BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13191
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HYN|P Chain P, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
 pdb|1HYN|Q Chain Q, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
 pdb|1HYN|R Chain R, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
 pdb|1HYN|S Chain S, Crystal Structure Of The Cytoplasmic Domain Of Human
           Erythrocyte Band-3 Protein
          Length = 379

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 22  DVDDASHHA-HPLFSEMEELVRN--GEEMEWKETARWIKFEEDVEEGGNRWSKPHVATXX 78
           D    SH   H ++ E++ELV +   +E+ W E ARW++ EE++ E G  W +PH++   
Sbjct: 45  DYHTTSHPGTHKVYVELQELVMDEKNQELRWMEAARWVQLEENLGENGA-WGRPHLSHLT 103

Query: 79  XXXXXXXXXXXXNGCVMLDLEANSLE----QIVDLFI 111
                        G V+LDL+  SL     Q++D FI
Sbjct: 104 FWSLLELRRVFTKGTVLLDLQETSLAGVANQLLDRFI 140


>pdb|3CDX|A Chain A, Crystal Structure Of
           SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
           Rhodobacter Sphaeroides
 pdb|3CDX|B Chain B, Crystal Structure Of
           SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
           Rhodobacter Sphaeroides
 pdb|3CDX|C Chain C, Crystal Structure Of
           SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
           Rhodobacter Sphaeroides
 pdb|3CDX|D Chain D, Crystal Structure Of
           SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
           Rhodobacter Sphaeroides
 pdb|3CDX|E Chain E, Crystal Structure Of
           SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
           Rhodobacter Sphaeroides
 pdb|3CDX|F Chain F, Crystal Structure Of
           SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
           Rhodobacter Sphaeroides
          Length = 354

 Score = 27.7 bits (60), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 44  GEEMEWKETARWIKFEEDVE 63
           GEE+   ETA WI F EDV+
Sbjct: 285 GEEVRTGETAGWIHFVEDVD 304


>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor Bw1540u88ud
 pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor Bw1540u88ud
 pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
 pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
 pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
 pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
          Length = 592

 Score = 26.9 bits (58), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 13  QRVQFILGEDVDDASHHAHPLFSEMEELVRNGEEMEWKETARWIKFEED 61
           Q V   +GED D     A  LF E+ EL+   E+ EW E    +    D
Sbjct: 493 QYVTGTIGEDEDLIKWKA--LFEEVPELLTEAEKKEWVEKLTEVSISSD 539


>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
           Pyrococcus
 pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
           Pyrococcus
          Length = 645

 Score = 25.8 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 23  VDDASHHA---HPLFSEMEELVRNGEEMEWKETARWIKF 58
           +D   HH    HP F   +++VR GE   +K   R IKF
Sbjct: 304 LDGVFHHTSFFHPYF---QDVVRKGENSSFKNFYRIIKF 339


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,189,442
Number of Sequences: 62578
Number of extensions: 144819
Number of successful extensions: 220
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 5
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)