Query psy13191
Match_columns 139
No_of_seqs 109 out of 173
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:30:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyn_P BAND 3 anion transport 100.0 1.9E-39 6.4E-44 279.0 1.2 99 26-125 50-150 (379)
2 3ky9_A Proto-oncogene VAV; cal 69.7 1.9 6.5E-05 37.5 1.9 41 49-96 7-47 (587)
3 3oxp_A Phosphotransferase enzy 57.9 8.2 0.00028 27.2 3.2 38 85-122 5-42 (150)
4 3bjv_A RMPA; alpha/beta three 55.7 11 0.00038 26.8 3.6 38 85-122 4-41 (161)
5 2oqt_A Hypothetical protein SP 54.6 12 0.0004 26.8 3.6 38 85-122 5-42 (162)
6 2jv8_A Uncharacterized protein 53.5 7.4 0.00025 26.2 2.1 32 65-96 35-66 (73)
7 1nvp_D Transcription initiatio 47.6 10 0.00036 27.3 2.3 30 100-130 7-36 (108)
8 1qa6_A Ribosomal protein L11; 39.1 79 0.0027 20.6 6.3 49 60-113 13-61 (67)
9 1nh2_D Transcription initiatio 37.8 18 0.00062 26.6 2.3 30 100-130 11-40 (121)
10 1a3a_A Mannitol-specific EII; 37.5 16 0.00054 25.5 1.9 34 89-122 5-40 (148)
11 1hc8_A Ribosomal protein L11; 34.2 1E+02 0.0035 20.5 5.8 49 60-113 18-66 (76)
12 2oq3_A Mannitol-specific crypt 31.6 8.9 0.0003 26.9 -0.3 36 87-122 8-43 (150)
13 3lf6_A Putative phosphotransfe 31.3 32 0.0011 24.8 2.7 34 89-122 14-47 (161)
14 2a0j_A PTS system, nitrogen re 29.1 39 0.0013 23.3 2.8 36 85-121 4-39 (149)
15 2ztg_A Alanyl-tRNA synthetase; 27.8 37 0.0013 31.6 3.1 43 85-131 370-413 (739)
16 1mms_A Protein (ribosomal prot 25.5 2E+02 0.0068 21.2 6.3 53 56-113 78-130 (140)
17 1oei_A Major prion protein; oc 23.6 29 0.00098 19.4 1.0 6 68-73 12-17 (26)
18 2l3g_A RHO guanine nucleotide 23.4 31 0.0011 24.8 1.4 41 46-95 11-51 (126)
19 1a6j_A Nitrogen regulatory IIA 23.0 19 0.00065 25.6 0.2 37 87-123 12-48 (163)
20 4axg_C Protein CUP; 4E-BP, mRN 22.7 9.1 0.00031 28.6 -1.6 50 77-132 32-81 (130)
21 1rp3_B Anti sigma factor FLGM; 22.4 94 0.0032 20.8 3.7 30 79-113 57-86 (88)
No 1
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo sapiens} SCOP: d.112.1.2
Probab=100.00 E-value=1.9e-39 Score=278.97 Aligned_cols=99 Identities=31% Similarity=0.724 Sum_probs=89.2
Q ss_pred CCCCCCchhhhhHHhh--ccCcchhHHHHhhhhhhhhhcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccH
Q psy13191 26 ASHHAHPLFSEMEELV--RNGEEMEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSL 103 (139)
Q Consensus 26 ~~~~~h~lFvEl~EL~--~~~~~~eWkEtARWIkfEE~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL 103 (139)
.+|.+|++||||+||+ .+|++++|||||||||||||||++ +|||||||||||||||++||+||.+|+|+||++++|+
T Consensus 50 ~~~~~~~~f~el~eL~~~~~~~~~~W~EtaRWikfEE~ve~~-~rW~kphv~~Ls~~SLmeLr~~L~~g~IlLDl~a~sk 128 (379)
T 1hyn_P 50 SHPGTHKVYVELQELVMDEKNQELRWMEAARWVQLEENLGEN-GAWGRPHLSHLTFWSLLELRRVFTKGTVLLDLQETSL 128 (379)
T ss_dssp ------CCEEEEEEEEEETTTCCEEEEEEEEEESSEEEBCTT-SCBCCCBCCCBCHHHHHHHHHHHHTCEEEEEECCCSH
T ss_pred CCCCCCceeeeHhhhccCCCCCcceeHhhhhhhhheeccccC-CccCCCcccccCHHHHHHHHHhcCcceEEeCCCCCCH
Confidence 3678999999999996 578999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccc
Q psy13191 104 EQIVDLFIEKLRTTESIPDHES 125 (139)
Q Consensus 104 ~~Iad~Vvd~~i~~~~i~~~~~ 125 (139)
++|++.|++.|+.+|+|+++++
T Consensus 129 ~eii~~l~~~l~~~g~v~~~d~ 150 (379)
T 1hyn_P 129 AGVANQLLDRFIFEDQIRPQDR 150 (379)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGH
T ss_pred HHHHHHHHHHHHHcCCCchhhH
Confidence 9999999999999999986544
No 2
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=69.72 E-value=1.9 Score=37.53 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=24.2
Q ss_pred HHHHhhhhhhhhhcccCCCccCCCcccccchhHHHHHHHHHHhccccc
Q psy13191 49 WKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVML 96 (139)
Q Consensus 49 WkEtARWIkfEE~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLL 96 (139)
|+|+|+|+.==-.+. ..|-++..=-...+|..+|.+|++|-
T Consensus 7 w~~~~~Wl~~~~~l~-------~~~~~~~~~~~~~~l~~~L~~G~~Lc 47 (587)
T 3ky9_A 7 WRQCTHWLIQCRVLP-------PSHRVTWEGAQVCELAQALRDGVLLC 47 (587)
T ss_dssp HHHHHHHHHHTTCSC-------TTSTTTSTTCCHHHHHHHHSSTHHHH
T ss_pred HHHHHHHHHHhCCCC-------CcccccCCCCChhhHHHHhCcHHHHH
Confidence 999999996211111 11333322333567788899998843
No 3
>3oxp_A Phosphotransferase enzyme II, A component; structural genomics, center for structural genomics of infec diseases, csgid, pestis CO92; HET: GOL; 1.20A {Yersinia pestis}
Probab=57.91 E-value=8.2 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=34.2
Q ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 85 LRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 85 LR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
|...|....+.+|.++.|-.++.+.+.+.+...|.+.+
T Consensus 5 l~~~l~~~~i~~~~~~~~~~e~i~~~~~~L~~~g~v~~ 42 (150)
T 3oxp_A 5 LKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEA 42 (150)
T ss_dssp HHHHCCGGGEEEESCCSSHHHHHHHHHHHHHHTTSBCT
T ss_pred HHHHcChhhEEEeCCCCCHHHHHHHHHHHHHHcCCCCH
Confidence 44568889999999999999999999999999999874
No 4
>3bjv_A RMPA; alpha/beta three layer sandwich, transferase; 2.40A {Streptococcus mutans}
Probab=55.66 E-value=11 Score=26.85 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=33.8
Q ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 85 LRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 85 LR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
|...|....+.+|.+++|-.++.+.+.+.+...|.+.+
T Consensus 4 l~~~l~~~~i~~~~~~~~~~e~i~~l~~~L~~~g~v~~ 41 (161)
T 3bjv_A 4 AQAFKENHSIRLGLTAKDWKEAVKLSVTPLIESGAVKP 41 (161)
T ss_dssp HHHHHHHTCEEEEECCSSHHHHHHHHHHHHHHHTSBCT
T ss_pred HHHhcCHhhEEEeCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 44568889999999999999999999999999998864
No 5
>2oqt_A Hypothetical protein SPY0176; APC29699, putative PTS IIA domain, streptococcus pyogenes M1 GAS, structural genomics, PSI-2; 2.41A {Streptococcus pyogenes serotype M1}
Probab=54.60 E-value=12 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=34.0
Q ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 85 LRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 85 LR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
|...|....+.+|.++.|-.++.+.+.+.+...|.+.+
T Consensus 5 l~~ll~~~~i~~~~~~~~~~e~i~~l~~~L~~~g~v~~ 42 (162)
T 2oqt_A 5 KQALIDNNSIRLGLSADTWQEAVRLAVQPLIDSKAVTS 42 (162)
T ss_dssp HHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHhcChhhEEEeCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 45568899999999999999999999999999998863
No 6
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=53.47 E-value=7.4 Score=26.16 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCCccCCCcccccchhHHHHHHHHHHhccccc
Q psy13191 65 GGNRWSKPHVATLSLHSLFELRSLLLNGCVML 96 (139)
Q Consensus 65 ~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLL 96 (139)
..+.||.-+++|--+.||+.|-++|.+.+|-|
T Consensus 35 vknkwssrylpytqydslldlaraiirdtvef 66 (73)
T 2jv8_A 35 VKNKWSSRYLPYTQYDSLLDLARAIIRDTVEF 66 (73)
T ss_dssp SSCCCCCTTSTTCCCSCHHHHHHHHHHHCGGG
T ss_pred HhcccccccCCchhhHHHHHHHHHHHhhceee
Confidence 35899999999999999999999998887744
No 7
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=47.61 E-value=10 Score=27.29 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccccchhhh
Q psy13191 100 ANSLEQIVDLFIEKLRTTESIPDHESSMGIW 130 (139)
Q Consensus 100 a~sL~~Iad~Vvd~~i~~~~i~~~~~~~~~~ 130 (139)
.+|+..-....+|+|+.+|.|.|++. |.||
T Consensus 7 ~stiG~aL~dtLdEli~~~~Isp~la-~kVL 36 (108)
T 1nvp_D 7 NTTLGNSLQESLDELIQSQQITPQLA-LQVL 36 (108)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCHHHH-HHHH
T ss_pred hChHHHHHHHHHHHHHHcCCCCHHHH-HHHH
Confidence 45666667889999999999999874 5555
No 8
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=39.14 E-value=79 Score=20.61 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=37.5
Q ss_pred hhcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Q psy13191 60 EDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEK 113 (139)
Q Consensus 60 E~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~ 113 (139)
=.++.+.+.=++-||+.+||.-+.|.=+.... |+.+.+|.+++-.|+-.
T Consensus 13 agi~kgs~~p~~~~vG~it~~qv~eIA~~K~~-----dl~a~~l~~a~k~I~GT 61 (67)
T 1qa6_A 13 AGIESGSGEPNRNKVATIKRDKVREIAELKMP-----DLNAASIEAAMRMIEGT 61 (67)
T ss_dssp HTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGG-----GCCCSSHHHHHHHHHHH
T ss_pred hCCCCCCCCCCCcccceecHHHHHHHHHHHHH-----hhcccCHHHHHHHHHHH
Confidence 34455545445669999999999999776543 89999999998888754
No 9
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=37.82 E-value=18 Score=26.63 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCccccchhhh
Q psy13191 100 ANSLEQIVDLFIEKLRTTESIPDHESSMGIW 130 (139)
Q Consensus 100 a~sL~~Iad~Vvd~~i~~~~i~~~~~~~~~~ 130 (139)
.+++..-....+|+|+.+|.|.|++. |.||
T Consensus 11 ~StiG~aL~dtLdEli~~~~Isp~la-~kVL 40 (121)
T 1nh2_D 11 RSTIGNSLVDALDTLISDGRIEASLA-MRVL 40 (121)
T ss_dssp GSHHHHHHHHHHHHHHHTTSSCHHHH-HHHH
T ss_pred hchHHHHHHHHHHHHHHcCCCCHHHH-HHHH
Confidence 45666666889999999999999874 5555
No 10
>1a3a_A Mannitol-specific EII; phosphoenolpyruvate dependent phosphotransferase system, IIA histidine phosphorylation, phosphotransferase; 1.80A {Escherichia coli} SCOP: d.112.1.1 PDB: 1j6t_A 2few_A*
Probab=37.45 E-value=16 Score=25.46 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=30.1
Q ss_pred HHh--cccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 89 LLN--GCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 89 l~~--G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
|.. ..+.+|.++.|-.++.+.+.+.+...|.+.+
T Consensus 5 l~~~~~~i~~~~~~~~~~e~i~~~~~~L~~~g~v~~ 40 (148)
T 1a3a_A 5 FKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEP 40 (148)
T ss_dssp CCCCGGGEECSCCCSSHHHHHHHHHHHHHHTTSBCT
T ss_pred hccccCeEEEeCCCCCHHHHHHHHHHHHHHcCCCCH
Confidence 455 7899999999999999999999999998863
No 11
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=34.22 E-value=1e+02 Score=20.51 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=37.3
Q ss_pred hhcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Q psy13191 60 EDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEK 113 (139)
Q Consensus 60 E~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~ 113 (139)
=.++.+.+.=++-||+.+|+.-+.|.=+... -|+.+.+|.+++-.|+-.
T Consensus 18 agi~kgs~~p~~~~vG~it~~qv~eIA~~K~-----~dl~a~~l~~a~k~I~GT 66 (76)
T 1hc8_A 18 AGIESGSGEPNRNKVATIKRDKVREIAELKM-----PDLNAASIEAAMRMIEGT 66 (76)
T ss_dssp HTCSCCCSSTTTCCCEEECHHHHHHHHHHSG-----GGCCCSSHHHHHHHHHHH
T ss_pred hCCCCCCCCCCCcEeeeecHHHHHHHHHHHH-----HhhCCCCHHHHHHHHHHH
Confidence 3444454544566999999999999876644 389999999999888755
No 12
>2oq3_A Mannitol-specific cryptic phosphotransferase enzyme IIA component; solution structure; NMR {Escherichia coli}
Probab=31.65 E-value=8.9 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 87 SLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 87 ~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
..|....+.+|.+++|-.++.+.+.+.+...|.+.+
T Consensus 8 ~~l~~~~i~~~~~~~~~~e~i~~l~~~L~~~g~v~~ 43 (150)
T 2oq3_A 8 DYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISE 43 (150)
T ss_dssp GGCCSTTEEEESCCSSHHHHHHHTTHHHHTTTSBCH
T ss_pred HhcCcccEEEecCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 346788999999999999999999999999998864
No 13
>3lf6_A Putative phosphotransferase system; epitope-scaffold, immune system; 1.90A {Artificial gene} SCOP: d.112.1.1 PDB: 1xiz_A
Probab=31.30 E-value=32 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHhcccccccccccHHHHHHHHHHHHHhcCCCCc
Q psy13191 89 LLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122 (139)
Q Consensus 89 l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~ 122 (139)
|....+.+|.++.|-.++.+.+.+.|...|.+.+
T Consensus 14 l~~~~I~~~~~~~~~~eai~~~~~~L~~~g~v~~ 47 (161)
T 3lf6_A 14 FRRHYVRHLPKEVSQNDIIKALASPLINDGMVVS 47 (161)
T ss_dssp CCGGGEEEECTTCCHHHHHHHHHHHHHHTTSBCT
T ss_pred eCHHHeEecCCCCCHHHHHHHHHHHHHHcCCCcH
Confidence 4456788999999999999999999999998863
No 14
>2a0j_A PTS system, nitrogen regulatory IIA protein; nitrogen regulation, structural genomics, OPPF, oxford prote production facility; 2.50A {Neisseria meningitidis}
Probab=29.12 E-value=39 Score=23.34 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCC
Q psy13191 85 LRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIP 121 (139)
Q Consensus 85 LR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~ 121 (139)
|...|....+.+|.+++|-.++.+.+.+.+.. |.+.
T Consensus 4 l~~~l~~~~i~~~~~~~~~~e~i~~~~~~L~~-~~~~ 39 (149)
T 2a0j_A 4 IGEILPLSHIVLDMEVGSKKRLFEEAGLLLER-ESSL 39 (149)
T ss_dssp HHHHCCGGGEEEEECCCCHHHHHHHHHHHHSS-TTSS
T ss_pred hHHhCCcceEEecCCCCCHHHHHHHHHHHHHh-ccCC
Confidence 45568889999999999999999999999987 6653
No 15
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=27.81 E-value=37 Score=31.57 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=34.2
Q ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCcc-ccchhhhH
Q psy13191 85 LRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPDH-ESSMGIWS 131 (139)
Q Consensus 85 LR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~~-~~~~~~~~ 131 (139)
|||++..| .+|..+.. |.++++.|++.|-. +|... +.+..|+.
T Consensus 370 lRRa~r~~-~~lg~~~~-l~~lv~~~~~~m~~--el~~~~~~I~~vi~ 413 (739)
T 2ztg_A 370 IRRSLRLA-EELELGLD-LYDLVEMHKKILGF--EFDVPLSTVQEILE 413 (739)
T ss_dssp HHHHHHHH-HHTTCSSC-HHHHHHHHHHHHCC--CCSSCHHHHHHHHH
T ss_pred HHHHHHHH-HHhCCCcc-HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 79999999 66899988 99999999999977 55554 55666654
No 16
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=25.45 E-value=2e+02 Score=21.24 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=40.0
Q ss_pred hhhhhhcccCCCccCCCcccccchhHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Q psy13191 56 IKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEK 113 (139)
Q Consensus 56 IkfEE~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~ 113 (139)
|+=+=.++.+...=++-||+.+||.-+.|.=+.... |+.+.+|.+++-.|+-.
T Consensus 78 l~ka~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~-----dl~a~~l~~a~k~I~GT 130 (140)
T 1mms_A 78 LKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMP-----DLNANSLEAAMKIIEGT 130 (140)
T ss_dssp HHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGG-----GCCCSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHH-----hhccccHHHHHHHHHHH
Confidence 333444555555556779999999999999777554 89999999998888755
No 17
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=23.59 E-value=29 Score=19.36 Aligned_cols=6 Identities=50% Similarity=1.592 Sum_probs=2.9
Q ss_pred ccCCCc
Q psy13191 68 RWSKPH 73 (139)
Q Consensus 68 rWskPH 73 (139)
-|+.||
T Consensus 12 ~wgqph 17 (26)
T 1oei_A 12 GWGQPH 17 (26)
T ss_dssp SSTTTC
T ss_pred cCCCCC
Confidence 355554
No 18
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=23.42 E-value=31 Score=24.76 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=22.6
Q ss_pred chhHHHHhhhhhhhhhcccCCCccCCCcccccchhHHHHHHHHHHhcccc
Q psy13191 46 EMEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLNGCVM 95 (139)
Q Consensus 46 ~~eWkEtARWIkfEE~ve~~~~rWskPHVs~LSfhSL~eLR~~l~~G~vL 95 (139)
+.+|.|.++||.-==.+++. .+|-.+. ..+ |+.+|.+|++|
T Consensus 11 ~~~~~e~~~WI~~~~~L~~~----~~~~~~~---~~~--l~~~LkdGvvL 51 (126)
T 2l3g_A 11 MNSAEQTVTWLITLGVLESP----KKTISDP---EGF--LQASLKDGVVL 51 (126)
T ss_dssp CCHHHHHHHHHHHTTSSCCC----SSCCSCH---HHH--HHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHhCcccc----CCCCCCh---hhH--HHHHHccHHHH
Confidence 45799999999631111221 1222122 222 57789999884
No 19
>1a6j_A Nitrogen regulatory IIA protein; phosphotransferase system, nitrogen regulation; 2.35A {Escherichia coli} SCOP: d.112.1.1
Probab=23.03 E-value=19 Score=25.59 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.0
Q ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhcCCCCcc
Q psy13191 87 SLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPDH 123 (139)
Q Consensus 87 ~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~~ 123 (139)
..|....+.+|.++.|-.++.+.+.+.+...|.+.++
T Consensus 12 ~~l~~~~i~~~~~~~~k~e~i~~~~~~L~~~~~v~~~ 48 (163)
T 1a6j_A 12 SVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQ 48 (163)
T ss_dssp GTCCGGGEEEEECCSSHHHHHHHHHHHHHHHHTCCHH
T ss_pred HhcCcccEEeCCCCCCHHHHHHHHHHHHHHcCCCCHH
Confidence 3477889999999999999999999999988877653
No 20
>4axg_C Protein CUP; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=22.67 E-value=9.1 Score=28.59 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHhcCCCCccccchhhhHh
Q psy13191 77 LSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPDHESSMGIWSM 132 (139)
Q Consensus 77 LSfhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~~i~~~~i~~~~~~~~~~~~ 132 (139)
-|=+.|+++|..|-+..+==--+.-++|-|| -.|.. +|....|+|.||.-
T Consensus 32 YtR~~LldIRn~M~~ALmHRSKEsF~MPRIA--TCDDI----ELE~RLRRMNlWR~ 81 (130)
T 4axg_C 32 YTRSRLMDIRNGMFNALMHRSKESFVMPRIA--TCDDI----ELEGRLRRMNIWRT 81 (130)
T ss_dssp CCHHHHHHHHHCC------------------------C----THHHHHHHTTCBCC
T ss_pred hHHHHHHHHHHHHHHHHHHhchhhccccccc--cccch----hHHHHHHhhhheec
Confidence 4678999999988876554334445666666 12211 44566789999953
No 21
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=22.43 E-value=94 Score=20.84 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Q psy13191 79 LHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEK 113 (139)
Q Consensus 79 fhSL~eLR~~l~~G~vLLDlea~sL~~Iad~Vvd~ 113 (139)
-.-.-+||..|.+|+--.| ...||+.+++.
T Consensus 57 ~~kV~~iK~aI~~GtY~vd-----~~~iA~kml~~ 86 (88)
T 1rp3_B 57 EKKVKELKEKIEKGEYEVS-----DEKVVKGLIEF 86 (88)
T ss_dssp HHHHHHHHHHHHTTCCCCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHH
Confidence 4466789999999999777 45688877765
Done!