RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13186
(170 letters)
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 121 bits (306), Expect = 8e-37
Identities = 92/135 (68%), Positives = 115/135 (85%)
Query: 14 DELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINA 73
D+L +PRA+INK+IKE LPN+RVAN++RELV+NCC EFIHLISSEAN+ICN+ +KKTI+
Sbjct: 1 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 60
Query: 74 EHVLQALDQLGFGDYKSEAEEVMKDCKIVAANRKKQSNRLENLGIPEEELLRQQQELFAK 133
EHV+QAL+ LGFG Y SE +EV+++CK VA R+K S+RLENLGIPEEELLRQQQELFAK
Sbjct: 61 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAK 120
Query: 134 AREEQAAADLSQWQH 148
AR++QA +W
Sbjct: 121 ARQQQAELAQQEWLQ 135
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 79.9 bits (197), Expect = 5e-21
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 16 LILPRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAE 74
+ LP A++ +I+K +P ++A +++E V C EFI I+SEA++ C+++++KTIN E
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 75 HVLQALDQLGFGDYKSEAEEVMKDCK 100
+L A+ LGF Y + ++ +
Sbjct: 61 DILFAMSTLGFDSYVEPLKLYLQKFR 86
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 79.1 bits (195), Expect = 1e-20
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 19 PRASINKIIKEILP-NIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
P A I ++IKE LP + V+ E+R + F ++S + + ++Q KTI A+ +L
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 78 QALDQLGFGDYKSEAEEVMKDCKIVAANR 106
Q L +L F + + ++ + V +
Sbjct: 61 QTLTELDFESFVPSLTQDLEVYRKVVKEK 89
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 78.3 bits (193), Expect = 1e-19
Identities = 15/78 (19%), Positives = 38/78 (48%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
LP+A+I +I ++ + R++ ++++ + + +++ A + + KKT+ EH+
Sbjct: 2 LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 78 QALDQLGFGDYKSEAEEV 95
D L + E+
Sbjct: 62 ALADVLMVEGVEDYDGEL 79
Score = 56.3 bits (136), Expect = 3e-11
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 3 DVGLDPISNDDDELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDI 62
DV + D D + RA++ +I+K R ++++ +L + +A +
Sbjct: 65 DVLMVEGVEDYDGELFGRATVRRILKRAGIE-RASSDAVDLYNKLICRATEELGEKAAEY 123
Query: 63 CNEQQKKTINAEHVLQALDQL 83
+E +KT+ E V +A+
Sbjct: 124 ADEDGRKTVQGEDVEKAITYS 144
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 63.2 bits (154), Expect = 9e-15
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
P A I KI++ +VA ++ F+ + +A + + KT+ H+
Sbjct: 3 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 62
Query: 78 QALD 81
Q ++
Sbjct: 63 QCIE 66
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 62.8 bits (153), Expect = 1e-14
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
LP A I +IIK RV++++R + E I+SEA + +KTI AE +
Sbjct: 4 LPIAPIGRIIKNAGA-ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 62
Query: 78 QALDQL 83
A
Sbjct: 63 LARKMF 68
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 60.9 bits (148), Expect = 6e-14
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
LP A ++++I++ RV+ ++ +++ E+ I+ +A + +KT+ E +
Sbjct: 3 LPIAPVDRLIRKAGA-ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 61
Query: 78 QAL 80
A+
Sbjct: 62 LAI 64
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 60.6 bits (147), Expect = 1e-13
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 18 LPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVL 77
LP A I KI+K ++ E+ L FI ++ A + +++T+ +
Sbjct: 1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60
Query: 78 QAL---DQLGF 85
A+ DQ F
Sbjct: 61 MAITKFDQFDF 71
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 27.7 bits (62), Expect = 0.20
Identities = 11/66 (16%), Positives = 34/66 (51%)
Query: 17 ILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
+L + + +++E+ PN ++ + E+++ +FI + + A + ++ T+ + V
Sbjct: 3 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDV 62
Query: 77 LQALDQ 82
L++
Sbjct: 63 QLHLER 68
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 92
Score = 27.4 bits (61), Expect = 0.32
Identities = 8/54 (14%), Positives = 31/54 (57%)
Query: 23 INKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHV 76
+ K++K++ P+ +++++ ++ + + I+ EA+ + + ++ TI + +
Sbjct: 9 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 62
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 28.2 bits (63), Expect = 0.33
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 15 ELILPRASINKIIKEILPNIRVANESRELVMNCCMEFIHLISSEANDICNEQQKKTINAE 74
L LP I+ ++KE+L ++ ++ ++ I A + + I +
Sbjct: 97 PLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQ 155
Query: 75 HVLQAL 80
+ A+
Sbjct: 156 DIKVAM 161
>d1hgxa_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Tritrichomonas foetus [TaxId: 5724]}
Length = 173
Score = 27.7 bits (61), Expect = 0.59
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 11 NDDDELILPRASINKIIKEILPNIRVANESRELVMNCCM 49
+D + ++ + I K I+E+ + E + VM C +
Sbjct: 2 DDLERVLYNQDDIQKRIRELAAELTEFYEDKNPVMICVL 40
>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 136
Score = 27.0 bits (60), Expect = 0.81
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 109 QSNRLENLGIPEEELLRQQQELFAKAR---------EEQAAA 141
QS+R NL + EE+L+ + + AA
Sbjct: 2 QSSRYVNLALKEEDLIAGGEHVLCAYIMKPKAGYGYVATAAH 43
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 26.5 bits (58), Expect = 1.5
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 11 NDDDELILPRASINKIIKEILPNIRVANESRELVMNCCM 49
D +E+++ + +KE+ I E ++LV+ +
Sbjct: 4 EDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVL 42
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 25.1 bits (55), Expect = 1.6
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 35 RVANESRELVMNCCMEFIHLISSEANDICNEQQK-KTINAEHVLQALDQ 82
+ NE L+ C F+ ++ A Q+ + + EH+ Q +++
Sbjct: 9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 57
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 361
Score = 26.4 bits (58), Expect = 2.2
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 106 RKKQSNRLENLGIPEEELLRQQ---QELFAKAREEQAAADLSQ--WQHIQEITSQQKQQE 160
R+ NR+ NL +P E + + + + EQ + + I + + E
Sbjct: 151 RENGINRIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPE 210
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 26.2 bits (56), Expect = 2.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 74 EHVLQALDQLGFGDYKSEAEEVMKDCK 100
+ VL A+ ++ +E M + K
Sbjct: 30 KRVLTAMTNTVLSNFHAELFRTMDEVK 56
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.9 bits (55), Expect = 3.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 58 EANDICNEQQKKTINAEHVLQALDQLGFG 86
+ + +K I E V ++ ++ FG
Sbjct: 248 RSAYAAQQNGRKHIAPEDVRKSSKEVLFG 276
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 25.0 bits (54), Expect = 5.9
Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 94 EVMKDCKIVAANRKKQSNRLEN---LGIPEEELLRQQQELFAKAREEQAAADLSQWQHIQ 150
+M + K+ + + +G EE+ + + R++ + + H+
Sbjct: 307 SMMLMTGMPQLTSKEDIEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLV 366
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042
{Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 24.4 bits (53), Expect = 6.7
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 38 NESRELVMNCCMEFIHLISSEANDICNEQQKKTINAEHVLQALDQLGFGD 87
+ L++ C + + + E A++ + L QL G
Sbjct: 91 RKILGLILTCKLPGQNNFPLLVDHTSRE-------ADYFRKRLIQLNEGK 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.342
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,427
Number of extensions: 25789
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 34
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)