Query psy13191
Match_columns 139
No_of_seqs 109 out of 173
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:29:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00834 ae anion exchange pr 100.0 2.4E-41 5.3E-46 316.6 6.9 93 34-126 1-94 (900)
2 KOG1172|consensus 100.0 9E-34 1.9E-38 264.1 5.7 96 31-128 1-96 (876)
3 PF07565 Band_3_cyto: Band 3 c 99.9 2.7E-28 5.9E-33 202.0 5.1 66 61-126 1-66 (257)
4 PF02268 TFIIA_gamma_N: Transc 80.4 1.5 3.3E-05 28.8 2.1 39 100-138 8-46 (49)
5 KOG3463|consensus 77.4 1.8 3.9E-05 32.8 2.1 38 100-137 9-46 (109)
6 PF09012 FeoC: FeoC like trans 62.9 9.4 0.0002 25.2 2.9 44 81-124 1-48 (69)
7 PRK15431 ferrous iron transpor 58.3 14 0.0003 26.4 3.2 40 80-123 2-49 (78)
8 cd00211 PTS_IIA_fru PTS_IIA, P 33.3 31 0.00067 24.2 1.8 31 91-121 3-33 (136)
9 PF08258 WWamide: WWamide pept 31.8 8.3 0.00018 16.4 -0.8 7 49-55 1-7 (7)
10 COG1762 PtsN Phosphotransferas 30.8 56 0.0012 24.2 2.9 35 88-122 5-39 (152)
11 PF00359 PTS_EIIA_2: Phosphoen 29.7 61 0.0013 23.1 2.8 35 89-123 3-37 (144)
12 PHA02627 hypothetical protein; 23.2 75 0.0016 22.3 2.2 18 101-118 55-72 (73)
13 PRK10372 PTS system L-ascorbat 22.7 1.1E+02 0.0024 22.7 3.2 38 85-122 3-41 (154)
14 PF10363 DUF2435: Protein of u 21.5 1.5E+02 0.0033 21.0 3.6 33 77-113 19-51 (92)
15 COG3937 Uncharacterized conser 21.4 92 0.002 23.7 2.5 38 84-125 7-44 (108)
16 PRK09854 cmtB putative PTS sys 21.2 1.1E+02 0.0025 22.2 3.0 35 87-121 5-39 (147)
17 PF14198 TnpV: Transposon-enco 20.7 35 0.00075 25.3 0.1 72 66-138 23-97 (111)
18 PF06076 Orthopox_F14: Orthopo 20.7 89 0.0019 22.0 2.2 36 82-118 37-72 (73)
19 TIGR03824 FlgM_jcvi flagellar 20.1 1.2E+02 0.0025 21.4 2.7 28 80-112 66-93 (95)
20 PF10052 DUF2288: Protein of u 20.0 2.4E+02 0.0052 20.6 4.4 47 84-130 18-72 (93)
No 1
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=100.00 E-value=2.4e-41 Score=316.62 Aligned_cols=93 Identities=52% Similarity=0.922 Sum_probs=90.6
Q ss_pred hhhhHHhh-ccCcchhHHHHhhhhhhhhhcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccHHHHHHHHHH
Q psy13191 34 FSEMEELV-RNGEEMEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIE 112 (139)
Q Consensus 34 FvEl~EL~-~~~~~~eWkEtARWIkfEE~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd 112 (139)
||||+||+ .+|++++|||||||||||||||++++|||||||||||||||||||+||.+|+||||++++||++||++|+|
T Consensus 1 f~el~el~~~~~~e~~W~etarWikfEe~ve~~~~rw~kphva~ls~~sl~elr~~~~~g~vlld~~~~~l~~i~~~v~d 80 (900)
T TIGR00834 1 FVELNELMLDRNQEPEWRETARWIKFEEDVEEGGGRWGKPHVATLSFHSLLELRRCFAKGAILLDLAATSLPGVANMVVD 80 (900)
T ss_pred CccHHHhhcCCCchhhhHHHhhHhhhhhccccccCccCCCccccccHHHHHHHHHHHhcCeEEeccccccHHHHHHHHHH
Confidence 89999999 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccc
Q psy13191 113 KLRTTESIPDHESS 126 (139)
Q Consensus 113 ~~i~~~~i~~~~~~ 126 (139)
+|+++|||++++|-
T Consensus 81 ~~~~~~~l~~~~r~ 94 (900)
T TIGR00834 81 HLIYSGQIRPEDRD 94 (900)
T ss_pred hhhhhcCCCHHHHH
Confidence 99999999999884
No 2
>KOG1172|consensus
Probab=100.00 E-value=9e-34 Score=264.12 Aligned_cols=96 Identities=61% Similarity=1.007 Sum_probs=91.9
Q ss_pred CchhhhhHHhhccCcchhHHHHhhhhhhhhhcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccHHHHHHHH
Q psy13191 31 HPLFSEMEELVRNGEEMEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLF 110 (139)
Q Consensus 31 h~lFvEl~EL~~~~~~~eWkEtARWIkfEE~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~V 110 (139)
|++|+||+| +.+ ++.+|||||||||||||||++++||||||||+||||||++||+|+.+|+++||++++||++||++|
T Consensus 1 ~~~f~e~~e-~~~-~~~~wketaRw~kfEEdve~~~~rw~kphva~ls~~sl~~lr~~l~~g~vlld~~~~~l~~~~~~v 78 (876)
T KOG1172|consen 1 HELFTELDE-LQD-DEPEWKETARWIKFEEDVEEGGERWSKPHVATLSLHSLFELRSCLANGTVLLDLDATSLPEIADQV 78 (876)
T ss_pred CCcchhhhc-ccc-CCccHHHhhhhhhhHhhhhhccccccCCcccccchHhHHHHHHHHhcCceeccccccccHHHHHHH
Confidence 789999999 755 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccchh
Q psy13191 111 IEKLRTTESIPDHESSMG 128 (139)
Q Consensus 111 vd~~i~~~~i~~~~~~~~ 128 (139)
+++|+.+|++++++|.=.
T Consensus 79 ~~~~v~~~~~~~~~r~~~ 96 (876)
T KOG1172|consen 79 VEKMVESGQLKPEDRENV 96 (876)
T ss_pred hhhcccCCCCChhhHHHH
Confidence 999999999999988643
No 3
>PF07565 Band_3_cyto: Band 3 cytoplasmic domain; InterPro: IPR013769 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains.; GO: 0008509 anion transmembrane transporter activity, 0006820 anion transport, 0016021 integral to membrane; PDB: 1HYN_Q.
Probab=99.94 E-value=2.7e-28 Score=201.96 Aligned_cols=66 Identities=56% Similarity=0.908 Sum_probs=48.7
Q ss_pred hcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCccccc
Q psy13191 61 DVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPDHESS 126 (139)
Q Consensus 61 ~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~~~~~ 126 (139)
|||++++|||||||||||||||||||+||.+|+|||||+++||++||++|||+|+++++|+++++.
T Consensus 1 dVEeg~~RWsKPHVatLSfhSL~ELR~~l~~G~vLLDlea~tl~~I~~~vvd~~v~~~~l~~~~r~ 66 (257)
T PF07565_consen 1 DVEEGGERWSKPHVATLSFHSLFELRSCLENGTVLLDLEAKTLPEIADKVVDQMVSEGQLRPEDRD 66 (257)
T ss_dssp ----TTS-B---B---BEHHHHHHHHHHHHT-EEEEEE---SHHHHHHHHHHHHHHTTSS-GGGHH
T ss_pred CCcccCCccCCCcccccCHHHHHHHHHHHHhCCeeecccccCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999998864
No 4
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=80.42 E-value=1.5 Score=28.79 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccccchhhhHhhhhhcc
Q psy13191 100 ANSLEQIVDLFIEKLRTTESIPDHESSMGIWSMKKSMNN 138 (139)
Q Consensus 100 a~sL~~Iad~Vvd~~i~~~~i~~~~~~~~~~~~~~~~~~ 138 (139)
.+|+..-....+|+||.+|.|.|+.-.--.-.+-|+||+
T Consensus 8 ~stlG~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 8 RSTLGIALTDTLDELIQEGKITPQLAMKVLEQFDKSINE 46 (49)
T ss_dssp CSHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 466777778899999999999998754333344566553
No 5
>KOG3463|consensus
Probab=77.43 E-value=1.8 Score=32.82 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccccchhhhHhhhhhc
Q psy13191 100 ANSLEQIVDLFIEKLRTTESIPDHESSMGIWSMKKSMN 137 (139)
Q Consensus 100 a~sL~~Iad~Vvd~~i~~~~i~~~~~~~~~~~~~~~~~ 137 (139)
.++|....+..+|.||+.|.|.|....--....-||||
T Consensus 9 ~ttlG~~L~~tLDe~v~~g~itp~la~~VL~~FDKSi~ 46 (109)
T KOG3463|consen 9 RTTLGNALQKTLDELVSDGVITPSLAKKVLEQFDKSIN 46 (109)
T ss_pred HhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999987655556666665
No 6
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=62.93 E-value=9.4 Score=25.21 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHHHHHHHHHh-cccccccccc---cHHHHHHHHHHHHHhcCCCCccc
Q psy13191 81 SLFELRSLLLN-GCVMLDLEAN---SLEQIVDLFIEKLRTTESIPDHE 124 (139)
Q Consensus 81 SL~eLR~~l~~-G~vLLDlea~---sL~~Iad~Vvd~~i~~~~i~~~~ 124 (139)
+|.+||..|.. |.+=++-=|. .=++.++.+++.|+.+|.|+...
T Consensus 1 ~L~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 1 MLQEIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp -CHHHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred CHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 47788888855 4442111111 11234456899999999997544
No 7
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=58.31 E-value=14 Score=26.40 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHh-cccccccccccH-------HHHHHHHHHHHHhcCCCCcc
Q psy13191 80 HSLFELRSLLLN-GCVMLDLEANSL-------EQIVDLFIEKLRTTESIPDH 123 (139)
Q Consensus 80 hSL~eLR~~l~~-G~vLLDlea~sL-------~~Iad~Vvd~~i~~~~i~~~ 123 (139)
.||+|||.+|.. |-+ ++..| +..++.+++.++..|.|..-
T Consensus 2 ~~L~qlRd~l~~~gr~----s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 2 ASLIQVRDLLALRGRM----EAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred ccHHHHHHHHHHcCcc----cHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 489999999986 444 22222 34567799999999988644
No 8
>cd00211 PTS_IIA_fru PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=33.27 E-value=31 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.8
Q ss_pred hcccccccccccHHHHHHHHHHHHHhcCCCC
Q psy13191 91 NGCVMLDLEANSLEQIVDLFIEKLRTTESIP 121 (139)
Q Consensus 91 ~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~ 121 (139)
.+.+.++.++.+..++.+.+.+.|...|.+.
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~ 33 (136)
T cd00211 3 KENIRLNLKAKSKEEAIEELAQLLVAAGYVE 33 (136)
T ss_pred HHHEEecCCCCCHHHHHHHHHHHHHHcCCCH
Confidence 4667889999999999999999999888754
No 9
>PF08258 WWamide: WWamide peptide; InterPro: IPR013271 This family contain neuropeptides, isolated from ganglia of Achatina fulica (Giant African snail). Each peptide has a Trp residue at both the N- and C-termini. Purified WWamide-1, -2 and -3 showed an inhibitory effect on the phasic contractions of the anterior byssus retractor muscle (ABRM) [].
Probab=31.76 E-value=8.3 Score=16.41 Aligned_cols=7 Identities=57% Similarity=1.574 Sum_probs=4.6
Q ss_pred HHHHhhh
Q psy13191 49 WKETARW 55 (139)
Q Consensus 49 WkEtARW 55 (139)
||+.|-|
T Consensus 1 Wk~MavW 7 (7)
T PF08258_consen 1 WKQMAVW 7 (7)
T ss_pred CcccccC
Confidence 6776655
No 10
>COG1762 PtsN Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=30.79 E-value=56 Score=24.21 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=32.0
Q ss_pred HHHhcccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 88 LLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 88 ~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
.+....+.++..+.|=.++.+.+.+.++..|.+.+
T Consensus 5 ~l~~~~i~~~~~~~sk~e~i~~~~~~L~~~g~i~~ 39 (152)
T COG1762 5 LLNPELIILNLEAKSKEEAIEELAEPLLEAGYITD 39 (152)
T ss_pred hcCHhHeeeccccCCHHHHHHHHHHHHHHcCCCCH
Confidence 35567889999999999999999999999999998
No 11
>PF00359 PTS_EIIA_2: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; InterPro: IPR002178 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 3URR_A 3BJV_A 1A6J_B 2OQ3_A 2FEW_A 1A3A_C 1J6T_A 2OQT_D 3OXP_B 2A0J_A ....
Probab=29.69 E-value=61 Score=23.07 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=29.0
Q ss_pred HHhcccccccccccHHHHHHHHHHHHHhcCCCCcc
Q psy13191 89 LLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPDH 123 (139)
Q Consensus 89 l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~~ 123 (139)
|.+-.+.+|.+.++..++.+.+++.+...|.+...
T Consensus 3 l~~~~i~~~~~~~~~~~~i~~~~~~l~~~~~v~~~ 37 (144)
T PF00359_consen 3 LDKELIFLNVEAKDWEEVIKQLADKLIEQGYVNDK 37 (144)
T ss_dssp HHGGGEEEEET-SSHHHHHHHHHHHHHHTTSB-HH
T ss_pred cChHHeEECCCCCCHHHHHHHHHHHHHHcCCcchH
Confidence 55667888999999999999999999999987765
No 12
>PHA02627 hypothetical protein; Provisional
Probab=23.20 E-value=75 Score=22.34 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHHHHHhcC
Q psy13191 101 NSLEQIVDLFIEKLRTTE 118 (139)
Q Consensus 101 ~sL~~Iad~Vvd~~i~~~ 118 (139)
.+|++||+.|++.++..+
T Consensus 55 e~fsdiaddilesl~eqd 72 (73)
T PHA02627 55 EDFSDIADDVLESLMEQD 72 (73)
T ss_pred cchHHHHHHHHHHHHHcc
Confidence 479999999999998754
No 13
>PRK10372 PTS system L-ascorbate-specific transporter subunit IIA; Provisional
Probab=22.69 E-value=1.1e+02 Score=22.68 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=31.7
Q ss_pred HHHHHHh-cccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 85 LRSLLLN-GCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 85 LR~~l~~-G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
|+..|.. ..|.||.++.|-.++.+.+.+.+...|-+.+
T Consensus 3 ~~~~~~~~~~i~l~~~~~s~~eai~~~~~~L~~~g~v~~ 41 (154)
T PRK10372 3 LRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEP 41 (154)
T ss_pred hHHhhCCcceEEEeCCCCCHHHHHHHHHHHHHHCCCCcH
Confidence 3444555 6899999999999999999999999998863
No 14
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.45 E-value=1.5e+02 Score=21.00 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Q psy13191 77 LSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEK 113 (139)
Q Consensus 77 LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~ 113 (139)
+-=|.|..||+.+.+.. +.....+.|.+..+..
T Consensus 19 vRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~ 51 (92)
T PF10363_consen 19 VRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQ 51 (92)
T ss_pred hHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHH
Confidence 56789999999999998 4555666666655543
No 15
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=92 Score=23.66 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=25.7
Q ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCcccc
Q psy13191 84 ELRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPDHES 125 (139)
Q Consensus 84 eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~~~~ 125 (139)
.||+.+.-|+= -++-+.+=+..++|.||.+|.|.+++.
T Consensus 7 ~l~k~~~~gaG----~~a~~~ek~~klvDelVkkGeln~eEa 44 (108)
T COG3937 7 GLRKLALIGAG----LAAETAEKVQKLVDELVKKGELNAEEA 44 (108)
T ss_pred HHHHHHHhhcc----HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 45555555543 233344556779999999999998864
No 16
>PRK09854 cmtB putative PTS system mannitol-specific transporter subunit IIA; Provisional
Probab=21.24 E-value=1.1e+02 Score=22.25 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhcCCCC
Q psy13191 87 SLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIP 121 (139)
Q Consensus 87 ~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~ 121 (139)
..|.+..+.++..++|-.++.+.+.+.|+..|-+.
T Consensus 5 ~~~~~~~i~~~~~~~~k~e~i~~~~~~l~~~g~v~ 39 (147)
T PRK09854 5 DYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYIS 39 (147)
T ss_pred HhCChhhEEeccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 34777888899999999999999999999999885
No 17
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=20.75 E-value=35 Score=25.34 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=47.6
Q ss_pred CCccCCCcccccchhHHHHHHHHHHhcccc---cccccccHHHHHHHHHHHHHhcCCCCccccchhhhHhhhhhcc
Q psy13191 66 GNRWSKPHVATLSLHSLFELRSLLLNGCVM---LDLEANSLEQIVDLFIEKLRTTESIPDHESSMGIWSMKKSMNN 138 (139)
Q Consensus 66 ~~rWskPHVs~LSfhSL~eLR~~l~~G~vL---LDlea~sL~~Iad~Vvd~~i~~~~i~~~~~~~~~~~~~~~~~~ 138 (139)
-|+||+=|..+|-=|.=...+..+.+|... .|+++. -.+-.+.++.+|..+.-+.++...-.-+..=+.|||
T Consensus 23 iGkyG~~~~~yLke~~p~~Y~~ll~~g~L~~~l~eid~~-A~e~~e~l~~q~~~~~gvtE~LK~~dqm~wv~~mN~ 97 (111)
T PF14198_consen 23 IGKYGRMRKRYLKEHKPILYNNLLLSGKLNEHLAEIDEQ-AQERFERLVEQMAEKEGVTEELKAEDQMEWVRRMNN 97 (111)
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHcchHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCcHhhhhcCHHHHHHHHHH
Confidence 489999999998877777777778888742 122221 223446688888888888865555455555556665
No 18
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=20.71 E-value=89 Score=21.96 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHHhcC
Q psy13191 82 LFELRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTE 118 (139)
Q Consensus 82 L~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~ 118 (139)
+.||-+.+..--.=.|.+ .+|++||+.|++.++..+
T Consensus 37 i~ellniltelgcdvdfd-e~fsdiaddilesl~eqd 72 (73)
T PF06076_consen 37 IMELLNILTELGCDVDFD-ENFSDIADDILESLMEQD 72 (73)
T ss_pred HHHHHHHHHHhCCCcccc-cchhHHHHHHHHHHHHcc
Confidence 344444444322223333 479999999999998754
No 19
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=20.13 E-value=1.2e+02 Score=21.39 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhcccccccccccHHHHHHHHHH
Q psy13191 80 HSLFELRSLLLNGCVMLDLEANSLEQIVDLFIE 112 (139)
Q Consensus 80 hSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd 112 (139)
.-.-+||.+|.+|+.-+|. ..||+.+++
T Consensus 66 ~kV~~ik~aI~~G~Y~vd~-----~~iA~~ml~ 93 (95)
T TIGR03824 66 EKVAEIKAAIANGSYKVDA-----EKIADKLLD 93 (95)
T ss_pred HHHHHHHHHHHcCCCCCCH-----HHHHHHHHh
Confidence 4456899999999997776 457777665
No 20
>PF10052 DUF2288: Protein of unknown function (DUF2288); InterPro: IPR018741 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.03 E-value=2.4e+02 Score=20.62 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=36.1
Q ss_pred HHHHHHHhcccccccccccHHHHHHHH-------HHHHHhcCCCC-ccccchhhh
Q psy13191 84 ELRSLLLNGCVMLDLEANSLEQIVDLF-------IEKLRTTESIP-DHESSMGIW 130 (139)
Q Consensus 84 eLR~~l~~G~vLLDlea~sL~~Iad~V-------vd~~i~~~~i~-~~~~~~~~~ 130 (139)
+|++.+.+|.++.=.+.-.|-++|..+ |...+.+|+|. +.+...+.|
T Consensus 18 eL~~hfarg~vI~V~~~LDLveVa~aia~D~~~~V~~Wi~~g~v~k~s~~qa~~W 72 (93)
T PF10052_consen 18 ELQPHFARGAVIVVAPELDLVEVAEAIAEDNTAQVQAWIESGQVAKPSDEQAQDW 72 (93)
T ss_pred HHHHHHhCCCEEEECCCCCHHHHHHHHHhcCHHHHHHHHHCCCcCCCCHHHHHHH
Confidence 788899999999988999999888764 67889999884 333333344
Done!