RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13184
(285 letters)
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 42.0 bits (98), Expect = 3e-04
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 9/134 (6%)
Query: 105 NSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTP 164
+S A+ + + ++AQ+N ++ +N P +N +NTP P +NTP
Sbjct: 384 HSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTP 443
Query: 165 KQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNN-TPKQTPGQNDTPEQ 223
+N P P +N P +NTP +N P +++ + Q+ Q
Sbjct: 444 ----YSNPPNSNPPYSNLP----YSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQ 495
Query: 224 KGQNNTPKQTPGQN 237
N P N
Sbjct: 496 PAANLPTANQPAAN 509
Score = 35.4 bits (81), Expect = 0.038
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 99 AKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTP 158
A+ + S A S + + +N +NTP P +NTP P +N P
Sbjct: 398 AQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPP---- 453
Query: 159 GQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNN-TPKQTPAQNNTPKQKGQNNTPKQTPGQ 217
+N P +NTP +N P +++ + Q+ Q N P
Sbjct: 454 -YSNLP----YSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAA 508
Query: 218 ND 219
N+
Sbjct: 509 NN 510
Score = 34.7 bits (79), Expect = 0.053
Identities = 30/136 (22%), Positives = 44/136 (32%), Gaps = 10/136 (7%)
Query: 134 PKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPK 193
P + N Q+N + G +N +N PG NN P +NTP
Sbjct: 383 PHSNASYNCAAYSNAAQSNAAQSNAGFSNAG----YSNPGNSNPGYNNAP----NSNTPY 434
Query: 194 QTPAQNNTPKQKGQNNTP--KQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPK 251
P +NTP N+ P P N +N P + + + Q+
Sbjct: 435 NNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAAN 494
Query: 252 QKGQNNTPKQTPGQND 267
Q N P N+
Sbjct: 495 QPAANLPTANQPAANN 510
Score = 33.5 bits (76), Expect = 0.15
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 177 PGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQN-NTPKQTPG 235
P N + +N + AQ+N G +N PG ++ N NTP P
Sbjct: 383 PHSNASYNCAAYSNAAQSNAAQSNA----GFSNAGYSNPGNSNPGYNNAPNSNTPYNNPP 438
Query: 236 QNKTPKQTPGQNNTP-KQKGQNNTPKQTPGQNDTPEQKGQNN 276
+ TP P +N P +NTP ++ P +++
Sbjct: 439 NSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDH 480
Score = 32.4 bits (73), Expect = 0.29
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 9/122 (7%)
Query: 158 PGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQN-NTPKQTPG 216
P N + +N + Q+N G +N P +N N NTP P
Sbjct: 383 PHSNASYNCAAYSNAAQSNAAQSNA----GFSNAGYSNPGNSNPGYNNAPNSNTPYNNPP 438
Query: 217 QNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNN 276
++TP +N P P + P +N P ++ K Q N
Sbjct: 439 NSNTP----YSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAAN 494
Query: 277 TP 278
P
Sbjct: 495 QP 496
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 15/91 (16%)
Query: 185 QKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTP 244
+ G P++TP P+ + Q P G K P NK P P
Sbjct: 1003 RVGGIEAPEKTP---PPPEHEPQAPKPPTQDP-------DGSKPKDKVDPKDNKDPLTPP 1052
Query: 245 GQNNTPKQKGQNNTPKQTPGQNDTPEQKGQN 275
G TPK + + KG N
Sbjct: 1053 G-----SDDENGETPKGNEEKKEEQPDKGAN 1078
Score = 35.2 bits (81), Expect = 0.043
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 16/93 (17%)
Query: 149 GQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQN 208
G P++TP P+ + Q P G K P N P
Sbjct: 1005 GGIEAPEKTP---PPPEHEPQAPKPPTQDP-------DGSKPKDKVDPKDNKDPL----- 1049
Query: 209 NTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPK 241
TP + +N + + +Q P
Sbjct: 1050 -TPPGSDDENGETPKGNEEKKEEQPDKGANLPN 1081
Score = 33.7 bits (77), Expect = 0.13
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 9/82 (10%)
Query: 204 QKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNK--TPKQTPGQNNTPK----QKGQNN 257
+ G P++TP PE + Q P K P N P +N
Sbjct: 1003 RVGGIEAPEKTP---PPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENG 1059
Query: 258 TPKQTPGQNDTPEQKGQNNTPK 279
+ + + N P
Sbjct: 1060 ETPKGNEEKKEEQPDKGANLPN 1081
Score = 29.8 bits (67), Expect = 1.8
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 130 QNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQK---GQNNTPRQTPGQNNTPKQK 186
P++TP P + Q P + PK K N P PG
Sbjct: 1006 GIEAPEKTP----PPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPG------SD 1055
Query: 187 GQNNTPKQTPAQNNTPKQKGQNNTPK 212
+N + + + N P
Sbjct: 1056 DENGETPKGNEEKKEEQPDKGANLPN 1081
Score = 29.4 bits (66), Expect = 2.8
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 110 PSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTP--GQNNTPKQTPGQNNTPKQK 167
P + + ++TP P + Q P G K P N P
Sbjct: 996 PLTAAVVRVGGIEAPEKTP----PPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPL-- 1049
Query: 168 GQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPK 203
TP + +N + + +Q N P
Sbjct: 1050 ----TPPGSDDENGETPKGNEEKKEEQPDKGANLPN 1081
Score = 29.1 bits (65), Expect = 3.4
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 8/95 (8%)
Query: 91 ISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTP-AQNNTPKQTPAQNNTPKQTPG 149
+ +T + + + + Q P K P N P PG
Sbjct: 994 LDPLTAAVVRVGGIEAPEKTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPG 1053
Query: 150 QNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPK 184
+ + ++K + + N P
Sbjct: 1054 ---SDDENGETPKGNEEKKEEQPDK----GANLPN 1081
Score = 28.7 bits (64), Expect = 5.0
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 235 GQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTRT 283
G + P++TP P+ + Q P P+ K K T
Sbjct: 1005 GGIEAPEKTP---PPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLT 1050
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 37.9 bits (89), Expect = 0.005
Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 1/144 (0%)
Query: 88 KQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQT 147
K S+V + A+K A + A +++ +
Sbjct: 32 KSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAA 91
Query: 148 PGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQ 207
P + + + ++ + PK K + K KG+
Sbjct: 92 AEAAARPAE-DEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGR 150
Query: 208 NNTPKQTPGQNDTPEQKGQNNTPK 231
+ + +QK P+
Sbjct: 151 RRRRGRRRRRKKKKKQKPTEKIPR 174
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 37.1 bits (86), Expect = 0.009
Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 11/145 (7%)
Query: 66 LSGIKLEDISESPIELLGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSK 125
L+ I+L +++ + G R PKQ I V PA A P S + ++ + +
Sbjct: 354 LTLIQLAQLTQKGDDASGGRGPKQHIKPVFTQPA--------AAPQPSAAAAASPSPSQS 405
Query: 126 QTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQ 185
AQ + P+ TP + P+ + +
Sbjct: 406 SAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKK---IPVSK 462
Query: 186 KGQNNTPKQTPAQNNTPKQKGQNNT 210
P Q + G
Sbjct: 463 VSSLGPSTLRPIQEKAEQATGNIKE 487
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 36.8 bits (85), Expect = 0.010
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 143 TPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTP 202
+ +Q P + G + P+ + + + Q++ P ++ QN + + Q+
Sbjct: 441 SDQQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQQNRSNQNNQRQSQ-- 495
Query: 203 KQKGQNNTPKQTPGQNDTPE-QKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQ-NNTPK 260
G N P+ G N P + Q Q N P + GQ + +Q+ Q
Sbjct: 496 ---GPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARGN 552
Query: 261 QTPGQNDTPEQKGQNNTPKQTR 282
Q+ Q G+ N + R
Sbjct: 553 QSRTPGPGRGQGGRGNQNRNQR 574
Score = 36.4 bits (84), Expect = 0.015
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 9/147 (6%)
Query: 123 TSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNT 182
+ +Q P + + P+ Q N +Q+ + + N RQ+ G N
Sbjct: 441 SDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQG 500
Query: 183 PKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTP-EQKGQNNTPKQTPGQNKTPK 241
P+ +G N +T P++ G Q N P Q GQ + +Q P
Sbjct: 501 PRGQGGYNLRPRT----YQPQRYGGG----QGRRWNPNPYRQSGQGRSQQQQPQPEARGN 552
Query: 242 QTPGQNNTPKQKGQNNTPKQTPGQNDT 268
Q+ Q G+ N + N+T
Sbjct: 553 QSRTPGPGRGQGGRGNQNRNQRSGNNT 579
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 36.6 bits (85), Expect = 0.012
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 167 KGQNNTPRQTPGQNNTPKQKGQNNTPKQTP---AQNNTPKQKGQNNTPKQTPGQNDTPEQ 223
G+N +Q +K + K A + Q KQ + ++
Sbjct: 5 NGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKK 64
Query: 224 KGQNNTPKQTPGQNKTP----KQTPGQNNTPKQKGQNNTPKQTPGQ 265
K + + Q+N+ +K N ++
Sbjct: 65 KKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQT 110
Score = 30.1 bits (68), Expect = 1.5
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 12/109 (11%)
Query: 119 AQNNTSKQTPAQNNTPKQTPAQNNTPKQT----------PGQNNTPKQTPGQNNTPKQKG 168
+ Q N K T +N K+ N + N K+K
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 169 QNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQ 217
+ + + Q+N+ +K N ++
Sbjct: 64 KKKKKKNLGEAYDLAYDLP--VVWSSAAFQDNSHIRKLGNWPEQEWKQT 110
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 36.3 bits (84), Expect = 0.013
Identities = 29/154 (18%), Positives = 41/154 (26%), Gaps = 7/154 (4%)
Query: 128 PAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTP----GQNNTP 183
P Q P P T P Q+NTP N P T
Sbjct: 53 PQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTI 112
Query: 184 KQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQT 243
+ + P Q P + P Q ++ G + + Q K
Sbjct: 113 QTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKND 172
Query: 244 PGQNNTPKQKGQNNTPKQTPGQ-NDTPEQKGQNN 276
Q +Q P+QT G +D E +
Sbjct: 173 ESQL--QQQPNGETPPQQTDGAGDDESEALVRLR 204
Score = 33.6 bits (77), Expect = 0.11
Identities = 34/199 (17%), Positives = 49/199 (24%), Gaps = 21/199 (10%)
Query: 94 VTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNN--TPKQTPAQNNTPKQTPGQN 151
V + P T + D Q+NT +PA N T QT
Sbjct: 59 VAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQ 118
Query: 152 NTPKQTPGQNNTPKQKGQNNTPRQTP--------------GQNNTPKQKGQNNTPKQTPA 197
P Q P + P Q GQ + +Q Q N Q
Sbjct: 119 LYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQ 178
Query: 198 QNNTPKQKGQ-----NNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQ 252
Q N Q ++ + + Q + G K KQ Q + K+
Sbjct: 179 QPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLKQPKKQAKSSKR 238
Query: 253 KGQNNTPKQTPGQNDTPEQ 271
+
Sbjct: 239 RTIAQIDGIDSDDEGDGSD 257
Score = 29.7 bits (67), Expect = 1.9
Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 5/103 (4%)
Query: 169 QNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNN 228
+ Q P + Q + + +P P
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110
Query: 229 TPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQ 271
T + PGQ + P N+P P Q +Q
Sbjct: 111 TIQTEPGQLYPVQVPVMVTQNPA-----NSPLDQPAQQRALQQ 148
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 35.3 bits (81), Expect = 0.032
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 87 PKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQ 146
P Q +++ + +TV+ P + SA+ ++ P +P + PA N P++
Sbjct: 292 PVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPEAQPLPEV--SPAENPANNPNPRE 349
Query: 147 TPGQNNTPKQTPGQN--NTPKQKGQNNTPRQTPGQNNTP 183
PG P+ P N P GQ T +P + P
Sbjct: 350 NPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRP 388
Score = 31.9 bits (72), Expect = 0.34
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 134 PKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQK-GQNNTPRQTPGQN--NTPKQKGQNN 190
P TP P+ P +P + P N P++ G P P N P GQ
Sbjct: 317 PDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPG 376
Query: 191 TPKQTPAQNNTP 202
T +PA + P
Sbjct: 377 TRPDSPAVPDRP 388
Score = 31.9 bits (72), Expect = 0.36
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 144 PKQTPGQNNTPKQTPGQNNTPKQKGQNN-TPRQTPGQNNTPKQKGQNNTPKQTPAQNNTP 202
P TPG P+ P +P + NN PR+ PG P+ P P N P
Sbjct: 317 PDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEP-----DPDLNPDAN--P 369
Query: 203 KQKGQNNTPKQTPGQNDTP 221
GQ T +P D P
Sbjct: 370 DTDGQPGTRPDSPAVPDRP 388
Score = 30.3 bits (68), Expect = 1.4
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 206 GQNNTPKQTPGQNDTPEQKGQNN-TPKQTPGQNKTPKQTPGQN--NTPKQKGQNNTPKQT 262
G P+ P +P + NN P++ PG P+ P N P GQ T +
Sbjct: 322 GSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDS 381
Query: 263 PGQNDTP 269
P D P
Sbjct: 382 PAVPDRP 388
Score = 29.6 bits (66), Expect = 1.9
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 173 PRQTPGQNNTPKQKGQNN-TPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPE-QKGQNNTP 230
P TPG P+ + +P + PA N P++ P P + P+ + P
Sbjct: 317 PDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTR-PNPEPDPDLNPDANPDTDGQP 375
Query: 231 KQTPGQNKTPKQTPGQNNTPKQKGQN 256
P P + G++ +++G++
Sbjct: 376 GTRPDSPAVPDRPNGRHRKERKEGED 401
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.9 bits (80), Expect = 0.048
Identities = 24/162 (14%), Positives = 42/162 (25%), Gaps = 3/162 (1%)
Query: 110 PSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQ 169
P+ ++ +S ++ S PA PA P +P P + P G
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 170 NNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNT 229
G + + A+ P + + ++ +
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP 2905
Query: 230 PKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQ 271
+ Q P Q Q P Q P P + P
Sbjct: 2906 ERPPQPQAPPPPQPQPQ---PPPPPQPQPPPPPPPRPQPPLA 2944
Score = 30.3 bits (68), Expect = 1.4
Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 1/135 (0%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
D + S+ A+ P + P + + P Q P Q P+
Sbjct: 2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
Query: 177 PGQNNTPKQKGQNNTPKQTPAQ-NNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPG 235
P P+ + P + T G P G+ P+
Sbjct: 2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP 2980
Query: 236 QNKTPKQTPGQNNTP 250
Q ++ P + P
Sbjct: 2981 QPAPSREAPASSTPP 2995
Score = 30.3 bits (68), Expect = 1.5
Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 15/135 (11%)
Query: 82 LGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDS---------AQNNTSKQTPAQNN 132
+ RR P +S ++ PA+ V A P+ S S +S P Q
Sbjct: 2862 VRRRPPSRSPAAKPAAPARPP-VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
Query: 133 TPKQTPAQNNTPKQTPGQNNTPKQ-TPGQNNTPKQKGQNNTPRQ---TPGQNNTPK-QKG 187
P Q P P + P T + G P PG+ P+ +
Sbjct: 2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP 2980
Query: 188 QNNTPKQTPAQNNTP 202
Q ++ PA + P
Sbjct: 2981 QPAPSREAPASSTPP 2995
Score = 29.9 bits (67), Expect = 1.9
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 7/181 (3%)
Query: 84 RRKPKQSISSVT-KTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNN 142
RR + +++S++ + S + P+ + +A + P
Sbjct: 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT--- 2837
Query: 143 TPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTP 202
P PG G + R + P + + PA + +
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRST 2895
Query: 203 KQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQT 262
+ + P Q P Q P Q + P P + P +
Sbjct: 2896 ESFALPPDQPERPPQPQAPPPP-QPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954
Query: 263 P 263
P
Sbjct: 2955 P 2955
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 34.7 bits (80), Expect = 0.059
Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTP-RQTPGQNNTP 183
Q PAQ P Q P Q +Q + + P P+Q+ Q P Q P QN
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 184 KQKG---QNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNK 238
G N P P Q Q ++ P + Q Q + + K
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAK 341
Score = 32.4 bits (74), Expect = 0.27
Identities = 27/165 (16%), Positives = 37/165 (22%), Gaps = 6/165 (3%)
Query: 119 AQNNTSKQTPAQNNTPKQTPAQNNTP--KQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
Q + P + Q P Q P + Q P Q
Sbjct: 176 PQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235
Query: 177 PGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQ 236
Q P Q+ Q Q + Q + Q P Q Q P
Sbjct: 236 LPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQ---QQPPQPQAQPPPQ-NQPTPHPGLPQG 291
Query: 237 NKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQT 281
P P Q Q ++ P + Q Q +
Sbjct: 292 QNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALS 336
Score = 31.7 bits (72), Expect = 0.54
Identities = 30/156 (19%), Positives = 42/156 (26%), Gaps = 17/156 (10%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPK 184
Q P + Q P Q P Q P Q P Q P Q+ Q Q
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPP-PLQQPQFPGLSQQMPPP---- 258
Query: 185 QKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTP 244
P Q P Q P Q Q P Q +GQN P
Sbjct: 259 -------PPQPPQQQQQPPQP-QAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQ 310
Query: 245 GQN----NTPKQKGQNNTPKQTPGQNDTPEQKGQNN 276
Q +++ + +Q + ++ +
Sbjct: 311 PQGQQRGPQFREQLVQLSQQQREALSQEEAKRAKRR 346
Score = 30.1 bits (68), Expect = 1.3
Identities = 39/170 (22%), Positives = 50/170 (29%), Gaps = 15/170 (8%)
Query: 119 AQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPG 178
AQ +Q P P+Q Q P+Q P + P P Q Q
Sbjct: 161 AQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFL 220
Query: 179 QNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNT--------PKQTPGQNDTPEQKGQNNTP 230
+ Q P Q P Q P Q+ Q P Q P Q P Q P
Sbjct: 221 PAPSQAPA-QPPLPPQLPQQPP-PLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPP 278
Query: 231 KQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQ 280
+ P + Q GQN Q P+ P Q+ +Q
Sbjct: 279 QNQPTPHPGLPQ--GQNAPLPPPQQ---PQLLPLVQQPQGQQRGPQFREQ 323
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 33.7 bits (77), Expect = 0.12
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 93 SVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNN 152
S+T + + V + T +++T SA +NTS + +T Q T +P
Sbjct: 765 SITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSP-- 822
Query: 153 TPKQTPGQNNTP 164
T +P Q +T
Sbjct: 823 TQTTSPTQTSTS 834
Score = 28.3 bits (63), Expect = 5.6
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 17 TPGRSRKSIVQTDELTELKTPTRRTRTSSISSVMSDGSESGRVTRRSCKLSGIKLEDISE 76
T R + I+ T T T T+ + + + + S + I +E S
Sbjct: 747 TTKRVKVRIMDPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYS--NTSILIETTSV 804
Query: 77 SPIELLGRRKPKQSISSVTKTPAKKSTVNSTAT---PSQSTSI 116
+ + + + S S T+T + T ST T PSQ+T+
Sbjct: 805 VITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTG 847
Score = 27.9 bits (62), Expect = 8.2
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 90 SISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNT 143
SI T + TV T T + S S + T T T +P+Q T
Sbjct: 796 SILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT---SPSQTTT 846
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 33.4 bits (76), Expect = 0.15
Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 6/186 (3%)
Query: 6 TRKSLAESATSTPGRSRKSIVQTDELTELKTPTRRTRTSSISSVMSDGSESGRVTRRSCK 65
+ K L + P ++ + + +TP S + + +
Sbjct: 220 SSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHH 279
Query: 66 LSGIKLEDISESPIELLGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSK 125
D IE++ K SS + +K++T NS++ + S S+++
Sbjct: 280 SKHA---DSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHS 336
Query: 126 QTPAQNNTPKQTPAQNNT-PKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPK 184
N++PK + N + P + N + ++ ++++ + + + N T +
Sbjct: 337 NRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDAS--GMSANGTVE 394
Query: 185 QKGQNN 190
N
Sbjct: 395 NCIPEN 400
Score = 32.2 bits (73), Expect = 0.38
Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 6/163 (3%)
Query: 98 PAKKSTVNSTATPSQSTSIDSAQNNTSKQTPA---QNNTPKQTPAQNNTPKQTPGQNNTP 154
KS+ + T S ++ + Q + N+ K ++ T + +N
Sbjct: 241 SLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKS 300
Query: 155 KQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQT 214
+ + N K+ N++ + + + ++ N++PK N +
Sbjct: 301 RPSSSSTNGSKETTSNSS---SAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPS 357
Query: 215 PGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNN 257
+D ++ + + +K N T + N
Sbjct: 358 SSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENCIPEN 400
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 32.3 bits (73), Expect = 0.25
Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 5/193 (2%)
Query: 85 RKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTP 144
++PK ++++ T + V+ PSQ T +Q T A N + T
Sbjct: 166 KEPKTAVTTSKTTS-WPTEVSHPTYPSQVTP--QSQPATQGHQTATANQRLSSTEPVGTQ 222
Query: 145 KQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPK-QTPAQNNTPK 203
T N P+ P + G P T Q+ + GQ +T + +TP + +
Sbjct: 223 GTTTSSNPEPQTEPPPSQRGPS-GSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRR 281
Query: 204 QKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTP 263
TP T + +T + Q+ Q N Q + P
Sbjct: 282 SPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPP 341
Query: 264 GQNDTPEQKGQNN 276
N G N
Sbjct: 342 KPNSICYGVGIYN 354
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 32.7 bits (74), Expect = 0.27
Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 1/168 (0%)
Query: 89 QSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTP 148
S SS + + S+ T S +S + S + +N + + +N+P+
Sbjct: 124 SSSSSSISSSLTNISFFSSPTSIYSCLSNSLSSKHSPKVIKENQSTHVNISSDNSPRNKE 183
Query: 149 GQNNTPKQTPGQNNTPKQKGQNNTPRQT-PGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQ 207
N K+ +T +PR T +NNT + + N K + + K
Sbjct: 184 ISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQT 243
Query: 208 NNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQ 255
+++ QN + + + K+ K + K+K Q
Sbjct: 244 KRNSEKSKVQNSHFDVRILRSYTKENKKDEKNVVSGIRSSVLLKRKSQ 291
Score = 28.0 bits (62), Expect = 7.2
Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 17/281 (6%)
Query: 20 RSRKSIVQTDELTELKTPTRRTRTSSISSVMSDGSESGRVTRRSCKLSGIKLEDISESPI 79
RS+ I D +T ++ + + SS S S S + I +S S
Sbjct: 97 RSKTPIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIY-SCLSNSLS 155
Query: 80 ELLGRRKPKQSISSV----TKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPK 135
+ K++ S+ + + +++ Q+ + + +++P +T K
Sbjct: 156 SKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIK 215
Query: 136 QTPAQNNTPKQTPGQNNTPKQTPG----QNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNT 191
N K N K G + N+ K K QN+ ++ T + K
Sbjct: 216 NNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKN 275
Query: 192 PKQTPAQNNTPKQKGQN-------NTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTP 244
+ K+K Q + Q + P+ N + T
Sbjct: 276 VVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGSSNSNNDDTSSSNH 335
Query: 245 GQNNTPKQKGQNNTPKQTPGQNDT-PEQKGQNNTPKQTRTF 284
+N + ++ K+ T + + N K T+ F
Sbjct: 336 LGSNRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKF 376
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 32.4 bits (73), Expect = 0.34
Identities = 24/96 (25%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPK 184
Q P Q P+Q Q P Q P+Q Q Q P Q P+
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAP---QPQYQQPQQPVAPQPQYQQPQ 808
Query: 185 QKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDT 220
Q Q P Q P+ + Q P DT
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDT 844
Score = 31.6 bits (71), Expect = 0.49
Identities = 28/112 (25%), Positives = 35/112 (31%), Gaps = 1/112 (0%)
Query: 134 PKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPK-QKGQNNTP 192
P Q P Q P+Q Q P Q P+Q Q P Q P+ Q Q P
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 193 KQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTP 244
Q P+Q Q P Q P+ + P + P P
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKP 862
Score = 30.8 bits (69), Expect = 0.89
Identities = 29/131 (22%), Positives = 39/131 (29%), Gaps = 10/131 (7%)
Query: 71 LEDISESPIELLGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQ 130
L+D SP++ L P + P V P Q + Q Q P
Sbjct: 724 LDDFEFSPMKALLDDGPHE--------PLFTPIVEPVQQPQQPVA--PQQQYQQPQQPVA 773
Query: 131 NNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNN 190
Q P Q P+ Q P Q P+Q Q P Q P+ + Q
Sbjct: 774 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 833
Query: 191 TPKQTPAQNNT 201
P +T
Sbjct: 834 QQPVAPQPQDT 844
Score = 30.4 bits (68), Expect = 1.3
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 173 PRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQ 232
P Q P Q P+Q+ Q P+Q A +Q Q P+ Q P Q
Sbjct: 751 PVQQPQQPVAPQQQYQ--QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ 808
Query: 233 TPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDT 268
P + Q P Q P+ + Q P DT
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDT 844
Score = 29.7 bits (66), Expect = 2.0
Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 4/113 (3%)
Query: 173 PRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQ 232
P P Q+ + Q N P Q P Q P P Q P PEQ Q
Sbjct: 377 PEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAP 436
Query: 233 TPGQNKTPKQ----TPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQT 281
P Q P+ Q Q P + Q+ Q +
Sbjct: 437 APEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489
Score = 29.3 bits (65), Expect = 2.7
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 192 PKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPK 251
P Q P Q P+Q+ Q P +Q Q P+ Q + P Q P+
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQY--QQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ 808
Query: 252 QKGQNNTPKQTPGQNDTPEQKGQNNTP 278
Q Q P Q P+ + Q
Sbjct: 809 QPVAPQPQYQQPQQPVAPQPQYQQPQQ 835
Score = 28.5 bits (63), Expect = 5.7
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 173 PRQTPG--QNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTP 230
P TP P+Q Q P Q P+ + Q P+Q +Q Q P
Sbjct: 743 PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQ--PQQPVAPQPQYQQPQQPVAP 800
Query: 231 KQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPE 270
+ Q + P Q P+Q Q P Q P+
Sbjct: 801 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 840
Score = 27.7 bits (61), Expect = 8.2
Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 153 TPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPK 212
TP P Q P+Q Q P Q P+ + Q P+Q A +Q Q P+
Sbjct: 746 TPIVEPVQ--QPQQPVAPQQQYQQPQQPVAPQPQYQQ--PQQPVAPQPQYQQPQQPVAPQ 801
Query: 213 QTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPK 251
Q P Q P + Q P Q P+
Sbjct: 802 PQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ 840
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 31.9 bits (72), Expect = 0.44
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 135 KQTPAQNNTPKQTPGQNNTPKQTPGQNNT--PKQKGQNNTPRQTPGQNNTPKQKGQN--N 190
++ P + + ++ G + + P NN N R+ N
Sbjct: 480 RRGPRRESKSQEPSGGESPNPELPANNNNSNSNNNNNNGADRKEAAATTGNATTTSNGSG 539
Query: 191 TPKQTPAQNNTPKQKG 206
T P + P+ K
Sbjct: 540 TSVPLPVSSEPPQHKE 555
Score = 30.3 bits (68), Expect = 1.1
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 154 PKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNT--PKQKGQNNTP 211
K++ ++G+ PR+ ++ + + G + + PA NN N
Sbjct: 464 AKESKEAAGEEAREGRRRGPRR---ESKSQEPSGGESPNPELPANNNNSNSNNNNNNGAD 520
Query: 212 KQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTP 250
++ N + T + P P
Sbjct: 521 RKEAAATTGNATTTSNGS--GTSVPLPVSSEPPQHKEGP 557
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 31.6 bits (71), Expect = 0.57
Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 13/180 (7%)
Query: 87 PKQSISSVTKTPAKKSTVNSTATPS-QSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPK 145
P+ I+ T + + +P+ +T + + Q P + TP + PA
Sbjct: 655 PQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRA 714
Query: 146 QTPGQNNTPKQTPGQNNTPKQK-----GQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNN 200
Q P + P + G+ P PG+ P P
Sbjct: 715 QRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAP 774
Query: 201 TPKQKGQNN-TPKQTPGQNDTPEQKGQNN------TPKQTPGQNKTPKQTPGQNNTPKQK 253
TP+ Q P+Q P TP+ Q P+ PGQ KQ Q T K
Sbjct: 775 TPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVK 834
Score = 29.3 bits (65), Expect = 3.3
Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 6/198 (3%)
Query: 83 GRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNN 142
P S + P +S + T+ P Q + P +
Sbjct: 594 QTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQ 653
Query: 143 TPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTP 202
P+ G NT T + + TP + PA
Sbjct: 654 PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGR 713
Query: 203 KQKGQNNT-----PKQTPGQNDTPE-QKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQN 256
Q+ T P PG+ P G+ P PG+ + P PG+ P
Sbjct: 714 AQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGA 773
Query: 257 NTPKQTPGQNDTPEQKGQ 274
TP+ P P+Q+ +
Sbjct: 774 PTPQPPPQAPPAPQQRPR 791
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 31.3 bits (70), Expect = 0.66
Identities = 43/274 (15%), Positives = 73/274 (26%), Gaps = 8/274 (2%)
Query: 13 SATSTPGRSRKSIVQTDELTELKTPTRRTRTSSISSVMSDGSESGRVTRRSCKLSGIKLE 72
S T++ + S +PT + + + ++ G T + +G
Sbjct: 490 SRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSV 549
Query: 73 DISESPIELLGRRKPKQSISSVTKTPA---KKSTVNSTATPSQSTSIDSAQNNTSKQTPA 129
+ SP + VT P+ T T S TS ++S TP
Sbjct: 550 PNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPR 609
Query: 130 QNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQN 189
N+T + P P + +P PG + G +
Sbjct: 610 SNSTSTTPLLTSAHPTGGENITEETPSVPSTTHV-----STLSPGPGPGTTSQVSGPGNS 664
Query: 190 NTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNT 249
+T + + T N T P T + K +T T + +
Sbjct: 665 STSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTS 724
Query: 250 PKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTRT 283
P P P+ T T
Sbjct: 725 PHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFT 758
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 31.3 bits (70), Expect = 0.68
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Query: 88 KQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQT 147
K +I T K+ V + A ++ + + NT+ T K+T Q T +
Sbjct: 240 KLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTAT--TEKKETTTQQQTAPKA 297
Query: 148 PGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQ 207
P + P P N + N +TP + NT T +NT +G
Sbjct: 298 PTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGS 357
Query: 208 NN 209
+N
Sbjct: 358 SN 359
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 30.2 bits (68), Expect = 0.74
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 113 STSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNT 172
+ + +S Q SK Q N + N PG N P Q P N N
Sbjct: 96 TITAESMQMLDSKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYMNQAQS---YNQN 152
Query: 173 PRQTPGQNNTPKQKGQN 189
Q P + +
Sbjct: 153 AYAKENQQAQPPKYENS 169
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.0 bits (70), Expect = 0.75
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 188 QNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQN 247
Q NTP QTP + + Q + + E+ TP QTP + Q P
Sbjct: 263 QKNTPAQTPMPERSWQTPAQTPARRISTPM---TEEIKSWQTPLQTPAMYSSDYQAPKPE 319
Query: 248 N--TPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTR 282
T ++ + P + P+ + + TR
Sbjct: 320 PIYTWEELLRERFPSDLFAISSLPDSDSEASDSGPTR 356
>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
protein.
Length = 314
Score = 30.6 bits (69), Expect = 0.89
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 79 IELLGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTP 138
I L ++ S S KT +KKST N ++ Q I + N K P ++T
Sbjct: 52 IPALSWKRLVASGSKKKKT-SKKSTANLASSSYQKIVIQLNRENLKKSVPRPSDTTLSCA 110
Query: 139 AQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQ 198
++ + +PGQ P + K N P Q + G +P++ Q
Sbjct: 111 NLSSLREPSPGQPPAPPPSVLSG-----KNANCIPSQKNAPSIAITSTGG--SPRRVIVQ 163
Query: 199 NNT 201
+T
Sbjct: 164 AST 166
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 30.4 bits (69), Expect = 0.95
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 111 SQSTSIDSAQNNTS-----KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTP---GQNN 162
QS++ S + S T TP + TP + P Q N
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207
Query: 163 T---PKQKGQNNTPRQTPGQNNTP 183
P Q + P TP
Sbjct: 208 AVVAPSQANVDTAATPAPAAPATP 231
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
Query: 102 STVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQN 161
+T + TP+ + +D+ N+ A P Q N N TP
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAP-AVDPQQNAVVAPSQANVDTAATPAPA 226
Query: 162 NTPKQKGQNNTPRQTPGQNNTP 183
G P G +
Sbjct: 227 APATPDGAAPLPTDQAGVSTPA 248
Score = 28.1 bits (63), Expect = 4.9
Identities = 12/62 (19%), Positives = 19/62 (30%)
Query: 97 TPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQ 156
TPA + V++T T SQ+ ++ +A P Q
Sbjct: 175 TPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGA 234
Query: 157 TP 158
P
Sbjct: 235 AP 236
Score = 28.1 bits (63), Expect = 5.7
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 117 DSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQT 176
SA+ + + +T T TP + TP + P
Sbjct: 150 SSAELSQNSGQSVPLDT-STTTDPATTPAPAAPVDTTPTNSQTPAVAT-----APAPAVD 203
Query: 177 PGQNN--TPKQKGQNNTPKQTPAQNNTP 202
P QN P Q + PA TP
Sbjct: 204 PQQNAVVAPSQANVDTAATPAPAAPATP 231
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.8 bits (69), Expect = 1.00
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 2 SPRRTRKSLAESATSTPGRSRKSIVQTD---ELTELKTPTRRTR--TSSISSVMSDGSES 56
S +R K + + +V D + KTP R R ++ S V + +E
Sbjct: 76 SVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEK 135
Query: 57 GRVTRRSCK 65
RR K
Sbjct: 136 KVRKRRKVK 144
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 30.5 bits (69), Expect = 1.1
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 5/128 (3%)
Query: 106 STATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPK 165
T Q +I N+ + PA++ K+ + N P +P K
Sbjct: 63 DTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAK 122
Query: 166 QKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKG 225
+ G + PG T + + + K+T A + + P PE++
Sbjct: 123 EHGID--LSAVPGTGVTGRVTKE-DIIKKTEAPASAQQPAPAAAAK--APANFTRPEERV 177
Query: 226 QNNTPKQT 233
+ +Q
Sbjct: 178 KMTRLRQR 185
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 30.4 bits (68), Expect = 1.3
Identities = 33/171 (19%), Positives = 52/171 (30%), Gaps = 2/171 (1%)
Query: 106 STATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNT--PKQTPGQNNTPKQTPGQNNT 163
+ P Q + + + Q Q ++ + Q N P+Q Q GQ
Sbjct: 128 AGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGP 187
Query: 164 PKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQ 223
Q+ + Q Q P QN +Q+ QN +Q Q +
Sbjct: 188 VGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADA 247
Query: 224 KGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKGQ 274
+ Q +Q G + + GQ P Q+ Q P Q Q
Sbjct: 248 QAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQ 298
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 30.2 bits (68), Expect = 1.5
Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 6/106 (5%)
Query: 126 QTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQ-----TPGQNNTPKQKGQNNTPRQTPGQN 180
Q P Q + + TP P + P + QN +
Sbjct: 403 QGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPV 462
Query: 181 NTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQ 226
P + P +T Q GQN Q + TP+ + Q
Sbjct: 463 MYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVL-ASATPQMQKQ 507
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 29.8 bits (67), Expect = 1.7
Identities = 20/150 (13%), Positives = 35/150 (23%), Gaps = 22/150 (14%)
Query: 96 KTPAKKSTVNSTATPSQSTSID-------------SAQNNTSKQTPAQNNTPKQTPAQNN 142
P K+ P + D + Q + Q+ + P +
Sbjct: 37 DRPLKRMKSKRDDDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYAS 96
Query: 143 TPKQTPGQNNTPKQTPGQNNTPKQKGQ-----NNTPRQTPGQNNTPKQKGQNNTPKQTPA 197
+ P P + P Q RQ P + ++ Q
Sbjct: 97 AQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAV 156
Query: 198 QN---NTPKQKGQNNTPKQTPGQNDTPEQK 224
Q P+Q+ Q P +
Sbjct: 157 QTVQPAVPEQQVQPE-EVVEPAPEVKRPPR 185
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 29.8 bits (68), Expect = 1.7
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 198 QNNTPKQKGQNNTPKQTPG--QNDTPEQKGQNNTPKQTPGQNKT 239
Q GQ P PG N P Q + T +++
Sbjct: 294 QTVEETSTGQGGNPGGVPGALSNQPPNQAQGADGGNSTSSSSRS 337
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 30.1 bits (68), Expect = 1.8
Identities = 15/141 (10%), Positives = 32/141 (22%)
Query: 125 KQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPK 184
+ + A + + G P P + P
Sbjct: 652 APPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPP 711
Query: 185 QKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTP 244
+ NN + + + + EQ+ + Q Q+
Sbjct: 712 WEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTAL 771
Query: 245 GQNNTPKQKGQNNTPKQTPGQ 265
Q ++ Q + N + G
Sbjct: 772 TQTSSEVQDTELNLVLLSSGS 792
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 29.8 bits (67), Expect = 1.8
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 94 VTKTPAKKSTVNSTATPS-QSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNN 152
+TKT K+ V + ++ P +N P Q + + P + +
Sbjct: 83 LTKTFEDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVST 142
Query: 153 TPKQTPGQNNTPKQKGQNNT 172
+ P TP QK + T
Sbjct: 143 PEVKAPAPALTPSQKDRLET 162
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 193 KQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQ 252
++ P + K + + PG PE+ + + G + +
Sbjct: 310 RRKPFEQPQGKDEKDLEEKPEEPG--PDPEKPDEGEDDAEQSG-----PRGHPTPGNDDE 362
Query: 253 KGQNNTPKQTPGQNDT 268
K + + + T
Sbjct: 363 KEPDPQEEADGQGSST 378
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 29.5 bits (66), Expect = 2.7
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 2/166 (1%)
Query: 3 PRRTRKSLAESATSTPGRSRKSIVQTDELTELKTPTRRTRTSSISSVMSDGSESGRVTRR 62
++T K+ +E ++S R K+ + + E K ++SS S S +
Sbjct: 733 KKQTSKTASEKSSSKGKRKHKND-EEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKE 791
Query: 63 SCKLSGIKLEDISESPIELLGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDSA-QN 121
S K S K E++ SP L PK S + ++ T +S+ S S++ S+ +
Sbjct: 792 SRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFSASSTKSSSKSS 851
Query: 122 NTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQK 167
+TSK + + + TP + ++ P N + K +
Sbjct: 852 STSKHRKTEGKGSSTSKEHKGSSGDTPNKASSFPVPPLSNGSSKPR 897
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 28.9 bits (64), Expect = 3.4
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 134 PKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQ 185
P Q P N +Q QN + P Q Q TP+ Q +Q
Sbjct: 203 PTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 29.0 bits (65), Expect = 3.5
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 2/105 (1%)
Query: 124 SKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTP 183
S T + N+ + + + TP P N + N + P N P
Sbjct: 23 SCSTTSSNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTN-P 81
Query: 184 KQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNN 228
++K + K+ + +K P N +Q N
Sbjct: 82 EKKPDPSKNKEEIEKPKDEPKKPDKKPQADQP-NNVHADQPNNNK 125
Score = 27.9 bits (62), Expect = 6.6
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 161 NNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDT 220
+ P++K + TP PK+ + ++N + +N + + D
Sbjct: 31 SKQPEKKPEIKPNENTPK---IPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDP 87
Query: 221 PEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNN 257
+ K + PK P + Q NN + NN
Sbjct: 88 SKNKEEIEKPKDEPKKPDKKPQADQPNNVHADQPNNN 124
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 28.8 bits (64), Expect = 3.9
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 124 SKQTPAQNNTPKQT--PAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNN 181
+ Q P +NTP T P N+ Q Q +T P N++ + PG
Sbjct: 364 ATQVPNPDNTPTTTAVPGITNSSNQGDPQASTFNGVPNANSSGFAAHTQDLSSVIPGWTM 423
Query: 182 TPKQK-GQNNTPKQTPAQNNTPKQKGQNNT 210
P + + T + TP +N+
Sbjct: 424 LPIPGTRRISQSTSTTNPSATPTTGDPSNS 453
Score = 28.8 bits (64), Expect = 4.0
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 190 NTPKQTPAQNNTPKQK--GQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQN 247
+ TPA N + Q P TP P G N+ Q Q T P N
Sbjct: 347 DQSSPTPASPNVRNTQIATQVPNPDNTPTTTAVP---GITNSSNQGDPQASTFNGVPNAN 403
Query: 248 NTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTRT 283
++ + PG P + + + T
Sbjct: 404 SSGFAAHTQDLSSVIPGWTMLPIPGTRRISQSTSTT 439
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 28.6 bits (64), Expect = 4.1
Identities = 11/74 (14%), Positives = 24/74 (32%)
Query: 193 KQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNNTPKQ 252
K P QN ++ G GQ ++G+ + + P + G +
Sbjct: 383 KAEPIQNGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGE 442
Query: 253 KGQNNTPKQTPGQN 266
+ + P++
Sbjct: 443 QQRRRRPRKPAAAQ 456
Score = 27.5 bits (61), Expect = 8.8
Identities = 11/74 (14%), Positives = 22/74 (29%)
Query: 155 KQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQT 214
K P QN ++ G GQ ++G+ + P ++ + P
Sbjct: 383 KAEPIQNGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGE 442
Query: 215 PGQNDTPEQKGQNN 228
+ P +
Sbjct: 443 QQRRRRPRKPAAAQ 456
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 28.6 bits (64), Expect = 4.4
Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 10/191 (5%)
Query: 88 KQSISSVTKTPAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQT 147
K S + T +KKS + T+ + S D A NN + + + +
Sbjct: 32 KDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNI 91
Query: 148 PGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNN-------TPKQKGQNNTPKQTPAQNN 200
N + ++ T N + N+ K T N
Sbjct: 92 IDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNK 151
Query: 201 TPKQKGQNNTPKQTPGQNDTPEQKGQNNT---PKQTPGQNKTPKQTPGQNNTPKQKGQNN 257
+N+T Q+ Q+ QK ++ P + Q +PK T + + +
Sbjct: 152 NSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDT 211
Query: 258 TPKQTPGQNDT 268
+++ +++
Sbjct: 212 ANQKSSSKDNQ 222
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 28.1 bits (63), Expect = 4.6
Identities = 15/76 (19%), Positives = 21/76 (27%)
Query: 151 NNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNT 210
N Q P +Q+ Q P T Q Q P Q Q T
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVT 167
Query: 211 PKQTPGQNDTPEQKGQ 226
+ + ++K Q
Sbjct: 168 QAVEAPKVEAEKEKEQ 183
Score = 27.3 bits (61), Expect = 9.4
Identities = 13/75 (17%), Positives = 18/75 (24%)
Query: 189 NNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQNN 248
N Q P +Q+ Q P T Q Q P Q Q
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVT 167
Query: 249 TPKQKGQNNTPKQTP 263
+ + K+
Sbjct: 168 QAVEAPKVEAEKEKE 182
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 28.5 bits (63), Expect = 5.3
Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 11/175 (6%)
Query: 113 STSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNT 172
S ++ NT Q+P+ K+T A+ P+ TP QT P + G+
Sbjct: 365 SCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSE-GKTAG 423
Query: 173 PRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNN---- 228
P N+ P + + + T + Q + +TP +N + K +N
Sbjct: 424 PVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDA 483
Query: 229 ----TPKQTPGQNKTPKQTPGQNNTPKQKGQNNT-PKQTPGQNDTPEQKGQNNTP 278
P + P Q TP + T + ND P + G P
Sbjct: 484 PLSEVPSENPIQ-ATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPP 537
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 27.8 bits (62), Expect = 5.6
Identities = 13/55 (23%), Positives = 18/55 (32%)
Query: 193 KQTPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTPKQTPGQNKTPKQTPGQN 247
+ PA+ +PK T P TP Q + P +TP N
Sbjct: 135 VKAPAEYYSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGN 189
>gnl|CDD|233055 TIGR00617, rpa1, replication factor-a protein 1 (rpa1). All
proteins in this family for which functions are known
are part of a multiprotein complex made up of homologs
of RPA1, RPA2 and RPA3 that bind ssDNA and function in
the recognition of DNA damage for nucleotide excision
repairThis family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford University)
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 608
Score = 28.2 bits (63), Expect = 6.5
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 5/77 (6%)
Query: 128 PAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPGQNNTPKQKG 187
+ Q K N P +N N P + N P
Sbjct: 119 TYEKYLDSWHEEQVLASKPATNPANPPNAKAPKNEVASYNNAAN-----PERGNAPPAPN 173
Query: 188 QNNTPKQTPAQNNTPKQ 204
+T + P + +P Q
Sbjct: 174 SGSTRRVMPIASLSPYQ 190
>gnl|CDD|177646 PHA03418, PHA03418, hypothetical E4 protein; Provisional.
Length = 230
Score = 27.8 bits (61), Expect = 6.5
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 157 TPGQNNTPKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTPAQNNTPKQ-KGQNNTPKQTP 215
P ++ Q+ + P P TP+ Q N + P + +++
Sbjct: 36 LPAPHHPNPQEDPDKNPSPPPDPPLTPRPPAQPNGHNKPPVTKQPGGEGTEEDHQAPLAA 95
Query: 216 GQNDTPE--QKGQNNTPKQTPGQNKTPKQTPGQNNTPKQKGQNNTPKQTPGQNDTPEQKG 273
+D P ++ + + PG+ + P + P T GQ + P + G
Sbjct: 96 DADDDPRPGKRSKADEHGPAPGRAALAPFKLDLDQDPLHGDPDPPPGATGGQGEEPPEGG 155
Query: 274 QNNTP 278
+ + P
Sbjct: 156 EESQP 160
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 27.8 bits (61), Expect = 7.2
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 9/154 (5%)
Query: 59 VTRRSCKLSGIKLEDISESPIELLGRRKPKQSISSVTKTPAKKSTVNSTATPSQSTSIDS 118
VT +S K I+ + + P R + + + TP + ++
Sbjct: 23 VTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNT 82
Query: 119 AQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQTPG 178
+ TS + + PKQ ++ TP QT ++ TPK K TP
Sbjct: 83 NEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTP- 141
Query: 179 QNNTPKQKGQNNTPKQTPAQNNTPKQKGQNNTPK 212
P Q +++TP Q+ T KQ + TPK
Sbjct: 142 ---QPMQSTKSDTP-----QSPTIKQAQTDMTPK 167
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 27.7 bits (61), Expect = 7.5
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 136 QTPAQNNTPKQTPGQNNTPKQTPGQNNTPKQKGQNNTPRQ-TPGQNNTPKQKGQNNTPKQ 194
PA N P G+ T +P+ +G T P + + + TP
Sbjct: 22 DWPAGNMIPVGAFGKRPTIPHILDH--SPQVEGIRTTQSGIPPPAGTSNRLGLRQPTPIT 79
Query: 195 TPAQNNTPKQKGQNNTPKQTPGQNDTPEQKGQNNTP--KQTPGQNKTPK 241
P ++ P ++ Q N+ Q + P +G K +P +
Sbjct: 80 PPLRDWHP-EEDQKNSTAFHQYQEERPRVRGTYLPAGGKSSPTVDPLLN 127
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 27.4 bits (61), Expect = 9.8
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 98 PAKKSTVNSTATPSQSTSIDSAQNNTSKQTPAQNNTPKQTPAQNNTPKQTPGQNNTPKQT 157
+T S P + + + K K+ N + K++
Sbjct: 11 FFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKS 70
Query: 158 PGQNNT------PKQKGQNNTPRQTPGQNNTPKQKGQNNTPKQTP 196
+ PK +G+ +TP +K + PK P
Sbjct: 71 EKKKKKKKEKKEPKSEGETKLGFKTP----KKSKKTKKKPPKPKP 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.296 0.114 0.312
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,476,392
Number of extensions: 1026029
Number of successful extensions: 2053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 443
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 58 (26.3 bits)