RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13183
(192 letters)
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 209 bits (534), Expect = 2e-69
Identities = 77/165 (46%), Positives = 103/165 (62%), Gaps = 6/165 (3%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEK-KGIKPKVNISFDDAVPTVTHMAILELVN 81
KH+V+ TGAGISTSAGIPDFRGPNGVWTL + + + F A PT+THMA++EL
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELER 60
Query: 82 QGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLN 141
G + +V+SQN+DGLHLRSGL R+ L+ELHGNM+++ C C ++VR + G K
Sbjct: 61 AGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETG 120
Query: 142 IPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSI 186
C C G L DTI+D+ LP ++ + ADL +
Sbjct: 121 RRCH-----ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFL 160
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 151 bits (384), Expect = 2e-46
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 28/183 (15%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP-----------------KVNISFD 65
K +V+ TGAGIST +GIPDFR P G+W +
Sbjct: 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPL 60
Query: 66 DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 125
+A P H A+ EL +GK+ V++QN+DGLH R+G + + ELHG+++ +C KC ++
Sbjct: 61 NAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPK--VIELHGSLFRVRCTKCGKE 118
Query: 126 FVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADL 184
+ R + +P CP C G L ++ + +LP++ + + ADL
Sbjct: 119 YPRDELQADI--DREEVPRCP-----KCGGLLRPDVVFFGESLPEELDEAAEA-LAKADL 170
Query: 185 SII 187
++
Sbjct: 171 LLV 173
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 137 bits (347), Expect = 8e-41
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 28/170 (16%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGPN-GVWTL----------EKKGIKPKVNISF------- 64
K VV+ TGAGIST +GIPDFRG G+WT E P++ F
Sbjct: 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYT 60
Query: 65 -DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCE 123
DA P H A+ EL +GK+ +++QN+DGLH R+G R + ELHG++ +C C
Sbjct: 61 PLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCG 120
Query: 124 RQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDIN 173
+++ R + P C G L ++D+ LP++ +
Sbjct: 121 KEYPRDEV-----LEREKPPRC----PKCGGLLRPDVVDFGEALPKEWFD 161
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 110 bits (277), Expect = 4e-30
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 23/162 (14%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI----------KPKV 60
++ +++ + +AK +V+ TGAGIS +GIPDFR +G+W+ + P++
Sbjct: 1 PLEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPEL 60
Query: 61 NISF--------DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 112
F A P H A+ EL ++GK+ +++QNIDGLH R+G K + ELHG
Sbjct: 61 VWDFYSERLRLLYLAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHG 118
Query: 113 NMYVDQCNKCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCR 153
++ +C+KC Q+ ++ IP CP G R
Sbjct: 119 SLKRVRCSKCGNQYYD--EDVIKFIEDGLIPRCPKCGGPVLR 158
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 105 bits (264), Expect = 3e-28
Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 35/167 (20%)
Query: 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT------------LEKKGIK 57
+I+ L+E +DKAK +V+ TGAGIS +GIPDFR NG+W +
Sbjct: 1 MRIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARD--- 57
Query: 58 PKVNISF--------DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAE 109
P++ F DA P H A+ EL GK+ V++QNIDGLH R+G S+ + E
Sbjct: 58 PELVWKFYNERRRQLLDAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAG-SKN-VIE 115
Query: 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156
LHG++ +C KC + + CP C G L
Sbjct: 116 LHGSLLRARCTKCGQTYDLDEYLKPEP-----PRCPK-----CGGIL 152
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 102 bits (255), Expect = 4e-27
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 36/193 (18%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP---------------- 58
L + AK +V TGAG+ST++GIPD+R NG++ E P
Sbjct: 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYN-EIYKYSPEYLLSHDFLEREPEKF 59
Query: 59 ----KVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNM 114
K N+ F DA P + H + EL G V++QNIDGLH ++G K + E HG++
Sbjct: 60 YQFVKENLYFPDAKPNIIHQKMAELEKMGLKA-VITQNIDGLHQKAG--SKNVVEFHGSL 116
Query: 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINM 174
Y C C K+ K+ PY C G + I+ +E L + I
Sbjct: 117 YRIYCTVCG-----KTVDWEEYLKS-----PYHA--KCGGVIRPDIVLYEEMLNESVIEE 164
Query: 175 GDYNSSIADLSII 187
ADL +I
Sbjct: 165 AIQAIEKADLLVI 177
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 100 bits (251), Expect = 1e-26
Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 19/123 (15%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVW----TLEKKGIK-----PKVNISF----- 64
+ K++ V+ TGAGIST +GIPDFR P+G+W E I P+ F
Sbjct: 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEII 60
Query: 65 ---DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 121
+A P H + EL QG + +++QNIDGLH R+G S+ + ELHG + C
Sbjct: 61 LGLLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG-SKNVI-ELHGTLQTAYCVN 118
Query: 122 CER 124
C
Sbjct: 119 CGS 121
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 98.0 bits (244), Expect = 2e-25
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 36/193 (18%)
Query: 17 EWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT---------------------LEKKG 55
E +++++ V TGAGIST +GIPDFRGP G++ K+G
Sbjct: 6 ELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEG 65
Query: 56 IKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMY 115
I P + +A P + H+ + +L +G + V++QNID LH ++G K + ELHGN+
Sbjct: 66 IFPML-----EAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAG--SKKVIELHGNVE 118
Query: 116 VDQCNKCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHDTILDWEHNLPQKDINM 174
C +C +++ + + + ++P C C G + I+ + LPQ +
Sbjct: 119 EYYCVRCGKRYTVEDVIEKLEKS--DVPRCD-----DCSGLIRPNIVFFGEALPQDALRE 171
Query: 175 GDYNSSIADLSII 187
SS A L I+
Sbjct: 172 AIRLSSKASLMIV 184
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 90.0 bits (224), Expect = 6e-23
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 21/113 (18%)
Query: 30 GAGISTSAGIPDFRGPNGVWT-LEKKGI--------------KPKVNIS----FDDAVPT 70
GAGIST +GIPDFR +G++ L K+ + P NI+ A P
Sbjct: 1 GAGISTESGIPDFRSDDGLYAKLAKEELASPEAFFSNPYLVWDPFYNIARELLPGPAQPN 60
Query: 71 VTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCE 123
H I EL ++GK+ +++QNIDGLH R+G K + ELHG+ +C C
Sbjct: 61 PAHYFIAELEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCH 111
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 92.0 bits (229), Expect = 6e-23
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 28/123 (22%)
Query: 29 TGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------------------FDD 66
TGAGIST +GIPD+R G++ + +P + F
Sbjct: 15 TGAGISTESGIPDYRSEGGLY---SRTFRP-MTHQEFMRSPAARQRYWARSFVGWPRFSA 70
Query: 67 AVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQF 126
A P H A+ L G++H +++QN+DGLH ++G SR + ELHG+++ C C +
Sbjct: 71 AQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAG-SRN-VVELHGSLHRVVCLSCGFRT 128
Query: 127 VRK 129
R
Sbjct: 129 PRA 131
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 76.9 bits (190), Expect = 1e-17
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 19/122 (15%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGPNGVW---------TLEKKGIKPKVNISFDD------- 66
+ VV+ TGAGIS +GIP FR +G+W T E P++ F +
Sbjct: 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKAL 60
Query: 67 -AVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 125
A P H+A+ EL + +++QN+DGLH R+G SR + ELHG+++ +C+ C
Sbjct: 61 RAQPNPAHLALAELERRLPNVLLITQNVDGLHERAG-SRNVI-ELHGSLFRVRCSSCGYV 118
Query: 126 FV 127
Sbjct: 119 GE 120
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 75.9 bits (187), Expect = 9e-17
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------- 63
L +++++ + + TGAGIST +GIPD+R NG W P +
Sbjct: 12 LQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKR-----SPPITYQAFMGSDAARRR 66
Query: 64 -----------FDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 112
F A P H A+ L G++ +V+QN+DGLH R+G SR + ELHG
Sbjct: 67 YWARSMVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAG-SRDVI-ELHG 124
Query: 113 NMYVDQCNKCERQFVRKS 130
+ +C C + R
Sbjct: 125 RLDGVRCMGCGARHPRAE 142
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 73.8 bits (182), Expect = 2e-16
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 22/126 (17%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGPN-GVWT-LEKKGI----------------KPKVNISF 64
K +V+ GAGISTSAGIPDFR P G++ L + + +P ++
Sbjct: 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAK 60
Query: 65 D----DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
+ P+V H I L ++G + +QNID L +G+ + E HG+ C
Sbjct: 61 ELYPGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCI 120
Query: 121 KCERQF 126
KC+ ++
Sbjct: 121 KCKHKY 126
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 71.1 bits (174), Expect = 3e-15
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN----------------GVWTLEKKGIKP 58
L++ I K K+VV TG+G S + IP FRGP+ G W +K +
Sbjct: 21 LADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEV 80
Query: 59 KVNISFD-DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 117
+IS D + H+A+ L + G + +VV+QN+DGLH SG ++ + LHG+++
Sbjct: 81 IRDISSDYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTK--VIPLHGSVFEA 138
Query: 118 QCNKC 122
+C C
Sbjct: 139 RCCTC 143
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 61.0 bits (148), Expect = 1e-11
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 19 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT---LEKKG------IKPKV--------- 60
+ + + + TGAGIS +GI FR NG+W +E P +
Sbjct: 1 MKACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERR 60
Query: 61 -NISFDDAVPTVTHMAILELVNQ---GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYV 116
+ P H A+ +L + GKV VV+QN+D LH R+G S L +HG +
Sbjct: 61 RALLSSSVKPNKAHFALAKLEREYRGGKV-VVVTQNVDNLHERAG-STHVL-HMHGELLK 117
Query: 117 DQCNKCERQFV 127
+C F
Sbjct: 118 VRCTATGHVFD 128
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 59.1 bits (143), Expect = 1e-10
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 24/121 (19%)
Query: 30 GAGISTSAGIPDFRGPN-GVWT-LEKKGI--------------KPKV--NISFDDAV--- 68
GAGIS +AGIPDFR P+ G++ L K + KP+V +I+ + +
Sbjct: 37 GAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDLWPG 96
Query: 69 ---PTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 125
PT H I L ++G++ +QNIDGL +G+ L E HG+ C +C
Sbjct: 97 HFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTP 156
Query: 126 F 126
+
Sbjct: 157 Y 157
>gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of
uncharacterized Sir2-like proteins which lack certain
key catalytic residues and conserved zinc binding
cysteines; and are members of the SIR2 superfamily of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation.
Length = 242
Score = 33.1 bits (76), Expect = 0.057
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 23 KHVVLHTGAGISTSAGIPDFRG 44
VV+ GAG+S S+G+PD++
Sbjct: 1 GRVVIFVGAGVSVSSGLPDWKT 22
>gnl|CDD|200581 cd10958, CE4_NodB_like_2, Catalytic NodB homology domain of
uncharacterized chitin deacetylases and hypothetical
proteins. This family includes some uncharacterized
chitin deacetylases and hypothetical proteins, mainly
from eukaryotes. Although their biological function is
unknown, members in this family show high sequence
homology to the catalytic NodB homology domain of
Colletotrichum lindemuthianum chitin deacetylase
(endo-chitin de-N-acetylase, ClCDA, EC 3.5.1.41), which
catalyzes the hydrolysis of N-acetamido groups of
N-acetyl-D-glucosamine residues in chitin, converting it
to chitosan in fungal cell walls. Like ClCDA, this
family is a member the carbohydrate esterase 4 (CE4)
superfamily.
Length = 190
Score = 30.3 bits (69), Expect = 0.45
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 58 PKVNISFDDAVPTVTHMAILELVNQGKVH---YVVSQNIDGLHLRSGLSRKYLAELH--G 112
V ++ DDA P+ + IL+L+ + V +V+ + R + + + E H G
Sbjct: 1 KVVALTIDDA-PSPSTEEILDLLEEHNVRATFFVIGSHAPR---REEVLSRIVEEGHELG 56
Query: 113 N-MYVDQC------NKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDW 163
N D+ + E Q + S N I + FRP G +LD
Sbjct: 57 NHGMHDEPSASLSLAEFETQLLECERLISRLYPNRGISQKTKWFRPGSGFFTRRMLDT 114
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 29.7 bits (66), Expect = 0.82
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 KYLAELHGNMYVDQCNKCERQFVRKSATN 133
K ++EL + + DQC +CER+ V S N
Sbjct: 263 KVISELGDSAFEDQCGRCEREAVNVSLAN 291
>gnl|CDD|216550 pfam01522, Polysacc_deac_1, Polysaccharide deacetylase. This
domain is found in polysaccharide deacetylase. This
family of polysaccharide deacetylases includes NodB
(nodulation protein B from Rhizobium) which is a
chitooligosaccharide deacetylase. It also includes
chitin deacetylase from yeast, and endoxylanases which
hydrolyses glucosidic bonds in xylan.
Length = 124
Score = 28.4 bits (64), Expect = 1.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 57 KPKVNISFDDAVPTVTHMAILELVNQGKVH---YVVSQNID 94
K V ++FDD P T IL+++ + V +V+ N +
Sbjct: 6 KKSVALTFDDGPPDNT-PRILDVLKKYGVKATFFVIGGNAE 45
>gnl|CDD|236723 PRK10594, PRK10594, murein L,D-transpeptidase; Provisional.
Length = 608
Score = 28.9 bits (65), Expect = 1.7
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 15/45 (33%)
Query: 131 ATNSVGQKNLNIPCP---YRGFRPCRGTLHDTILDWEHNLPQKDI 172
A NS+G+ N+P Y LHDT HNL QKDI
Sbjct: 482 ARNSLGRYKFNMPSSDAIY---------LHDTP---NHNLFQKDI 514
>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
transport and metabolism].
Length = 889
Score = 29.0 bits (65), Expect = 1.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 65 DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYV 116
D AV TH I EL+ +G + + +IDGL G R+ + + Y+
Sbjct: 277 DPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYI 328
>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 825
Score = 28.9 bits (65), Expect = 2.0
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 65 DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELH 111
D AV TH +LELV +G V + +IDGL G YL L
Sbjct: 228 DPAVFDATHRLVLELVAEGLVDGLRIDHIDGLADPEG----YLRRLR 270
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 28.1 bits (63), Expect = 2.9
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 45 PNGVWTLEKKGIKPKVNISFDDAVP 69
P+G E KGI P + + D P
Sbjct: 350 PSGRSI-EGKGITPDIEVPQADDEP 373
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 28.1 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 39 IPDFRGPNGVWTL-------EKKGIKPKVNISFD-----DAVPTVTHMAIL 77
IP GP G + GI NIS D A+P T +AIL
Sbjct: 272 IPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAIL 322
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 27.2 bits (61), Expect = 5.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 76 ILELVNQGKVHY-VVSQNIDGLHLRSGLSRKYLAELHGNMYV 116
I E++ G V VVS + +G+ + + LA L GN+ V
Sbjct: 46 ICEII-DGPVSAQVVSTDAEGM-VAEA---RKLASLGGNVVV 82
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 508
Score = 27.6 bits (60), Expect = 5.6
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 46 NGVWTLEKKGIKPKV-NISFDDAVPT----VTHMAILELVNQGKVHYVVSQNIDG 95
G+ G V N+S ++ A+ N G V V + DG
Sbjct: 233 EGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDG 287
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase.
Length = 330
Score = 27.0 bits (59), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 105 KYLAELHGNMYVDQCNKCER 124
K LAE + + DQC +CER
Sbjct: 258 KVLAESESSAFEDQCGRCER 277
>gnl|CDD|234471 TIGR04104, cxxc_20_cxxc, cxxc_20_cxxc protein. This small,
uncommon, poorly conserved protein is found primarily in
the Firmicutes. It features are pair of CxxC motifs
separated by about 20 amino acids, followed by a highly
hydrophobic region of about 45 amino acids. It has no
conserved gene neighborhood, and its function is
unknown.
Length = 94
Score = 25.8 bits (57), Expect = 7.5
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 118 QCNKCERQFVRKSATNSVGQKNLNIPCPY 146
C C +F K S+ I CP
Sbjct: 2 ICKNCNEKFSYKELLKSLFSLYRPIKCPN 30
>gnl|CDD|179115 PRK00767, PRK00767, transcriptional regulator BetI; Validated.
Length = 197
Score = 26.3 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 93 IDGLHLRSGLSRK----YLAELHGNMYVDQ 118
IDGL LR LS A Y+DQ
Sbjct: 160 IDGLWLRGALSGDPEDAEAARALAYDYIDQ 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,612,149
Number of extensions: 856921
Number of successful extensions: 870
Number of sequences better than 10.0: 1
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 46
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)