RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13191
         (139 letters)



>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 293

 Score =  137 bits (347), Expect = 1e-41
 Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 33  LFSEMEELVR--NGEEMEWKETARWIKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLL 90
           ++ E++ELV     +E+ W E ARW++ EE++ E G  W +PH++ L+  SL ELR +  
Sbjct: 2   VYVELQELVMDEKNQELRWMEAARWVQLEENLGENG-AWGRPHLSHLTFWSLLELRRVFT 60

Query: 91  NGCVMLDLEANSLEQIVDLFIEKLRTTESIPDHE 124
            G V+LDL+  SL  + +  +++    + I   +
Sbjct: 61  KGTVLLDLQETSLAGVANQLLDRFIFEDQIRPQD 94


>d1t0tv_ d.58.4.10 (V:) YwfI homologue {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 243

 Score = 25.6 bits (56), Expect = 2.1
 Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 95  MLDLEANSLEQIVDLFIEKLRTTE 118
            + L ++   Q   L + ++R  E
Sbjct: 193 GVTLFSDDALQFKKL-VYEMRFDE 215


>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId:
           1061]}
          Length = 129

 Score = 25.0 bits (54), Expect = 2.3
 Identities = 8/45 (17%), Positives = 13/45 (28%)

Query: 95  MLDLEANSLEQIVDLFIEKLRTTESIPDHESSMGIWSMKKSMNNL 139
              LE      +  LF     +T+     E+   IW+        
Sbjct: 40  AAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAK 84


>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
           TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 24.8 bits (54), Expect = 4.5
 Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 95  MLDLEANSLEQIVDLFIEKLRTTE 118
            +DL +    Q   + + ++R  E
Sbjct: 197 GVDLFSEDPVQFKKI-VYEMRFDE 219


>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse
           (Mus musculus), mitochondrial [TaxId: 10090]}
          Length = 130

 Score = 24.1 bits (52), Expect = 4.6
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 14  RVQFILGED--VDDASH------HAHPLFSEMEELVRNGEEMEWKETARWIKFEEDVEEG 65
           ++Q  + E   + DA         A    S   E V+     E       IK  +  +E 
Sbjct: 38  KLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALT----IKNTDIAKEL 93

Query: 66  GNRWSKPHVATLSLHSL 82
                K H + L+  ++
Sbjct: 94  CLPPVKLHCSMLAEDAI 110


>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG)
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 126

 Score = 24.2 bits (51), Expect = 5.1
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 6  LSVTPPSQRVQFILGEDV 23
            V  P   ++ ++G++ 
Sbjct: 3  FRVIGPGHPIRALVGDEA 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 531,079
Number of extensions: 22475
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 13
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)