RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13183
(192 letters)
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 112 bits (281), Expect = 2e-31
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 23/195 (11%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKG------------- 55
+ +I+ +E + K+KH V+ TGAGIS +GIP FRG +G+W
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPR 61
Query: 56 ---IKPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 112
A P H AI EL G V V++QNID LH R+G R + ELHG
Sbjct: 62 AFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELHG 119
Query: 113 NMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDI 172
+M C C + + + + ++ + LPQ+ +
Sbjct: 120 SMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKC-----GSYYVKPRVVLFGEPLPQRTL 174
Query: 173 NMGDYNSSIADLSII 187
+ D ++
Sbjct: 175 FEAIEEAKHCDAFMV 189
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 106 bits (264), Expect = 7e-29
Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 36/211 (17%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK---------------- 54
+ ++ KAKH+V+ +GAG+S +G+P FRG G W +
Sbjct: 4 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRV 63
Query: 55 -GIKPKVNISFDDAVPTVTHMAILELVN----QGKVHYVVSQNIDGLHLRSGLSRKYLAE 109
P H AI E QG+ V++QNID LH ++G L E
Sbjct: 64 WEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLE 121
Query: 110 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIP-------------CPYRGFRPCRGTL 156
+HG+++ +C C + P P C G L
Sbjct: 122 IHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLL 181
Query: 157 HDTILDWEHNLPQKDINMGDYNSSIADLSII 187
++ + NL + D + DL ++
Sbjct: 182 RPHVVWFGENLDPAILEEVDRELAHCDLCLV 212
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 103 bits (258), Expect = 4e-28
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 11 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI-------------- 56
K+K + +++++ V TGAGIST +GIPDFRGPNG++ + +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 57 --KPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNM 114
+ A P + H+ + +L +G + V++QNID LH R+G + + ELHGN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKK--VIELHGNV 119
Query: 115 YVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINM 174
C +CE+++ + + ++ + C + I+ + NLPQ +
Sbjct: 120 EEYYCVRCEKKYTVEDVIKKLESSDVPLCD------DCNSLIRPNIVFFGENLPQDALRE 173
Query: 175 GDYNSSIADLSII 187
SS A L I+
Sbjct: 174 AIGLSSRASLMIV 186
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 99.5 bits (247), Expect = 2e-26
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 28/190 (14%)
Query: 15 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKG-----------------IK 57
L + I ++K++V TGAG+S +GIP FRG +G+W +
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWY 64
Query: 58 PKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 117
+A P H A EL G + +++QN+D LH R+G + + LHG++ V
Sbjct: 65 AWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVV 122
Query: 118 QCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDY 177
+C C F +SA + C C L ++ LP ++
Sbjct: 123 RCTSCNNSFEVESA----PKIPPLPKCDK-----CGSLLRPGVVWAGEMLPPDVLDRAMR 173
Query: 178 NSSIADLSII 187
AD+ I+
Sbjct: 174 EVERADVIIV 183
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 91.1 bits (225), Expect = 4e-23
Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 25/194 (12%)
Query: 9 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD 65
+ ++ ++ + + V+ GAGISTS GIPDFR P G++ + P FD
Sbjct: 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFD 64
Query: 66 ---------------------DAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSR 104
+ P+ H + ++ + V +QNID L ++G+
Sbjct: 65 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 124
Query: 105 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPY-RGFRPCRGTLHDTILDW 163
+ E HG+ C C + + + + + + + + + D
Sbjct: 125 DLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDL 184
Query: 164 EHNLPQKDINMGDY 177
+ + +N ++
Sbjct: 185 PDSFSETWLNDSEW 198
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 87.9 bits (217), Expect = 1e-21
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 9 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPKVNISFD 65
+ ++ ++ ++ ++ + V+ GAGISTSAGIPDFR P+ G++ +K P F+
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFE 87
Query: 66 DAV---------------------PTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSR 104
+ PT+ H + L ++G + +QNID L +GL +
Sbjct: 88 ISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQ 147
Query: 105 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWE 164
+ L E HG Y C + K C+ + I+ +
Sbjct: 148 EDLVEAHGTFYTSHCVSASCRHEY----PLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFG 203
Query: 165 HNLPQKDINMGDYNSSIADLSII 187
+LP + + + DL ++
Sbjct: 204 ESLPARFFSCMQSDFLKVDLLLV 226
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 81.0 bits (199), Expect = 1e-19
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 36/188 (19%)
Query: 21 KAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK-------------------GIKPKVN 61
K + +VL TGAGIS +GI FR +G+W + +
Sbjct: 1 KPRVLVL-TGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQ 59
Query: 62 ISFDDAVPTVTHMAILELVNQ-GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 120
+ + P H+A+ +L + G +V+QNID LH R+G + + +HG + +C+
Sbjct: 60 LQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCS 117
Query: 121 KCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTI-LDWEHNLPQKDINMGDYNS 179
+ + + C L + E L +I M
Sbjct: 118 QSGQVLDWTGDVTPEDK----CHCC-----QFPAPLRPHVVWFGEMPLGMDEIYM---AL 165
Query: 180 SIADLSII 187
S+AD+ I
Sbjct: 166 SMADIFIA 173
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA
{Bacillus subtilis [TaxId: 1423]}
Length = 235
Score = 31.8 bits (71), Expect = 0.038
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Query: 57 KPKVNISFDDAVPTVTHMAILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAE-----LH 111
+ + ++FD+ +L+++ + +V + + L ++ E H
Sbjct: 42 EKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNH 101
Query: 112 GNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKD 171
+ D K Q + + + + RP RG + +L L +
Sbjct: 102 SFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQT 161
Query: 172 INM 174
+
Sbjct: 162 VFW 164
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 158
Score = 28.8 bits (64), Expect = 0.26
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA----------GIPDFRGPNGVWTLEKKGIKP 58
+K K ++ I KAK +L G ++ I + + G+
Sbjct: 6 LEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGE 65
Query: 59 KVN 61
KVN
Sbjct: 66 KVN 68
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 28.3 bits (62), Expect = 0.44
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 43
D I +++ I +AK+ + G S R
Sbjct: 7 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALR 41
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 28.2 bits (62), Expect = 0.57
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 29 TGAGISTSAGIPDFRGPNGVWTLE-----KKGIKPKVNISFDDAVPTVTHMAILELVNQG 83
+G +S G+ D + +E + + D + L
Sbjct: 43 SGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRL------ 96
Query: 84 KVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQC 119
V + + + G L L K + G
Sbjct: 97 -VRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLAD 131
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 27.7 bits (61), Expect = 0.87
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 42 FRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILEL 79
F NG G+ P + D+A+ I+
Sbjct: 263 FIDSNG-DYWLGGGVVPDAIVLADEALDKA--KEIIAF 297
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 27.1 bits (59), Expect = 0.89
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 43
D+ + +L + ++ A + + G + + D
Sbjct: 6 DQDLDILVKALNSASNPAIVLGPDVDAANANADCV 40
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.3 bits (52), Expect = 1.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 118 QCNKCERQFVRKSA 131
+C CER FV KSA
Sbjct: 2 KCGLCERSFVEKSA 15
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana
thomasiana) [TaxId: 29165]}
Length = 307
Score = 25.9 bits (56), Expect = 3.1
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 124 RQFVRKSATNSVGQKNLNIPCP-YRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIA 182
++ + T S Q + Y F H+ I W + MG + +
Sbjct: 150 KEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYS--MGHLHYASY 207
Query: 183 D 183
D
Sbjct: 208 D 208
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 25.7 bits (55), Expect = 3.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 10 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 43
K + + +AKH VL GA S +P R
Sbjct: 7 KAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIR 40
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase
{Oxalobacter formigenes [TaxId: 847]}
Length = 175
Score = 25.3 bits (54), Expect = 4.6
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 43
+ I ++ I AK V+ G G + + + R
Sbjct: 6 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIR 40
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
BA0424 {Bacillus anthracis [TaxId: 1392]}
Length = 235
Score = 24.8 bits (53), Expect = 6.0
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 5/124 (4%)
Query: 57 KPKVNISFDDAVPTVTHMAILELVNQGKVH---YVVSQNIDG--LHLRSGLSRKYLAELH 111
K + ++FD+ IL+++ + KV +V I L ++ H
Sbjct: 44 KKDIYLTFDNGYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNH 103
Query: 112 GNMYVDQCNKCERQFVRKSATNSVGQKNLNIPCPYRGFRPCRGTLHDTILDWEHNLPQKD 171
+ D + + + + + K + + RP RG + L + +
Sbjct: 104 SWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYN 163
Query: 172 INMG 175
+
Sbjct: 164 VFWS 167
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 24.9 bits (54), Expect = 6.0
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 60 VNISFDDAVPTVTHM--AILELVNQGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 117
V++ + + + E+ Q V + + +R G L M +
Sbjct: 14 VHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEE 73
Query: 118 QCNKC 122
Sbjct: 74 FLQTA 78
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana),
chloroplast [TaxId: 3702]}
Length = 179
Score = 24.2 bits (51), Expect = 9.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 9 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 37
D ++ + I ++K VL+ G G S+
Sbjct: 6 DSHLEQIVRLISESKKPVLYVGGGCLNSS 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 740,758
Number of extensions: 33477
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 23
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)