RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13186
(170 letters)
>gnl|CDD|227479 COG5150, COG5150, Class 2 transcription repressor NC2, beta subunit
(Dr1) [Transcription].
Length = 148
Score = 110 bits (277), Expect = 1e-31
Identities = 52/127 (40%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Query: 12 DDDELILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKT 70
+DDE LP+A++ K++ ILP ++ E+RE+ +N C+EFI+++SSEAN+ C E+ KKT
Sbjct: 6 NDDENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKT 65
Query: 71 INAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQEL 130
I EHV++AL+ L F +Y E ++ K ++ + ++ ++ G+ EELLRQQ+EL
Sbjct: 66 IAYEHVIKALENLEFEEYIESCMEEHENYKSYQKQKESKISKFKDSGLSMEELLRQQEEL 125
Query: 131 FAKAREE 137
F AR
Sbjct: 126 FQNARLR 132
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor
(CBF/NF-Y) and archaeal histone. This family includes
archaebacterial histones and histone like transcription
factors from eukaryotes.
Length = 65
Score = 76.1 bits (188), Expect = 4e-19
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
LP A + +I+K R++ +++EL+ C EFI I+SEA +IC ++++KTINAEH+
Sbjct: 3 LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICKKEKRKTINAEHIK 62
Query: 78 QAL 80
A+
Sbjct: 63 LAV 65
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and
dynamics].
Length = 91
Score = 46.2 bits (110), Expect = 2e-07
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 1 MSDVGLDPISN--DDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSE 58
VGL I +L+LP+A + +I+++ RV++ + E + E++ I+ +
Sbjct: 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-RVSSSAIEELQEALEEYLEEIAED 59
Query: 59 ANDICNEQQKKTINAEHVLQALDQLGFGDYK 89
A ++ ++KT+ AE + AL +LG Y
Sbjct: 60 AVELAEHAKRKTVKAEDIKLALKRLGRRIYG 90
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 32.6 bits (75), Expect = 0.086
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 107 KKQSNRLENLGIPEEELLRQQQELFAKARE------EQAAADLSQWQHIQEITSQQKQQE 160
+ N L L E L+QQ EL A+ + E +L + + +++Q+
Sbjct: 138 EDPENLLHAL-QQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQEL 196
Query: 161 ESDLES 166
E+ LE
Sbjct: 197 EAQLEQ 202
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 31.0 bits (70), Expect = 0.26
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 12/51 (23%)
Query: 120 EEELLRQQQELFAKAREEQAAADLSQWQHIQEITSQQKQQEESDLESDEES 170
E+EL RQ+ E+ A+A+EE+AAA +EIT +EE+ L ES
Sbjct: 504 EKELQRQETEVDAQAQEEEAAA-------AKEIT-----EEENVLAKAVES 542
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.4 bits (67), Expect = 1.1
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 52 IHLISSEANDICNEQQK--KTINAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQ 109
I EA I E +K + I E +L+A ++ ++E E+ +++ R+ +
Sbjct: 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEE--IHKLRNEFEKELRE-------RRNE 83
Query: 110 SNRLENLGIPEEELLRQQQELFAKAREEQAAADLSQWQHIQEITSQQKQQEESDLESDEE 169
+LE + +EE L ++ EL K EE + Q QE+ ++++ EE E +E
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|223994 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational
modification, protein turnover, chaperones].
Length = 647
Score = 29.2 bits (66), Expect = 1.2
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 8 PISNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQ 67
++ D + L + ++ ++I+E R A + + + +L+ EA DI +
Sbjct: 329 ELARDGNIPHLDKDAVEELIREA---ARRA-GDQNKLTLRLRDLGNLVR-EAGDIAVSEG 383
Query: 68 KKTINAEHVLQALDQ 82
+K I AE V +AL +
Sbjct: 384 RKLITAEDVEEALQK 398
>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional.
Length = 117
Score = 27.8 bits (61), Expect = 1.3
Identities = 11/58 (18%), Positives = 35/58 (60%)
Query: 23 INKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVLQAL 80
I K++K++ P+ ++ +S ++ + ++ I++EA+ +C ++ T+++ + A+
Sbjct: 34 IFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAI 91
>gnl|CDD|182661 PRK10702, PRK10702, endonuclease III; Provisional.
Length = 211
Score = 28.4 bits (63), Expect = 1.7
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 29 EILPNIRVANE--SRELVMNCCMEFI--HLISSEANDI-CNEQQKKTINAEHVLQALDQL 83
EIL +R N + EL + E + L+S++A D+ N+ K + A+ +L
Sbjct: 8 EILTRLRDNNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLEL 67
Query: 84 G----------FGDYKSEAEEVMKDCKIV 102
G G Y S+AE V+K C+I+
Sbjct: 68 GVEGVKTYIKTIGLYNSKAENVIKTCRIL 96
>gnl|CDD|224833 COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope
biogenesis, outer membrane].
Length = 253
Score = 28.4 bits (64), Expect = 1.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 49 MEFIHLISSEANDICNEQQKK----TINAEHVLQALDQLGFGDYKSEAEEVMKDCK-IVA 103
E + LI EQ K T+NAE VL A F + ++A+ ++ D +V
Sbjct: 23 DEAVALILGRI-----EQGKPTTVVTLNAEKVLLARKDPEFREILNQADLILPDGIGVVR 77
Query: 104 ANRKK 108
A R+
Sbjct: 78 AARRL 82
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 27.9 bits (62), Expect = 2.5
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 115 NLGIPEEELL------RQQQELFAKAREEQAAADLSQWQHIQEITSQQKQQEESD---LE 165
++GI E L+ R+ Q+ FA A +++A A + + EIT Q + +
Sbjct: 156 HMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFA 215
Query: 166 SDEE 169
+DE+
Sbjct: 216 TDEQ 219
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 28.3 bits (63), Expect = 2.7
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 82 QLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELFAKAREEQAAA 141
+ GF + + K ++N K QSN EN G E LR EL K+
Sbjct: 39 RRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDEN-GQLENTSLRTVMELPQKSTSSDDDH 97
Query: 142 DLSQWQHIQEITSQQKQQEESDLESDEES 170
+ + Q + I + +Q+ + + ++ S
Sbjct: 98 NRASMQRDEAIAAIDNEQQTNSKDGEQLS 126
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 27.1 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 136 EEQAAADLSQWQHIQEITSQQKQQEESDLESDEES 170
EE+ + + Q E QQ QQ E E+ EES
Sbjct: 98 EEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEES 132
>gnl|CDD|190261 pfam02257, RFX_DNA_binding, RFX DNA-binding domain. RFX is a
regulatory factor which binds to the X box of MHC class
II genes and is essential for their expression. The
DNA-binding domain of RFX is the central domain of the
protein and binds ssDNA as either a monomer or
homodimer.
Length = 73
Score = 25.6 bits (57), Expect = 4.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 5 GLDPISNDDDELILPRASINKIIKEILPNIR 35
GL P+S AS K+I+ + P ++
Sbjct: 41 GLKPLSA---------ASFGKLIRSVFPGLK 62
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 27.3 bits (61), Expect = 4.5
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 89 KSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELFAKAREEQAAADLSQWQH 148
+++AE + +++ +K++ +E +E ++Q E RE +
Sbjct: 210 RAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAERE--------KLLA 261
Query: 149 IQEITSQQKQQEESDL 164
QE + K QE+ +L
Sbjct: 262 EQERMLEHKLQEQEEL 277
>gnl|CDD|182291 PRK10187, PRK10187, trehalose-6-phosphate phosphatase; Provisional.
Length = 266
Score = 27.0 bits (60), Expect = 4.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 146 WQHIQEITSQQKQQEESDLESDEES 170
W ++ IT+ Q+Q+ E++ D ES
Sbjct: 237 WSWLEMITTAQQQKRENNRRDDYES 261
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 27.2 bits (60), Expect = 5.4
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 89 KSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELFAKAREEQAAADLSQWQH 148
K E + K+ ++ + KQ+ E+E L+Q ++ KA+E+Q A+ ++ Q
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAA--------EQERLKQLEKERLKAQEQQKQAEEAEKQA 127
Query: 149 IQEITSQQKQQEESDLE 165
E Q++Q ++ E
Sbjct: 128 QLEQKQQEEQARKAAAE 144
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 27.0 bits (59), Expect = 5.9
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 82 QLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENL-GIPEEELLRQQQELFAKAREEQAA 140
+LGFG Y + E+ K C + + NR+ + + EEE R +++ KA ++
Sbjct: 112 ELGFGQYTAYYREMRKMCMVNLFS----PNRVASFRPVREEECQRMMDKIY-KAADQSGT 166
Query: 141 ADLSQ 145
DLS+
Sbjct: 167 VDLSE 171
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase.
Length = 559
Score = 27.0 bits (60), Expect = 6.1
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 74 EHVLQALDQLGFGDYKSEAEEVMK----DCKIVAANRKKQSNRLENLGIPEEELLRQQQE 129
+++L L + DY++ + +C + A K++ RL G+ E
Sbjct: 310 QYLLLGLTEELRADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDG 369
Query: 130 LFAKAREEQAAADLSQWQHI 149
L + A+D HI
Sbjct: 370 LCELVSKRVGASDPVATYHI 389
>gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA
replication, recombination, and repair].
Length = 654
Score = 26.7 bits (59), Expect = 7.5
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 67 QKKTI--NAEHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELL 124
KK I LQ +QL D +++K A K +SN L + L
Sbjct: 63 GKKVIISTRTKALQ--EQLLEEDLP--IHKLLKKLGGKFALLKGRSNYLCLSRLERLAQL 118
Query: 125 RQQQELFAKAREEQAAADLSQWQ 147
+ + ++ +A ADL W
Sbjct: 119 GGDDDDYLQSLALKALADLLVWL 141
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 26.8 bits (60), Expect = 7.6
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 53 HLISSEAN---DICNEQQKKTINAEHVLQALDQLGFGDYKSEAEEVMKDC-KIVAANRKK 108
++ +AN DI E+ K + A+ + L + EA ++ + AN K
Sbjct: 413 KVLEEKANSEIDIDFEEAKAELEAQF--KRL--------REEAAKIDPSLEGALEANEAK 462
Query: 109 QSNRLENLGIPEEELLRQQ 127
+LE L E+ LL+ Q
Sbjct: 463 ILKQLEFL---EKRLLKAQ 478
>gnl|CDD|224707 COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer
membrane].
Length = 230
Score = 26.4 bits (59), Expect = 7.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 1 MSDVGLDPISNDDDELILPRASINKIIKEILPNIRVANESRELVMN 46
+ + G++ + DDDE +A +N+II E L V + SREL +
Sbjct: 138 LEEKGIEVVVPDDDE----QAEVNRIIYEELCQGIVKDASRELYLA 179
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 26.5 bits (58), Expect = 9.4
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 10/137 (7%)
Query: 29 EILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVLQALDQLGFGDY 88
+I P +R +E +E QK E V Q L
Sbjct: 78 DIRPQLRALRTELGTAQGEKRA----AETEREAARSELQKARQEREAVRQELAAA----- 128
Query: 89 KSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELFAKAREEQAAADLSQWQH 148
+ + ++ + + RL+ L +L Q Q L A ++ QA+A + Q
Sbjct: 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQ- 187
Query: 149 IQEITSQQKQQEESDLE 165
+ ++ + Q E+
Sbjct: 188 VLDLKLRSAQIEQEAQN 204
>gnl|CDD|212126 cd10815, GH38N_AMII_EcMngB_like, N-terminal catalytic domain of
Escherichia coli alpha-mannosidase MngB and its
bacterial homologs; glycoside hydrolase family 38
(GH38). The bacterial subfamily is represented by
Escherichia coli alpha-mannosidase MngB, which is
encoded by the mngB gene (previously called ybgG). MngB
exhibits alpha-mannosidase activity that converts
2-O-(6-phospho-alpha-mannosyl)-D-glycerate to
mannose-6-phosphate and glycerate in the pathway which
enables use of mannosyl-D-glycerate as a sole carbon
source. A divalent metal ion is required for its
activity.
Length = 270
Score = 26.3 bits (59), Expect = 9.5
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 6 LDPI------SNDDDELILP----RASINKIIKEILPNIRVANESRELVMNCCMEFIHLI 55
LDPI D ++LP + I K + E++ + + E V++ EF +
Sbjct: 193 LDPILEKLERRATTDNILLPNGGDQMPIRKNLPEVIEELNEISPDYEYVISSYEEFFKAL 252
Query: 56 SSEAN 60
+
Sbjct: 253 EKNKD 257
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 26.4 bits (59), Expect = 9.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 74 EHVLQALDQLGFGDYKSEAEEVMKDCKIVAA 104
+ L A+ LGF + EE KI+AA
Sbjct: 243 KETLNAMRVLGFSE-----EEQESIFKILAA 268
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.342
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,469,729
Number of extensions: 774427
Number of successful extensions: 1064
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 129
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.8 bits)