RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13191
(139 letters)
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 132 bits (334), Expect = 1e-38
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 11 PSQRVQFILGEDVDDASHHA-HPLFSEMEELVR--NGEEMEWKETARWIKFEEDVEEGGN 67
P+ D SH H ++ E++ELV +E+ W E ARW++ EE++ E G
Sbjct: 34 PAAHDTEATATDYHTTSHPGTHKVYVELQELVMDEKNQELRWMEAARWVQLEENLGENG- 92
Query: 68 RWSKPHVATLSLHSLFELRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTESIPD 122
W +PH++ L+ SL ELR + G V+LDL+ SL + + +++ + I
Sbjct: 93 AWGRPHLSHLTFWSLLELRRVFTKGTVLLDLQETSLAGVANQLLDRFIFEDQIRP 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 7e-06
Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 51/168 (30%)
Query: 1 LNFSPLSVT---PPSQRVQF--------------ILGEDVDDASHHAHPLFSEMEELVR- 42
FS L + P + + F ++ E + D +F E+ E
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 43 ---NGEEMEWKET------------ARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRS 87
E+ T A + ED++ G P AT + HSL E +
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAF----EDLKSKGL---IPADATFAGHSLGEYAA 1769
Query: 88 LLLNGCVMLDLEANSLEQIVDLFIEKLR---TTESIPDHESSMGIWSM 132
L VM S+E +V++ R ++P E + M
Sbjct: 1770 LASLADVM------SIESLVEVV--FYRGMTMQVAVPRDELGRSNYGM 1809
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 14 RVQ-FILGEDVDDASHHAHPLFSEMEELVRNGEEMEWKETARWIKFEEDVEEG 65
R++ FI+ ++ + V G+ I++ E V +G
Sbjct: 270 RIEGFIVY---RWQGDVREKALRDLMKWVLEGK----------IQYHEHVTKG 309
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 27.4 bits (61), Expect = 1.8
Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 33/139 (23%)
Query: 16 QFILGEDVDDASHHAHPLFSE-------ME-ELVRNGEEME--WKETARWIKFEEDVEEG 65
F+LGE ++ A P + M E R + + A I+
Sbjct: 168 HFVLGETIEQALERGKPRSGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGN 227
Query: 66 GNRWSKPHVAT-LS-LHSLFE--------------LRSLLL-----NGCVMLDLE-ANSL 103
+P ++ LS LH FE L L + +D E A+ L
Sbjct: 228 HALPDRPGISVKLSALHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRL 287
Query: 104 EQIVDLFIEKLRTTESIPD 122
E +D+ S+
Sbjct: 288 ELSLDVI-AATLADPSLKG 305
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription
regulation, TETR, DNA-binding transcription; 2.90A
{Pseudomonas aeruginosa}
Length = 210
Score = 26.7 bits (59), Expect = 2.4
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 23/119 (19%)
Query: 10 PPSQRVQFILGEDVDDASHHAHPLFSEMEELVRNGEEMEWKETARWIK-------FEEDV 62
QRV IL + S PL E L + G+ R I+ +
Sbjct: 100 GSVQRVLEILYLKCE-RSDENEPLLRRRELLEKQGQRF----GLRQIRRAVERGELPARL 154
Query: 63 EEGGNRWSKPHVATLSLHSLFE--LRSLLLNGCVMLDLEANSLEQIVDLFIEKLRTTES 119
+ +A++ L SL++ +L + D E++ ++ LR++
Sbjct: 155 D--------VELASIYLQSLWDGICGTLAWTERLRDDPWNR-AERMFRAGLDSLRSSPY 204
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 26.5 bits (58), Expect = 3.2
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 16 QFILGEDVDDASHHAHPLFSEMEELVRN--GEEMEWKETARW 55
QF+ GE + +A +A L + + GE A+
Sbjct: 173 QFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQA 214
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 26.4 bits (59), Expect = 3.9
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 15/53 (28%)
Query: 14 RVQ-FILGEDVDDASHHAHPLFSEMEELVRNGEEMEWKETARWIKFEEDVEEG 65
R+Q F+ V D + +R G+ I + EDV +G
Sbjct: 280 RIQGFV----VSDFYDKYSKFLEFVLPHIREGK----------ITYVEDVADG 318
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A
{Thermus thermophilus} PDB: 2g37_A*
Length = 327
Score = 26.1 bits (58), Expect = 3.9
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 16 QFILGEDVDDASHHAHPL 33
+++ GE +++A A L
Sbjct: 54 RYVAGETLEEALKAAEAL 71
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 26.5 bits (59), Expect = 3.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 16 QFILGEDVDDASHHAHPL 33
QFI+GE +A + L
Sbjct: 140 QFIVGETTKEAVKNLEKL 157
>2kc5_A Hydrogenase-2 operon protein HYBE; chaperone; NMR {Escherichia
coli}
Length = 162
Score = 26.1 bits (57), Expect = 4.1
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 11 PSQRVQFILGEDVDDASHHAHPLFSEMEELVRNGE-EMEWKETAR 54
P + F +GE + + + L S + + E + + AR
Sbjct: 88 PYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCAR 132
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 26.0 bits (58), Expect = 4.5
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 16/42 (38%)
Query: 36 EMEELVR------NGEEM-----EWKETARWIKFEEDVEEGG 66
+ G+++ +ETA V G
Sbjct: 401 GLMSCFDQILSQEKGKKLRENLRALRETAD-----RAVGPKG 437
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 25.8 bits (56), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 16 QFILGEDVDDASHHAHPL 33
QF+ GE + +A +A L
Sbjct: 258 QFVTGETIAEALANARKL 275
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 25.3 bits (55), Expect = 6.5
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 6 LSVTPPSQRVQFILGEDV 23
V P ++ ++G++
Sbjct: 7 FRVIGPGHPIRALVGDEA 24
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription
regulation, transcription repressor, drug binding,
transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB:
3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Length = 216
Score = 25.5 bits (56), Expect = 6.9
Identities = 9/98 (9%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 27 SHHAHPLFSEMEELVRNGEEMEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFE-- 84
+ + + N + + + K + + N + ++ +
Sbjct: 125 VYDKDRHLANW--IENNQQNFSYNILMGFFKQQNNSYMKKN----AEKLAVLFCTMLKEP 178
Query: 85 --LRSLLLNGCVMLDLEANSL-EQIVDLFIEKLRTTES 119
++L+N + E E +V++F+ + ++++
Sbjct: 179 YHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA 216
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein
structure initiative, MCSG, PSI; HET: P33; 1.75A
{Geobacillus stearothermophilus} SCOP: d.58.4.10
Length = 248
Score = 25.3 bits (55), Expect = 7.8
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 95 MLDLEANSLEQIVDLFIEKLRTTES 119
+ L ++ Q L + ++R E
Sbjct: 198 GVTLFSDDALQFKKL-VYEMRFDEV 221
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 25.2 bits (55), Expect = 7.8
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 98 LEANSLEQIVDLFIEKLRT---------TES-IPDHESSMGIWSMKKSMN 137
+++ + + T IPD SS G +S K +
Sbjct: 31 SNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLG 80
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Length = 129
Score = 24.9 bits (54), Expect = 9.0
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 8 VTPPSQRVQFILGEDVDDASHHAHPLFSEMEELVRN-GEEMEWKETARWIKF 58
+ + LG+ D + H +P FSE +V N + W + R
Sbjct: 21 IADGTDGFVINLGQGTDKLNLHFNPRFSEST-IVCNSLDGSNWGQEQREDHL 71
>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
d.58.4.10
Length = 249
Score = 24.9 bits (54), Expect = 9.1
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 95 MLDLEANSLEQIVDLFIEKLRTTES 119
+DL + Q + + ++R E
Sbjct: 199 GVDLFSEDPVQFKKI-VYEMRFDEV 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,185,068
Number of extensions: 118478
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 37
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)