Query psy13184
Match_columns 285
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 22:17:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13184.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13184hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rvga_ c.1.10.2 (A:) Fructose 7.9 47 0.0034 26.6 0.5 29 44-72 94-130 (305)
2 d1xj3a1 d.110.3.2 (A:154-259) 6.6 33 0.0024 19.5 -0.8 25 56-80 9-36 (106)
3 d1gvfa_ c.1.10.2 (A:) Tagatose 6.3 63 0.0046 25.5 0.5 47 25-72 77-131 (284)
4 d1v9ya_ d.110.3.2 (A:) Direct 5.8 68 0.0049 18.3 0.3 24 56-79 20-46 (113)
5 d1oari_ b.1.1.1 (I:) Immunoglo 5.8 1E+02 0.0074 21.1 1.3 14 60-73 5-18 (103)
6 d1dosa_ c.1.10.2 (A:) Fructose 5.4 75 0.0055 25.9 0.5 27 46-72 138-172 (358)
7 d1vl6a2 c.58.1.3 (A:1-154) Mal 4.9 81 0.0059 24.1 0.3 13 65-77 122-134 (154)
8 d1n9la_ d.110.3.6 (A:) Putativ 4.8 50 0.0036 20.0 -0.9 23 59-81 21-43 (109)
9 d1a2yb_ b.1.1.1 (B:) Immunoglo 4.7 1.2E+02 0.0091 21.3 1.2 17 57-73 15-31 (116)
10 d1gula2 c.47.1.5 (A:4-80) Clas 4.5 48 0.0035 20.2 -1.1 25 52-76 8-32 (77)
No 1
>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}
Probab=7.86 E-value=47 Score=26.58 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=18.3
Q ss_pred ccccccccCCCccc-----ceeeee---ecccccccc
Q psy13184 44 SSISSVMSDGSESG-----RVTRRS---CKLSGIKLE 72 (285)
Q Consensus 44 ssissvmsdgsesg-----rvtrrs---cklsgikle 72 (285)
...+|||-|||..- +.||+- |.-.||.+|
T Consensus 94 ~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VE 130 (305)
T d1rvga_ 94 AGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVE 130 (305)
T ss_dssp TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCceEEEcCccccHHHHHHHHHHHHHHhchhceeEE
Confidence 45899999999653 445543 333455554
No 2
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=6.60 E-value=33 Score=19.50 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=17.3
Q ss_pred cccee---eeeecccccccccCCCChhh
Q psy13184 56 SGRVT---RRSCKLSGIKLEDISESPIE 80 (285)
Q Consensus 56 sgrvt---rrscklsgikledisespie 80 (285)
.|+|. ...|++.|.+.+++...++.
T Consensus 9 ~G~I~~~N~a~~~l~Gy~~~el~g~~~~ 36 (106)
T d1xj3a1 9 HGIIQLFSTAAERLFGWSELEAIGQNVN 36 (106)
T ss_dssp TSBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred CCcEEEEcHHHHHHhhhchHhhcCCCcc
Confidence 35554 56799999988876655543
No 3
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=6.30 E-value=63 Score=25.54 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=28.4
Q ss_pred ceeccccccccCCccccccccccccccCCCcc-----cceeeeeecc---cccccc
Q psy13184 25 IVQTDELTELKTPTRRTRTSSISSVMSDGSES-----GRVTRRSCKL---SGIKLE 72 (285)
Q Consensus 25 ivqtdeltelktptrrtrtssissvmsdgses-----grvtrrsckl---sgikle 72 (285)
.+..|.-..+..- ++.--...+|||-|||.. -+.||+-+++ .|+.+|
T Consensus 77 ~lHlDH~~~~e~i-~~ai~~GftSVMiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE 131 (284)
T d1gvfa_ 77 ALHLDHHESLDDI-RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 131 (284)
T ss_dssp EEEEEEECCHHHH-HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EeeeccccchHHH-HHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHHHhhcccee
Confidence 3555554333222 233345689999999965 4677776666 477665
No 4
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=5.82 E-value=68 Score=18.32 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=16.9
Q ss_pred ccce---eeeeecccccccccCCCChh
Q psy13184 56 SGRV---TRRSCKLSGIKLEDISESPI 79 (285)
Q Consensus 56 sgrv---trrscklsgikledisespi 79 (285)
.|+| .+..|+|.|...+++-.-++
T Consensus 20 ~g~i~~~N~~~~~l~Gy~~~e~~g~~~ 46 (113)
T d1v9ya_ 20 NDEVMFFNPAAEKLWGYKREEVIGNNI 46 (113)
T ss_dssp TSBEEEECHHHHHHHSCCGGGTTTSBG
T ss_pred CCCEEEEchhHhhhhccchhhhcCcce
Confidence 4665 46789999998887654444
No 5
>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.81 E-value=1e+02 Score=21.05 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=11.2
Q ss_pred eeeeeccccccccc
Q psy13184 60 TRRSCKLSGIKLED 73 (285)
Q Consensus 60 trrscklsgikled 73 (285)
.+-+|++||..+.+
T Consensus 5 l~LsC~~SG~s~~~ 18 (103)
T d1oari_ 5 VKLSCKASGYTFTS 18 (103)
T ss_dssp EEEEEECCSSCSTT
T ss_pred eEEEEEEECCChhc
Confidence 46799999987765
No 6
>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]}
Probab=5.43 E-value=75 Score=25.90 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=18.6
Q ss_pred ccccccCCCcc-----cceeeeee---cccccccc
Q psy13184 46 ISSVMSDGSES-----GRVTRRSC---KLSGIKLE 72 (285)
Q Consensus 46 issvmsdgses-----grvtrrsc---klsgikle 72 (285)
.+|||-|||.. =++||+-+ .-.||.+|
T Consensus 138 fsSVMiDgS~l~~eeNi~~Tk~vve~Ah~~gv~VE 172 (358)
T d1dosa_ 138 FSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 172 (358)
T ss_dssp CSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CccccCCCCcCCHHHHHHHHHHHHHHHhhhCCeEE
Confidence 79999999964 35566554 34577665
No 7
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=4.94 E-value=81 Score=24.07 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=9.8
Q ss_pred cccccccccCCCC
Q psy13184 65 KLSGIKLEDISES 77 (285)
Q Consensus 65 klsgikledises 77 (285)
-+.||.||||+.-
T Consensus 122 tFggInLEDI~aP 134 (154)
T d1vl6a2 122 SFGGINLEDIGAP 134 (154)
T ss_dssp GCSEEEECSCCTT
T ss_pred cccceehhhhcCc
Confidence 3568999999753
No 8
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=4.82 E-value=50 Score=20.04 Aligned_cols=23 Identities=4% Similarity=0.146 Sum_probs=16.0
Q ss_pred eeeeeecccccccccCCCChhhh
Q psy13184 59 VTRRSCKLSGIKLEDISESPIEL 81 (285)
Q Consensus 59 vtrrscklsgikledisespiel 81 (285)
|.+..|++.|...+++-..++.+
T Consensus 21 vN~a~~~~~Gy~~~El~G~~~~~ 43 (109)
T d1n9la_ 21 ASEGFYAMTGYGPDEVLGHNCRF 43 (109)
T ss_dssp ECHHHHHHHCCCHHHHTTSCGGG
T ss_pred EcHHHHHHHCcCHHHHcCCccee
Confidence 45678999999988765444333
No 9
>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
Probab=4.66 E-value=1.2e+02 Score=21.30 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=13.0
Q ss_pred cceeeeeeccccccccc
Q psy13184 57 GRVTRRSCKLSGIKLED 73 (285)
Q Consensus 57 grvtrrscklsgikled 73 (285)
|.--+-+|+.||..+.+
T Consensus 15 g~sl~LsC~~SG~s~~~ 31 (116)
T d1a2yb_ 15 SQSLSITCTVSGFSLTG 31 (116)
T ss_dssp TSCEEEEEEEESSCTTS
T ss_pred CCCeEEEEEEcccccCC
Confidence 34456799999988866
No 10
>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}
Probab=4.55 E-value=48 Score=20.19 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=19.1
Q ss_pred CCCcccceeeeeecccccccccCCC
Q psy13184 52 DGSESGRVTRRSCKLSGIKLEDISE 76 (285)
Q Consensus 52 dgsesgrvtrrscklsgikledise 76 (285)
+++--+++.|-.|...||..||+.-
T Consensus 8 ~~~g~~~~vR~~L~~~gi~ye~~~~ 32 (77)
T d1gula2 8 NGRGRMESVRWVLAAAGVEFDEEFL 32 (77)
T ss_dssp SSCTTTHHHHHHHHHTTCCCEEEEE
T ss_pred CCcchHHHHHHHHHHcCCCceEEee
Confidence 3444566788999999999998743
Done!