Query psy13184
Match_columns 285
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 22:17:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljx_A Protein E6; metal bindi 12.9 41 0.0014 24.2 -0.1 27 49-75 3-29 (84)
2 1gvf_A Tagatose-bisphosphate a 9.7 76 0.0026 27.2 0.5 29 44-72 96-132 (286)
3 3q94_A Fructose-bisphosphate a 9.2 81 0.0028 27.1 0.5 29 44-72 102-138 (288)
4 1dos_A Aldolase class II; lyas 9.1 82 0.0028 27.9 0.5 28 45-72 137-172 (358)
5 3n9r_A Fructose-bisphosphate a 8.7 86 0.003 27.3 0.5 29 44-72 96-132 (307)
6 3qm3_A Fructose-bisphosphate a 8.6 93 0.0032 27.6 0.6 29 44-72 134-170 (357)
7 1rvg_A Fructose-1,6-bisphospha 8.6 89 0.003 27.2 0.5 29 44-72 94-130 (305)
8 2isw_A Putative fructose-1,6-b 8.1 96 0.0033 27.3 0.5 29 44-72 97-133 (323)
9 3pm6_A Putative fructose-bisph 8.0 97 0.0033 27.2 0.5 30 43-72 111-148 (306)
10 3elf_A Fructose-bisphosphate a 7.7 1E+02 0.0035 27.3 0.5 29 44-72 123-159 (349)
No 1
>2ljx_A Protein E6; metal binding protein; NMR {Human papillomavirus} PDB: 2ljy_A
Probab=12.93 E-value=41 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.1
Q ss_pred cccCCCcccceeeeeecccccccccCC
Q psy13184 49 VMSDGSESGRVTRRSCKLSGIKLEDIS 75 (285)
Q Consensus 49 vmsdgsesgrvtrrscklsgikledis 75 (285)
.|+++.+.-+--+.-|+..||.++||.
T Consensus 3 ~m~~~~~~P~tl~~Lc~~~~i~~~dl~ 29 (84)
T 2ljx_A 3 MFQDPQERPRKLPQLCTELQTTIHDII 29 (84)
T ss_dssp CCCTTCCCCSSHHHHHHHTTSCTTTCC
T ss_pred cCCCCCCCCCcHHHHHHHHCCCHHHeE
Confidence 377777777777788999999999985
No 2
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=9.71 E-value=76 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=19.9
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
...+|||-|||..- ++||+- |.-.|+.+|
T Consensus 96 ~GFtSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gvsVE 132 (286)
T 1gvf_A 96 AGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCeEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 35899999999653 455554 444577766
No 3
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=9.20 E-value=81 Score=27.08 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
...+|||-|||..- ++||+- |.-.|+.+|
T Consensus 102 ~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVE 138 (288)
T 3q94_A 102 AGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 138 (288)
T ss_dssp HTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46899999999653 556553 455677766
No 4
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=9.06 E-value=82 Score=27.94 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=19.3
Q ss_pred cccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 45 SISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 45 sissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
-.+|||-|||+.- ++||+- |.-.|+.+|
T Consensus 137 gFtSVMiDgS~~p~eENI~~Tkevv~~ah~~gvsVE 172 (358)
T 1dos_A 137 LFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 172 (358)
T ss_dssp SCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCceEeecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4899999999653 455554 444577776
No 5
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=8.75 E-value=86 Score=27.32 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=20.6
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
...+|||-|||..- ++||+- |.-.|+.+|
T Consensus 96 ~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVE 132 (307)
T 3n9r_A 96 AGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_dssp HTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35899999999654 566654 444677776
No 6
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=8.57 E-value=93 Score=27.59 Aligned_cols=29 Identities=31% Similarity=0.228 Sum_probs=20.0
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
.-.+|||-|||..- ++||+- |.-.|+.+|
T Consensus 134 ~GFtSVMiDgS~lp~eENI~~Tk~vv~~ah~~gvsVE 170 (357)
T 3qm3_A 134 ALFSSHMLDLSEESLEENLSTCEVYLQKLDALGVALE 170 (357)
T ss_dssp CSCSEEECCCTTSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35899999999653 556654 444577776
No 7
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=8.55 E-value=89 Score=27.21 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=20.0
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
...+|||-|||..- ++||+- |.-.|+.+|
T Consensus 94 ~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVE 130 (305)
T 1rvg_A 94 AGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVE 130 (305)
T ss_dssp TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCeeeeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46899999999653 456554 444677765
No 8
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=8.07 E-value=96 Score=27.27 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=19.5
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
...+|||-|||..- ++||+- |.-.|+.+|
T Consensus 97 ~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVE 133 (323)
T 2isw_A 97 LGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVE 133 (323)
T ss_dssp TTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46899999999643 556654 444566664
No 9
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=8.01 E-value=97 Score=27.16 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=21.1
Q ss_pred cccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 43 TSSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 43 tssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
..-.+|||-|||..- ++|++- |.-.|+.+|
T Consensus 111 ~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVE 148 (306)
T 3pm6_A 111 EPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATE 148 (306)
T ss_dssp -CCCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 347999999999754 566653 555677776
No 10
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=7.72 E-value=1e+02 Score=27.32 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=20.1
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
.-.+|||-|||..- ++|++- |.-.|+.+|
T Consensus 123 ~GFtSVMiDgS~lp~eENi~~Tk~vv~~ah~~gvsVE 159 (349)
T 3elf_A 123 PLFQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILE 159 (349)
T ss_dssp CSCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35899999999653 556554 445577776
Done!