BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13184
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P07476|INVO_HUMAN Involucrin OS=Homo sapiens GN=IVL PE=1 SV=2
Length = 585
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPK-QKGQNNTPRQTPGQNNTP 183
+Q Q P+Q Q P+Q GQ P+Q GQ P+ Q+GQ P Q GQ P
Sbjct: 167 EQQEGQLKHPEQQEGQLELPEQQEGQLELPEQQEGQLELPEQQEGQLELPEQQEGQLELP 226
Query: 184 K-QKGQNNTPKQTPAQNNT-PKQKGQNNTPKQTPGQNDTPE-QKGQNNTPKQTPGQNKTP 240
+ Q+GQ P+Q Q +Q+GQ +Q GQ E Q+GQ P++ GQ K
Sbjct: 227 EQQEGQLELPQQQEGQLELSEQQEGQLELSEQQEGQLKHLEHQEGQLEVPEEQMGQLKYL 286
Query: 241 KQTPGQ-NNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTR 282
+Q GQ + +Q+ Q P+Q GQ EQ Q PK
Sbjct: 287 EQQEGQLKHLDQQEKQPELPEQQMGQLKHLEQ--QEGQPKHLE 327
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 219 DTPEQ-KGQNNTPKQTPGQNKTPKQTPGQNNTPK-QKGQNNTPKQTPGQNDTPE-QKGQN 275
+ PEQ +G +Q GQ K P+Q GQ P+ Q+GQ P+Q GQ + PE Q+GQ
Sbjct: 154 ELPEQQEGHLKHLEQQEGQLKHPEQQEGQLELPEQQEGQLELPEQQEGQLELPEQQEGQL 213
Query: 276 NTPKQ 280
P+Q
Sbjct: 214 ELPEQ 218
>sp|Q99PL5|RRBP1_MOUSE Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=2 SV=2
Length = 1605
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 78/183 (42%), Gaps = 5/183 (2%)
Query: 102 STVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQN 161
S +S AT SQ AQN K AQN K AQN K QN K QN
Sbjct: 187 SKASSPATSSQGKKGQGAQNQAKKGEGAQNQGKKGEGAQNQAKKGEGAQNQAKKGEGAQN 246
Query: 162 NTPKQKG-QNNTPRQTPGQNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQTPG-QN 218
K +G QN + GQN K +G QN K AQN K +G N K+ G QN
Sbjct: 247 QGKKGEGAQNQAKKGEGGQNQAKKGEGAQNQGKKGEGAQNQGKKGEGAQNQAKKGEGAQN 306
Query: 219 DTPEQKGQNNTPKQTPG-QNKTPKQTPGQNNTPK-QKGQNNTPKQTPGQNDTPEQKGQNN 276
+ +G N K+ G QN++ K QN K + GQN K QN + +G N
Sbjct: 307 QAKKGEGAQNQGKKGEGAQNQSKKGEGAQNQAKKGEGGQNQAKKGEGAQNQAKKGEGAQN 366
Query: 277 TPK 279
K
Sbjct: 367 QAK 369
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 73/184 (39%), Gaps = 28/184 (15%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
+ AQN K AQN K AQN K GQN K QN K +G N ++
Sbjct: 232 EGAQNQAKKGEGAQNQGKKGEGAQNQAKKGEGGQNQAKKGEGAQNQGKKGEGAQNQGKKG 291
Query: 177 PG-----------QNNTPKQKG-QNNTPKQTPAQNNTPKQKG-QNNTPKQTPGQNDTPEQ 223
G QN K +G QN K AQN + K +G QN K GQN +
Sbjct: 292 EGAQNQAKKGEGAQNQAKKGEGAQNQGKKGEGAQNQSKKGEGAQNQAKKGEGGQNQAKKG 351
Query: 224 KGQNNTPKQTPG-----------QNKTPKQTPGQNNTPKQKG---QNNTPKQTPGQNDTP 269
+G N K+ G QN+ K G N K KG QN K GQN T
Sbjct: 352 EGAQNQAKKGEGAQNQAKKGEGVQNQAKKGVEGAQNQGK-KGEANQNQAKKGEGGQNQTK 410
Query: 270 EQKG 273
+ +G
Sbjct: 411 KGEG 414
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
+ AQN K AQN + K AQN K GQN K QN K +G N ++
Sbjct: 312 EGAQNQGKKGEGAQNQSKKGEGAQNQAKKGEGGQNQAKKGEGAQNQAKKGEGAQNQAKKG 371
Query: 177 PGQNNTPKQ--KGQNNTPKQTPAQNNTPK--QKGQNNTPK----QTPGQNDTPEQK---- 224
G N K+ +G N K+ A N K + GQN T K Q G+ QK
Sbjct: 372 EGVQNQAKKGVEGAQNQGKKGEANQNQAKKGEGGQNQTKKGEGPQNQGKKGEAAQKQDKK 431
Query: 225 ------------GQNNTPKQTPG-QNKTPKQTPGQNNTPKQKG-QNNTPKQTPGQNDTPE 270
G +N K+ G QN+ K QN + K +G QN K GQN +
Sbjct: 432 IEGAQNQGKKPEGTSNQGKKGEGAQNQGKKGEGAQNQSKKGEGAQNQAKKGEGGQNQAKK 491
Query: 271 QKGQNNTPK 279
+G N K
Sbjct: 492 GEGAQNQAK 500
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 108 ATPSQSTSIDSAQN------NTSKQ----TPAQNNTPKQTPAQNNTPKQTPGQNNTPKQT 157
A Q I+ AQN TS Q AQN K AQN + K QN K
Sbjct: 424 AAQKQDKKIEGAQNQGKKPEGTSNQGKKGEGAQNQGKKGEGAQNQSKKGEGAQNQAKKGE 483
Query: 158 PGQNNTPKQKGQNNTPRQTPG-QNNTPKQKGQNNTPKQ--TPAQNNTPKQKG-QNNTPKQ 213
GQN K +G N ++ G QN K +G N K+ AQN K + QN K
Sbjct: 484 GGQNQAKKGEGAQNQAKKGEGAQNQAKKGEGVQNQAKKGVEGAQNQGKKGEANQNQAKKG 543
Query: 214 TPGQNDTPEQKG-QNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPG 264
GQN T + +G QN K Q + K QN K +G +N K+ G
Sbjct: 544 EGGQNQTKKGEGPQNQGKKGEAAQKQDKKIEGAQNQGKKPEGTSNQGKKGEG 595
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKG---QNNTP 173
+ QN K AQN K AQN K QN K G N K KG QN
Sbjct: 483 EGGQNQAKKGEGAQNQAKKGEGAQNQAKKGEGVQNQAKKGVEGAQNQGK-KGEANQNQAK 541
Query: 174 RQTPGQNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQTPG-QNDTPEQKGQNNTPK 231
+ GQN T K +G QN K AQ K +G N K+ G N + +G N K
Sbjct: 542 KGEGGQNQTKKGEGPQNQGKKGEAAQKQDKKIEGAQNQGKKPEGTSNQGKKGEGAQNQGK 601
Query: 232 QTPG-QNKTPKQTPGQNNTPKQKGQNNTPKQTPG 264
+ G QN+ K QN K +G N K+ G
Sbjct: 602 KGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEG 635
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 116 IDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQ 175
++ AQN K QN K QN T K QN K Q K +G N ++
Sbjct: 382 VEGAQNQGKKGEANQNQAKKGEGGQNQTKKGEGPQNQGKKGEAAQKQDKKIEGAQNQGKK 441
Query: 176 TPGQNNTPK--QKGQNNTPKQTPAQNNTPKQKG-QNNTPKQTPGQNDTPEQKGQNNTPKQ 232
G +N K + QN K AQN + K +G QN K GQN + +G N K+
Sbjct: 442 PEGTSNQGKKGEGAQNQGKKGEGAQNQSKKGEGAQNQAKKGEGGQNQAKKGEGAQNQAKK 501
Query: 233 TPG-----------QNKTPKQTPGQNNTPKQKG---QNNTPKQTPGQNDTPEQKG 273
G QN+ K G N K KG QN K GQN T + +G
Sbjct: 502 GEGAQNQAKKGEGVQNQAKKGVEGAQNQGK-KGEANQNQAKKGEGGQNQTKKGEG 555
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 109 TPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKG 168
T +Q + AQN K AQN K AQN K QN K QN K +G
Sbjct: 586 TSNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEG 645
Query: 169 QNNTPRQTPG-QNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQTPG 216
N ++ G QN K +G QN K AQN K +G N K+ G
Sbjct: 646 AQNQGKKGEGAQNQGKKGEGPQNQAKKGEGAQNQGKKGEGAQNQGKKGEG 695
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 66/161 (40%), Gaps = 4/161 (2%)
Query: 108 ATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQK 167
A Q I+ AQN K N K AQN K QN K QN K +
Sbjct: 565 AAQKQDKKIEGAQNQGKKPEGTSNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGE 624
Query: 168 GQNNTPRQTPG-QNNTPKQKG-QNNTPKQTPAQNNTPKQKG-QNNTPKQTPGQNDTPEQK 224
G N ++ G QN K +G QN K AQN K +G QN K QN + +
Sbjct: 625 GAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKGEGPQNQAKKGEGAQNQGKKGE 684
Query: 225 GQNNTPKQTPG-QNKTPKQTPGQNNTPKQKGQNNTPKQTPG 264
G N K+ G QN+ K Q+ + K +G N K+ G
Sbjct: 685 GAQNQGKKGEGAQNQGKKAEGVQSQSKKGEGTQNQGKKGDG 725
>sp|P14591|INVO_PANPA Involucrin OS=Pan paniscus GN=IVL PE=2 SV=1
Length = 560
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPK-QKGQNNTPRQTPGQ-NNT 182
+Q Q P+Q Q +Q GQ P+Q GQ P+ Q+GQ Q GQ +
Sbjct: 167 EQREGQLELPEQQEGQLKHLEQQKGQLELPEQQEGQLELPEQQEGQLKHLEQQEGQLKHL 226
Query: 183 PKQKGQNNTPKQTPAQ-NNTPKQKGQNNTPKQTPGQNDTPEQK-GQNNTPKQTPGQNKTP 240
Q+GQ P++ Q +Q+GQ Q Q + PEQ+ GQ +Q GQ K
Sbjct: 227 EHQEGQLEVPEEQVGQLKYLEQQEGQLKHLDQQEKQPELPEQQVGQLKHLEQQEGQPKHL 286
Query: 241 KQTPGQ-NNTPKQKGQNNTPKQTPGQNDTPE-QKGQNNTPKQ 280
+Q GQ + +Q+GQ +Q GQ + E Q+GQ P+Q
Sbjct: 287 EQQKGQLEHLEEQEGQLKHLEQQEGQLEHLEHQEGQLGLPEQ 328
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 14/153 (9%)
Query: 118 SAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQ-NNTPKQKGQNNTPRQT 176
Q +Q Q P+Q Q P+Q GQ +Q GQ + Q+GQ P +
Sbjct: 180 EGQLKHLEQQKGQLELPEQQEGQLELPEQQEGQLKHLEQQEGQLKHLEHQEGQLEVPEEQ 239
Query: 177 PGQ-NNTPKQKGQNNTPKQTPAQNNTPKQK-GQNNTPKQTPGQ-----------NDTPEQ 223
GQ +Q+GQ Q Q P+Q+ GQ +Q GQ EQ
Sbjct: 240 VGQLKYLEQQEGQLKHLDQQEKQPELPEQQVGQLKHLEQQEGQPKHLEQQKGQLEHLEEQ 299
Query: 224 KGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQN 256
+GQ +Q GQ + + GQ P+Q+ Q
Sbjct: 300 EGQLKHLEQQEGQLEHLEHQEGQLGLPEQQVQQ 332
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 162 NTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTP 221
+ +Q+GQ Q GQ P+Q GQ PK N +++ Q P+Q GQ
Sbjct: 408 HLEEQEGQLKHLEQQQGQLGVPEQVGQ---PK------NLEQEEKQLELPEQQEGQLKHL 458
Query: 222 E-QKGQNNTPKQTPGQNKTPKQTPGQNNTPKQK-GQNNTPKQTPGQ-NDTPEQKGQNNTP 278
E Q+ Q P+Q GQ K +Q Q P+Q+ GQ +Q GQ D +QKGQ P
Sbjct: 459 EKQEAQLELPEQQVGQPKHLEQQEKQLEPPEQQDGQLKHLEQQEGQLKDLEQQKGQLEQP 518
Query: 279 KQTRTFS 285
F+
Sbjct: 519 ----VFA 521
>sp|Q9P2E9|RRBP1_HUMAN Ribosome-binding protein 1 OS=Homo sapiens GN=RRBP1 PE=1 SV=4
Length = 1410
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 109 TPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKG 168
P+Q + AQN K AQN K AQN K QN K QN K +G
Sbjct: 285 APTQGRKAEGAQNQAKKVEGAQNQGKKAEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEG 344
Query: 169 QNNTPRQTPG-QNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQTPG-QNDTPEQKG 225
N ++ G QN K +G QN K AQN K +G N K+ G QN + +G
Sbjct: 345 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKSEGAQNQGKKVEGAQNQGKKAEG 404
Query: 226 QNNTPKQTPG-QNKTPKQTPGQNNTPKQKGQNNTPKQTPG 264
N K+ G QN+ K QN K +G N K+ G
Sbjct: 405 AQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEG 444
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
+ AQN K AQN K AQN K QN K QN K +G N ++
Sbjct: 333 EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKSEGAQNQGKKV 392
Query: 177 PG-QNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQTPG-QNDTPEQKGQNNTPKQT 233
G QN K +G QN K AQN K +G N K+ G QN + +G N K+
Sbjct: 393 EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKA 452
Query: 234 PG-QNKTPKQTPGQNNTPKQKGQNNTPKQTPG 264
G QN+ K QN K +G N K+ G
Sbjct: 453 EGAQNQGKKAEGAQNQGKKVEGAQNQGKKAEG 484
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
+ AQN K AQN K AQN K QN K QN K +G N ++
Sbjct: 403 EGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKA 462
Query: 177 PG-QNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQTPG-QNDTPEQKGQNNTPKQT 233
G QN K +G QN K AQN K +G N K+ G QN + +G N K+T
Sbjct: 463 EGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGQKGEGAQNQGKKT 522
Query: 234 PG-QNKTPKQTPGQ 246
G Q K +++P Q
Sbjct: 523 EGAQGKKAERSPNQ 536
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 106 STATPSQSTSIDSAQNNTSKQ--TPAQNNTPKQTP--------AQNNTPKQTPGQNNTPK 155
+ TP+Q + AQN K TP Q + P AQN K QN K
Sbjct: 252 AEGTPNQGKKAEGAQNQGKKVDTTPNQGKKVEGAPTQGRKAEGAQNQAKKVEGAQNQGKK 311
Query: 156 QTPGQNNTPKQKGQNNTPRQTPG-QNNTPKQKG-QNNTPKQTPAQNNTPKQKGQNNTPKQ 213
QN K +G N ++ G QN K +G QN K AQN K +G N K+
Sbjct: 312 AEGAQNQGKKGEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEGAQNQGKK 371
Query: 214 TPG-QNDTPEQKGQNNTPKQTPG-QNKTPKQTPGQNNTPKQKGQNNTPKQTPG 264
G QN + +G N K+ G QN+ K QN K +G N K+ G
Sbjct: 372 AEGAQNQGKKSEGAQNQGKKVEGAQNQGKKAEGAQNQGKKAEGAQNQGKKAEG 424
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4
Length = 5068
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 133 TPKQTPAQNNTP-KQTPGQNNTPKQTPGQNNTPKQ-KGQNNTPRQTPGQNNTPKQK-GQN 189
+P QTPAQ P Q PG Q PG +P Q G +P Q P P Q+ G
Sbjct: 258 SPAQTPAQQAKPVAQQPGPAKATVQQPGPAKSPAQPAGTGKSPAQPPVTAKPPAQQAGLE 317
Query: 190 NTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNT 249
T Q P PK Q TPGQ P G +P Q PG K P Q PG
Sbjct: 318 KTSLQQPG----PKSLAQ------TPGQGKVP--PGPAKSPAQQPGTAKLPAQQPGPQTA 365
Query: 250 PKQKGQNNTPKQTPGQNDTPEQ 271
K G TP Q G TP Q
Sbjct: 366 AKVPGPTKTPAQLSGPGKTPAQ 387
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 126 QTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQ 185
QTP Q P P +P Q PG P Q PG K G TP Q G TP Q
Sbjct: 331 QTPGQGKVP---PGPAKSPAQQPGTAKLPAQQPGPQTAAKVPGPTKTPAQLSGPGKTPAQ 387
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1
Length = 5085
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 133 TPKQTPAQNNTP----KQTPGQNNTPKQTPGQNNTPKQ-KGQNNTPRQTPGQNNTPKQKG 187
+P QTPAQ +P Q PG Q PG +P Q G +P Q P + TP Q
Sbjct: 257 SPAQTPAQQASPGKPVAQQPGSAKATVQQPGPAKSPAQPAGTGKSPAQPPAK--TPGQ-- 312
Query: 188 QNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQN 247
Q K + +Q PK Q TPG P G +P Q PG K P Q PG
Sbjct: 313 QAGLEKTSSSQQPGPKSLAQ------TPGHGKFP--LGPVKSPAQQPGTAKHPAQQPGPQ 364
Query: 248 NTPKQKGQNNTPKQTPGQNDTPEQ 271
K G TP Q G TP Q
Sbjct: 365 TAAKVPGPTKTPAQQSGPGKTPAQ 388
>sp|Q91Z58|CF132_MOUSE Uncharacterized protein C6orf132 homolog OS=Mus musculus PE=1 SV=2
Length = 1206
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQK-GQNNTPRQTPGQNNTP 183
K TP K TP Q +PK TPG+ K TPGQ TPK GQ+ P+ TPGQ
Sbjct: 658 KATPGLTLPLKPTPEQTTSPKNTPGKATPLKDTPGQATTPKDTPGQDTPPKDTPGQAAVL 717
Query: 184 KQKGQNNTP 192
K + +TP
Sbjct: 718 KNAPELSTP 726
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%)
Query: 120 QNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTP 173
Q + K TP + K TP Q TPK TPGQ+ PK TPGQ K + +TP
Sbjct: 673 QTTSPKNTPGKATPLKDTPGQATTPKDTPGQDTPPKDTPGQAAVLKNAPELSTP 726
>sp|Q8MTI2|BSL1_TRIVA Putative surface protein bspA-like OS=Trichomonas vaginalis
GN=BSPAL1 PE=4 SV=1
Length = 625
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 65/112 (58%), Gaps = 28/112 (25%)
Query: 164 PKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQ 223
P Q G+N P Q PG+N P Q G+N P Q P +N P Q G+N P Q PG+N P Q
Sbjct: 445 PNQPGEN--PNQ-PGEN--PNQPGEN--PNQ-PGEN--PSQPGEN--PSQ-PGEN--PNQ 489
Query: 224 KGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQN 275
G+N P Q PG+N P Q PG+N P Q G+N P Q PG+N P Q G+N
Sbjct: 490 PGEN--PSQ-PGEN--PNQ-PGEN--PNQPGEN--PNQ-PGEN--PSQPGEN 528
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
Length = 1307
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 124 SKQTPAQNNTPKQTPAQNNTPKQTPGQNN---TPKQTPG---QNNTPKQKGQNNTPRQTP 177
SK+ + T QTP +TPK+ + TP TP + TP + N TP TP
Sbjct: 195 SKRKRRWDQTGDQTP--GSTPKKLSSWDQAEVTPGHTPSSLRWDETPGRAKGNETPGATP 252
Query: 178 GQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQ-TPGQNDTPEQKGQNNTPKQTPGQ 236
G K + TP TPA TP G+ +TP TPG + + N +TP
Sbjct: 253 GS------KIWDPTPSHTPAGVATP---GRGDTPGHVTPGHSGAT-SSARKNRWDETP-- 300
Query: 237 NKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPE 270
KT + TPG + G TP+ G + E
Sbjct: 301 -KTERDTPGHGS-----GWAETPRTDRGGDSIGE 328
>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SEC16 PE=3 SV=2
Length = 2130
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 34/90 (37%)
Query: 161 NNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDT 220
+N P + +N+ P + P + N+ P +N P N+ P G +
Sbjct: 263 DNLPWESNKNDAPSSQADNDKLPWESDINDAPSSQAGDDNLPWDSNTNDAPSSQAGDGNL 322
Query: 221 PEQKGQNNTPKQTPGQNKTPKQTPGQNNTP 250
P N+ P +K P ++ N+ P
Sbjct: 323 PWDSNTNDAPSSQAEDDKLPWESDINNDVP 352
>sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=2
Length = 4493
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 116 IDSAQNNTSKQTPAQNNTPKQTPAQNNT----------PKQTPGQNNTPKQTPGQNNTPK 165
+ S++ +T +TPA +TP T + ++ P TP + +TP + + TP
Sbjct: 2999 VASSEASTLSRTPADTSTPVTTSTEASSSPTTAEGTGIPISTPSEGSTPLTSIPVSTTPV 3058
Query: 166 QKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNT--PKQKGQNNTPKQTPGQNDTPEQ 223
+ +T TP +N+P + TPA+ + + +TP + TP
Sbjct: 3059 AIPEASTLSTTPVDSNSPVVTSTEVSSSPTPAEGTSMPISTYSEGSTPLTGVPVSTTPVT 3118
Query: 224 KGQNNTPKQTPGQNKTPKQTPGQ-NNTPKQKGQNNTPKQTPGQNDTP 269
+T TP TP T + +++P + P TP + TP
Sbjct: 3119 SSAISTLSTTPVDTSTPVTTSTEAHSSPTTSEGTSMPTSTPSEGSTP 3165
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 107 TATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQN----------NTPKQTPGQNNTPKQ 156
T+ P +T + S++ +T TP +TP T A+ + P TP + TP +
Sbjct: 1399 TSIPVSTTPVVSSEASTLSATPVDTSTPGTTSAEATSSPTTAEGISIPTSTPSEGKTPLK 1458
Query: 157 TPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQ 198
+ +NTP + +T TP +N+P + TPA+
Sbjct: 1459 SIPVSNTPVANSEASTLSTTPVDSNSPVVTSTAVSSSPTPAE 1500
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 27/196 (13%)
Query: 116 IDSAQNNTSKQTPAQNNTPKQTPAQ----------NNTPKQTPGQNNTPKQTPGQNNTPK 165
+ S++ +T TP +TP T + + P +P + TP + + TP
Sbjct: 3352 VVSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMPVSTTPV 3411
Query: 166 QKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTP--KQKGQNNTPKQTPGQNDTPEQ 223
+ NT TP +NT + T A+ + + +TP + TP
Sbjct: 3412 VSSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPVA 3471
Query: 224 KGQNNTPKQTPGQNKTPKQTPG-QNNTPKQKGQNNTPKQTPGQNDTP------------- 269
+ +T TP TP T N++P + P T G+ TP
Sbjct: 3472 SSEASTLSTTPVDTSTPVTTSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMPVSTTPVAS 3531
Query: 270 -EQKGQNNTPKQTRTF 284
E + TP + TF
Sbjct: 3532 SEASTLSTTPVDSNTF 3547
>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2
Length = 2804
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 12/78 (15%)
Query: 187 GQNNTPKQTPAQNNTPKQKGQN--NTPKQ-TPGQNDTPEQKGQN--NTPKQTPGQNK--T 239
G++ T K P TPKQKG++ TPKQ + G +TP+QKG TPKQ G+++ T
Sbjct: 691 GRSETTKSRP---ETPKQKGESRPETPKQKSDGHPETPKQKGDGRPETPKQ-KGESRPET 746
Query: 240 PKQ-TPGQNNTPKQKGQN 256
PKQ G+ TPK + N
Sbjct: 747 PKQKNEGRPETPKHRHDN 764
>sp|Q06852|SLAP1_CLOTH Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=olpB PE=4 SV=2
Length = 2313
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 127 TPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQK 186
TP+ TP +TP + P TP TP P ++ P + TP P + TP++
Sbjct: 1646 TPSDEPTPSETP-EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP-TPSDEPTPSETPEEP 1703
Query: 187 GQNNTPKQ--TPAQNNTPKQK---GQNNTPKQTPGQNDTPEQKGQNNTPKQ--TPGQNKT 239
+TP TP+ TP + TP P ++TPE+ +TP TP T
Sbjct: 1704 IPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1763
Query: 240 PKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTP 278
P P ++ P TP P ++TPE+ +TP
Sbjct: 1764 PSDEPTPSDEP-------TPSDEPTPSETPEEPIPTDTP 1795
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 127 TPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQK 186
TP+ TP +TP + P TP TP P ++ P + TP P + TP++
Sbjct: 1689 TPSDEPTPSETP-EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP-TPSDEPTPSETPEEP 1746
Query: 187 GQNNTPKQ--TPAQNNTPKQK---GQNNTPKQTPGQNDTPEQKGQNNTPKQ--TPGQNKT 239
+TP TP+ TP + TP P ++TPE+ +TP TP T
Sbjct: 1747 IPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1806
Query: 240 PKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTP 278
P P ++ P TP P ++TPE+ +TP
Sbjct: 1807 PSDEPTPSDEP-------TPSDEPTPSETPEEPIPTDTP 1838
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 127 TPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQK 186
TP+ TP +TP + P TP TP P ++ P + TP P + TP++
Sbjct: 1732 TPSDEPTPSETP-EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP-TPSDEPTPSETPEEP 1789
Query: 187 GQNNTPKQ--TPAQNNTPKQK---GQNNTPKQTPGQNDTPEQKGQNNTPKQ--TPGQNKT 239
+TP TP+ TP + TP P ++TPE+ +TP TP T
Sbjct: 1790 IPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1849
Query: 240 PKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTP 278
P P ++ P TP P ++TPE+ +TP
Sbjct: 1850 PSDEPTPSDEP-------TPSDEPTPSETPEEPIPTDTP 1881
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 127 TPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQK 186
TP+ TP +TP + P TP TP P ++ P + TP P + TP++
Sbjct: 1775 TPSDEPTPSETP-EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP-TPSDEPTPSETPEEP 1832
Query: 187 GQNNTPKQ--TPAQNNTPKQK---GQNNTPKQTPGQNDTPEQKGQNNTPKQ--TPGQNKT 239
+TP TP+ TP + TP P ++TPE+ +TP TP T
Sbjct: 1833 IPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1892
Query: 240 PKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTP 278
P P ++ P TP P ++TPE+ +TP
Sbjct: 1893 PSDEPTPSDEP-------TPSDEPTPSETPEEPIPTDTP 1924
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 127 TPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQK 186
TP+ TP +TP + P TP TP P ++ P + TP P + TP++
Sbjct: 1818 TPSDEPTPSETP-EEPIPTDTPSDEPTPSDEPTPSDEPTPSDEP-TPSDEPTPSETPEEP 1875
Query: 187 GQNNTPKQ--TPAQNNTPKQK---GQNNTPKQTPGQNDTPEQKGQNNTPKQ--TPGQNKT 239
+TP TP+ TP + TP P ++TPE+ +TP TP T
Sbjct: 1876 IPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPT 1935
Query: 240 PKQ--TPGQNNTPKQK---GQNNTPKQTPGQNDTPEQKGQNNTP 278
P TP TP + TP P ++TPE+ +TP
Sbjct: 1936 PSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTP 1979
>sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1
Length = 2798
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 16/85 (18%)
Query: 117 DSAQNNT-SKQTPAQNNTPKQ-TPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQN--NT 172
D+ QNNT S+ T A+ TPKQ ++ TPKQ ++ G+ TPKQKG T
Sbjct: 685 DNKQNNTRSENTKARPETPKQKAESRPETPKQ---------KSEGRPETPKQKGDGRPET 735
Query: 173 PRQ-TPGQNNTPKQKGQN--NTPKQ 194
P+Q + G+ TPKQKG+ TPK
Sbjct: 736 PKQKSEGRPETPKQKGEGRPETPKH 760
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 21/93 (22%)
Query: 188 QNNTPKQ-TPAQNNTPKQKGQN--NTPKQTPGQNDTPEQKGQNNTPKQT-PGQNKTPKQ- 242
QNNT + T A+ TPKQK ++ TPKQ + +G+ TPKQ G+ +TPKQ
Sbjct: 688 QNNTRSENTKARPETPKQKAESRPETPKQ--------KSEGRPETPKQKGDGRPETPKQK 739
Query: 243 TPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQN 275
+ G+ TPKQKG+ G+ +TP+ + +N
Sbjct: 740 SEGRPETPKQKGE--------GRPETPKHRHEN 764
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.296 0.114 0.312
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,320,619
Number of Sequences: 539616
Number of extensions: 6619180
Number of successful extensions: 85705
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 2398
Number of HSP's that attempted gapping in prelim test: 23486
Number of HSP's gapped (non-prelim): 22939
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 60 (27.7 bits)