.+++||++||||||+
T Consensus 163 ~P~C~-----~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl 222 (289)
T 1q1a_A 163 FVKCD-----VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSL 222 (289)
T ss_dssp CCBCT-----TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCC
T ss_pred CccCC-----CCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCC
Confidence 57777 9999999999999999998765543 24578999999999995
No 7
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=1.6e-57 Score=383.07 Aligned_cols=182 Identities=25% Similarity=0.365 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCC-CCCccccc---------ccCCCCcccccc-------c
Q psy13183 3 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG-PNGVWTLE---------KKGIKPKVNISF-------D 65 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~-~~g~~~~~---------~~~~~p~~~~~~-------~ 65 (192)
+.+.+.++++++|+++|++|++|||+||||||++|||||||+ .+|+|+.. .|..+|+.+|.| .
T Consensus 26 ~~~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~~~p~~~~~~~~f~~~p~~~w~~~~~~~~~~ 105 (290)
T 3u31_A 26 LKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSDY 105 (290)
T ss_dssp -CCCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGGSCHHHHTBHHHHHHCHHHHHHHHHHHHHHS
T ss_pred cCcchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhcCCHHHhhCHHhhhhCHHHHHHHHHHHhhhc
Confidence 334444567999999999999999999999999999999999 69999742 234577777765 4
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhh---ccCCCCCC
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNS---VGQKNLNI 142 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~---~~~~~~~~ 142 (192)
+++||.+|++|++|++.|++++||||||||||++||+ ++|+|+|||++..+|+.|++.|+.+..... .......|
T Consensus 106 ~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P 183 (290)
T 3u31_A 106 EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPP 183 (290)
T ss_dssp CCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGGGSTTSSTTTSSSC
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhhhcccccccccCCC
Confidence 7999999999999999999999999999999999997 699999999999999999998876554321 00111233
Q ss_pred CCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 143 PCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 143 ~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.|+ |||.|||+||||||++|++.+++|.+++++|||+||||||+
T Consensus 184 -----~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl 227 (290)
T 3u31_A 184 -----ECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSS 227 (290)
T ss_dssp -----BCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred -----CCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCC
Confidence 456 99999999999999999999999999999999999999995
No 8
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=5.5e-57 Score=377.50 Aligned_cols=178 Identities=28% Similarity=0.470 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc--------cCCCCCHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVT 72 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~--------~~~~P~~~ 72 (192)
+++++++++|++|++|||+|||||||+|||||||+++|+|+.. .|..+|+.+|.| .+++||.+
T Consensus 9 ~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~~~~~~~Pn~~ 88 (273)
T 3riy_A 9 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAG 88 (273)
T ss_dssp CCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhhCChhhcCCHHHHhhCHHHHHHHHHHHHHHhhhCCCCHH
Confidence 3578999999999999999999999999999999999999742 244677777765 47899999
Q ss_pred HHHHHHHHH----cCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchh--hhhcc----------
Q psy13183 73 HMAILELVN----QGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSA--TNSVG---------- 136 (192)
Q Consensus 73 H~~l~~l~~----~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~--~~~~~---------- 136 (192)
|++|++|++ .|++++||||||||||+|||+ ++|+|+|||++..+|+.|++.|..... ...+.
T Consensus 89 H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~~~~~~ 166 (273)
T 3riy_A 89 HRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ 166 (273)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCCSTTCC
T ss_pred HHHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCCccccc
Confidence 999999995 599999999999999999997 699999999999999999998754321 00000
Q ss_pred ----CCCCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 137 ----QKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 137 ----~~~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.....|+|+ .+.|||.|||+||||||++|++.+++|.+++++|||+||||||+
T Consensus 167 ~~~~~~~~~P~C~---~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl 223 (273)
T 3riy_A 167 DASIPVEKLPRCE---EAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSS 223 (273)
T ss_dssp CCCCCGGGSCBCC---GGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred ccccccCCCCCCC---CCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence 001235551 03899999999999999999999999999999999999999996
No 9
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=1.6e-56 Score=370.42 Aligned_cols=169 Identities=29% Similarity=0.462 Sum_probs=150.2
Q ss_pred HHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc--------cCCCCCHHHHH
Q psy13183 13 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTHMA 75 (192)
Q Consensus 13 ~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~--------~~~~P~~~H~~ 75 (192)
++++++|++|++|||+||||||++|||||||+++|+|+.. .|..+|+.+|.| .+++||.+|++
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~ 82 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQA 82 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccCCCHHhcccHHHHhcCHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 6789999999999999999999999999999999999742 234567777765 37999999999
Q ss_pred HHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCc
Q psy13183 76 ILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155 (192)
Q Consensus 76 l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~ 155 (192)
|++|++.|++++||||||||||++||. ++|+|+||++.+.+|+.|++.|+.+.. +. ....|+|+ .|||.
T Consensus 83 La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~---~~-~~~~p~C~-----~Cgg~ 151 (249)
T 1m2k_A 83 FAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESA---PK-IPPLPKCD-----KCGSL 151 (249)
T ss_dssp HHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSC---CC-SSSCCBCS-----SSSSB
T ss_pred HHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhh---cc-CCCCCCCC-----CCCCC
Confidence 999999999999999999999999995 799999999999999999998876543 11 12357777 99999
Q ss_pred ccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 156 LHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 156 lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
|||+||||||++|++.++++.+++++||++||||||+
T Consensus 152 lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl 188 (249)
T 1m2k_A 152 LRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSA 188 (249)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred cCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCC
Confidence 9999999999999999999999999999999999995
No 10
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=2.5e-56 Score=385.54 Aligned_cols=185 Identities=21% Similarity=0.347 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHHHHHHHHh--CCcEEEEeCCccchhCCCCCCCCCC-Ccccccc---------------cCCCCcccccc
Q psy13183 3 DSKEDFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF 64 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i~~--a~~ivv~tGAGiS~~sGipdfr~~~-g~~~~~~---------------~~~~p~~~~~~ 64 (192)
.++.+++.++++|+++|++ |++|||+||||||++|||||||+++ |+|+... |..+|+.+|.|
T Consensus 7 ~~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~~ 86 (361)
T 1q14_A 7 VSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTL 86 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHHH
Confidence 4566788899999999999 9999999999999999999999995 9997522 22345545544
Q ss_pred ------cCCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCC
Q psy13183 65 ------DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQK 138 (192)
Q Consensus 65 ------~~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~ 138 (192)
..++||.+|++|++|++.|++++||||||||||++||++.++|+|+||+++.++|+.|++.|+.+.....+...
T Consensus 87 ~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 166 (361)
T 1q14_A 87 AKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEH 166 (361)
T ss_dssp HTTTSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTTSS
T ss_pred HHHHhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHhhc
Confidence 36899999999999999999999999999999999999888999999999999999999998876655444322
Q ss_pred --CCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHHH-------------HcccCCEEEEEecCC
Q psy13183 139 --NLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDY-------------NSSIADLSIIESKRG 192 (192)
Q Consensus 139 --~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~-------------~~~~~DlllviGTSg 192 (192)
...|+|+ .|||.|||+||||||++|...++.+.+ .+.+|||+||||||+
T Consensus 167 ~~~~~P~Cp-----~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl 230 (361)
T 1q14_A 167 PIKDFVKCD-----VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSL 230 (361)
T ss_dssp SCSCCCBCT-----TTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCC
T ss_pred ccCCCCCCc-----CCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCC
Confidence 1247777 999999999999999999988776655 577999999999995
No 11
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-56 Score=391.65 Aligned_cols=182 Identities=26% Similarity=0.313 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccc---------------cCCCCcccccc------cCCCC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK---------------KGIKPKVNISF------DDAVP 69 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~---------------~~~~p~~~~~~------~~~~P 69 (192)
.+++++++|++|++|||+|||||||+|||||||+++|+|+..+ |..+|+.+|.+ ..++|
T Consensus 173 ~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~~~~~~~~P 252 (492)
T 4iao_A 173 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 252 (492)
T ss_dssp SHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGGGCCCSSCC
T ss_pred HHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHHhhCCcCCC
Confidence 5788999999999999999999999999999999999997431 22345444443 25789
Q ss_pred CHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhcc--CCCCCCCCC--
Q psy13183 70 TVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG--QKNLNIPCP-- 145 (192)
Q Consensus 70 ~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~C~-- 145 (192)
|.+|++|++|++.|++.+||||||||||++||+++++|+|+|||++..+|+.|++.++.+.+...+. ..|.++.|.
T Consensus 253 n~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg~~ 332 (492)
T 4iao_A 253 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKK 332 (492)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHHH
T ss_pred CHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCCCcccccc
Confidence 9999999999999999999999999999999999899999999999999999999988766543322 123334441
Q ss_pred -------------------------CCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 146 -------------------------YRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 146 -------------------------~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.+.|..|||.|||+||||||++|.+.++++.+++++||++||||||+
T Consensus 333 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL 404 (492)
T 4iao_A 333 RREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSL 404 (492)
T ss_dssp HHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCC
T ss_pred cccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCC
Confidence 13466899999999999999999999999999999999999999996
No 12
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-55 Score=380.88 Aligned_cols=181 Identities=27% Similarity=0.339 Sum_probs=154.3
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccc---------------cCCCCcccccc------cCCCC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK---------------KGIKPKVNISF------DDAVP 69 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~---------------~~~~p~~~~~~------~~~~P 69 (192)
+|++++++|++|++|||+|||||||+||||||||++|+|+..+ |..+|+.+|.| ..++|
T Consensus 35 ~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~~~~~~~~~P 114 (354)
T 2hjh_A 35 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 114 (354)
T ss_dssp SHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGGGGCCCCSCC
T ss_pred HHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHHHHccccCCC
Confidence 5889999999999999999999999999999999999998521 12345544543 25789
Q ss_pred CHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCC---
Q psy13183 70 TVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPY--- 146 (192)
Q Consensus 70 ~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~--- 146 (192)
|.+|++|++|++.|++.+||||||||||++||+++++|+|+|||++..+|+.|+..|+.+.....+.. ...|.|+.
T Consensus 115 n~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~-~~~P~Cp~C~~ 193 (354)
T 2hjh_A 115 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRN-LELPLCPYCYK 193 (354)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHT-TCCCBCTTTHH
T ss_pred CHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhc-cCCCcCccccc
Confidence 99999999999999999999999999999999988999999999999999999998877665443321 12345542
Q ss_pred ---------------------------CCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 147 ---------------------------RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 147 ---------------------------~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
+.|..|||.|||+||||||++|...++.+.+++++||++||||||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL 266 (354)
T 2hjh_A 194 KRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSL 266 (354)
T ss_dssp HHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCC
T ss_pred cccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCC
Confidence 2356789999999999999999999999999999999999999995
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=2.3e-55 Score=375.16 Aligned_cols=176 Identities=25% Similarity=0.444 Sum_probs=154.0
Q ss_pred HHHHHHHHHHh--CCcEEEEeCCccchhCCCCCCCCC-CCcccccc---------------cCCCCcccccc------cC
Q psy13183 11 KIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEK---------------KGIKPKVNISF------DD 66 (192)
Q Consensus 11 ~l~~l~~~i~~--a~~ivv~tGAGiS~~sGipdfr~~-~g~~~~~~---------------~~~~p~~~~~~------~~ 66 (192)
.+++++++|++ |++|||+|||||||+|||||||++ +|+|+..+ |..+|+.+|.| .+
T Consensus 30 ~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~~~~~ 109 (323)
T 1j8f_A 30 TLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQ 109 (323)
T ss_dssp SHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHHhhCc
Confidence 48899999997 899999999999999999999999 59998532 12345445543 47
Q ss_pred CCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCc--cccccccchhhhhccCCCCCCCC
Q psy13183 67 AVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK--CERQFVRKSATNSVGQKNLNIPC 144 (192)
Q Consensus 67 ~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~--C~~~~~~~~~~~~~~~~~~~~~C 144 (192)
++||.+|++|++|++.|++++||||||||||++||+++++|+|+||+++..+|+. |++.|+.+.....+. ....|+|
T Consensus 110 a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-~~~~P~C 188 (323)
T 1j8f_A 110 FKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-SEVTPKC 188 (323)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-TTCCCBC
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-cCCCCCC
Confidence 8999999999999999999999999999999999999899999999999999999 999987765443332 2246788
Q ss_pred CCCCCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 145 PYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 145 ~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
+ .|||.|||+||||||++|++.++++.+++++||++||||||+
T Consensus 189 ~-----~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl 231 (323)
T 1j8f_A 189 E-----DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSL 231 (323)
T ss_dssp T-----TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCS
T ss_pred c-----CCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCc
Confidence 7 999999999999999999999999999999999999999995
No 14
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=2.8e-53 Score=348.19 Aligned_cols=158 Identities=26% Similarity=0.444 Sum_probs=130.4
Q ss_pred CCcEEEEeCCccchhCCCCCCCCCCCccccc---------ccCCCCcccccc----------cCCCCCHHHHHHHHHHH-
Q psy13183 22 AKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF----------DDAVPTVTHMAILELVN- 81 (192)
Q Consensus 22 a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~---------~~~~~p~~~~~~----------~~~~P~~~H~~l~~l~~- 81 (192)
|++|||+||||||++|||||||+++|+|+.. .|..+|+.+|.| .+++||.+|++|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~a~Pn~~H~~La~L~~~ 80 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDA 80 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999742 245677766655 24999999999999999
Q ss_pred cCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcccceEE
Q psy13183 82 QGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTIL 161 (192)
Q Consensus 82 ~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv 161 (192)
.|++.+||||||||||++|| +++|+|+||++...+|+.|++.|+++.. +. ....|+|+ .|||.|||+||
T Consensus 81 ~g~~~~viTQNvD~Lh~~AG--~~~v~elHG~~~~~~C~~C~~~~~~~~~---~~-~~~~p~c~-----~Cgg~lrP~vv 149 (235)
T 1s5p_A 81 LGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQSGQVLDWTGD---VT-PEDKCHCC-----QFPAPLRPHVV 149 (235)
T ss_dssp HGGGEEEEESCCSSHHHHHT--CCSCEETTEEEEEEEETTTCCEEECCSC---CC-SSCCC------------CEEEEEC
T ss_pred hCCceEEEeccccchhhhcC--CCcEEEecCCceEEEeCCCCCcccchhh---cc-CCCCCCCC-----CCCCeecCcEE
Confidence 69999999999999999999 4799999999999999999998876542 11 11234444 89999999999
Q ss_pred ECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 162 DWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 162 ~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
||||+ | ..++++.+++++||++||||||+
T Consensus 150 ~FGE~-p-~~~~~a~~~~~~adl~lviGTSl 178 (235)
T 1s5p_A 150 WFGEM-P-LGMDEIYMALSMADIFIAIGTSG 178 (235)
T ss_dssp CTTSC-C-SSHHHHHHHHHHCSEEEEESCCT
T ss_pred EeCCC-H-HHHHHHHHHHhcCCEEEEECcCC
Confidence 99999 7 46899999999999999999996
No 15
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=78.24 E-value=1.8 Score=32.46 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+++++++|++|++-||+.|.|+.
T Consensus 23 ~v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 23 SPEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp CHHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcc
Confidence 378999999999999999999985
No 16
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=75.53 E-value=0.87 Score=34.07 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=19.0
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCccc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLH 157 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lr 157 (192)
..+|..|++.|... .....|| .||+.++
T Consensus 132 ~y~C~~Cg~~~~~~---------~~~~~Cp-----~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL---------PPGGVCP-----DCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC---------CGGGBCT-----TTCCBEE
T ss_pred EEECCCCCCcccCC---------CCCCcCC-----CCCCcce
Confidence 46899999988632 1123677 9998763
No 17
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=73.91 E-value=1.8 Score=29.00 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=37.5
Q ss_pred cccccCccccccccchhhhhccCC------------------CCCCCCCCCCCCCCCCcccceEEECCCCCCHHHHHHHH
Q psy13183 115 YVDQCNKCERQFVRKSATNSVGQK------------------NLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGD 176 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~~~~~~~~~~------------------~~~~~C~~~~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~ 176 (192)
+...|+-||+...+..++.++... ...-+|| .||. =|||..+|.+.-++..
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP-----~CgE------EFyG~~Lp~~EaeKVF 75 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP-----VCGE------EFYGKTLPRREAEKVF 75 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT-----TTCC------EEETTSSCTTTHHHHH
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC-----CccH------HHhcccCChHHHHHHH
Confidence 346899999998888776543211 1123465 9986 4799999988777777
Q ss_pred HHcc
Q psy13183 177 YNSS 180 (192)
Q Consensus 177 ~~~~ 180 (192)
+.+.
T Consensus 76 ELLN 79 (95)
T 2k5c_A 76 ELLN 79 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 18
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=71.88 E-value=2.8 Score=24.82 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.0
Q ss_pred ccccccCcccccccc
Q psy13183 114 MYVDQCNKCERQFVR 128 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~ 128 (192)
+..++|..|+..|+.
T Consensus 2 m~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDP 16 (46)
T ss_dssp CCCEEETTTCCEECG
T ss_pred CCEEECCCCCeEEeC
Confidence 456799999998874
No 19
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=66.56 E-value=1.8 Score=30.02 Aligned_cols=14 Identities=57% Similarity=0.842 Sum_probs=12.5
Q ss_pred CcEEEEeCCccchh
Q psy13183 23 KHVVLHTGAGISTS 36 (192)
Q Consensus 23 ~~ivv~tGAGiS~~ 36 (192)
++|++.+|+|+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999976
No 20
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=60.03 E-value=5.9 Score=37.01 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=27.7
Q ss_pred CCCCCCCcccceEEEC---CCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 148 GFRPCRGTLHDTILDW---EHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 148 ~~~~Cgg~lrP~Vv~f---ge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
.|+.||= .+-++ |+.+..+.+++|.+.+++-.++.+=|-.|
T Consensus 180 aC~~CGP----~l~l~~~~~~~~~~~~i~~a~~~l~~G~iva~kg~gg 223 (772)
T 4g9i_A 180 ACPVCGP----SYRLYTSDGQEIYGDPLRKAAELIDKGYIVAIKGIGG 223 (772)
T ss_dssp CCTTTSC----CEEEESSSCBCCTTHHHHHHHHHHTTSCCEEECCSSS
T ss_pred CCccCCc----eEEEEcCCCCeechHHHHHHHHHHHcCCEEEEecCCe
Confidence 4789984 33332 45566678888999998888877655443
No 21
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=59.24 E-value=6.3 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.455 Sum_probs=17.4
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCC
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRG 154 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg 154 (192)
...|..|+.++.... ....+|+ .||.
T Consensus 28 ~Y~C~~CG~~~e~~~--------~d~irCp-----~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSR--------TDAVRCK-----DCGH 53 (70)
T ss_dssp CEECSSSCCEECCCT--------TSTTCCS-----SSCC
T ss_pred EEECCCCCCcceeCC--------CCCccCC-----CCCc
Confidence 457999998865431 1234677 9997
No 22
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=58.92 E-value=4.4 Score=28.59 Aligned_cols=33 Identities=18% Similarity=0.550 Sum_probs=21.5
Q ss_pred EeCccccccccCccccccccchhhhhccCCCCCC-CCCCCCCCCCCCc
Q psy13183 109 ELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNI-PCPYRGFRPCRGT 155 (192)
Q Consensus 109 elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~Cgg~ 155 (192)
++.-.-..++|.+|+..+..+. ... .|| .||+.
T Consensus 66 ~i~~~p~~~~C~~CG~~~e~~~---------~~~~~CP-----~Cgs~ 99 (119)
T 2kdx_A 66 DIVDEKVELECKDCSHVFKPNA---------LDYGVCE-----KCHSK 99 (119)
T ss_dssp EEEEECCEEECSSSSCEECSCC---------STTCCCS-----SSSSC
T ss_pred EEEeccceEEcCCCCCEEeCCC---------CCCCcCc-----cccCC
Confidence 3333344689999999876421 134 577 99986
No 23
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=57.38 E-value=6.1 Score=23.51 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=17.8
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCC
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRG 154 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg 154 (192)
...|..|++++..+++.. . ..-+|| .||-
T Consensus 3 iY~C~rCg~~fs~~el~~----l-P~IrCp-----yCGy 31 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKV----L-PGVRCP-----YCGY 31 (48)
T ss_dssp --CCCCTTTTCCCCCSCC----C-SSSCCT-----TTCC
T ss_pred EEEeeccCCCccHHHHhh----C-CCcccC-----ccCc
Confidence 357999999987665321 1 133566 8984
No 24
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=56.78 E-value=7.6 Score=29.21 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC-----------CCCCCCCCCC-cccccccCCCC-ccccccc-CCCCCHHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA-----------GIPDFRGPNG-VWTLEKKGIKP-KVNISFD-DAVPTVTHMA 75 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s-----------Gipdfr~~~g-~~~~~~~~~~p-~~~~~~~-~~~P~~~H~~ 75 (192)
+.+++++++|.+|+.-|++.|.|-|... |+|.+--.+. .+.......++ .....+. .-+....-.+
T Consensus 32 ~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~ 111 (201)
T 3fxa_A 32 EALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNL 111 (201)
T ss_dssp HHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 5789999999999645688899988554 4443322110 00000000111 1112222 2223334455
Q ss_pred HHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC
Q psy13183 76 ILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH 111 (192)
Q Consensus 76 l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH 111 (192)
+....+.|-..-.||.|-+.-..+.- +.++.+.
T Consensus 112 ~~~ak~~g~~vi~IT~~~~s~l~~~a---d~~l~~~ 144 (201)
T 3fxa_A 112 IPACKTKGSTLIGVTENPDSVIAKEA---DIFFPVS 144 (201)
T ss_dssp HHHHHHHTCEEEEEESCTTSHHHHHC---SEEEECC
T ss_pred HHHHHHcCCeEEEEECCCCChhHHhC---CEEEEcC
Confidence 66666678777899999887554431 3455543
No 25
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=55.88 E-value=4.7 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=16.6
Q ss_pred eEEeCccccccccCccccccccch
Q psy13183 107 LAELHGNMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 107 v~elHG~~~~~~C~~C~~~~~~~~ 130 (192)
-+++.-.-..++|.+||..+....
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEEGGG
T ss_pred EEEEEecCCcEECCCCCCEEeccc
Confidence 344444455789999999887554
No 26
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=55.61 E-value=8.7 Score=23.20 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=11.8
Q ss_pred cccccCccccccccc
Q psy13183 115 YVDQCNKCERQFVRK 129 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~ 129 (192)
..++|..|+..|+.+
T Consensus 2 ~~y~C~~CGyvYd~~ 16 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPA 16 (52)
T ss_dssp CCEECSSSCCCCCTT
T ss_pred CcEEeCCCCeEEcCC
Confidence 468999999988643
No 27
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=54.54 E-value=11 Score=33.29 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|.+
T Consensus 188 ~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 188 EEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCch
Confidence 45688999999999999999999975
No 28
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=54.47 E-value=8.3 Score=23.57 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=11.8
Q ss_pred cccccCccccccccc
Q psy13183 115 YVDQCNKCERQFVRK 129 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~ 129 (192)
..++|..|+..|+.+
T Consensus 2 ~~y~C~~CGyvYd~~ 16 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEA 16 (55)
T ss_dssp CEEEETTTCCEEETT
T ss_pred CcEEeCCCCeEECCC
Confidence 467999999988653
No 29
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=53.94 E-value=12 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.+++.++++++.|+++++| ++.|.|-|..
T Consensus 26 ~i~~~~~~~~~~i~~a~~I-~i~G~G~S~~ 54 (196)
T 2yva_A 26 AISRAAMTLVQSLLNGNKI-LCCGNGTSAA 54 (196)
T ss_dssp HHHHHHHHHHHHHHTTCCE-EEEESTHHHH
T ss_pred HHHHHHHHHHHHHHcCCEE-EEEeCchhhH
Confidence 4557889999999998876 5678888854
No 30
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=53.16 E-value=11 Score=33.29 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC------------CCCCCCCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA------------GIPDFRGP 45 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s------------Gipdfr~~ 45 (192)
.+.+++++++|++|++.||+.|.|+..+. |+|.+-+.
T Consensus 215 ~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 263 (570)
T 2vbf_A 215 QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLN 263 (570)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECS
T ss_pred HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHCCCEEECc
Confidence 56799999999999999999999986432 77766543
No 31
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=52.92 E-value=4 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=13.0
Q ss_pred CcEEEEeCCccchhC
Q psy13183 23 KHVVLHTGAGISTSA 37 (192)
Q Consensus 23 ~~ivv~tGAGiS~~s 37 (192)
++|++.+|+|+|++.
T Consensus 22 kkIlvvC~sG~gTS~ 36 (113)
T 1tvm_A 22 RKIIVACGGAVATST 36 (113)
T ss_dssp EEEEEESCSCSSHHH
T ss_pred cEEEEECCCCHHHHH
Confidence 579999999999874
No 32
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=52.66 E-value=15 Score=27.06 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC-----------CCCCCCCC--CCcccccccCCCC-ccccccc-CCCCCHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA-----------GIPDFRGP--NGVWTLEKKGIKP-KVNISFD-DAVPTVTHM 74 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s-----------Gipdfr~~--~g~~~~~~~~~~p-~~~~~~~-~~~P~~~H~ 74 (192)
+.+++++++|.+|++ |++.|.|-|... |++.+--. ...+.......++ .....+. .-+....-.
T Consensus 27 ~~l~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~ 105 (187)
T 3sho_A 27 EAIEAAVEAICRADH-VIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVA 105 (187)
T ss_dssp HHHHHHHHHHHHCSE-EEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHH
T ss_pred HHHHHHHHHHHhCCE-EEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence 568899999999975 578899988654 33322111 0111000001111 1112222 223344555
Q ss_pred HHHHHHHcCCccEEEeccCcchhhh
Q psy13183 75 AILELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 75 ~l~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
++....+.|-..-.||.|-++-..+
T Consensus 106 ~~~~ak~~g~~vi~IT~~~~s~l~~ 130 (187)
T 3sho_A 106 ALAGAAERGVPTMALTDSSVSPPAR 130 (187)
T ss_dssp HHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred HHHHHHHCCCCEEEEeCCCCCcchh
Confidence 6666666787778899888875544
No 33
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=50.38 E-value=17 Score=32.02 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+.+++++++|++|++.||+.|.|..
T Consensus 195 ~~~~i~~~~~~l~~a~rpvi~~G~g~~ 221 (566)
T 2vbi_A 195 LKAAVDATVALLEKSASPVMLLGSKLR 221 (566)
T ss_dssp HHHHHHHHHHHHHTCSCEEEEECTTTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 456799999999999999999999985
No 34
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=49.87 E-value=7.7 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.+++.+++++++.-||++|||+++.
T Consensus 40 p~~~~~~~~~a~~~ViIa~AG~aa~ 64 (157)
T 2ywx_A 40 PELVEEIVKNSKADVFIAIAGLAAH 64 (157)
T ss_dssp HHHHHHHHHHCCCSEEEEEEESSCC
T ss_pred HHHHHHHHHhcCCCEEEEEcCchhh
Confidence 4677788888777889999999844
No 35
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=49.16 E-value=17 Score=32.11 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+.+++++++|++|++.||+.|.|..
T Consensus 195 ~~~~i~~~~~~l~~a~rpvil~G~g~~ 221 (568)
T 2wvg_A 195 LNAAVEETLKFIANRDKVAVLVGSKLR 221 (568)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECTTTT
T ss_pred cHHHHHHHHHHHHhCCCCEEEECcccc
Confidence 346799999999999999999999985
No 36
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=49.15 E-value=14 Score=32.51 Aligned_cols=28 Identities=7% Similarity=-0.076 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
...+.+++++++|++|++.||+.|.|+.
T Consensus 194 ~~~~~i~~~~~~l~~a~rpvil~G~g~~ 221 (552)
T 1ovm_A 194 CLKAFRDAAENKLAMSKRTALLADFLVL 221 (552)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEECHHHH
T ss_pred chHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 3456799999999999999999999985
No 37
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=48.86 E-value=12 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=12.9
Q ss_pred ccccccCccccccccc
Q psy13183 114 MYVDQCNKCERQFVRK 129 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~ 129 (192)
...++|..|+..|+.+
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 5678999999988653
No 38
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=48.85 E-value=8.7 Score=28.23 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC-----------CCCCCCCCCCcc-cccccCCCC-cccccccC-CCCCHHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA-----------GIPDFRGPNGVW-TLEKKGIKP-KVNISFDD-AVPTVTHMA 75 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s-----------Gipdfr~~~g~~-~~~~~~~~p-~~~~~~~~-~~P~~~H~~ 75 (192)
+.+++++++|.++++-|++.|.|-|... |++.+--.+... .......++ .....+.. -+....-.+
T Consensus 36 ~~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~ 115 (183)
T 2xhz_A 36 QNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITAL 115 (183)
T ss_dssp HHHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHH
Confidence 3789999999999855678899988654 333211111000 000000111 12222322 233344555
Q ss_pred HHHHHHcCCccEEEeccCcchhhh
Q psy13183 76 ILELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 76 l~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
+..+.+.|-..-.||.|-+.-..+
T Consensus 116 ~~~ak~~g~~vi~IT~~~~s~la~ 139 (183)
T 2xhz_A 116 IPVLKRLHVPLICITGRPESSMAR 139 (183)
T ss_dssp HHHHHTTTCCEEEEESCTTSHHHH
T ss_pred HHHHHHCCCCEEEEECCCCChhHH
Confidence 666666677778899988875544
No 39
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=48.40 E-value=11 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHH-HHHHHhCCcEEEEeCCccc
Q psy13183 12 IKVL-SEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 12 l~~l-~~~i~~a~~ivv~tGAGiS 34 (192)
++++ +++|++|++-|++.|. +.
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~ 46 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DM 46 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CC
Confidence 6788 9999999999999999 65
No 40
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=47.63 E-value=6.9 Score=27.22 Aligned_cols=16 Identities=6% Similarity=0.084 Sum_probs=13.2
Q ss_pred CCcEEEEeCCccchhC
Q psy13183 22 AKHVVLHTGAGISTSA 37 (192)
Q Consensus 22 a~~ivv~tGAGiS~~s 37 (192)
..+|+++++||+|++-
T Consensus 6 ~mkIlL~C~aGmSTsl 21 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQ 21 (108)
T ss_dssp CEEEEEEESSSSHHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4579999999999763
No 41
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=47.16 E-value=20 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
.+++.++.+++.|.++++| ++.|.|-|...
T Consensus 30 ~i~~~~~~i~~~i~~a~~I-~i~G~G~S~~~ 59 (199)
T 1x92_A 30 YIEQASLVMVNALLNEGKI-LSCGNGGSAGD 59 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCE-EEECSTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEE-EEEcCchhHHH
Confidence 4445566666888888776 56799988643
No 42
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=46.74 E-value=13 Score=34.61 Aligned_cols=40 Identities=10% Similarity=-0.018 Sum_probs=24.2
Q ss_pred CCCCCCCcccceEEECCCCCCHHHHHHHHHHcccCCEEEEEecC
Q psy13183 148 GFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 148 ~~~~Cgg~lrP~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTS 191 (192)
.|+.||=.+ .+.+..-..+.+++|.+.+++-.++.+=|-+
T Consensus 185 aC~~CGP~l----~l~~~~~~~~~i~~aa~~L~~G~IVa~pt~t 224 (761)
T 3vth_A 185 ACFDCGPSL----SFVGEGCFDDEIKCVAKALKEGKIVAIKGIG 224 (761)
T ss_dssp CCTTTSCCE----EEESSCCCSCHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCccCCee----EEeCCCCchHHHHHHHHHHHcCCEEEEECCc
Confidence 477998433 2332211345678888888888877765533
No 43
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=46.66 E-value=17 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccch----------hCCCCCCCC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIST----------SAGIPDFRG 44 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~----------~sGipdfr~ 44 (192)
+.+++++++|++|++.||+.|.|... ..|+|.+-+
T Consensus 202 ~~i~~~~~~l~~a~rpvIl~G~g~~~~~~~l~~lae~~~~Pv~~t 246 (590)
T 1ybh_A 202 SHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVAST 246 (590)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHCCCEEEC
T ss_pred HHHHHHHHHHHhCCCcEEEECcccccCHHHHHHHHHHhCCCEEEc
Confidence 56899999999999999999999742 247776544
No 44
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.50 E-value=26 Score=21.28 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=11.8
Q ss_pred cccccCccccccccc
Q psy13183 115 YVDQCNKCERQFVRK 129 (192)
Q Consensus 115 ~~~~C~~C~~~~~~~ 129 (192)
...+|..|+..|+.+
T Consensus 2 ~~y~C~vCGyvYd~~ 16 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPE 16 (54)
T ss_dssp CCEEETTTCCEECTT
T ss_pred CceECCCCCeEECCC
Confidence 467899999988753
No 45
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=46.46 E-value=6.7 Score=29.16 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=12.8
Q ss_pred HHcccCCEEEEEecC
Q psy13183 177 YNSSIADLSIIESKR 191 (192)
Q Consensus 177 ~~~~~~DlllviGTS 191 (192)
+.+++||++|++|+.
T Consensus 103 ~~~~~aDlvl~iG~~ 117 (170)
T 3cf4_G 103 DGNGNYDMIITIGFK 117 (170)
T ss_dssp SSSCCCSEEEEESCC
T ss_pred HHhhcCCEEEEECCc
Confidence 457899999999985
No 46
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.28 E-value=17 Score=26.33 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEe--CccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~el--HG~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..|-- ..|++ +..-..+.|..||+....+
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~-----------~~Y~~~~~~~H~HliC~~Cg~v~~~~ 112 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKSG-----------RRYEIAAKEHHDHIICLHCGKIIEFA 112 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTTE-----------EEEEESCSCCCEEEEETTTCCEEEEC
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCCc-----------eEEEecCCCCceEEEECCCCCEEEec
Confidence 45667789999999999998777654421 23333 1223568999999976653
No 47
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=46.27 E-value=14 Score=27.31 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
+.++.+.+.|.+|++|||-|..+-
T Consensus 24 EEv~~Ir~~I~nakkIvV~t~N~k 47 (156)
T 3brc_A 24 EEVEAIRKYIRSARRTVVPNWNAE 47 (156)
T ss_dssp HHHHHHHHHHHHCSCEEECCCCHH
T ss_pred HHHHHHHHHHhcCCeEEEecCCch
Confidence 456789999999999999887764
No 48
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=46.05 E-value=24 Score=27.36 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCccEEEeccCcc
Q psy13183 71 VTHMAILELVNQGKVHYVVSQNIDG 95 (192)
Q Consensus 71 ~~H~~l~~l~~~g~~~~viTqNiD~ 95 (192)
..-.++....+.|-..-.||.|-+.
T Consensus 123 ~~i~~~~~Ak~~G~~vI~IT~~~~s 147 (243)
T 3cvj_A 123 VPVEMAIESRNIGAKVIAMTSMKHS 147 (243)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccc
Confidence 3445555556667767788888663
No 49
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=45.59 E-value=17 Score=32.10 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
...+.+++++++|++|++.||+.|.|+.
T Consensus 207 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 234 (565)
T 2nxw_A 207 ALAACADEVLAAMRSATSPVLMVCVEVR 234 (565)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 3456789999999999999999999875
No 50
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=45.47 E-value=17 Score=32.45 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|.+
T Consensus 199 ~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 199 VQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCch
Confidence 45689999999999999999999984
No 51
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=45.39 E-value=18 Score=31.94 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
..+.+++++++|++|++.||+.|.|..
T Consensus 197 ~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (563)
T 2vk8_A 197 EKEVIDTILVLDKDAKNPVILADACCS 223 (563)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred hHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 345789999999999999999999984
No 52
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=44.79 E-value=5.9 Score=28.24 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.9
Q ss_pred CCcEEEEeCCccchhC
Q psy13183 22 AKHVVLHTGAGISTSA 37 (192)
Q Consensus 22 a~~ivv~tGAGiS~~s 37 (192)
-++|++.+|+||+++.
T Consensus 13 ~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCEEEECCSSSSHHHH
T ss_pred ccEEEEECCCcHHHHH
Confidence 4689999999999875
No 53
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=44.42 E-value=19 Score=31.77 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|++|++.||+.|.|..
T Consensus 195 ~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 195 DAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHcCCCeEEEECCCcc
Confidence 5688999999999999999999975
No 54
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=44.38 E-value=17 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
+.+.++.+++.|+++++| ++.|+|-|...+
T Consensus 57 i~~~i~~i~~~l~~a~rI-~~~G~G~S~~lA 86 (306)
T 1nri_A 57 ISLAVEQIVQAFQQGGRL-IYIGAGTSGRLG 86 (306)
T ss_dssp HHHHHHHHHHHHHTTCCE-EEEESHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEE-EEEeccHhHHHH
Confidence 346678888999888775 567999995544
No 55
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=44.04 E-value=14 Score=27.12 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC-----------CCCCCCCCCCcccccccCCCC-cccccccC-CCCCHHHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA-----------GIPDFRGPNGVWTLEKKGIKP-KVNISFDD-AVPTVTHMAI 76 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s-----------Gipdfr~~~g~~~~~~~~~~p-~~~~~~~~-~~P~~~H~~l 76 (192)
+.+++++++|.++++| ++.|.|-|... |++.+--.+. . ....++ .....+.. -+....-.++
T Consensus 25 ~~i~~~~~~i~~a~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~---~~~~~~~d~vI~iS~sG~t~~~~~~~ 99 (186)
T 1m3s_A 25 EEADQLADHILSSHQI-FTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI-L---TPPLAEGDLVIIGSGSGETKSLIHTA 99 (186)
T ss_dssp HHHHHHHHHHHHCSCE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTST-T---CCCCCTTCEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCeE-EEEecCHHHHHHHHHHHHHHhcCCeEEEeCcc-c---ccCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 5689999999999875 56799988543 3322111110 0 000111 11122222 2223344555
Q ss_pred HHHHHcCCccEEEeccCcchhhh
Q psy13183 77 LELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 77 ~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
....+.|-..-.||.|-+.-..+
T Consensus 100 ~~ak~~g~~vi~IT~~~~s~l~~ 122 (186)
T 1m3s_A 100 AKAKSLHGIVAALTINPESSIGK 122 (186)
T ss_dssp HHHHHTTCEEEEEESCTTSHHHH
T ss_pred HHHHHCCCEEEEEECCCCCchHH
Confidence 66666677778899987764433
No 56
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=43.51 E-value=9 Score=29.28 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=11.9
Q ss_pred ccccccCcccccccc
Q psy13183 114 MYVDQCNKCERQFVR 128 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~ 128 (192)
...++|+.||..|..
T Consensus 153 ~~~~~C~~CG~~~~g 167 (191)
T 1lko_A 153 ATKWRCRNCGYVHEG 167 (191)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred CceEEECCCCCEeeC
Confidence 447899999988763
No 57
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=43.40 E-value=23 Score=32.23 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|..
T Consensus 276 ~~~i~~a~~~L~~AkrPvIl~G~g~~ 301 (677)
T 1t9b_A 276 MQSINKAADLINLAKKPVLYVGAGIL 301 (677)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHHhCCCeEEEECcccc
Confidence 35689999999999999999999984
No 58
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=43.39 E-value=15 Score=32.43 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|..
T Consensus 198 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 198 PKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEECcccc
Confidence 35688999999999999999999985
No 59
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=42.71 E-value=15 Score=23.58 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=13.2
Q ss_pred cccccccCccccccccc
Q psy13183 113 NMYVDQCNKCERQFVRK 129 (192)
Q Consensus 113 ~~~~~~C~~C~~~~~~~ 129 (192)
.+..++|..|+..|+.+
T Consensus 4 ~m~~y~C~vCGyiYd~~ 20 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPE 20 (70)
T ss_dssp CSSCEEETTTCCEECTT
T ss_pred CCceEEeCCCCEEEcCC
Confidence 35678999999988643
No 60
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=42.07 E-value=16 Score=32.27 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|..
T Consensus 200 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 200 EDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccc
Confidence 35688999999999999999999985
No 61
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=41.26 E-value=15 Score=26.81 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC-----------CCCCCCCCCCcccccccCCCC-cccccccC-CCCCHHHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA-----------GIPDFRGPNGVWTLEKKGIKP-KVNISFDD-AVPTVTHMAI 76 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s-----------Gipdfr~~~g~~~~~~~~~~p-~~~~~~~~-~~P~~~H~~l 76 (192)
+.+++++++|.++++| ++.|.|-|... |+|.+--.+. . ....++ .....+.. -+....-.++
T Consensus 28 ~~i~~~~~~i~~a~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~--~--~~~~~~~d~vi~iS~sG~t~~~~~~~ 102 (180)
T 1jeo_A 28 NKLDSLIDRIIKAKKI-FIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET--T--TPSYEKDDLLILISGSGRTESVLTVA 102 (180)
T ss_dssp HHHHHHHHHHHHCSSE-EEECCHHHHHHHHHHHHHHHHTTCCEEETTST--T--CCCCCTTCEEEEEESSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCEE-EEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC--c--cccCCCCCEEEEEeCCCCcHHHHHHH
Confidence 5689999999999876 56799988653 3322111110 0 000111 11222222 2223344555
Q ss_pred HHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCc
Q psy13183 77 LELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 112 (192)
Q Consensus 77 ~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG 112 (192)
....+.|-..-.||.|-+. ..+.. +.++.+..
T Consensus 103 ~~ak~~g~~vi~IT~~~~s-l~~~a---d~~l~~~~ 134 (180)
T 1jeo_A 103 KKAKNINNNIIAIVCECGN-VVEFA---DLTIPLEV 134 (180)
T ss_dssp HHHHTTCSCEEEEESSCCG-GGGGC---SEEEECCC
T ss_pred HHHHHCCCcEEEEeCCCCh-HHHhC---CEEEEeCC
Confidence 5566667777889999888 43331 34555543
No 62
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=40.86 E-value=9.2 Score=26.27 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=11.2
Q ss_pred cEEEEeCCccchh
Q psy13183 24 HVVLHTGAGISTS 36 (192)
Q Consensus 24 ~ivv~tGAGiS~~ 36 (192)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 4899999999866
No 63
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.49 E-value=11 Score=28.39 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.7
Q ss_pred cccccCccccccc
Q psy13183 115 YVDQCNKCERQFV 127 (192)
Q Consensus 115 ~~~~C~~C~~~~~ 127 (192)
..++|+.||..|.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4678999998875
No 64
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=40.37 E-value=12 Score=28.28 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=11.0
Q ss_pred ccCCEEEEEecC
Q psy13183 180 SIADLSIIESKR 191 (192)
Q Consensus 180 ~~~DlllviGTS 191 (192)
++|||+|+||+.
T Consensus 107 ~~aDLvI~iG~r 118 (174)
T 1ytl_A 107 GNYDLVLMLGSI 118 (174)
T ss_dssp CCCSEEEEESCC
T ss_pred CCCCEEEEECCc
Confidence 899999999984
No 65
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=40.23 E-value=7.5 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.2
Q ss_pred CcEEEEeCCccchhC
Q psy13183 23 KHVVLHTGAGISTSA 37 (192)
Q Consensus 23 ~~ivv~tGAGiS~~s 37 (192)
++|++.+|+|+|++.
T Consensus 19 ~kIlvvC~sG~gTS~ 33 (110)
T 3czc_A 19 VKVLTACGNGMGSSM 33 (110)
T ss_dssp EEEEEECCCCHHHHH
T ss_pred cEEEEECCCcHHHHH
Confidence 679999999999874
No 66
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=40.02 E-value=15 Score=29.72 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.+.++.|+++++.|++|.|+.|+|+..+
T Consensus 155 ~~g~~~L~~Lv~~a~~i~Im~GgGv~~~ 182 (256)
T 1twd_A 155 LQGLSKIMELIAHRDAPIIMAGAGVRAE 182 (256)
T ss_dssp TTTHHHHHHHHTSSSCCEEEEESSCCTT
T ss_pred HHHHHHHHHHHHhhCCcEEEecCCcCHH
Confidence 3457788888887779999999999754
No 67
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=39.93 E-value=24 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
+.+++++++|++|++.||+.|.|+
T Consensus 193 ~~i~~~~~~l~~a~rpvil~G~g~ 216 (590)
T 1v5e_A 193 QDIDAAVELLNNSKRPVIYAGIGT 216 (590)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGG
T ss_pred HHHHHHHHHHHhCCCeEEEEcCch
Confidence 568999999999999999999998
No 68
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=39.68 E-value=18 Score=27.25 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC-----------CCCCCCCCCCcccccccCCCC-cccccccC-CCCCHHHHHH
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA-----------GIPDFRGPNGVWTLEKKGIKP-KVNISFDD-AVPTVTHMAI 76 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s-----------Gipdfr~~~g~~~~~~~~~~p-~~~~~~~~-~~P~~~H~~l 76 (192)
+.+++++++|.++++| ++.|.|-|... |++.+--.+. . ....++ .....+.. -+....-.++
T Consensus 35 ~~l~~~~~~i~~a~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~--~--~~~~~~~DvvI~iS~SG~t~~~i~~~ 109 (200)
T 1vim_A 35 ETVGEMIKLIDSARSI-FVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET--V--TPRITDQDVLVGISGSGETTSVVNIS 109 (200)
T ss_dssp HHHHHHHHHHHHSSCE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTST--T--CCCCCTTCEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCEE-EEEEecHHHHHHHHHHHHHHhcCCeEEEeCCc--c--ccCCCCCCEEEEEeCCCCcHHHHHHH
Confidence 5688999999999865 57799988543 3332211110 0 001111 12222222 2333344555
Q ss_pred HHHHHcCCccEEEeccCcchhhh
Q psy13183 77 LELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 77 ~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
..+.+.|-..-.||.|-+.-..+
T Consensus 110 ~~ak~~g~~vI~IT~~~~s~La~ 132 (200)
T 1vim_A 110 KKAKDIGSKLVAVTGKRDSSLAK 132 (200)
T ss_dssp HHHHHHTCEEEEEESCTTSHHHH
T ss_pred HHHHHCCCeEEEEECCCCChHHH
Confidence 56666677778899998875444
No 69
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.58 E-value=20 Score=24.90 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=10.5
Q ss_pred ccccccCcccccc
Q psy13183 114 MYVDQCNKCERQF 126 (192)
Q Consensus 114 ~~~~~C~~C~~~~ 126 (192)
+...+|.+||..|
T Consensus 65 v~p~~C~~CG~~F 77 (105)
T 2gmg_A 65 IKPAQCRKCGFVF 77 (105)
T ss_dssp ECCCBBTTTCCBC
T ss_pred EECcChhhCcCee
Confidence 3467999999887
No 70
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=39.25 E-value=27 Score=25.49 Aligned_cols=30 Identities=10% Similarity=-0.019 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHcCCccEEEeccCcchhhh
Q psy13183 70 TVTHMAILELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 70 ~~~H~~l~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
...-.++....++|-..-.||.|-++-..+
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~ 153 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNK 153 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHH
Confidence 334556666666677677888887654433
No 71
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=38.85 E-value=19 Score=31.84 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|..
T Consensus 203 ~~~v~~~~~~l~~a~rpvIl~G~g~~ 228 (573)
T 2iht_A 203 QKAADQAAALLAEAKHPVLVVGAAAI 228 (573)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 45689999999999999999999874
No 72
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=38.69 E-value=19 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|..
T Consensus 191 ~~~v~~~~~~l~~a~rpvil~G~g~~ 216 (563)
T 2uz1_A 191 PADLDQALALLRKAERPVIVLGSEAS 216 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccc
Confidence 35688999999999999999999985
No 73
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.26 E-value=24 Score=18.92 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=14.5
Q ss_pred eCccccccccCccccccccch
Q psy13183 110 LHGNMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 110 lHG~~~~~~C~~C~~~~~~~~ 130 (192)
.|-.-....|..|++.+....
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~~ 24 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRKD 24 (45)
T ss_dssp CCSSCCSSEETTTTEECSCHH
T ss_pred CcCCCCCCcCCCCCcccCCHH
Confidence 344455678999999876543
No 74
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.19 E-value=17 Score=22.76 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=23.5
Q ss_pred ccccccccCccccccccchhhhhccC--CCCCCCCCCCCCCCCCCcccce
Q psy13183 112 GNMYVDQCNKCERQFVRKSATNSVGQ--KNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
|+.+...|..|++...... +...+. .+..-.|. .|+..|.+.
T Consensus 1 ~s~~~~~C~~C~~~I~~~~-v~a~~~~wH~~CF~C~-----~C~~~L~~~ 44 (73)
T 1wig_A 1 GSSGSSGCDSCEKYITGRV-LEAGEKHYHPSCALCV-----RCGQMFAEG 44 (73)
T ss_dssp CCCSCCSCSSSCCCCSSCC-BCCSSCCBCTTTSCCS-----SSCCCCCSS
T ss_pred CCcCcCCcccCCCEecCee-EEeCCCCCCCCcCEeC-----CCCCCCCCC
Confidence 5677788999988754322 222221 12233444 788777643
No 75
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=38.15 E-value=20 Score=32.04 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+++++++|++|++.||+.|.|+.
T Consensus 213 ~~~i~~~~~~l~~a~rpvil~G~g~~ 238 (616)
T 2pan_A 213 RMQIEKAVEMLIQAERPVIVAGGGVI 238 (616)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 45689999999999999999999984
No 76
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=37.96 E-value=31 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCccEEEeccCcch
Q psy13183 71 VTHMAILELVNQGKVHYVVSQNIDGL 96 (192)
Q Consensus 71 ~~H~~l~~l~~~g~~~~viTqNiD~L 96 (192)
..-.++....+.|-..-.||.|-++-
T Consensus 146 ~~i~~~~~ak~~G~~vIaIT~~~~s~ 171 (212)
T 2i2w_A 146 NVIKAIAAAREKGMKVITLTGKDGGK 171 (212)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTCGG
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34556666666676667788876554
No 77
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=37.91 E-value=35 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.003 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCccEEEeccCcchhhh
Q psy13183 71 VTHMAILELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 71 ~~H~~l~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
..-.++....+.|-....||.|-++-..+
T Consensus 131 ~~~~~~~~ak~~g~~vI~IT~~~~s~L~~ 159 (198)
T 2xbl_A 131 NILAAFREAKAKGMTCVGFTGNRGGEMRE 159 (198)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCCCTHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCcHHH
Confidence 34455556666676667788887654433
No 78
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.80 E-value=27 Score=24.72 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..| | ...|++. ..-..+.|..||+..+.+
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--------G---HAVFELADSGHHDHMVCVDTGEVIEFM 104 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--------S---SCEEEESSSCCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEeCCCCcceEEEECCCCCEEEec
Confidence 456667899999999999876554322 1 1234431 122457999999976653
No 79
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=37.23 E-value=25 Score=28.95 Aligned_cols=33 Identities=9% Similarity=-0.119 Sum_probs=20.9
Q ss_pred ceEEECCCC-CC-HHHHHHHHHHcccCCEEEEEec
Q psy13183 158 DTILDWEHN-LP-QKDINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 158 P~Vv~fge~-~p-~~~~~~a~~~~~~~DlllviGT 190 (192)
|++..|+.= .- .+..+++.+.+.++|++||||.
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg 218 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGG 218 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESC
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECC
Confidence 455555441 11 2244556677889999999995
No 80
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.06 E-value=18 Score=26.02 Aligned_cols=53 Identities=11% Similarity=-0.016 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..|-- ..|++. ..-..+.|..||+.+..+
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~~~-----------~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGHGA-----------PTYHLADRHHHIHLVCRDCTNVIEAD 103 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGGGC-----------EEEEETTSCCSEEEEESSSSCEEEEC
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCCCc-----------eEEEeCCCCCceEEEECCCCCEEEec
Confidence 44566789999999999988776543311 123321 123458899999976543
No 81
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=36.95 E-value=25 Score=29.11 Aligned_cols=93 Identities=14% Similarity=0.017 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEEeCCccchhCCCCC---CCCCC-Cccc----ccc--cC----C-CCccccccc-CC
Q psy13183 7 DFDKKIKVLSEWID---KAKHVVLHTGAGISTSAGIPD---FRGPN-GVWT----LEK--KG----I-KPKVNISFD-DA 67 (192)
Q Consensus 7 ~~~~~l~~l~~~i~---~a~~ivv~tGAGiS~~sGipd---fr~~~-g~~~----~~~--~~----~-~p~~~~~~~-~~ 67 (192)
...+.++++++.|. ++++| +++|.|-|..+|..- |.... |+-. ... +. . .......+. .-
T Consensus 22 l~~~~i~~~~~~i~~~~~a~~I-~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG 100 (347)
T 3fkj_A 22 VAHENARRIISDILGKQNIERV-WFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQG 100 (347)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEE-EEEESTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEEEEESSS
T ss_pred cCHHHHHHHHHHHHhhCCCCEE-EEEEehHHHHHHHHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEEEEeCCC
Confidence 34577999999998 66555 778999997765321 00000 1100 000 00 0 111222222 33
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccCcchhhhc
Q psy13183 68 VPTVTHMAILELVNQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 68 ~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~a 100 (192)
+-..+-.++....+.|-....||.|.++-..+.
T Consensus 101 ~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ 133 (347)
T 3fkj_A 101 NTAETVAAARVAREKGAATIGLVYQPDTPLCEY 133 (347)
T ss_dssp CCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHT
T ss_pred CcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhh
Confidence 444556666666667877788898888876665
No 82
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.83 E-value=26 Score=24.97 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..|--..++.... ++.-..+.|..|++.++.+
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~--------~~~H~HliC~~Cg~v~~~~ 100 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCST--------GDHHHHLVCRACGKAVEVE 100 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSC--------SSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCC--------CCCccEEEECCCCCEeecc
Confidence 4456678999999999998876654221112221110 0122458999999976553
No 83
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.49 E-value=21 Score=21.45 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=11.1
Q ss_pred ccccCccccccccc
Q psy13183 116 VDQCNKCERQFVRK 129 (192)
Q Consensus 116 ~~~C~~C~~~~~~~ 129 (192)
.++|..|+..|+.+
T Consensus 2 ~~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 2 KLSCKICGYIYDED 15 (52)
T ss_dssp EEEESSSSCEEETT
T ss_pred cEEeCCCCeEECCC
Confidence 47899999988653
No 84
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=35.99 E-value=43 Score=23.51 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
+.+.+.++.+.+.+++.+.++|-+-||+|-+
T Consensus 73 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 103 (157)
T 3rgo_A 73 ANLHKGVQFALKYQALGQCVYVHCKAGRSRS 103 (157)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEESSSSSSHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCChH
Confidence 3445555666666666689999999999844
No 85
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=34.68 E-value=23 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|++|++.||+.|.|..
T Consensus 193 ~~v~~~~~~l~~a~rpvIl~G~g~~ 217 (589)
T 2pgn_A 193 EDVREAAAQLVAAKNPVILAGGGVA 217 (589)
T ss_dssp HHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc
Confidence 5689999999999999999999985
No 86
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=34.32 E-value=21 Score=31.21 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
+.+++++++|++|++.||+.|.|..
T Consensus 188 ~~i~~~~~~l~~a~rpvil~G~g~~ 212 (528)
T 1q6z_A 188 QDLDILVKALNSASNPAIVLGPDVD 212 (528)
T ss_dssp HHHHHHHHHHHHCSSCEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEECCccc
Confidence 4688999999999999999999964
No 87
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=34.19 E-value=20 Score=24.02 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=12.9
Q ss_pred ccccccCccccccccc
Q psy13183 114 MYVDQCNKCERQFVRK 129 (192)
Q Consensus 114 ~~~~~C~~C~~~~~~~ 129 (192)
+..++|..|+..|+.+
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 5679999999988643
No 88
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=34.15 E-value=20 Score=31.96 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchh-----------CCCCCCCC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTS-----------AGIPDFRG 44 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~-----------sGipdfr~ 44 (192)
+.+++++++|++|++.||+.|.|.... .|+|.+-.
T Consensus 231 ~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t 276 (604)
T 2x7j_A 231 ESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILAD 276 (604)
T ss_dssp GGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred hhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEEc
Confidence 457899999999999999999998433 37887654
No 89
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.96 E-value=25 Score=21.24 Aligned_cols=42 Identities=24% Similarity=0.532 Sum_probs=23.6
Q ss_pred ccccccccCccccccccchhhhhccC--CCCCCCCCCCCCCCCCCcccce
Q psy13183 112 GNMYVDQCNKCERQFVRKSATNSVGQ--KNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
|++....|..|++... ...+...+. .+..-.|. .|+..|...
T Consensus 1 ~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~-----~C~~~L~~~ 44 (66)
T 1nyp_A 1 GSMGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCA-----KCEKPFLGH 44 (66)
T ss_dssp CCCCCCEETTTTEECC-SCEECCTTSBEETTTCBCT-----TTCCBCSSS
T ss_pred CCcCCCCCcccCCEec-ceEEEECccccccCcCEEC-----CCCCCCCCC
Confidence 5667788999998765 222222211 12333444 788777653
No 90
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.65 E-value=37 Score=24.47 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..| + ...|++. ..-..+.|..|++.+..+
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~--~---------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG--G---------KSVFELSTQHHHDHLVCLDCGEVIEFS 103 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG--G---------CEEEEECCSSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--C---------ceEEEecCCCceeEEEECCCCCEEEec
Confidence 456667899999999999887664322 1 1234331 123458999999876653
No 91
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=33.53 E-value=32 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHH----hCCcEEEEeCCccchhCCC
Q psy13183 7 DFDKKIKVLSEWID----KAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 7 ~~~~~l~~l~~~i~----~a~~ivv~tGAGiS~~sGi 39 (192)
.+.+.++++.++|. +.+.++|-+-||+|-++.+
T Consensus 68 ~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~sRS~~v 104 (161)
T 3emu_A 68 QLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAI 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHH
Confidence 33444555555554 4578999999999976543
No 92
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=32.72 E-value=35 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
.+.++.+.+.+++.++++|.+-||+|-++
T Consensus 104 ~~~~~fI~~~~~~g~~VLVHC~~G~sRS~ 132 (182)
T 2j16_A 104 PSLTSIIHAATTKREKILIHAQCGLSRSA 132 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCSHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCChHH
Confidence 34444455555566899999999999664
No 93
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=32.67 E-value=38 Score=23.73 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
+.+.++.+.+.+++.+.++|-+-||+|-++.
T Consensus 67 ~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~ 97 (144)
T 3s4e_A 67 FPECFEFIEEAKRKDGVVLVHSNAGVSRAAA 97 (144)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCchHHH
Confidence 3444555555555667999999999997653
No 94
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=31.87 E-value=56 Score=26.44 Aligned_cols=28 Identities=7% Similarity=0.252 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
++.+.+-.++++++.+.-..+||++|+|
T Consensus 71 ~~~i~~la~~I~~l~~~G~~vviV~GgG 98 (281)
T 3nwy_A 71 PDVVAQVARQIADVVRGGVQIAVVIGGG 98 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCh
Confidence 3445555677777777667899999887
No 95
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=31.01 E-value=30 Score=28.95 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=15.4
Q ss_pred HHHHHHHHcccCCEEEEEec
Q psy13183 171 DINMGDYNSSIADLSIIESK 190 (192)
Q Consensus 171 ~~~~a~~~~~~~DlllviGT 190 (192)
..+++.+.+.++|++||||.
T Consensus 215 RQ~av~~lA~~vD~miVVGg 234 (328)
T 3szu_A 215 RQEAVRALAEQAEVVLVVGS 234 (328)
T ss_dssp HHHHHHHHHHHCSEEEEECC
T ss_pred HHHHHHHHHHhCCEEEEeCC
Confidence 34455667788999999996
No 96
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.88 E-value=29 Score=21.29 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=24.7
Q ss_pred ccccccccCcccccccc-chhhhhccC--CCCCCCCCCCCCCCCCCcccce
Q psy13183 112 GNMYVDQCNKCERQFVR-KSATNSVGQ--KNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~~-~~~~~~~~~--~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
|++...+|..|++.... +..+...+. .+....|. .|+..|...
T Consensus 1 g~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~-----~C~~~L~~~ 46 (72)
T 1x61_A 1 GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCS-----TCRAQLRGQ 46 (72)
T ss_dssp CCSCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCS-----SSCCBCTTS
T ss_pred CCCCCCCCccCCCccCCCceEEEECCCeEcccCCccc-----ccCCcCCcC
Confidence 67778899999986543 222222211 12334454 888888544
No 97
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=30.46 E-value=18 Score=26.21 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCC
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG 44 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~ 44 (192)
.+..++|+++.+.+.+-.- ++|-|.|.-|+-|.||.
T Consensus 24 ~e~k~kiekaveava~e~~---vsgrgfs~fs~hpvfre 59 (175)
T 1aoc_A 24 TEIKDKIEKAVEAVAQESG---VSGRGFSIFSHHPVFRE 59 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSTTSGGGTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC---ccccceeeecCChhHhh
Confidence 3556789999888887555 48999999999999985
No 98
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=30.46 E-value=29 Score=28.70 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCCccchhCC------------CCCCCCCCCcc--cccccCCCCccccccc-CCCCCH
Q psy13183 9 DKKIKVLSEWIDK--AKHVVLHTGAGISTSAG------------IPDFRGPNGVW--TLEKKGIKPKVNISFD-DAVPTV 71 (192)
Q Consensus 9 ~~~l~~l~~~i~~--a~~ivv~tGAGiS~~sG------------ipdfr~~~g~~--~~~~~~~~p~~~~~~~-~~~P~~ 71 (192)
.+.++++++.|.+ +++|+ ++|.|-|..++ +|..-....-+ .....-........+. .-+...
T Consensus 39 ~~~i~~~~~~i~~~~~~~I~-i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t~e 117 (355)
T 2a3n_A 39 RQKAEQVADEIYQAGFSSLF-FASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKE 117 (355)
T ss_dssp HHHHHHHHHHHHHHCCSCEE-EEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCCHH
T ss_pred HHHHHHHHHHHHhCCCCEEE-EEEccHHHHHHHHHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCCHH
Confidence 3568889999988 77765 67999886543 33221100000 0000001112222232 233344
Q ss_pred HHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCc
Q psy13183 72 THMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 112 (192)
Q Consensus 72 ~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG 112 (192)
+-.++....+.|-....||.|.++-..+.- +.++.++.
T Consensus 118 ~~~a~~~ak~~Ga~vi~IT~~~~S~La~~a---d~~l~~~~ 155 (355)
T 2a3n_A 118 SVAIAEWCKAQGIRVVAITKNADSPLAQAA---TWHIPMRH 155 (355)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTSHHHHTC---SEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEEECCCCChhhHhC---CEEEEeCC
Confidence 556666666677666788888887665542 35555553
No 99
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=29.84 E-value=21 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=9.7
Q ss_pred CCcEEEEeCCccchhCCCCCCC
Q psy13183 22 AKHVVLHTGAGISTSAGIPDFR 43 (192)
Q Consensus 22 a~~ivv~tGAGiS~~sGipdfr 43 (192)
.+.+.|+||-|.....|.|..|
T Consensus 34 ~~~v~II~GkG~hS~~g~~~Lk 55 (82)
T 3fau_A 34 KPYLSVITGRGNHSQGGVARIK 55 (82)
T ss_dssp CCEEEEECCC---------CHH
T ss_pred ceEEEEEECCCCCCCCCcchHH
Confidence 3579999999976555655443
No 100
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.67 E-value=48 Score=23.17 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCcccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVR 128 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~ 128 (192)
...+...|+.|..|.+.|.+..+-..|- ...|+.. +.-..+.|..|++..+.
T Consensus 42 ~is~~TVYR~L~~L~e~Glv~~~~~~~~-----------~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 42 NIGLTTVYRTLQSMASSGLVDTLHTDTG-----------ESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCHHHHHHHHHHHHTTTSEEEEECTTS-----------CEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEEeCCC-----------ceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 4556678999999999998876654331 1234431 23456789999987654
No 101
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=29.46 E-value=35 Score=22.65 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=13.7
Q ss_pred CcEEEEeCCccchhCCCC
Q psy13183 23 KHVVLHTGAGISTSAGIP 40 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGip 40 (192)
+.+.|+||-|.....|.+
T Consensus 43 ~~v~IIhGkG~hS~~g~~ 60 (96)
T 2d9i_A 43 PYLSVITGRGNHSQGGVA 60 (96)
T ss_dssp SEEEEECCCSGGGTTCTT
T ss_pred eEEEEEECcCCCCCCCcc
Confidence 479999999986555544
No 102
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=29.36 E-value=26 Score=27.68 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKA-KHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a-~~ivv~tGAGiS~~s 37 (192)
.+.++.|+++++.| .+|.|+.|+|+..+.
T Consensus 162 ~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~N 191 (224)
T 2bdq_A 162 IENIKHIKALVEYANNRIEIMVGGGVTAEN 191 (224)
T ss_dssp GGGHHHHHHHHHHHTTSSEEEECSSCCTTT
T ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCHHH
Confidence 34567777777764 589999999998653
No 103
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=28.71 E-value=37 Score=30.02 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccch
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGIST 35 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~ 35 (192)
.+.+++++++|++ ++.||+.|.|...
T Consensus 211 ~~~i~~~~~~L~~-~rPvIl~G~g~~~ 236 (578)
T 3lq1_A 211 DSSIQKMVTECTG-KKGVFVVGPIDKK 236 (578)
T ss_dssp HHHHHHHHHHTTT-SCEEEEECSCCCT
T ss_pred hHHHHHHHHHhcc-CCeEEEECCCCCh
Confidence 3568999999999 9999999999863
No 104
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=27.76 E-value=35 Score=27.96 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHH--hCCcEEEEeCCccchhCCCCC---CCCCC-Cccc---------cc-c-cCCCCccccccc-CCCCC
Q psy13183 9 DKKIKVLSEWID--KAKHVVLHTGAGISTSAGIPD---FRGPN-GVWT---------LE-K-KGIKPKVNISFD-DAVPT 70 (192)
Q Consensus 9 ~~~l~~l~~~i~--~a~~ivv~tGAGiS~~sGipd---fr~~~-g~~~---------~~-~-~~~~p~~~~~~~-~~~P~ 70 (192)
.++|+++++.|. ++++ |+++|.|-|..+|..- |.... |+-. .. . .-........+. .-+-.
T Consensus 10 ~~~i~~~v~~i~~~~~~~-I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~ 88 (329)
T 3eua_A 10 NREVQAFLQDLKGKTIDH-VFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNTP 88 (329)
T ss_dssp CHHHHHHHHHHTTCCCCE-EEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCCH
T ss_pred HHHHHHHHHHHHHCCCCE-EEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCCH
Confidence 467889999998 5555 4778999997665321 00000 1100 00 0 000111222222 23334
Q ss_pred HHHHHHHHHHHcCCccEEEeccCcchhhhc
Q psy13183 71 VTHMAILELVNQGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 71 ~~H~~l~~l~~~g~~~~viTqNiD~L~~~a 100 (192)
.+-.++....+.|-....||.|.++-..+.
T Consensus 89 e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ 118 (329)
T 3eua_A 89 ETVKAAAFARGKGALTIAMTFKPESPLAQE 118 (329)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChHHHh
Confidence 455666666667777778888888766554
No 105
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=27.63 E-value=56 Score=22.72 Aligned_cols=31 Identities=35% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
.+.+.++.+.+.+++.+.++|-+-||+|-++
T Consensus 66 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 96 (144)
T 3ezz_A 66 WFMEAIEYIDAVKDCRGRVLVHSQAGISRSA 96 (144)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEESSSSSHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCChhH
Confidence 3444555555566666899999999998654
No 106
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=27.57 E-value=27 Score=26.41 Aligned_cols=30 Identities=10% Similarity=-0.062 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHcCCccEEEeccCcchhhh
Q psy13183 70 TVTHMAILELVNQGKVHYVVSQNIDGLHLR 99 (192)
Q Consensus 70 ~~~H~~l~~l~~~g~~~~viTqNiD~L~~~ 99 (192)
...-.++....+.|-....||.|-++-..+
T Consensus 128 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~ 157 (201)
T 3trj_A 128 ENILSAVEEAHDLEMKVIALTGGSGGALQN 157 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCGGGG
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHH
Confidence 344556666666777777888887765444
No 107
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=27.47 E-value=82 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
.+.+.++.+.+.+++.+.++|-+-||+|-+
T Consensus 74 ~~~~~~~~i~~~~~~~~~vlVHC~aG~~Rs 103 (151)
T 2img_A 74 QIDRFVQIVDEANARGEAVGVHCALGFGRT 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSSSSHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCChH
Confidence 344445555555556689999999999844
No 108
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=27.01 E-value=35 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 10 KKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 10 ~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
...++++++|++|+++||.-|=||.++-
T Consensus 18 ~~~~~~a~~l~~A~~ViIVPGYGmAVAq 45 (186)
T 2bru_C 18 ITAEETAELLKNSHSVIITPGYGMAVAQ 45 (186)
T ss_dssp --CHHHHHHHHHCSEEEEECSBHHHHTT
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHH
Confidence 3568999999999999999999998774
No 109
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=26.91 E-value=36 Score=26.03 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHh-----CCcEEEEeCCccchhC-----------CCCCCCCCCC-cccccccCCCC-ccccccc-CCCCC
Q psy13183 10 KKIKVLSEWIDK-----AKHVVLHTGAGISTSA-----------GIPDFRGPNG-VWTLEKKGIKP-KVNISFD-DAVPT 70 (192)
Q Consensus 10 ~~l~~l~~~i~~-----a~~ivv~tGAGiS~~s-----------Gipdfr~~~g-~~~~~~~~~~p-~~~~~~~-~~~P~ 70 (192)
+.+++++++|.+ +++| ++.|.|.|... |+|.+--.+. .+.......++ .....+. .-+..
T Consensus 42 ~~i~~~~~~i~~~a~~~a~~I-~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~ 120 (220)
T 3etn_A 42 DAYEKAVELIVEQIHRKKGKL-VTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTR 120 (220)
T ss_dssp THHHHHHHHHHHHTTTTCCCE-EEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCH
T ss_pred HHHHHHHHHHHhHhhccCCEE-EEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCH
Confidence 467888888988 6665 67899988653 3433221111 11000000111 1122222 22334
Q ss_pred HHHHHHHHHHH--cCCccEEEeccCcchhhhc
Q psy13183 71 VTHMAILELVN--QGKVHYVVSQNIDGLHLRS 100 (192)
Q Consensus 71 ~~H~~l~~l~~--~g~~~~viTqNiD~L~~~a 100 (192)
..-.++..+.+ .|-..-.||.|-+.-..+.
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~ 152 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASE 152 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHHh
Confidence 45566666666 7877788999888755443
No 110
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=26.61 E-value=71 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
+.+.+-.+.++++.+.-.++|++.|+|-
T Consensus 31 ~~i~~~a~~I~~l~~~G~~vVlVhGgG~ 58 (247)
T 2a1f_A 31 AILDRMAVEIKELVEMGVEVSVVLGGGN 58 (247)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCh
Confidence 4455555666665555568999999864
No 111
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=26.37 E-value=75 Score=24.37 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
+.+.+-.+.++++.+.-.++|+..|+|
T Consensus 30 ~~~~~~~~~i~~l~~~g~~vviV~GgG 56 (239)
T 1ybd_A 30 DTIVQTVGEIAEVVKMGVQVGIVVGGG 56 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCc
Confidence 445555666666665557899999986
No 112
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=26.27 E-value=34 Score=25.86 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCC---cEEEEeCCccchh
Q psy13183 12 IKVLSEWIDKAK---HVVLHTGAGISTS 36 (192)
Q Consensus 12 l~~l~~~i~~a~---~ivv~tGAGiS~~ 36 (192)
.+++.+++++++ .=||++|||+++.
T Consensus 52 p~~l~~~~~~a~~~g~~ViIa~AG~aa~ 79 (170)
T 1xmp_A 52 PDYMFEYAETARERGLKVIIAGAGGAAH 79 (170)
T ss_dssp HHHHHHHHHHTTTTTCCEEEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCchhh
Confidence 355566666542 3489999999743
No 113
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=26.17 E-value=83 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
+.+.+-.++++++.+.-..+|+++|+|
T Consensus 32 ~~i~~la~~i~~l~~~G~~vviV~gGG 58 (243)
T 3ek6_A 32 KVINRLAHEVIEAQQAGAQVALVIGGG 58 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECST
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 344444566666655557888899876
No 114
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=26.11 E-value=36 Score=29.97 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=14.9
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|++
T Consensus 271 ~~~~~~~~aDlvl~iG~~ 288 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSS 288 (556)
T ss_dssp HHHHHHTTCSEEEEESBC
T ss_pred hhhhcccCCCEEEEcCCC
Confidence 456678899999999985
No 115
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=26.01 E-value=98 Score=21.51 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+.++.+.+.+++.+.++|.+.||+|-+.
T Consensus 69 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RSg 98 (149)
T 1zzw_A 69 FEEAFEFIEEAHQCGKGLLIHCQAGVSRSA 98 (149)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCCCCHHH
Confidence 334444455555556899999999998553
No 116
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.64 E-value=39 Score=24.13 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeCc-cccccccCcccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHG-NMYVDQCNKCERQFVR 128 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elHG-~~~~~~C~~C~~~~~~ 128 (192)
...+...|+.|..|.+.|.+..+-..|- ...|++.. .-..+.|..||+..+.
T Consensus 53 ~is~aTVYR~L~~L~e~Glv~~~~~~~~-----------~~~Y~~~~~~H~HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRESGLVKELTYGDA-----------SSRFDFVTSDHYHAICENCGKIVDF 105 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTS-----------CCEEEECCCCEEEEEETTTCCEEEC
T ss_pred CCChhhHHHHHHHHHHCCCEEEEeeCCC-----------ceEEECCCCCcceEEECCCCCEEEe
Confidence 4566678999999999998876654331 12233211 1235899999987654
No 117
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=25.52 E-value=30 Score=28.64 Aligned_cols=45 Identities=29% Similarity=0.528 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH----HHhCCcEEEEeCCccchh--------CCCCCCCCCCCccc
Q psy13183 6 EDFDKKIKVLSEW----IDKAKHVVLHTGAGISTS--------AGIPDFRGPNGVWT 50 (192)
Q Consensus 6 ~~~~~~l~~l~~~----i~~a~~ivv~tGAGiS~~--------sGipdfr~~~g~~~ 50 (192)
+.+...++++... |...+.||+.+|.|+++. .|+++-|--+|-|.
T Consensus 255 e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWs 311 (327)
T 3utn_X 255 EAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWT 311 (327)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHH
Confidence 3444444444332 223578999999999875 68876554466675
No 118
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=25.35 E-value=77 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
+.+.+-.+.++++.+.-.++|++.|+|
T Consensus 30 ~~~~~~a~~I~~l~~~G~~vVlVhGgG 56 (252)
T 1z9d_A 30 PTVQAIAKEIAEVHVSGVQIALVIGGG 56 (252)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 445555566666655556899999886
No 119
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=25.20 E-value=91 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccchh
Q psy13183 6 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 36 (192)
Q Consensus 6 ~~~~~~l~~l~~~i~~a~~ivv~tGAGiS~~ 36 (192)
+.+.+-++.+.+++++...++|-+-||+|-+
T Consensus 72 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 102 (150)
T 4erc_A 72 DQIDRFVQIVDEANARGEAVGVHCALGFGRT 102 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSSSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 3444555566666666689999999999844
No 120
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.08 E-value=25 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=13.4
Q ss_pred CccccccccCccccccccch
Q psy13183 111 HGNMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 111 HG~~~~~~C~~C~~~~~~~~ 130 (192)
|-.-....|..|++.|....
T Consensus 9 H~~~k~~~C~~C~k~F~~~~ 28 (62)
T 1vd4_A 9 STNRASFKCPVCSSTFTDLE 28 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHH
T ss_pred cCCCCCccCCCCCchhccHH
Confidence 43344578999999876543
No 121
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=25.07 E-value=1e+02 Score=21.91 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
.+.++.+.+.+++.+.++|.+-||+|-+.
T Consensus 76 ~~~~~~i~~~~~~~~~VlVHC~aG~~RSg 104 (164)
T 2hcm_A 76 EPTCAAMEAAVRDGGSCLVYCKNGRSRSA 104 (164)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSSHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCchHH
Confidence 33444455555556899999999998654
No 122
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=25.07 E-value=40 Score=25.54 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
..++++++|++|+++||.-|=||.++-
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAq 38 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQ 38 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHT
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHH
Confidence 357899999999999999999999874
No 123
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.88 E-value=23 Score=24.40 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=8.0
Q ss_pred cccCcccccccc
Q psy13183 117 DQCNKCERQFVR 128 (192)
Q Consensus 117 ~~C~~C~~~~~~ 128 (192)
..|+.|+.+..+
T Consensus 33 ~~CP~Cq~eL~~ 44 (101)
T 2jne_A 33 LHCPQCQHVLDQ 44 (101)
T ss_dssp CBCSSSCSBEEE
T ss_pred ccCccCCCccee
Confidence 677777766544
No 124
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=24.83 E-value=32 Score=26.29 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHhC---CcEEEEeCCccchh
Q psy13183 13 KVLSEWIDKA---KHVVLHTGAGISTS 36 (192)
Q Consensus 13 ~~l~~~i~~a---~~ivv~tGAGiS~~ 36 (192)
+++.++++++ ..-||++|||+++.
T Consensus 64 ~~l~~~~~~a~~~g~~ViIa~AG~aah 90 (181)
T 4b4k_A 64 DYMFEYAETARERGLKVIIAGAGGAAH 90 (181)
T ss_dssp HHHHHHHHHTTTTTCCEEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCceEEEEecccccc
Confidence 4555666654 34689999999854
No 125
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=24.79 E-value=91 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAG 32 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAG 32 (192)
++.+..-.++++++.+.-..+|+..|+|
T Consensus 29 ~~~i~~~a~~I~~l~~~G~~vvlV~gGG 56 (240)
T 4a7w_A 29 IHVLDHIAKEIKSLVENDIEVGIVIGGG 56 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4445555666776666667888889886
No 126
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=24.78 E-value=69 Score=22.29 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhCC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAG 38 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~sG 38 (192)
.+.++.+.+.+++.+.++|.+-||+|-++.
T Consensus 68 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~ 97 (145)
T 2nt2_A 68 NDTYKFISKAKKHGSKCLVHSKMGVSRSAS 97 (145)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCchHHH
Confidence 344445555555568999999999997653
No 127
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=24.63 E-value=73 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCCC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 39 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGi 39 (192)
+.+.|.++.+.+....++||+||+|=.=.+|.
T Consensus 33 ~~~~L~~al~~~~~d~~~vvltg~g~~F~aG~ 64 (232)
T 3ot6_A 33 VIIAFNAALDQAEKDRAIVIVTGQPGILSGGY 64 (232)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECBTEEEECCB
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCccCCc
Confidence 33444444444444468999999984444443
No 128
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=24.32 E-value=84 Score=18.63 Aligned_cols=21 Identities=19% Similarity=0.435 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCc
Q psy13183 4 SKEDFDKKIKVLSEWIDKAKH 24 (192)
Q Consensus 4 ~~~~~~~~l~~l~~~i~~a~~ 24 (192)
+.+++..+++++..++..|++
T Consensus 5 ~~eeL~~DL~El~~Ll~~AkR 25 (50)
T 2a26_A 5 ASEELQKDLEEVKVLLEKATR 25 (50)
T ss_dssp CHHHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHHHHHHHhcc
Confidence 346788899999999998864
No 129
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=24.32 E-value=72 Score=24.74 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCccc
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 34 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAGiS 34 (192)
.+.+.+-.+.++++.+. .++|+..|.|++
T Consensus 21 ~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~ 49 (251)
T 2ako_A 21 FERLKNLVAFLAKLMEK-YEVILVTSAAIS 49 (251)
T ss_dssp HHHHHHHHHHHHHHHHH-SEEEEEECCHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEECCHHH
Confidence 44555666777777677 789999888855
No 130
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=24.08 E-value=43 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
..++++++|++|+++||.-|=||.++-
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAq 37 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAK 37 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTT
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHH
Confidence 367899999999999999999999874
No 131
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=24.04 E-value=55 Score=23.31 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=13.8
Q ss_pred CcEEEEeCCccchhCCCCC
Q psy13183 23 KHVVLHTGAGISTSAGIPD 41 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGipd 41 (192)
+.+.|+||-|.....|.|.
T Consensus 88 ~~v~IIhGkG~hS~~g~~~ 106 (135)
T 2vkc_A 88 PYLSVITGRGNHSQGGVAR 106 (135)
T ss_dssp SEEEEECCSCSSSCCSCCT
T ss_pred eEEEEEECCCcCCCCCCch
Confidence 4699999999865555443
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.94 E-value=43 Score=20.41 Aligned_cols=43 Identities=14% Similarity=0.410 Sum_probs=23.8
Q ss_pred ccccccccCccccccccc-hhhhhccC--CCCCCCCCCCCCCCCCCcccce
Q psy13183 112 GNMYVDQCNKCERQFVRK-SATNSVGQ--KNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~~~-~~~~~~~~--~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
|+++...|..|++..... ..+...+. .+..-.|. .|+..|...
T Consensus 1 g~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~-----~C~~~L~~~ 46 (72)
T 1x4k_A 1 GSSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICH-----RCQQPIGTK 46 (72)
T ss_dssp CCSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCS-----SSCCCCCSS
T ss_pred CCccCCCCccCCCcccCCceEEEECcCeecccCCccc-----ccCCccCCC
Confidence 566777899998865432 22221111 23334454 788777655
No 133
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.80 E-value=28 Score=21.23 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=21.2
Q ss_pred cccCccccc-cccchhhhhccCCCCCCCCCCCCCCCCCCcccceEEECC
Q psy13183 117 DQCNKCERQ-FVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWE 164 (192)
Q Consensus 117 ~~C~~C~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~lrP~Vv~fg 164 (192)
..|+.|+.. ...+. ....-.|. .||-.+.-+++..|
T Consensus 12 ~~Cp~C~~~~lv~D~-------~~ge~vC~-----~CGlVl~e~~iD~g 48 (58)
T 1dl6_A 12 VTCPNHPDAILVEDY-------RAGDMICP-----ECGLVVGDRVIDVG 48 (58)
T ss_dssp CSBTTBSSSCCEECS-------SSCCEECT-----TTCCEECCSCCCCC
T ss_pred ccCcCCCCCceeEeC-------CCCeEEeC-----CCCCEEeccccccC
Confidence 379999863 21111 11123576 89988877776554
No 134
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.79 E-value=41 Score=20.42 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=23.6
Q ss_pred ccccccccCccccccccchhhhhccC--CCCCCCCCCCCCCCCCCcccce
Q psy13183 112 GNMYVDQCNKCERQFVRKSATNSVGQ--KNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
|++....|..|++....+. +...+. .+..-.|. .|+..|...
T Consensus 1 g~~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~-----~C~~~L~~~ 44 (70)
T 2d8z_A 1 GSSGSSGCVQCKKPITTGG-VTYREQPWHKECFVCT-----ACRKQLSGQ 44 (70)
T ss_dssp CCCCCCBCSSSCCBCCSSE-EESSSSEEETTTSBCS-----SSCCBCTTS
T ss_pred CCCCCCCCcccCCeeccce-EEECccccCCCCCccC-----CCCCcCCcC
Confidence 6777788999998764332 211111 12333444 788777543
No 135
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=23.78 E-value=64 Score=23.87 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
.+.++.+.+.+++.+.++|.+-||+|-++
T Consensus 84 ~~~~~fI~~~~~~~~~VLVHC~aG~sRS~ 112 (188)
T 2esb_A 84 DPIADHIHSVEMKQGRTLLHCAAGVSRSA 112 (188)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCchHH
Confidence 34445555555567899999999998654
No 136
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=23.41 E-value=35 Score=25.66 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHHhC---CcEEEEeCCccchh
Q psy13183 13 KVLSEWIDKA---KHVVLHTGAGISTS 36 (192)
Q Consensus 13 ~~l~~~i~~a---~~ivv~tGAGiS~~ 36 (192)
+++.++++++ ..-||++|||+++.
T Consensus 47 ~~l~~~~~~~~~~g~~ViIa~AG~aa~ 73 (166)
T 3oow_A 47 DKMFDYAETAKERGLKVIIAGAGGAAH 73 (166)
T ss_dssp HHHHHHHHHTTTTTCCEEEEEECSSCC
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcchh
Confidence 4455555544 35799999999844
No 137
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=23.04 E-value=99 Score=22.45 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+.++.+.+.+++.+.++|.+-||+|-+.
T Consensus 73 ~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg 102 (177)
T 2oud_A 73 FEEAFEFIEEAHQCGKGLLIHCQAGVSRSA 102 (177)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCCchH
Confidence 333444455555556899999999998654
No 138
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=22.98 E-value=45 Score=29.02 Aligned_cols=18 Identities=6% Similarity=-0.160 Sum_probs=14.8
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|++
T Consensus 259 ~~~~~l~~aDlvl~iG~~ 276 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAP 276 (528)
T ss_dssp HHHHHHTTCSEEEEESSC
T ss_pred HHHHHHhcCCEEEEECCC
Confidence 455678899999999974
No 139
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=22.96 E-value=29 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHcccCCEEEEEecC
Q psy13183 176 DYNSSIADLSIIESKR 191 (192)
Q Consensus 176 ~~~~~~~DlllviGTS 191 (192)
.+.+++||++|++|++
T Consensus 265 ~~~l~~aDlvl~iG~~ 280 (564)
T 2q28_A 265 SFALANADVVMLVGAR 280 (564)
T ss_dssp HHHHHHCSEEEEESCC
T ss_pred HhHhhcCCEEEEECCc
Confidence 4567889999999974
No 140
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=22.85 E-value=43 Score=25.59 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCC---cEEEEeCCccchh
Q psy13183 12 IKVLSEWIDKAK---HVVLHTGAGISTS 36 (192)
Q Consensus 12 l~~l~~~i~~a~---~ivv~tGAGiS~~ 36 (192)
.+++.+++++++ .=||++|||+++.
T Consensus 62 p~~l~~~~~~a~~~g~~ViIa~AG~aa~ 89 (182)
T 1u11_A 62 PDRLADYARTAAERGLNVIIAGAGGAAH 89 (182)
T ss_dssp HHHHHHHHHHTTTTTCCEEEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 355566666542 3489999999743
No 141
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.81 E-value=41 Score=25.82 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=11.5
Q ss_pred ccccccCccccccc
Q psy13183 114 MYVDQCNKCERQFV 127 (192)
Q Consensus 114 ~~~~~C~~C~~~~~ 127 (192)
...++|..||..|.
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 45789999998875
No 142
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.73 E-value=61 Score=20.29 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=17.7
Q ss_pred ccccCccccccccchhhhhccCCCCCCCCCCCCCCCCCCcc
Q psy13183 116 VDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156 (192)
Q Consensus 116 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~~~~Cgg~l 156 (192)
...|..|+.+...+. ...-+|+ .||..+
T Consensus 21 ~Y~C~~Cg~~~~l~~--------~~~iRC~-----~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQA--------KEVIRCR-----ECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCS--------SSCCCCS-----SSCCCC
T ss_pred EEECCCCCCeeecCC--------CCceECC-----CCCcEE
Confidence 367999998875331 1234676 899643
No 143
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=22.67 E-value=24 Score=25.79 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=9.9
Q ss_pred ccccccccCcccccc
Q psy13183 112 GNMYVDQCNKCERQF 126 (192)
Q Consensus 112 G~~~~~~C~~C~~~~ 126 (192)
|.+.-.+|..|++.+
T Consensus 43 g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 43 NKIIGSKCSKCGRIF 57 (145)
T ss_dssp TCCEEEECTTTCCEE
T ss_pred CEEEEEEECCCCcEE
Confidence 445556788888764
No 144
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=22.63 E-value=74 Score=23.67 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=11.6
Q ss_pred CcEEEEeCCccchh
Q psy13183 23 KHVVLHTGAGISTS 36 (192)
Q Consensus 23 ~~ivv~tGAGiS~~ 36 (192)
..-||++|||+++.
T Consensus 58 ~~~ViIa~AG~aa~ 71 (159)
T 3rg8_A 58 RPKLYITIAGRSNA 71 (159)
T ss_dssp SCEEEEEECCSSCC
T ss_pred CCcEEEEECCchhh
Confidence 36899999999854
No 145
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.61 E-value=31 Score=25.37 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHcCCccEEEeccCcchhhhcCCCCCceEEeC--ccccccccCccccccccc
Q psy13183 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 66 ~~~P~~~H~~l~~l~~~g~~~~viTqNiD~L~~~aG~~~~~v~elH--G~~~~~~C~~C~~~~~~~ 129 (192)
...+...|+.|..|.+.|.+..+-..+ | ...|++- ..-..+.|..||+....+
T Consensus 66 ~is~aTVYRtL~~L~e~Glv~~i~~~~--------~---~~~Y~~~~~~~H~HliC~~CG~v~e~~ 120 (162)
T 4ets_A 66 NVGIATVYRTLNLLEEAEMVTSISFGS--------A---GKKYELANKPHHDHMICKNCGKIIEFE 120 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECC----------------CCEEECCCCCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeCC--------C---ceEEEeCCCCCccEEEECCCCCEEEec
Confidence 456677899999999998876543321 1 1123332 223458999999976543
No 146
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=22.58 E-value=68 Score=22.76 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 12 IKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 12 l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
++.+.+.+++.+.++|-+-||+|-+.
T Consensus 75 ~~fi~~~~~~~~~VlVHC~~G~~RS~ 100 (155)
T 2hxp_A 75 IEFIDEALSQNCGVLVHSLAGVSRSV 100 (155)
T ss_dssp HHHHHHHHHTTCEEEEECSSSSSHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCchhH
Confidence 33444444455799999999998654
No 147
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=22.56 E-value=93 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
.+.+....+.++++.+.-.++|+..|+|-
T Consensus 34 ~~~i~~~a~~I~~l~~~G~~vViV~GgG~ 62 (255)
T 2jjx_A 34 SKRLEHIANEILSIVDLGIEVSIVIGGGN 62 (255)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECchH
Confidence 34445555566655555567899999963
No 148
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=22.24 E-value=79 Score=22.83 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=21.7
Q ss_pred eEEECCCCCCHHHHHHHHHHcccCCEEEEEecCC
Q psy13183 159 TILDWEHNLPQKDINMGDYNSSIADLSIIESKRG 192 (192)
Q Consensus 159 ~Vv~fge~~p~~~~~~a~~~~~~~DlllviGTSg 192 (192)
++..|.+ .++..+.+.+.++.-|++|+.|+-+
T Consensus 118 ~~~~~~d--~~eai~~~~~~~~~gDvVLv~Gsg~ 149 (163)
T 3mvn_A 118 PAISADD--VDELVMRIVQQAKPNDHILIMSNGA 149 (163)
T ss_dssp CEEEESS--HHHHHHHHHHHCCTTCEEEEECSSC
T ss_pred CeEEECC--HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4444433 2445667777788889999999753
No 149
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=22.22 E-value=57 Score=21.37 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe
Q psy13183 5 KEDFDKKIKVLSEWIDKAKHVVLHT 29 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a~~ivv~t 29 (192)
..+++++++++.+.|++.+.+|++.
T Consensus 33 E~sL~~kv~qv~~qL~~GeavIvfs 57 (78)
T 1y0n_A 33 ETPLDVRVERARHALRRGEAVILFD 57 (78)
T ss_dssp -CCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEC
Confidence 4567889999999999988888874
No 150
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=22.18 E-value=42 Score=29.43 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=14.0
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 259 ~~~~~~~aDlvl~iG~~ 275 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQ 275 (549)
T ss_dssp HHHHHHHCSEEEEESCC
T ss_pred HHHHHHhCCEEEEECCC
Confidence 44667899999999985
No 151
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=22.14 E-value=1.2e+02 Score=20.92 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhC--CcEEEEeCCccchh
Q psy13183 5 KEDFDKKIKVLSEWIDKA--KHVVLHTGAGISTS 36 (192)
Q Consensus 5 ~~~~~~~l~~l~~~i~~a--~~ivv~tGAGiS~~ 36 (192)
.+.+.+-++.+.+++++. ..++|-+-||+|-+
T Consensus 77 ~~~~~~~~~~i~~~~~~~~~~~vlVHC~aG~~Rt 110 (159)
T 1rxd_A 77 NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRA 110 (159)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEECSSSSTTH
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHH
Confidence 444555566666666543 68999999998844
No 152
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=22.12 E-value=1e+02 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCcc
Q psy13183 7 DFDKKIKVLSEWIDKAKHVVLHTGAGI 33 (192)
Q Consensus 7 ~~~~~l~~l~~~i~~a~~ivv~tGAGi 33 (192)
.+.+-.+.++++.+...++|+..|||-
T Consensus 19 ~~~~~~~~i~~l~~~g~~vvlV~ggG~ 45 (226)
T 2j4j_A 19 NLIVLRQSIKELADNGFRVGIVTGGGS 45 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECcch
Confidence 334444455544444568999999863
No 153
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=22.12 E-value=96 Score=22.42 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
+.+.++.+.+.+++.+.++|.+-||+|-+.
T Consensus 94 ~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg 123 (176)
T 3cm3_A 94 FDDVTAFLSKCDQRNEPVLVHSAAGVNRSG 123 (176)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHHHCCCcEEEECCcCCCHHH
Confidence 344555556666667899999999998553
No 154
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=22.06 E-value=31 Score=30.39 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=13.2
Q ss_pred HHHcccCCEEEEEecC
Q psy13183 176 DYNSSIADLSIIESKR 191 (192)
Q Consensus 176 ~~~~~~~DlllviGTS 191 (192)
.+.+++||++|++|++
T Consensus 267 ~~~l~~aDlvl~iG~~ 282 (568)
T 2c31_A 267 AFALAQCDVCVLIGAR 282 (568)
T ss_dssp HHHHHHCSEEEEESCC
T ss_pred HhhhccCCEEEEECCC
Confidence 4567889999999974
No 155
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=21.93 E-value=46 Score=29.19 Aligned_cols=17 Identities=18% Similarity=-0.040 Sum_probs=14.0
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 272 ~~~~l~~aDlvl~iG~~ 288 (563)
T 2vk8_A 272 VKEAVESADLILSVGAL 288 (563)
T ss_dssp HHHHHHTCSEEEEESCC
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45667899999999974
No 156
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=21.80 E-value=43 Score=29.82 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.1
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 270 ~~~~l~~aDlvl~iG~~ 286 (603)
T 4feg_A 270 ANEALAQADVVLFVGNN 286 (603)
T ss_dssp HHHHHHHCSEEEEESCC
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45667899999999985
No 157
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.78 E-value=52 Score=19.86 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=23.7
Q ss_pred ccccccccCccccccccchhhhhcc--CCCCCCCCCCCCCCCCCCcccce
Q psy13183 112 GNMYVDQCNKCERQFVRKSATNSVG--QKNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 112 G~~~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
|++....|..|++....+. +...+ ..+..-.|. .|+..|...
T Consensus 1 ~s~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~-----~C~~~L~~~ 44 (69)
T 2cur_A 1 GSSGSSGCVKCNKAITSGG-ITYQDQPWHADCFVCV-----TCSKKLAGQ 44 (69)
T ss_dssp CCCCCCCCSSSCCCCCTTC-EEETTEEECTTTTBCT-----TTCCBCTTS
T ss_pred CCCCcCCCcccCCEeCcce-EEECccccccCcCEEC-----CCCCCCCCC
Confidence 5677788999998764322 21111 112334454 788777543
No 158
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=21.58 E-value=1e+02 Score=24.20 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=12.3
Q ss_pred CcEEEEeCCccchhCCC
Q psy13183 23 KHVVLHTGAGISTSAGI 39 (192)
Q Consensus 23 ~~ivv~tGAGiS~~sGi 39 (192)
-++||+||+|=.=.+|.
T Consensus 50 vr~vVltg~g~~FcaG~ 66 (258)
T 4fzw_A 50 ISVCVITGNARFFAAGA 66 (258)
T ss_dssp CCEEEEECCSSEEEECB
T ss_pred eEEEEEeCCCCceeCCC
Confidence 37999999985444554
No 159
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=21.20 E-value=48 Score=28.96 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=14.5
Q ss_pred HHHHHcccCCEEEEEecC
Q psy13183 174 MGDYNSSIADLSIIESKR 191 (192)
Q Consensus 174 ~a~~~~~~~DlllviGTS 191 (192)
.+.+.+++||++|++|+.
T Consensus 269 ~~~~~l~~aD~vl~iG~~ 286 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTR 286 (552)
T ss_dssp HHHHHHHTSSEEEEESCC
T ss_pred HHHHHHHhCCEEEEECCC
Confidence 355677899999999974
No 160
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.10 E-value=89 Score=16.76 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.7
Q ss_pred cccccccCccccccccch
Q psy13183 113 NMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 113 ~~~~~~C~~C~~~~~~~~ 130 (192)
.-....|..|++.|....
T Consensus 9 ~~k~~~C~~C~k~f~~~~ 26 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVY 26 (48)
T ss_dssp CCCSEEETTTTEEESSHH
T ss_pred CCcCeeCCCCCcccCCHH
Confidence 344578999999876544
No 161
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=21.05 E-value=1.1e+02 Score=21.85 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHH-HhCCcEEEEeCC
Q psy13183 3 DSKEDFDKKIKVLSEWI-DKAKHVVLHTGA 31 (192)
Q Consensus 3 d~~~~~~~~l~~l~~~i-~~a~~ivv~tGA 31 (192)
++++++.++++++.+-+ .+.+-++|+|==
T Consensus 41 ~~~~~~~~~i~~~i~~~~~~~~gvliLtDl 70 (144)
T 3lfh_A 41 DNIEVVRKEVEKIIKEKLQEDKEIIIVVDL 70 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHhhCCCCcEEEEEeC
Confidence 45667777777777666 666889998753
No 162
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=34 Score=17.39 Aligned_cols=19 Identities=16% Similarity=0.334 Sum_probs=12.8
Q ss_pred CccccccccCccccccccc
Q psy13183 111 HGNMYVDQCNKCERQFVRK 129 (192)
Q Consensus 111 HG~~~~~~C~~C~~~~~~~ 129 (192)
|-.-....|..|++.|...
T Consensus 4 H~~~k~~~C~~C~k~f~~~ 22 (37)
T 2elm_A 4 GSSGHLYYCSQCHYSSITK 22 (37)
T ss_dssp SSSSCEEECSSSSCEEECH
T ss_pred cCCCcCeECCCCCcccCCH
Confidence 4444557899999887643
No 163
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=20.88 E-value=47 Score=30.39 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=23.6
Q ss_pred CCCCCCCcccceEEECCC-CC-CHHHHHHHHHHcccCCEEEEEecC
Q psy13183 148 GFRPCRGTLHDTILDWEH-NL-PQKDINMGDYNSSIADLSIIESKR 191 (192)
Q Consensus 148 ~~~~Cgg~lrP~Vv~fge-~~-p~~~~~~a~~~~~~~DlllviGTS 191 (192)
.|+.||=.+. .+.+. .. .++.+++|.+.+++-.++++=|-+
T Consensus 91 aCp~CGP~l~---~l~~~~~~~~~~~i~~aa~~L~~G~IVa~pt~g 133 (657)
T 3ttc_A 91 ACPECGPYLE---WVSHGEHAEQEAALQAAIAQLKMGNIVAIKGIG 133 (657)
T ss_dssp CCTTTSCCEE---EEETTEEEEHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCcccCccce---EeecCCCCcchHHHHHHHHHHHcCCEEEEECCc
Confidence 4779984431 11111 11 134677788888887777765543
No 164
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=20.76 E-value=1e+02 Score=23.58 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccchhCCCCCCCCCCCcccccccCCCCcccccc-----cCCCCCHHHH-HHHHHHH
Q psy13183 8 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISF-----DDAVPTVTHM-AILELVN 81 (192)
Q Consensus 8 ~~~~l~~l~~~i~~a~~ivv~tGAGiS~~sGipdfr~~~g~~~~~~~~~~p~~~~~~-----~~~~P~~~H~-~l~~l~~ 81 (192)
+.+.++.+.+.+++.+.++|.+-||+|.+.-+= -.|-+...+.+.+.-+.+ ..+.||.++. .|.++++
T Consensus 69 ~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv------~AYLm~~~g~s~~eAl~~vr~~Rp~i~pN~~f~~qL~~~e~ 142 (211)
T 2g6z_A 69 FQEAIDFIDCVREKGGKVLVHSEAGISRSPTIC------MAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQYES 142 (211)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHH------HHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHH------HHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 444455555555567899999999998654220 012222222222211111 2467898764 6777766
No 165
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=20.76 E-value=1.1e+02 Score=21.29 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 9 ~~~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
.+.++.+.+.+++.+.++|.+.||+|-+.
T Consensus 77 ~~~~~~i~~~~~~~~~vlvHC~aG~~RS~ 105 (154)
T 2r0b_A 77 PMTKEFIDGSLQMGGKVLVHGNAGISRSA 105 (154)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCChHH
Confidence 33345555555566899999999998553
No 166
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=20.52 E-value=74 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=11.2
Q ss_pred CCcEEEEeCCccchh
Q psy13183 22 AKHVVLHTGAGISTS 36 (192)
Q Consensus 22 a~~ivv~tGAGiS~~ 36 (192)
...=||++|||+++.
T Consensus 60 ~g~~ViIa~AG~aa~ 74 (169)
T 3trh_A 60 RGCAVFIAAAGLAAH 74 (169)
T ss_dssp TTEEEEEEEECSSCC
T ss_pred CCCcEEEEECChhhh
Confidence 344599999999843
No 167
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.45 E-value=47 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=14.9
Q ss_pred HHHHHHHHhC---CcEEEEeCCccchh
Q psy13183 13 KVLSEWIDKA---KHVVLHTGAGISTS 36 (192)
Q Consensus 13 ~~l~~~i~~a---~~ivv~tGAGiS~~ 36 (192)
+++.++++++ ..-||++|||+++.
T Consensus 54 ~~l~~~~~~a~~~g~~ViIa~AG~aah 80 (173)
T 4grd_A 54 DEMFDYAEKARERGLRAIIAGAGGAAH 80 (173)
T ss_dssp HHHHHHHHHHTTTTCSEEEEEEESSCC
T ss_pred HHHHHHHHHHHhcCCeEEEEecccccc
Confidence 3444444443 33488999999854
No 168
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=20.39 E-value=55 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccchhC
Q psy13183 11 KIKVLSEWIDKAKHVVLHTGAGISTSA 37 (192)
Q Consensus 11 ~l~~l~~~i~~a~~ivv~tGAGiS~~s 37 (192)
..++++++|++|+++||.-|=||.++-
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAq 61 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQ 61 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHT
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHH
Confidence 367889999999999999999999874
No 169
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.38 E-value=78 Score=19.12 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=22.4
Q ss_pred cccccccCccccccccc-hhhhhccC--CCCCCCCCCCCCCCCCCcccce
Q psy13183 113 NMYVDQCNKCERQFVRK-SATNSVGQ--KNLNIPCPYRGFRPCRGTLHDT 159 (192)
Q Consensus 113 ~~~~~~C~~C~~~~~~~-~~~~~~~~--~~~~~~C~~~~~~~Cgg~lrP~ 159 (192)
.++...|..|++..... ..+...+. .+..-.|. .|+..|...
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~-----~C~~~L~~~ 46 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCS-----GCEQPLGSR 46 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCT-----TTCCBTTTS
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeEC-----CCCCcCCCC
Confidence 45567898998875532 22222211 12233444 788777654
No 170
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=20.27 E-value=52 Score=28.94 Aligned_cols=17 Identities=6% Similarity=-0.289 Sum_probs=13.9
Q ss_pred HHHHcccCCEEEEEecC
Q psy13183 175 GDYNSSIADLSIIESKR 191 (192)
Q Consensus 175 a~~~~~~~DlllviGTS 191 (192)
+.+.+++||++|++|++
T Consensus 283 ~~~~l~~aDlvl~iG~~ 299 (565)
T 2nxw_A 283 ITRLVEESDGLFLLGAI 299 (565)
T ss_dssp HHHHHHTCSEEEEESCC
T ss_pred HHHHHHhCCEEEEECCC
Confidence 45667889999999974
No 171
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=20.13 E-value=52 Score=25.11 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCC---cEEEEeCCccchh
Q psy13183 12 IKVLSEWIDKAK---HVVLHTGAGISTS 36 (192)
Q Consensus 12 l~~l~~~i~~a~---~ivv~tGAGiS~~ 36 (192)
.+++.++++++. .=||++|||+++.
T Consensus 54 p~~l~~~~~~a~~~g~~ViIa~AG~aa~ 81 (183)
T 1o4v_A 54 PDRMFEYAKNAEERGIEVIIAGAGGAAH 81 (183)
T ss_dssp HHHHHHHHHHTTTTTCCEEEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCcccc
Confidence 345566666542 3489999999744
No 172
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.10 E-value=1.1e+02 Score=16.02 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=14.9
Q ss_pred eCccccccccCccccccccch
Q psy13183 110 LHGNMYVDQCNKCERQFVRKS 130 (192)
Q Consensus 110 lHG~~~~~~C~~C~~~~~~~~ 130 (192)
.|-.-....|..|++.+....
T Consensus 6 ~H~~~k~~~C~~C~k~F~~~~ 26 (46)
T 2ytn_A 6 SGTGKKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CCSCCSSCBCTTTCCBCSSHH
T ss_pred CCCCCcCeECCCCCCeeCCHH
Confidence 354555678999999886544
No 173
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.08 E-value=68 Score=23.53 Aligned_cols=22 Identities=9% Similarity=-0.092 Sum_probs=15.4
Q ss_pred HHHHHHHHcc--cCCEEEEEecCC
Q psy13183 171 DINMGDYNSS--IADLSIIESKRG 192 (192)
Q Consensus 171 ~~~~a~~~~~--~~DlllviGTSg 192 (192)
..+...++++ ++|++|+.|-+|
T Consensus 60 i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 60 IQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp HHHHHHHHHTCTTCSEEEEECCCS
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCC
Confidence 3444456666 799999998554
Done!