RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13183
(192 letters)
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 230 bits (589), Expect = 3e-76
Identities = 95/189 (50%), Positives = 133/189 (70%), Gaps = 3/189 (1%)
Query: 2 FDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVN 61
FD E+ ++K+ L+ + ++ VV HTGAGIST++GIPDFRGP+GVWT+E++G+ PK +
Sbjct: 24 FDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFD 83
Query: 62 ISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 121
+F+ A PT THMA+++L G + ++VSQN+DGLH+RSG R LAELHGNM+V++C K
Sbjct: 84 TTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAK 143
Query: 122 CERQFVRKSATNSVGQKNLNIPCPY---RGFRPCRGTLHDTILDWEHNLPQKDINMGDYN 178
C+ Q+VR + ++G K C RG R CRG L DTILDWE +LP +D+ + D
Sbjct: 144 CKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEA 203
Query: 179 SSIADLSII 187
S ADLSI
Sbjct: 204 SRNADLSIT 212
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 231 bits (591), Expect = 3e-76
Identities = 95/189 (50%), Positives = 133/189 (70%), Gaps = 3/189 (1%)
Query: 2 FDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVN 61
FD E+ ++K+ L+ + ++ VV HTGAGIST++GIPDFRGP+GVWT+E++G+ PK +
Sbjct: 24 FDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFD 83
Query: 62 ISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 121
+F+ A PT THMA+++L G + ++VSQN+DGLH+RSG R LAELHGNM+V++C K
Sbjct: 84 TTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAK 143
Query: 122 CERQFVRKSATNSVGQKNLNIPCPY---RGFRPCRGTLHDTILDWEHNLPQKDINMGDYN 178
C+ Q+VR + ++G K C RG R CRG L DTILDWE +LP +D+ + D
Sbjct: 144 CKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEA 203
Query: 179 SSIADLSII 187
S ADLSI
Sbjct: 204 SRNADLSIT 212
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 158 bits (402), Expect = 4e-49
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 36/199 (18%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 50
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 51 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAE 109
K+GI P A P + H+ + +L +G + V++QNID LH R+G S+K + E
Sbjct: 62 RFAKEGIFP-----MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-SKK-VIE 114
Query: 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHDTILDWEHNLP 168
LHGN+ C +CE+++ + + ++P C C + I+ + NLP
Sbjct: 115 LHGNVEEYYCVRCEKKYTVEDVIKKLESS--DVPLCDD-----CNSLIRPNIVFFGENLP 167
Query: 169 QKDINMGDYNSSIADLSII 187
Q + SS A L I+
Sbjct: 168 QDALREAIGLSSRASLMIV 186
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 130 bits (329), Expect = 1e-37
Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 9 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWT-LEKKGI-------- 56
+ ++ ++ + + V+ GAGISTS GIPDFR P G++ L + +
Sbjct: 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFD 64
Query: 57 ------KPKV------NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSR 104
P + + P+ H + ++ + V +QNID L ++G+
Sbjct: 65 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 124
Query: 105 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP--CPYRGFRPCRGTLHDTILD 162
+ E HG+ C C + + + + + + + C C + I+
Sbjct: 125 DLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD-----VCGELVKPAIVF 179
Query: 163 WEHNLPQK 170
+ +LP
Sbjct: 180 FGEDLPDS 187
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 132 bits (333), Expect = 1e-37
Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 54/235 (22%)
Query: 5 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISF 64
+ I + + A+ +++ TGAG+STS GIPDFR G ++ K F
Sbjct: 29 RLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVF 88
Query: 65 D---------------------DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLS 103
+ + + + H I L +GK+ +QNID L +G+S
Sbjct: 89 NYNIFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGIS 148
Query: 104 RKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP-CPY---------------- 146
L + HG+ C C + N + +NL +P CPY
Sbjct: 149 TDKLVQCHGSFATATCVTCHWNLPGERIFNKI--RNLELPLCPYCYKKRREYFPEGYNNK 206
Query: 147 ---------RGFRP-----CRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSII 187
RP G L I + LP K + DL I
Sbjct: 207 VGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLIC 261
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 122 bits (309), Expect = 9e-35
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 4 SKEDFDKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWT-LEKKGI--- 56
+ + ++ ++E I + VV+ GAGIST +GIPDFR P +G+++ L++ +
Sbjct: 3 ASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYP 62
Query: 57 -----------KPKV------NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLR 99
PK + + P VTH + L ++G + + +QNIDGL
Sbjct: 63 EAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERV 122
Query: 100 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTLHD 158
SG+ L E HG C C+R F + V +P CP C G +
Sbjct: 123 SGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADV--MADRVPRCPV-----CTGVVKP 175
Query: 159 TILDWEHNLPQKDINMGDYNSSIADLSII 187
I+ + LPQ+ + + +ADL +I
Sbjct: 176 DIVFFGEPLPQRFLLHVV-DFPMADLLLI 203
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 119 bits (301), Expect = 1e-33
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 30/176 (17%)
Query: 2 FDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKV 60
F K+ ++ L++ I K KHVV TG+G S + IP FRG N +W+ P++
Sbjct: 25 FLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS----KYDPRI 80
Query: 61 NISFD--------------------DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRS 100
+ + H+A+ L + G + VV+QN+DGLH S
Sbjct: 81 YGTIWGFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEAS 140
Query: 101 GLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTL 156
G + K + LHGN++ C C + ++ P PC G
Sbjct: 141 G-NTK-VISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPE---CPCGGIF 191
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 117 bits (296), Expect = 4e-33
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFD--- 65
+ +I+ +E + K+KH V+ TGAGIS +GIP FRG +G+W + P+ S
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLW----RKYDPEEVASISGFK 57
Query: 66 -----------------DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLA 108
A P H AI EL G V V++QNID LH R+G SR+ +
Sbjct: 58 RNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-SRR-VL 115
Query: 109 ELHGNMYVDQCNKCERQF 126
ELHG+M C C +
Sbjct: 116 ELHGSMDKLDCLDCHETY 133
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 117 bits (294), Expect = 5e-32
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 31/193 (16%)
Query: 4 SKEDFDKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWT-LEKKGI--- 56
S + ++ ++ + + V+ GAGISTS GIPDFR P G++ L + +
Sbjct: 8 STASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYP 67
Query: 57 -----------KPKV------NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLR 99
P + + P+ H + ++ + V +QNID L +
Sbjct: 68 EAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQ 127
Query: 100 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP--CPYRGFRPCRGTLH 157
+G+ + E HG+ C C + + + + + + + C C +
Sbjct: 128 AGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD-----VCGELVK 182
Query: 158 DTILDWEHNLPQK 170
I+ + +LP
Sbjct: 183 PAIVFFGEDLPDS 195
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 113 bits (284), Expect = 2e-31
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 27/133 (20%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFD--------- 65
L + I ++K++V TGAG+S +GIP FRG +G+W +P+ +
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWN----RYRPEELANPQAFAKDPEKV 60
Query: 66 ------------DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN 113
+A P H A EL G + +++QN+D LH R+G SR + LHG+
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRN-VIHLHGS 118
Query: 114 MYVDQCNKCERQF 126
+ V +C C F
Sbjct: 119 LRVVRCTSCNNSF 131
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 108 bits (271), Expect = 3e-29
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 31/160 (19%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFD----- 65
+ ++ KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYW----RKWQAQDLATPLAFAHN 65
Query: 66 ----------------DAVPTVTHMAILEL----VNQGKVHYVVSQNIDGLHLRSGLSRK 105
P H AI E QG+ V++QNID LH ++G ++
Sbjct: 66 PSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG-TKN 124
Query: 106 YLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCP 145
L E+HG+++ +C C + P P
Sbjct: 125 -LLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEP 163
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 103 bits (259), Expect = 4e-27
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 32/205 (15%)
Query: 9 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPK----VN 61
+ ++ ++ ++ ++ + V+ GAGISTSAGIPDFR P G++ +K P
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFE 87
Query: 62 ISF-----------------DDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSR 104
IS+ PT+ H + L ++G + +QNID L +GL +
Sbjct: 88 ISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQ 147
Query: 105 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP-CPYRGFRPCRGTL-HDTILD 162
+ L E HG Y C + + + P C C+ + D +
Sbjct: 148 EDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCED-----CQSLVKPDIVFF 202
Query: 163 WEHNLPQKDINMGDYNSSIADLSII 187
E +LP + + + DL ++
Sbjct: 203 GE-SLPARFFSCMQSDFLKVDLLLV 226
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 98.4 bits (246), Expect = 8e-26
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 23 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP-----------------------K 59
V++ TGAGIS +GI FR +G+W + +
Sbjct: 2 PRVLVLTGAGISAESGIRTFRAADGLWE----EHRVEDVATPEGFDRDPELVQAFYNARR 57
Query: 60 VNISFDDAVPTVTHMAILELVNQ-GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQ 118
+ + P H+A+ +L + G +V+QNID LH R+G + + +HG + +
Sbjct: 58 RQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG-NTN-VIHMHGELLKVR 115
Query: 119 CNKCERQF 126
C++ +
Sbjct: 116 CSQSGQVL 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 9e-05
Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 73/187 (39%)
Query: 1 TFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGV-----WT----- 50
F++ D K + + + I++ +++ FR G+ +T
Sbjct: 1692 IFETIVDGKLKTEKIFKEINE------------HSTSYT--FRSEKGLLSATQFTQPALT 1737
Query: 51 ---------LEKKGIKPKVN-------------------ISFDDAVPTVTHMAILELVNQ 82
L+ KG+ P +S + V E+V
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV---------EVVFY 1788
Query: 83 -GK-VHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQK-- 138
G + V ++ G RS +A G + + + V + + G
Sbjct: 1789 RGMTMQVAVPRDELG---RSNYGM--IAINPGRVAASFSQEALQYVVERVGKRT-GWLVE 1842
Query: 139 --NLNIP 143
N N+
Sbjct: 1843 IVNYNVE 1849
Score = 30.8 bits (69), Expect = 0.30
Identities = 32/180 (17%), Positives = 50/180 (27%), Gaps = 73/180 (40%)
Query: 49 WTLEKKGIKPKVN------ISFDDAVP--TVTHMAILELVNQGKVHYVVSQNIDGLH--- 97
W LE P + IS P V +A HYVV+ + G
Sbjct: 218 W-LENPSNTPDKDYLLSIPISC----PLIGVIQLA----------HYVVTAKLLGFTPGE 262
Query: 98 LR---SGLS-------------------------RKYLAEL--HGNMYVDQCNKCERQFV 127
LR G + RK + L G +C +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-------VRCYEAYP 315
Query: 128 RKSATNSVGQKNLN----IPCP---YRGFRPCRGTLHDTILDWEHNLPQ-KDINMGDYNS 179
S S+ + +L +P P + + D + +LP K + + N
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNG 373
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.004
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 52 EKKGIKPKVNISF----DDAVPTVTHMAILE 78
EK+ +K K+ S DD+ P + A +E
Sbjct: 18 EKQALK-KLQASLKLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.057
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 15/80 (18%)
Query: 45 PNGVWTLEKKGIKPKV------NISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHL 98
P I + ++ D + V + LV + +S I ++L
Sbjct: 382 PPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYL 433
Query: 99 RSGLSRKYLAELHGNMYVDQ 118
+ + LH VD
Sbjct: 434 ELKVKLENEYALH-RSIVDH 452
Score = 28.3 bits (62), Expect = 1.9
Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 42/141 (29%)
Query: 5 KEDFDKKIKVLSEWIDKAKHVVLH--TGAGISTSAG--IPDFR----GPNGV-WTLEKKG 55
+ + K + L E + AK+V++ G+G + A ++ + W
Sbjct: 134 LQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW------ 186
Query: 56 IKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLH------------LRSGLS 103
+N+ + + +LE++ K+ Y + N +++ L
Sbjct: 187 ----LNLKNCN-----SPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 104 RKYLAELHGNMYV---DQCNK 121
R ++ + N + + N
Sbjct: 236 RLLKSKPYENCLLVLLNVQNA 256
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 30.6 bits (70), Expect = 0.28
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 22/75 (29%)
Query: 33 ISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------------FDDAVP---TVTH 73
IST AG + GP G +K + ++ S D+ P T +
Sbjct: 94 ISTKAGYDMWPGPYGSG-GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152
Query: 74 MAILELVNQGKVHYV 88
+A V GK YV
Sbjct: 153 LA--HAVQSGKALYV 165
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 30.3 bits (69), Expect = 0.39
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 22/75 (29%)
Query: 33 ISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------------FDDAVP---TVTH 73
IST AG + GP G W +K + ++ S D P T+
Sbjct: 115 ISTKAGYTMWDGPYGDW-GSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETM-- 171
Query: 74 MAILELVNQGKVHYV 88
A+ LV GK YV
Sbjct: 172 KALDHLVRHGKALYV 186
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 0.87
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 124 RQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEH 165
R+ + K A N+ + CP C+ + +
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPE-----CKVYPPKIVERFSE 40
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 4 SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNI 62
++ED + ++ L E D + G + P G G+K
Sbjct: 242 TREDIEGVLRELGELPD-----LWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTK 295
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 27.8 bits (61), Expect = 1.9
Identities = 13/99 (13%), Positives = 31/99 (31%)
Query: 57 KPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYV 116
KP+ +F+ + A + + +V + D ++ + ++ +
Sbjct: 61 KPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKL 120
Query: 117 DQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGT 155
E + + K N Y G P +G+
Sbjct: 121 LNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGS 159
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.3 bits (52), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 118 QCNKCERQFVRKSA 131
+C CER FV KSA
Sbjct: 3 KCGLCERSFVEKSA 16
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 4.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 5 KEDFDKKIKVL--------SEWIDKAKH 24
+E+ K+++ L EW +KAK
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKK 118
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 26.8 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 7 DFDKKIK-VLSEWIDKAKHVVL-----HT--GAGISTSAGIPD 41
DF+K+ K +L + +++ + +L HT GAG + S G D
Sbjct: 262 DFEKRFKALLKQ-LEQDTNSILFIDEIHTIIGAG-AASGGQVD 302
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 26.2 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 24 HVV-LHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVP 69
V AG I DF G EK G + +FDD V
Sbjct: 236 DAVCPEKKAGDRCPTAIHDFEGDQ--TYSEKPGHTFALTTNFDDLVS 280
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 26.1 bits (58), Expect = 7.6
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 64 FDDAVP---TVTHMAILELVNQGKVHYV 88
D P TV M ++NQG Y
Sbjct: 160 PDPNTPMEETVRAMT--HVINQGMAMYW 185
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 26.0 bits (58), Expect = 9.1
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 64 FDDAVP---TVTHMAILELVNQGKVHYV 88
D P TV M ++NQG Y
Sbjct: 126 PDPNTPMEETVRAMT--HVINQGMAMYW 151
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 24.4 bits (54), Expect = 9.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 99 RSGLSRKYLAELHGNMYVDQCNKCERQFVRKS 130
S R Y+ N+ V C C ++F RK
Sbjct: 23 ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 25.7 bits (57), Expect = 9.5
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 29 TGAGISTSAGIPD 41
+G +S G+ D
Sbjct: 46 SGLSVSAQLGVRD 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,987,775
Number of extensions: 172710
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 42
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)