BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13186
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/152 (71%), Positives = 126/152 (82%)
Query: 6 LDPISNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNE 65
L P S +DDEL LPRASINKIIKE++P +RVANESREL++NCC EFIHLISSEAN++CN
Sbjct: 8 LLPPSAEDDELTLPRASINKIIKELVPTVRVANESRELILNCCSEFIHLISSEANEVCNM 67
Query: 66 QQKKTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLR 125
+ KKTINAEHVL+AL++LGF DYK EAE V+ DCK VAA R++QS RLENLGIPEEELLR
Sbjct: 68 RNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENLGIPEEELLR 127
Query: 126 QQQELFAKAREEQAAADLSQWQHIQEITSQQK 157
QQQELFAKAREEQA + QW +Q Q+
Sbjct: 128 QQQELFAKAREEQAREEQQQWMSMQAAAMVQR 159
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/137 (68%), Positives = 118/137 (86%)
Query: 10 SNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKK 69
S +DD+L +PRA+INK+IKE LPN+RVAN++RELV+NCC EFIHLISSEAN+ICN+ +KK
Sbjct: 5 SGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKK 64
Query: 70 TINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQE 129
TI+ EHV+QAL+ LGFG Y SE +EV+++CK VA R+K S+RLENLGIPEEELLRQQQE
Sbjct: 65 TISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQE 124
Query: 130 LFAKAREEQAAADLSQW 146
LFAKAR++QA +W
Sbjct: 125 LFAKARQQQAELAQQEW 141
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/137 (68%), Positives = 118/137 (86%)
Query: 10 SNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKK 69
S +DD+L +PRA+INK+IKE LPN+RVAN++RELV+NCC EFIHLISSEAN+ICN+ +KK
Sbjct: 5 SGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKK 64
Query: 70 TINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQE 129
TI+ EHV+QAL+ LGFG Y SE +EV+++CK VA R+K S+RLENLGIPEEELLRQQQE
Sbjct: 65 TISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQE 124
Query: 130 LFAKAREEQAAADLSQW 146
LFAKAR++QA +W
Sbjct: 125 LFAKARQQQAELAQQEW 141
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/137 (68%), Positives = 118/137 (86%)
Query: 10 SNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKK 69
S +DD+L +PRA+INK+IKE LPN+RVAN++RELV+NCC EFIHLISSEAN+ICN+ +KK
Sbjct: 5 SGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKK 64
Query: 70 TINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQE 129
TI+ EHV+QAL+ LGFG Y SE +EV+++CK VA R+K S+RLENLGIPEEELLRQQQE
Sbjct: 65 TISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQE 124
Query: 130 LFAKAREEQAAADLSQW 146
LFAKAR++QA +W
Sbjct: 125 LFAKARQQQAELAQQEW 141
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/137 (68%), Positives = 118/137 (86%)
Query: 10 SNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKK 69
S +DD+L +PRA+INK+IKE LPN+RVAN++RELV+NCC EFIHLISSEAN+ICN+ +KK
Sbjct: 5 SGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKK 64
Query: 70 TINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQE 129
TI+ EHV+QAL+ LGFG Y SE +EV+++CK VA R+K S+RLENLGIPEEELLRQQQE
Sbjct: 65 TISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQE 124
Query: 130 LFAKAREEQAAADLSQW 146
LFAKAR++QA +W
Sbjct: 125 LFAKARQQQAELAQQEW 141
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
Query: 13 DDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTI 71
+D L LP+A+++K+IKE+LP +++ +NE+R+L++ CC+EFIHLISSEANDIC +QK+TI
Sbjct: 8 EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTI 67
Query: 72 NAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELF 131
AEHV++AL +LGF DY + +V K+ + + K S + ENLG P E+L+R+QQ LF
Sbjct: 68 AAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLGKPTEQLIREQQLLF 127
Query: 132 AKAR 135
AKAR
Sbjct: 128 AKAR 131
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Query: 13 DDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTI 71
DDEL LP+A++ K++ +ILP ++ E+R+L++ CC+EFIHL+SSEAN+IC ++ KKTI
Sbjct: 7 DDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTI 66
Query: 72 NAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELF 131
AEH+++AL+ L F +Y +EA EV + K NR+K+S++ E G+ +ELLRQQ+EL
Sbjct: 67 AAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGVSRDELLRQQEELL 126
Query: 132 AKARE 136
++ARE
Sbjct: 127 SRARE 131
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 90/133 (67%), Gaps = 4/133 (3%)
Query: 6 LDPISNDDDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICN 64
+D + ++ LP+A++ KIIKE+LP ++RVA ++++L++ CC+EFI+L+SSE+ND+CN
Sbjct: 4 MDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCN 63
Query: 65 EQQKKTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLG--IPEEE 122
++ K+TI EHVL+AL LGFG+Y E + K ++S + N G + EEE
Sbjct: 64 KEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKW-NPGAQMTEEE 122
Query: 123 LLRQQQELFAKAR 135
+QQ +FA+AR
Sbjct: 123 AAAEQQRMFAEAR 135
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I++I+K LP N ++A +++E+V C EFI ++SEA+D C +++KTIN +
Sbjct: 34 FLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDD 93
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF DY
Sbjct: 94 LLWAMATLGFEDY 106
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
+LP A++ +I+K ILP N +V+ E++E + C EFI ++ EA+D C+++++KT+N +
Sbjct: 55 LLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDD 114
Query: 76 VLQALDQLGFGDYKSEAEEVMKDCKIV 102
+ A+ LGF DY ++ ++ + +++
Sbjct: 115 ICWAMANLGFDDYAAQLKKYLHRYRVL 141
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I++I+K+ +P N ++A +++E V C EFI I+SEA+D C +++KTIN +
Sbjct: 35 FLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDD 94
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF DY
Sbjct: 95 LLWAMATLGFEDY 107
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I++I+K+ +P N ++A +++E V C EFI I+SEA+D C +++KTIN +
Sbjct: 42 FLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDD 101
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF DY
Sbjct: 102 LLWAMATLGFEDY 114
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis
thaliana GN=NFYB3 PE=2 SV=1
Length = 161
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A++++I+K+ LP N +++ +++E V C EFI I+ EA+D C +++KTIN +
Sbjct: 25 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDD 84
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF DY
Sbjct: 85 LLWAMTTLGFEDY 97
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I++I+K LP N ++A +++E + C EFI ++SEA+D C +++KTIN +
Sbjct: 33 FLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDD 92
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF DY
Sbjct: 93 LLWAMATLGFEDY 105
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis
thaliana GN=NFYB1 PE=1 SV=2
Length = 141
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I++I+K+ LP N ++ ++++ V C EFI I+SEA+D C ++++KT+N +
Sbjct: 25 YLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDD 84
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF DY
Sbjct: 85 LLWAMATLGFEDY 97
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 9 ISNDDDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQ 67
+S + + LP A++++I+K+ LP N +++ +++E + C EFI ++ EA+D C +++
Sbjct: 23 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEK 82
Query: 68 KKTINAEHVLQALDQLGFGDY 88
+KTIN + +L A+ LGF DY
Sbjct: 83 RKTINGDDLLWAMTTLGFEDY 103
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 1 MSDVGLDPISNDDDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEA 59
MS GLD + +LP A++ +I+K LP N +++ E+++ V +C EFI ++ EA
Sbjct: 1 MSADGLDYTN------LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEA 54
Query: 60 NDICNEQQKKTINAEHVLQALDQLGFGDY 88
++ C ++++KTI E VL AL+ LGF +Y
Sbjct: 55 SEQCTQEKRKTITGEDVLLALNTLGFENY 83
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 87/128 (67%), Gaps = 1/128 (0%)
Query: 9 ISNDDDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQ 67
++ D D + LP+A++ K+I EIL ++ ++RE+++N +EFI ++SS A+++ + +
Sbjct: 1 MAGDSDNVSLPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEA 60
Query: 68 KKTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQ 127
KKTI EHV++AL++L + ++ EE++ + K ++ + ++ + G+ EEELLRQQ
Sbjct: 61 KKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDSKFKKSGLSEEELLRQQ 120
Query: 128 QELFAKAR 135
+ELF ++R
Sbjct: 121 EELFRQSR 128
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 18 LPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
LP A+I +I+K+ LPN +VA +++E V +C EFI I+SEA+D C ++++KTIN E +
Sbjct: 53 LPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDI 112
Query: 77 LQALDQLGFGDY 88
+ A+ LGF +Y
Sbjct: 113 IAAMVSLGFENY 124
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
+P A++ +I++ ILP + +++++S+E + C E+I I+ EAN+ C +Q+KTI AE
Sbjct: 62 FMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAED 121
Query: 76 VLQALDQLGFGDY 88
VL A+ +LGF DY
Sbjct: 122 VLWAMSKLGFDDY 134
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A++ +I+K++LP N +++ +++E V C EFI ++ EA+D C +++KTIN +
Sbjct: 40 FLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDD 99
Query: 76 VLQALDQLGFGDY 88
++ A+ LGF DY
Sbjct: 100 IIWAITTLGFEDY 112
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I++I+K+ +P N ++A +++E + C EFI ++SEA+D C ++++KTIN E
Sbjct: 38 FLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGED 97
Query: 76 VLQALDQLGFGDY 88
+L A+ LGF +Y
Sbjct: 98 LLFAMGTLGFEEY 110
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 17 ILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEH 75
LP A+I +I++ +P N ++A +S+E V C EFI I+SEA+D C ++++KTIN +
Sbjct: 26 FLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDD 85
Query: 76 VLQALDQLGFGDY 88
++ ++ LGF DY
Sbjct: 86 LIWSMGTLGFEDY 98
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 ELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
++ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN
Sbjct: 56 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTING 115
Query: 74 EHVLQALDQLGFGDY 88
E +L A+ LGF Y
Sbjct: 116 EDILFAMSTLGFDSY 130
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 ELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
++ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN
Sbjct: 56 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTING 115
Query: 74 EHVLQALDQLGFGDY 88
E +L A+ LGF Y
Sbjct: 116 EDILFAMSTLGFDSY 130
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 ELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
++ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN
Sbjct: 56 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTING 115
Query: 74 EHVLQALDQLGFGDY 88
E +L A+ LGF Y
Sbjct: 116 EDILFAMSTLGFDSY 130
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 ELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
++ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN
Sbjct: 56 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTING 115
Query: 74 EHVLQALDQLGFGDY 88
E +L A+ LGF Y
Sbjct: 116 EDILFAMSTLGFDSY 130
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 ELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
++ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN
Sbjct: 54 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTING 113
Query: 74 EHVLQALDQLGFGDY 88
E +L A+ LGF Y
Sbjct: 114 EDILFAMSTLGFDSY 128
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 7 DPISNDDDELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNE 65
DP D + LP A++ +I+K +P+ ++A +++E V C EFI I+SEA++ C++
Sbjct: 51 DPYREQD--IYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQ 108
Query: 66 QQKKTINAEHVLQALDQLGFGDY 88
+++KTIN E +L A+ LGF Y
Sbjct: 109 EKRKTINGEDILFAMSTLGFDSY 131
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 15 ELILPRASINKIIKEILPNI-RVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
++ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN
Sbjct: 56 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTING 115
Query: 74 EHVLQALDQLGFGDY 88
E +L A+ LGF Y
Sbjct: 116 EDILFAMSTLGFDSY 130
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis
thaliana GN=NFYB4 PE=1 SV=1
Length = 139
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 13 DDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTI 71
D++ +LP A++ +++K+ILP N +++ E+++ V C EFI ++ EA++ C+ + +KT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 72 NAEHVLQALDQLGFGDY 88
N + + AL LG +Y
Sbjct: 63 NGDDIWWALSTLGLDNY 79
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 18 LPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
+P A++ +I+++ LP + +++++++E + C E+I ++ EAN+ C +Q+KTI AE +
Sbjct: 64 MPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDI 123
Query: 77 LQALDQLGFGDY 88
L A+ +LGF +Y
Sbjct: 124 LWAMSKLGFDNY 135
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 18 LPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
LP ++ +++K LP +V+ +++E + C EFI ++SEA D C ++KTIN E +
Sbjct: 27 LPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTINGEDI 86
Query: 77 LQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEEL 123
L +L LGF +Y EV+ KI A ++Q + P+E++
Sbjct: 87 LLSLHALGFENYA----EVL---KIYLAKYRQQQAIKNQMMYPKEDV 126
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 18 LPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
LP ++ +++K LP + +V+ +++E + C E I ++SEA+D C ++KTIN E +
Sbjct: 42 LPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTINGEDI 101
Query: 77 LQALDQLGFGDY 88
L +L LGF +Y
Sbjct: 102 LISLHALGFENY 113
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 18 LPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
LP A++ ++IK++LP ++ ++ L +C +EF+ + EA++ + ++T+ E
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 77 LQALDQLGFGDY 88
L + LGF Y
Sbjct: 94 LGSFGDLGFDRY 105
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2
SV=1
Length = 147
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 14 DELILPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
++L LP A I +IIKE LP+ + ++ E+R + F+ +S AN+ + ++KT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 73 AEHVLQALDQLGFGDYKSEAEEVM 96
A VL A++++ F + + +E +
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEAL 89
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1
SV=1
Length = 147
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 14 DELILPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
++L LP A I +IIKE LP+ + ++ E+R + F+ +S AN+ + ++KT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 73 AEHVLQALDQLGFGDYKSEAEEVM 96
A VL A++++ F + + +E +
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEAL 89
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 18 LPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
LP A +N+IIK LP + A ESR + +IH +++ + D + + TI+ + V
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 77 LQALDQLGFGDYKSEAEEVMKDCK 100
QA++++ F ++K + EE + K
Sbjct: 67 FQAIEEIDFENFKPQLEEYLAALK 90
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 14 DELILPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
++L LP A I +IIKE LP+ + ++ E+R + F+ +S AN+ + ++KT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 73 AEHVLQALDQLGFGDYKSEAEEVM 96
A VL A++++ F + + +E +
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEAL 89
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2
SV=1
Length = 145
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 14 DELILPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
++L LP A I +IIKE LP+ + ++ E+R + F+ +S AN+ + ++KT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 73 AEHVLQALDQLGFGDYKSEAEEVM 96
A VL A++++ F + + +E +
Sbjct: 66 ASDVLSAMEEMEFQRFITPLKEAL 89
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3
PE=2 SV=1
Length = 145
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 14 DELILPRASINKIIKEILPN-IRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
++L LP A I +IIKE LP+ + ++ E+R + F+ +S AN+ + ++KT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 73 AEHVLQALDQLGFGDYKSEAEEVM 96
A VL A++++ F + + +E +
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEAL 89
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 44 VMNCCMEFIHLISSEANDICNEQQKKTINAEHVLQALDQLGFGDY 88
V C EFI I+SEA++ C+++++KTIN E +L A+ LGF Y
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY 45
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 14 DELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
D+L LPR+ I +++K +LP V E+ + ++N F+ ++S + +I +K +
Sbjct: 13 DDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILM 72
Query: 73 AEHVLQALDQLGFGDY 88
+ VL ALD++ + ++
Sbjct: 73 PQDVLNALDEIEYPEF 88
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 14 DELILPRASINKIIKEIL--------PNIRVANESRELVMNCCMEFIHLISSEANDICNE 65
DE++ PRA++ K+ K I+ N+ +A +S + F+ + +A I +
Sbjct: 27 DEILFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKD 86
Query: 66 QQKKTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQ 109
+ +KTINA+ +L AL++ F + E ++ + + A RKK
Sbjct: 87 EGRKTINAQDILSALEKAEFSGFIPEVKQKLSVFESNIALRKKH 130
>sp|P0DJH6|CENPW_CHICK Centromere protein W OS=Gallus gallus GN=CENPW PE=1 SV=1
Length = 76
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
+PR ++ KIIK+ P++R+A + LV + F+H ++ EA E + K I EH +
Sbjct: 5 VPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTI 64
Query: 78 QA 79
A
Sbjct: 65 AA 66
>sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4
PE=3 SV=1
Length = 204
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 14 DELILPRASINKIIKEIL----------PNIRVANESRELVMNCCMEFIHLISSEANDIC 63
D+L+ PR+ I + K+ + P + ++ ++ + F++ + A I
Sbjct: 68 DDLLFPRSIITSLAKDAVHQAVQTAEQDPRVMLSKDASLALQRSSTVFVNHLLMHARQIA 127
Query: 64 NEQQKKTINAEHVLQALDQLGFGDYKSEAEE 94
+K+ + E VL+ALDQ+G ++S E
Sbjct: 128 QSNDRKSCSGEDVLKALDQIGLAGFESVVRE 158
>sp|Q5EE01|CENPW_HUMAN Centromere protein W OS=Homo sapiens GN=CENPW PE=1 SV=1
Length = 88
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 19 PRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVLQ 78
PR + ++ K P +R+ LV C+ F+H ++ E+ + + IN EHVL
Sbjct: 18 PRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRTNACASKCRVINKEHVLA 77
Query: 79 A 79
A
Sbjct: 78 A 78
>sp|O95025|SEM3D_HUMAN Semaphorin-3D OS=Homo sapiens GN=SEMA3D PE=2 SV=2
Length = 777
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Query: 51 FIH-LISSEANDICNEQQKKTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQ 109
FIH ++ N I NEQ + T AEH E +KD ++A +R +
Sbjct: 672 FIHTIVKLTLNVIENEQMENTQRAEH----------------EEGKVKD--LLAESRLRY 713
Query: 110 SNRLENLGIPEEELLRQQQELFAKAREEQAAADLSQWQHIQEITSQQKQQEESDLE 165
+ ++ L P L + ++++ + + Q +W+H+QE+ ++ ++ DL+
Sbjct: 714 KDYIQILSSPNFSLDQYCEQMWHREKRRQRNKGGPKWKHMQEMKKKRNRRHHRDLD 769
>sp|Q8BH34|SEM3D_MOUSE Semaphorin-3D OS=Mus musculus GN=Sema3d PE=1 SV=1
Length = 777
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 51 FIH-LISSEANDICNEQQKKTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQ 109
FIH ++ N I NEQ + T AE+ E +KD ++A +R +
Sbjct: 672 FIHTIVKLTLNVIENEQMENTQRAEY----------------QEGQVKD--LLAESRLRY 713
Query: 110 SNRLENLGIPEEELLRQQQELFAKAREEQAAADLSQWQHIQEITSQQKQQEESDLESDEE 169
+ ++ L P L + ++++ K + Q +W+H+QE+ ++ ++ DL+ +
Sbjct: 714 KDYIQILSSPNFSLDQYCEQMWYKEKRRQRNKGSPKWKHMQEMKKKRNRRHHRDLDELQR 773
Query: 170 S 170
S
Sbjct: 774 S 774
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 14 DELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTIN 72
D+L+ P+++I + KE LP + ++ ++ + F+ ++S N +K I
Sbjct: 33 DDLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKIT 92
Query: 73 AEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKK 108
+ V AL + + + + + + A RKK
Sbjct: 93 PQDVFVALKDVDLAQFVPSVTQSVNEFEQEVAQRKK 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,527,995
Number of Sequences: 539616
Number of extensions: 2164551
Number of successful extensions: 16505
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 13230
Number of HSP's gapped (non-prelim): 2765
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)