BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13192
(401 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56175|RCL1_DROME Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3
Length = 384
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/301 (53%), Positives = 216/301 (71%), Gaps = 3/301 (0%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
EYE++L+RL+DK+TNGT +E+N GT+++F PG+L GG + H+CC +RGIGYYL+ +A
Sbjct: 49 REYEISLIRLLDKITNGTKIELNPAGTSVMFSPGLLHGGQLNHDCCVQRGIGYYLDALIA 108
Query: 75 LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
L PFCK LQ +RGVTN++ PSVD K L +LK+FL+VD G+EL + +RG+ P GG
Sbjct: 109 LGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALSLLKRFLLVDEGLELKVVRRGVAPLGG 168
Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
GEI F CP+ KS++ +Q + G +KRIRGTV+A +VSPA+ANR V+ AKG +L +LPDVY
Sbjct: 169 GEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSPAMANRTVEAAKGCMLKFLPDVY 228
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVS---PPPPATRTVPETLGEQLAYN 251
+ D KG SG SPGFG + AE++ GV AD S T ++PE LG+++A
Sbjct: 229 IYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTREESEDTPSIPENLGKEVALR 288
Query: 252 LLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
LL+EI RGG VDSS+Q L LY+AL QK VS+ L G LS YTV FL+HL+ FF + FKLE
Sbjct: 289 LLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYTVHFLQHLRDFFSITFKLE 348
Query: 312 H 312
+
Sbjct: 349 N 349
>sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens
GN=RCL1 PE=1 SV=3
Length = 373
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/298 (56%), Positives = 220/298 (73%), Gaps = 1/298 (0%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
++E + +RL+DK+TNG+ +E+N+TGTTL +QPG+L GG ++H+C RGIGYYLE L
Sbjct: 45 RDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLESLLC 104
Query: 75 LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
LAPF K L+IV+RGVTN+Q DPSVD KA LP+LKQF + EL I +RGM P GG
Sbjct: 105 LAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKIVRRGMPPGGG 164
Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
GE+ F+CP+ K +KP+Q D GKIKRIRG +++RVSP +ANRIVD+A+ IL ++PD+Y
Sbjct: 165 GEVVFSCPVRKVLKPIQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNKFIPDIY 224
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTAD-AVSPPPPATRTVPETLGEQLAYNLL 253
+ DH KG SGKSPGFG S+ AE+++G L+A+ A +P +PE LG A LL
Sbjct: 225 IYTDHMKGVNSGKSPGFGLSLVAETTSGTFLSAELASNPQGQGAAVLPEDLGRNCARLLL 284
Query: 254 EEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
EEI RGG VDS+ QSL L M L Q+DVS++L+GPLSPYT++FLRHLK FF + FK+E
Sbjct: 285 EEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIE 342
>sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus
GN=Rcl1 PE=2 SV=1
Length = 373
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/298 (56%), Positives = 219/298 (73%), Gaps = 1/298 (0%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
++E + +RL+DK+TNG+ +E+N+TGTTL +QPG+L GG ++H+C RGIGYYLE L
Sbjct: 45 RDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLEALLC 104
Query: 75 LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
LAPF K L+IV+RGVTN+Q DPSVD KA LP+LKQF + EL I +RGM P GG
Sbjct: 105 LAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKILRRGMPPGGG 164
Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
GE+ F+CP+ K +KPVQ D GKIKRIRG +++RVSP +ANRIVD+A+ IL ++PD+Y
Sbjct: 165 GEVLFSCPVRKVLKPVQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNKFIPDIY 224
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTAD-AVSPPPPATRTVPETLGEQLAYNLL 253
+ DH KG SGKSPGFG S+ AE++ G L+A+ A +P +PE LG A LL
Sbjct: 225 IYTDHMKGVSSGKSPGFGLSLVAETTNGTFLSAELASNPQGQGAAVLPEDLGRNCAKLLL 284
Query: 254 EEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
EEI RGG VDS+ QSL L M L Q+DVS++L+GPLSPYT++FLRHLK FF + FK+E
Sbjct: 285 EEIYRGGCVDSTNQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQVMFKVE 342
>sp|Q2KHX8|RCL1_BOVIN RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus
GN=RCL1 PE=2 SV=1
Length = 373
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 166/298 (55%), Positives = 220/298 (73%), Gaps = 1/298 (0%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
++E + +RL+DK+TNG+ +E+N+TGTTL +QPG+L GG ++H+C RGIGYYLE L
Sbjct: 45 RDFEASFIRLLDKVTNGSRIEINQTGTTLYYQPGLLYGGSMEHDCSVLRGIGYYLESLLC 104
Query: 75 LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
LAPF K L+IV+RGVTN+Q DPSVD KA LP+LKQF + EL + +RGM P GG
Sbjct: 105 LAPFMKHPLRIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKVVRRGMPPGGG 164
Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
GE++F+CP+ K +KP+Q D GKIKRIRG +++RVSP +ANRIVD+A+ IL ++PD+Y
Sbjct: 165 GEVFFSCPVRKVLKPIQLIDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNKFIPDIY 224
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTAD-AVSPPPPATRTVPETLGEQLAYNLL 253
+ DH KG SGKSPGFG S+ AE++ G L+A+ A +P +PE LG A LL
Sbjct: 225 IYTDHMKGINSGKSPGFGLSLVAETTNGTFLSAELASNPQGQGAAMLPEDLGRNCARLLL 284
Query: 254 EEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
EEI RGG VDS+ QSL L M L Q+DVS++L+GPLSPYT++FLRHLK FF + FK+E
Sbjct: 285 EEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIE 342
>sp|Q54S38|RCL1_DICDI Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2
Length = 371
Score = 275 bits (703), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 208/331 (62%), Gaps = 13/331 (3%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGT-TLVFQPGILVGGLIQHECCKERGIGYYLEVCL 73
+YE + LRL+DK+TNG+ +E+N TGT I+ G I HEC RGIGY++E +
Sbjct: 39 RDYEASFLRLVDKITNGSKIEINSTGTQITYIPGIIIGGKGITHECGTVRGIGYFVEALI 98
Query: 74 ALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEG 133
L PF K L I + G+TNN D ++D+ + LP++++F ++ G+ + I KRG P G
Sbjct: 99 CLGPFAKAPLDITLNGITNNDIDLTIDTIRTTTLPIIRKF-GIEEGLIIKIIKRGAPPNG 157
Query: 134 GGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDV 193
GG + F CPI+ +K +Q D GKI+RIRG +A R+SP +NR++D AKG+LL Y PDV
Sbjct: 158 GGSVNFKCPIVPHLKAIQLIDEGKIRRIRGIAYATRISPQFSNRVLDKAKGLLLEYTPDV 217
Query: 194 YLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPA-----------TRTVPE 242
Y+S DH KG +SG SPG+G ++ AE++TG L+A+ +S A T PE
Sbjct: 218 YISSDHYKGNESGLSPGYGLTLVAETTTGCCLSAECMSNTGIATTEQQLQKQKSTSETPE 277
Query: 243 TLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQ 302
LGE+ A+ LLEEI GG +DS QSL L+M L +D+S++ +G ++PYT++F+R L+
Sbjct: 278 DLGERTAFALLEEIFNGGCIDSHNQSLALLFMVLCPEDISKVRLGKITPYTIEFIRQLRD 337
Query: 303 FFGLKFKLEHESGMVDSSFQSLGCLYMALHQ 333
FFG+ FK+E + F LG Y + +
Sbjct: 338 FFGVTFKIEPDQNSKTVLFTCLGIGYKNMAR 368
>sp|Q23400|RCL1_CAEEL Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Caenorhabditis elegans GN=ZK1127.5 PE=3 SV=2
Length = 379
Score = 261 bits (668), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 199/299 (66%), Gaps = 2/299 (0%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
++E L+ L++K+TNGT +E++ TGT ++F+PG++ GG++ +C ER I Y+LE L
Sbjct: 43 RDFESKLIGLLEKVTNGTKVEISRTGTQVIFRPGMITGGVVNLDCGTERCISYFLEPLLL 102
Query: 75 LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
L+PFCK + I ++GVTN + SVD KA L V +F++ D +++ I+ RG++PEGG
Sbjct: 103 LSPFCKVPMVIKLKGVTNAPGEISVDGMKASWLKVYNKFVLNDEKLDIKIQARGLKPEGG 162
Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
G + F PI+K+++PV+ + +GK+ +IRG + +V+P++A R++D AK + Y+ DVY
Sbjct: 163 GVVVFTAPIVKTLRPVKRQQVGKVCKIRGQAYVTKVTPSLAYRMIDAAKKAMHGYISDVY 222
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPP--PATRTVPETLGEQLAYNL 252
++VD KG G SPG+G + AE++ GV+ A+A+S P +PE +G + + L
Sbjct: 223 ITVDQRKGDAGGASPGYGLFLTAETTEGVIYQAEAISRPKGESGVPILPEDIGIEAGHAL 282
Query: 253 LEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
L++I GG +DSS Q L +M L KDVS L GPL Y+V LRHLKQFF ++FK+E
Sbjct: 283 LQQIYMGGALDSSAQILASTFMTLCPKDVSHFLYGPLPMYSVHALRHLKQFFEIEFKME 341
>sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1
Length = 375
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 197/307 (64%), Gaps = 12/307 (3%)
Query: 17 YEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGL-IQHECCKERGIGYYLEVCLAL 75
+EVNLLRL++ +T+ +++NETGT L ++PG +VGG + H C R IGYYLE L L
Sbjct: 44 HEVNLLRLLEIVTDDAVVDINETGTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLL 103
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
F KK L I ++G+TN+ +D SVD+F++ L ++K+F V +EL I+ RG+ P GGG
Sbjct: 104 GLFGKKPLSIRLKGITNDPRDASVDTFRSTTLNIIKRFGVPAEDLELKIEARGVAPNGGG 163
Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYL 195
E+ P IK++ V + G +K+IRGT F+ RV+ + + A+GI + LPDV++
Sbjct: 164 EVLLTVPNIKTLSAVHWVEEGMVKKIRGTTFSTRVTSDFEHSMRFAARGIFNNLLPDVHI 223
Query: 196 SVDHCKGPKSGKSPGFGGSIYAESSTGVVLTAD-AVSPPPP----------ATRTVPETL 244
DH G ++GKSPG+G S+ AE++TG ++AD VS P R+ E
Sbjct: 224 FQDHRAGAQAGKSPGYGISLAAETTTGCFISADTTVSCERPDETGELDVEKKERSPAEDT 283
Query: 245 GEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFF 304
G ++A LL+EI +GG+VDS+ Q L L AL ++DVS++ +G LSPY V+ LR++K+F
Sbjct: 284 GVEVASWLLQEIEKGGVVDSTHQGLLFLLCALSEQDVSKVRVGTLSPYAVETLRNIKEFL 343
Query: 305 GLKFKLE 311
G+KF ++
Sbjct: 344 GVKFAIK 350
>sp|Q09870|RCL1_SCHPO Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12G12.06c PE=3 SV=1
Length = 363
Score = 214 bits (546), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 193/323 (59%), Gaps = 10/323 (3%)
Query: 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
+Y+V+ LRL++KLTNG+ +E++ TGT+ +++PG ++GG + H+C +GIGY+LE L L
Sbjct: 45 DYQVSFLRLLEKLTNGSVIEISYTGTSFIYRPGNIIGGRVVHDCPTTKGIGYFLEPILIL 104
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
F K + + GVT++ +D VD + LP L++ V +EL I KRG P GGG
Sbjct: 105 CLFAKTPTSLTLTGVTSSNEDIGVDVLRTSVLPSLQKRFQVGDELELRILKRGSAPGGGG 164
Query: 136 EIYFNCPIIK-SIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
E+ F CP+IK S+ P++ + G++ RIRG + RVSPA ANR+V++A+G+L ++PDV+
Sbjct: 165 EVNFLCPVIKESLPPIRLSEFGRVFRIRGIASSTRVSPAFANRLVESARGVLNPFIPDVF 224
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLE 254
+ D +G + G SPG+ ++ AE++ G A+ PE +G A LLE
Sbjct: 225 IYTDVRRGDECGNSPGYSITLVAETNKGCSYAAEHCG----EAGETPEDVGSFCAKKLLE 280
Query: 255 EISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPL--SPYTVQFLRHLKQFFGLKFKL-E 311
I GG VD Q M L +DV+ +++G L + V FLR +K F +++ E
Sbjct: 281 VIESGGCVDPYTQPSTLTGMLLSSEDVNTIVVGQLGITSQLVVFLRDVKALFNCEYRFKE 340
Query: 312 HESGMVDSSFQSLGCLYMALHQK 334
ESG V+ S LG Y+ ++++
Sbjct: 341 LESGQVEMS--CLGKGYLNVNRR 361
>sp|Q08096|RCL1_YEAST RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RCL1 PE=1
SV=1
Length = 367
Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 178/296 (60%), Gaps = 16/296 (5%)
Query: 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
+YEV+ LRLI+ +TNG+ +E++ TGTT++++PGI+VGG H C + +GY++E L L
Sbjct: 47 DYEVSFLRLIESVTNGSVIEISYTGTTVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYL 106
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
APF KK I+ +G+T + D +++ K G +PV+++F V + + + KRG P GGG
Sbjct: 107 APFSKKKFSILFKGITASHNDAGIEAIKWGLMPVMEKFGVRECALHTL--KRGSPPLGGG 164
Query: 136 EIYFNCPIIKSI--KPVQSKDMGK--IKRIRGTVFALRVSPAIANRIVDTAKGILLSYLP 191
E++ ++ S+ +P+ ++ + I I G ++ RVSP++ NR++D AK +L +
Sbjct: 165 EVHL---VVDSLIAQPITMHEIDRPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQC 221
Query: 192 DVYLSVDHCKGPKSGKSPGFGGSIYAESS-TGVVLTADAVSPPPPATRTVPETLGEQLAY 250
+V ++ D +G SGKSPG+G ++ A+S G A+ + ++PE LGE++A
Sbjct: 222 EVNITADVWRGENSGKSPGWGITLVAQSKQKGWSYFAEDIGD----AGSIPEELGEKVAC 277
Query: 251 NLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGP--LSPYTVQFLRHLKQFF 304
LLEEIS+ V + L +YM + ++D+ +L I + + LR +K+ F
Sbjct: 278 QLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGRLRINKEQIDERFIILLRDIKKIF 333
>sp|Q2HJ88|RTCA_BOVIN RNA 3'-terminal phosphate cyclase OS=Bos taurus GN=RTCA PE=2 SV=1
Length = 366
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 14/303 (4%)
Query: 22 LRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80
L +I L +G LE E G+T + F P + GG+ + + ++V + F
Sbjct: 56 LEMIRDLCDGQ-LEGAEIGSTEITFTPEKIKGGVHTADTKTAGSVCLLMQVSMPCVLFAA 114
Query: 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFN 140
++ ++G TN + P +D P++++F IK RG P+GGGE+
Sbjct: 115 CPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFT---FNCDIKMRGYYPKGGGEVIVR 171
Query: 141 CPIIKSIKPVQSKDMGKIKRIRGTVFALRVSP-AIANRIVDTAKGILLSYLPDVYLSVDH 199
+K + P+ D G + +I G F V P +A + A + + D+Y+++
Sbjct: 172 MSPVKQLSPINLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQP 231
Query: 200 CKGPKSGK-SPGFGGSIYAESSTGVVLTADAVSPPPPATRTV-PETLGEQLAYNLLEEIS 257
+ PK G G I AE+STG + ++ R V + +G + A LL +
Sbjct: 232 VQEPKDQAFGNGNGIIIIAETSTGCLFAGSSL-----GKRGVNADKVGIEAAEMLLANLR 286
Query: 258 RGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMV 317
GG VD Q ++MAL +S++ GP++ +T + +Q KF ++
Sbjct: 287 HGGAVDEYLQDQLIIFMAL-ASGISRIKTGPVTLHTQTAIHFAEQLAKAKFTVKKSEDEE 345
Query: 318 DSS 320
D+S
Sbjct: 346 DAS 348
>sp|Q4R3J0|RTCA_MACFA RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis GN=RTCA
PE=2 SV=1
Length = 366
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 14/303 (4%)
Query: 22 LRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80
L +I L +G LE E G+T + F P + GG+ + + ++V + F
Sbjct: 56 LEMIRDLCDGR-LEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAA 114
Query: 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFN 140
++ ++G TN + P +D P++++F IK RG P+GGGE+
Sbjct: 115 SPSELHLKGGTNAEMAPQIDYTVMVFKPIVEKFGFR---FNCDIKTRGYYPKGGGEVIVR 171
Query: 141 CPIIKSIKPVQSKDMGKIKRIRGTVFALRVSP-AIANRIVDTAKGILLSYLPDVYLSVDH 199
+K + P+ D G + +I G F V P +A + A + + D+Y+++
Sbjct: 172 MSPVKQLNPINLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQP 231
Query: 200 CKGPKSGK-SPGFGGSIYAESSTGVVLTADAVSPPPPATRTV-PETLGEQLAYNLLEEIS 257
+ PK G G I AE+STG + ++ R V + +G + A LL +
Sbjct: 232 VQEPKDQAFGNGNGIIIIAETSTGCLFAGSSL-----GKRGVNADKVGIEAAEMLLANLR 286
Query: 258 RGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMV 317
GG VD Q ++MAL VS++ GP++ +T + +Q KF ++
Sbjct: 287 HGGTVDEYLQDQLIVFMAL-ANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEE 345
Query: 318 DSS 320
D+S
Sbjct: 346 DAS 348
>sp|O00442|RTCA_HUMAN RNA 3'-terminal phosphate cyclase OS=Homo sapiens GN=RTCA PE=1 SV=1
Length = 366
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 14/303 (4%)
Query: 22 LRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80
L +I L +G LE E G+T + F P + GG+ + + ++V + F
Sbjct: 56 LEMIRDLCDGQ-LEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAA 114
Query: 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFN 140
++ ++G TN + P +D P++++F + IK RG P+GGGE+
Sbjct: 115 SPSELHLKGGTNAEMAPQIDYTVMVFKPIVEKFGFI---FNCDIKTRGYYPKGGGEVIVR 171
Query: 141 CPIIKSIKPVQSKDMGKIKRIRGTVFALRVSP-AIANRIVDTAKGILLSYLPDVYLSVDH 199
+K + P+ + G + +I G F V P +A + A + + D+Y+++
Sbjct: 172 MSPVKQLNPINLTERGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQP 231
Query: 200 CKGPKSGK-SPGFGGSIYAESSTGVVLTADAVSPPPPATRTV-PETLGEQLAYNLLEEIS 257
+ PK G G I AE+STG + ++ R V + +G + A LL +
Sbjct: 232 VQEPKDQAFGNGNGIIIIAETSTGCLFAGSSL-----GKRGVNADKVGIEAAEMLLANLR 286
Query: 258 RGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMV 317
GG VD Q ++MAL VS++ GP++ +T + +Q KF ++
Sbjct: 287 HGGTVDEYLQDQLIVFMAL-ANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEE 345
Query: 318 DSS 320
D++
Sbjct: 346 DAA 348
>sp|A3MXQ7|RTCA_PYRCJ RNA 3'-terminal phosphate cyclase OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rtcA PE=3 SV=1
Length = 347
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 20/301 (6%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCL 73
QH VN L LT+ + T LVF+P + G Q + I ++
Sbjct: 47 QHLTGVNAAAL---LTDAELEGAAKGSTRLVFKPKTIKCGGFQIDIGTAGSISLVIQTLT 103
Query: 74 ALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEG 133
+A F +++ + G T+ P +D + PV+ +F +++ + +RG P+G
Sbjct: 104 PIALFAPCPVRLSITGGTDVAWAPPIDYMRFVFAPVVGRF---GGRVKIEVLRRGHYPKG 160
Query: 134 GGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILL--SYLP 191
GG + + +KPV + D GK+ +IRG A+ + +A R A L Y
Sbjct: 161 GGRVEVEVAPVDVLKPVDAVDFGKVLKIRGISHAVNLPAHVAERQARAAAEALAKEGYAA 220
Query: 192 DVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAY 250
D+ V + G PG G ++AES G V+ DA+ R P E +G + A
Sbjct: 221 DISTEVRN-----DGLGPGSGVVLWAESDVGNVVGGDAL-----GERGKPAEAVGREAAE 270
Query: 251 NLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKL 310
LL + G VDS + +YMAL + VS++ L+ + + +++F +KF++
Sbjct: 271 KLLTALKSGASVDSHMADMAVVYMALAE-GVSRITTPELTLHLQTNMYIVERFLPVKFRV 329
Query: 311 E 311
E
Sbjct: 330 E 330
>sp|Q5R7P3|RTCA_PONAB RNA 3'-terminal phosphate cyclase OS=Pongo abelii GN=RTCA PE=2 SV=1
Length = 366
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 134/303 (44%), Gaps = 14/303 (4%)
Query: 22 LRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80
L +I L +G LE E G+T + F P + GG+ + + ++V + F
Sbjct: 56 LEMIRDLCDGQ-LEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAA 114
Query: 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFN 140
++ ++G TN + P +D P++++F V IK RG P+GGGE+
Sbjct: 115 SPSKLHLKGGTNAEMAPQIDYTVMVFKPIVEKFGFV---FNCDIKTRGYYPKGGGEVIVR 171
Query: 141 CPIIKSIKPVQSKDMGKIKRIRGTVFALRVSP-AIANRIVDTAKGILLSYLPDVYLSVDH 199
+K + PV D G + +I G F V P +A + A + + D Y+++
Sbjct: 172 MSPVKQLDPVNLTDRGCVTKIYGRAFVTGVLPFKVAKDMAAAAARCIRKEIRDSYVNIQP 231
Query: 200 CKGPKSGK-SPGFGGSIYAESSTGVVLTADAVSPPPPATRTV-PETLGEQLAYNLLEEIS 257
+ PK G G I AE+STG + ++ R V + +G A LL +
Sbjct: 232 VQEPKDQAFGNGNGIIIIAETSTGCLFAGSSL-----GKRGVNADKVGIGAAEMLLANLR 286
Query: 258 RGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMV 317
GG VD Q ++MAL VS++ GP++ +T + +Q KF ++
Sbjct: 287 HGGTVDEYLQDQLIVFMAL-ANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEE 345
Query: 318 DSS 320
D++
Sbjct: 346 DAA 348
>sp|Q9D7H3|RTCA_MOUSE RNA 3'-terminal phosphate cyclase OS=Mus musculus GN=RtcA PE=2 SV=2
Length = 366
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 127/294 (43%), Gaps = 13/294 (4%)
Query: 31 GTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRG 89
G LE E G+T + F P + GG+ + + ++V + F ++ ++G
Sbjct: 64 GGHLEGAEIGSTEITFTPEKIRGGVHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKG 123
Query: 90 VTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKP 149
TN + P +D P+ ++F IK RG P+GGGE+ +K + P
Sbjct: 124 GTNAEMAPQIDYTMMVFKPIAEKFGFT---FNCDIKTRGYYPKGGGEVIVRVSPVKRLDP 180
Query: 150 VQSKDMGKIKRIRGTVFALRVSP-AIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGK- 207
+ D G + +I G F V P +A + A + + D+Y+S+ + +
Sbjct: 181 INLTDRGSVTKIYGRAFVAGVLPLKVAKDMAAAAVRCIRKEIRDLYVSIQPVQEARDQAF 240
Query: 208 SPGFGGSIYAESSTGVVLTADAVSPPPPATRTV-PETLGEQLAYNLLEEISRGGMVDSSF 266
G G I AE+STG + ++ R V + +G + A LL + GG VD
Sbjct: 241 GNGSGIIIVAETSTGCLFAGSSL-----GKRGVNADKVGIEAAEMLLANLRHGGTVDEYL 295
Query: 267 QSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSS 320
Q ++MAL +S++ G ++ +T + +Q KF ++ D++
Sbjct: 296 QDQLIIFMAL-ANGISRIKTGSVTLHTQTAIHFAEQLAKAKFTVKKSEEEEDAT 348
>sp|A2BN21|RTCA_HYPBU RNA 3'-terminal phosphate cyclase OS=Hyperthermus butylicus (strain
DSM 5456 / JCM 9403) GN=rtcA PE=3 SV=1
Length = 359
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 22/245 (8%)
Query: 41 TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVD 100
TTLVF P L G I L+ L + F +++ + G T+ P +D
Sbjct: 71 TTLVFIPRGLRSGRFYFNIGTAGSITLVLQALLPVTAFAPGPVEVEIVGGTDVPWSPPID 130
Query: 101 SFKAGGLPVLKQFLVV-DPGIELIIKKRGMEPEGGGEIYFNC---PIIKSIKPVQSKDMG 156
+ VL++ L + E+I+K+RG P GGG + P + +KPV+ ++ G
Sbjct: 131 YVRF----VLRKLLAMFGFEFEIIVKRRGHYPRGGGRVVLRVTQPPHV--LKPVKLEERG 184
Query: 157 KIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVD-----HCKGPKSGKSPGF 211
K+ R+ G A+R+ +A R +A+ +L S LP V +S+D + P G PG
Sbjct: 185 KVLRVEGLSHAVRLPRHVAERQARSAEAVLRSKLPGVPISIDLEWYEPSRDPHLG--PGS 242
Query: 212 GGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGC 271
G ++A + V+ + + PA E +G + A LLE+++ G +D +
Sbjct: 243 GVVVWAVAEHSVLGSDSLGAKGKPA-----EAVGREAAEKLLEDLATGTALDRHASDMLI 297
Query: 272 LYMAL 276
Y AL
Sbjct: 298 PYAAL 302
>sp|A8A9W2|RTCA_IGNH4 RNA 3'-terminal phosphate cyclase OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rtcA PE=3 SV=1
Length = 353
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 17/259 (6%)
Query: 25 IDKLTNGTTLEVN--ETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKK 81
+ L T EV E G+T +VF P L G + + + L+ A F
Sbjct: 52 VKALAEMTDAEVRGLELGSTEIVFIPKTLKAGTFRFDIGTAGSVSLVLQAVTPAALFAPG 111
Query: 82 GLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNC 141
+++ +RG T+ P VD + P+L++F EL++K+RG P+GGGE+ F
Sbjct: 112 EVRVQLRGGTDVPMSPPVDYLRFVFYPLLERF---GAKTELVLKRRGHYPKGGGEVEFAS 168
Query: 142 PIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL-LSYLPDVYLSVDHC 200
+ S+ + G++ ++RG +++ +A R A+ +L S L +V + ++
Sbjct: 169 RPVDSLTQWGEVERGEVLKVRGLSHCVKLPKHVAERQAKAAEEVLKKSGLKNVDIDLEWY 228
Query: 201 ---KGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEIS 257
+ P G PG G ++A + +L AD++ A E +GE+ A LLE++S
Sbjct: 229 PPERDPHLG--PGSGIVLWAITERS-LLGADSLG----ARGKRAERVGEEAARKLLEDLS 281
Query: 258 RGGMVDSSFQSLGCLYMAL 276
G +D + Y++L
Sbjct: 282 TGKALDRHMSDMIVPYVSL 300
>sp|Q8ZST4|RTCA_PYRAE RNA 3'-terminal phosphate cyclase OS=Pyrobaculum aerophilum (strain
ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rtcA PE=3 SV=1
Length = 348
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 13/299 (4%)
Query: 28 LTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVM 87
LT+ + T L F+P L G + I ++ + + QI +
Sbjct: 59 LTDAEVKGAEKGSTRLYFEPKTLKCGNFSIDIGTAGSISLIVQTLAPILLYAPCPTQITV 118
Query: 88 RGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSI 147
G T+ P +D + VL++F IELI +RG P GGG +K +
Sbjct: 119 TGGTDVAWAPPIDYMRFVFTKVLERF-GAKLSIELI--RRGHYPRGGGRAVVRAEPVKRL 175
Query: 148 KPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGK 207
K V+S++ G + +I G A+ + P +A R A+ L D ++++ G
Sbjct: 176 KAVESEEFGNVVKISGISHAVNLPPHVAERQAKAAREELSKMGLDADIAIEV---RNDGL 232
Query: 208 SPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGMVDSSF 266
PG G I+A S G V+ D++ R P ET+G++ A L+ + VD
Sbjct: 233 GPGSGVVIWAVSDAGNVIGGDSL-----GERGKPAETVGKEAAQKLIAVLKTRASVDPHM 287
Query: 267 QSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLG 325
+ LYMAL + S++ + + + ++QF +KF ++G + +G
Sbjct: 288 ADMAVLYMALAEGR-SRISTSEETMHLKTNMYIIEQFLRVKFSTMEKAGRYTIEVEGVG 345
>sp|O27937|RTCA_METTH RNA 3'-terminal phosphate cyclase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rtcA PE=3 SV=1
Length = 337
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 146/317 (46%), Gaps = 25/317 (7%)
Query: 4 YDIKVHSNWC--QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECC 60
Y+I+ + H++ + +R + +++NGT L +E G+ L F PG + GG +
Sbjct: 33 YNIRARRSRSGLSHQH-LTAVRAVARISNGT-LRGDELGSMELEFSPGRVTGGTFNFDVK 90
Query: 61 KERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGI 120
G L+ + A + + + + G T+ P+ D + +PVL + + I
Sbjct: 91 TAGSTGLVLQAIMVAAAASEGEIDVTVSGGTDVLWAPTCDYLREVTIPVL-EMMGYSARI 149
Query: 121 ELIIKKRGMEPEGGGEIYFNCPIIK--SIKPVQSKDMGKIKRIRGTVFALRVSPAIANRI 178
E+I +RG PEGGG ++ II+ ++P+ ++ +I +RG + + +A R
Sbjct: 150 EII--RRGYYPEGGGRVH---AIIEPSELRPITLEE-SEIHAVRGISHSRNLPVHVAERQ 203
Query: 179 VDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATR 238
++A IL DV + V+ GP G+ G +++AE +T + AVS P R
Sbjct: 204 AESAMKILRGAGLDVDIMVEDASGP-VGRGSGI--TLWAEGNTRL----GAVSLGKPGKR 256
Query: 239 TVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLR 298
E +G + A LL I G +D YMAL S++ L+ + +
Sbjct: 257 A--EKVGSEAARELLGFIESGSPLDRYMGDQIIPYMALTGD--SRVRTCELTLHAETNII 312
Query: 299 HLKQFFGLKFKLEHESG 315
++ G +F++E E G
Sbjct: 313 LSEKITGRRFRVEGERG 329
>sp|B1YDJ1|RTCA_PYRNV RNA 3'-terminal phosphate cyclase OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rtcA PE=3 SV=1
Length = 347
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 23/291 (7%)
Query: 28 LTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVM 87
LT+ + T L F+P L G + I ++ + + ++V+
Sbjct: 59 LTDAEVEGAAKGSTRLFFKPKALKCGTFNIDIGTAGSISLVVQTLAPILLYAPCPTKLVI 118
Query: 88 RGVTNNQKDPSVDSFKAGGLPVLKQFLV---VDPGIELIIKKRGMEPEGGGEIYFNCPII 144
G T+ P +D + V ++L IEL+ KRG P GGG+
Sbjct: 119 TGGTDVAWAPPIDYMRF----VFARYLTRFGARIAIELV--KRGHYPRGGGKAVVQAEPA 172
Query: 145 KSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL--LSYLPDVYLSVDHCKG 202
++ V S + G+ +I G A+ + P +A R A+ L L Y +V + +
Sbjct: 173 GRLRAVDSVEFGRPAKIAGVSHAVNLPPHVAERQARAAREALAKLGYAAEVEVEARN--- 229
Query: 203 PKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGM 261
G PG G ++AES G V+ DA+ R P E +G + A L + G
Sbjct: 230 --DGLGPGSGVVLWAESDVGNVVGGDALG-----ERGKPAEEVGREAAEKLAAVLKAGAS 282
Query: 262 VDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312
+D + LYMAL Q S+L + + + ++QF +KFKLE
Sbjct: 283 LDPHMADMVVLYMALAQGR-SRLSTTEATMHLQTNIYIVEQFLPVKFKLER 332
>sp|A1RSJ7|RTCA_PYRIL RNA 3'-terminal phosphate cyclase OS=Pyrobaculum islandicum (strain
DSM 4184 / JCM 9189) GN=rtcA PE=3 SV=1
Length = 348
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 17/287 (5%)
Query: 28 LTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVM 87
LT+ + T L F+P L G + I ++ + + ++V+
Sbjct: 59 LTDADIEGAAKGSTRLYFKPKTLKCGTFNIDIGTAGSISLVIQTLAPILLYAPCPTKLVI 118
Query: 88 RGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSI 147
G T+ P +D + + VL F IEL+ +RG P GGG + IK +
Sbjct: 119 TGGTDVAWAPPIDYMRYVFVKVLSLF-GAKIAIELV--RRGHYPRGGGRVIVYVEPIKKL 175
Query: 148 KPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL--LSYLPDVYLSVDHCKGPKS 205
+ V + G++ +I G A+ + +A R AK L L Y+ +V +
Sbjct: 176 RAVHYVEFGRLVKISGISHAVNLPTHVAERQAKAAKETLAKLGYVAEVEVETR-----SD 230
Query: 206 GKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGMVDS 264
G PG G ++AES G V+ DA+ R P E +G + A L + G +D
Sbjct: 231 GLGPGSGIVLWAESDIGNVVGGDAL-----GERGKPAEEVGREAAERLAAVLKTGVSLDP 285
Query: 265 SFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
+ +YMAL + S++ + + + ++QF +KFKLE
Sbjct: 286 HMADMAVVYMALAEGR-SKMSTSEATLHLQTNMYIVEQFLPVKFKLE 331
>sp|O15746|RTCA_DICDI Probable RNA 3'-terminal phosphate cyclase OS=Dictyostelium
discoideum GN=rtca PE=3 SV=1
Length = 433
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 20/260 (7%)
Query: 43 LVFQPG---ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSV 99
L +QP I G+I+ + I ++V L F ++V+ G TN P+
Sbjct: 107 LYYQPTQKTIQDDGVIEADTKTAGSICLMIQVSLPCLIFAPHSTKMVLGGGTNCDFAPAA 166
Query: 100 DSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNC-PIIKSIKPVQSKDMGKI 158
D + LP+ + E+ I KRG P+GGG + P+ + + P+ + G++
Sbjct: 167 DYIQNVFLPIAT---TMGFKCEMSIDKRGFYPKGGGAVTLTTQPLTQPLSPITIVNKGEV 223
Query: 159 KRI--RGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIY 216
RI + + R+SP +A R+ +TAK ++ V + + K G I
Sbjct: 224 NRIVIKSYFTSPRISPLVAERMNNTAKKLIKKDFKKVDVETELIDVSKFSFGDGTFIEIR 283
Query: 217 AESSTGVVLTAD---AVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLY 273
A + G + A A+ P E + E A +LL+++ GG +D Q ++
Sbjct: 284 AYTDQGCIFGATGNGAIGVPA-------EKVAEDAANSLLKDLQDGGCMDEYLQDQLIIF 336
Query: 274 MALHQKDVSQLLIGPLSPYT 293
MAL K SQ+ GP+S +T
Sbjct: 337 MAL-AKGKSQIKTGPISLHT 355
>sp|O77264|RTCA_DROME RNA 3'-terminal phosphate cyclase OS=Drosophila melanogaster
GN=CG4061 PE=2 SV=1
Length = 361
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 13/304 (4%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCL 73
QH + +NLLR +TN + +T+ F P ++ + E I ++ L
Sbjct: 52 QHLHGLNLLR---DITNADVVGNYLLSSTVEFTPRTILDNTYRVETHTAASITLIYQMAL 108
Query: 74 ALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEG 133
+ F + ++++ G TN P V+ + LP LK F V +L +++ G P G
Sbjct: 109 PVLLFAGRPSRLIVSGGTNVDFAPPVEYMQEVLLPNLKHFGV---SFDLKVQRYGFYPRG 165
Query: 134 GGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVF-ALRVSPAIANRIVDTAKGILLSYLPD 192
G + + + + G+IK + G + A R+ IA + TA+ + P
Sbjct: 166 QGRCQLDVQPVTKLNSGKLVAFGRIKSVSGVAYCAGRLPVNIAIDMQQTAQREIHRLWPS 225
Query: 193 VYLSVDHCKGPKSGK-SPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYN 251
S++ K + G G + +++ VVL A A+ R LG + +
Sbjct: 226 QQCSIEPIKHSRQKAFHNGAGILMTVNTTSDVVLGASALGK----KRIDGHVLGSEASCQ 281
Query: 252 LLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
L + + + VD Q +YMAL S + G L+ +T + +Q G+KF +
Sbjct: 282 LGDYMRKQVCVDDYMQDQLIIYMAL-AVGRSTMRTGKLTNHTRTAINVAEQMTGVKFDVA 340
Query: 312 HESG 315
E G
Sbjct: 341 MEPG 344
>sp|Q8TZC9|RTCA_METKA RNA 3'-terminal phosphate cyclase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rtcA PE=3
SV=1
Length = 352
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 41 TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVD 100
T +VF+PG + GG + + + L+ A +++ +RG T+ + P VD
Sbjct: 73 TEIVFEPGKVKGGEYEVDIGTAGSVTLLLQAVKLAAIAADGPVEMEVRGGTDVKWSPPVD 132
Query: 101 SFKAGGLPVLKQFL-VVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIK 159
+ V +L + EL + +RG P GGG + K +KP+++ G+++
Sbjct: 133 YE----INVNAHYLDRLGYRYELEVLRRGHYPRGGGIVRARMEPPKRLKPLEAVKFGELE 188
Query: 160 RIRGTVFALRVSPAIANRIVDTAKGIL---LSYLPDVYLSVDHCKGPKSGKSPGFGGSIY 216
+RG +R+ P +A R A I+ L P++ + + KG PG G ++
Sbjct: 189 SVRGISHCVRLPPHVAERQAKAASEIIERELGIRPEIEIET-YPKGRDPHLGPGSGIVLW 247
Query: 217 AESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNL 252
AE G + ADA+ V EQL L
Sbjct: 248 AEDDQGNRIGADALGEKGKPAEVVGREAAEQLVQRL 283
>sp|Q2Y720|RTCA_NITMU RNA 3'-terminal phosphate cyclase OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=rtcA PE=3 SV=1
Length = 353
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 133/321 (41%), Gaps = 24/321 (7%)
Query: 4 YDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKE 62
Y+I+ SN + ++ + L T + ++F+PG L GG
Sbjct: 33 YNIRAKRSNPGLAPQHLTAVKAVAALCRARTEGMEVKSQEIIFRPGPLRGGEYDFPIGTA 92
Query: 63 RGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIEL 122
+ L+ L +A C + +++ + G T+ + P +D F+ LP++ + IE+
Sbjct: 93 GSVTLVLQAALPVALACGEKVRMNISGGTDVRAAPPLDYFRYVLLPLVYS-MGARAKIEV 151
Query: 123 IIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTA 182
++ RG P GGG++ + ++PV ++ I G V + I +R+ + A
Sbjct: 152 LL--RGYYPRGGGKVVVDVEPCLPLRPVLLNASEGLEGITGFVHISNLPKHIIHRMANGA 209
Query: 183 KGILLSY-LPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTA----DAVSPPPPAT 237
L ++ P V L V FG V+LTA + A
Sbjct: 210 LAELSTFPTPAVGLEV-------------FGKDDAIGEGGAVLLTAHKEHSRLGASAVAE 256
Query: 238 RTVP-ETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQF 296
R VP E LG + L EEI G +D +Y+AL VS L LS +
Sbjct: 257 RGVPAERLGAEAGRCLREEILSGATLDIHAADQVLIYLAL-ASGVSCFLTRELSSHAATT 315
Query: 297 LRHLKQFFGLKFKLEHESGMV 317
+ L+QF ++F++ E+ ++
Sbjct: 316 IWLLEQFLPVRFQVTQEAHLI 336
>sp|Q4JB78|RTCA_SULAC RNA 3'-terminal phosphate cyclase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rtcA PE=3 SV=1
Length = 335
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 21/302 (6%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPG-ILVGGLIQHECCKERGIGYYLEVC 72
QH VN +++ LTN T T L+F PG I G + L+
Sbjct: 47 QHLTAVNAVKI---LTNATVKGDYVGSTELIFSPGDIQEKGDFVFDIGTAGSTTLILQTI 103
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPE 132
L L + L + ++G T+ K PS+D + VL++ + + +ELI KRG PE
Sbjct: 104 LPL--LLNRKLTVTIKGGTDVPKSPSIDYIRLVFSKVLER-IGISFNVELI--KRGHYPE 158
Query: 133 GGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPD 192
GGGEI + + + + G+++ G + IA+R +A+ IL
Sbjct: 159 GGGEIRISN-VRGEPQRFSITEFGQLEGFVGISHVSSLPVHIADRQKSSAEKILRRLKDK 217
Query: 193 VYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNL 252
+ + +D +G S G G + A G++ ADA+ ET+GE+ A L
Sbjct: 218 IDIRLDVREGEIS---KGSGICLSAIGKYGII-GADALGERGKRA----ETVGEEAALKL 269
Query: 253 LEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312
LEE+ DS + LY +L+Q + + L+ +++ + +++F +K +++
Sbjct: 270 LEELKTNAAFDSHMGDMLMLYASLYQGEYTA---SKLTLHSITNEKVIRKFIDIKGEIKG 326
Query: 313 ES 314
S
Sbjct: 327 SS 328
>sp|A3DN24|RTCA_STAMF RNA 3'-terminal phosphate cyclase OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rtcA PE=3 SV=2
Length = 357
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 112 QFLVVDPGIELIIKKRGMEPEGGGEIYFNC-PIIKSIKPVQSKDMGKIKRIRGTVFALRV 170
+F VD IEL +RG P GGG + P++ +KP+ + GK+ I G A+R+
Sbjct: 143 RFFGVDVEIELY--RRGHYPRGGGRVVLKVKPLLGKMKPINIVERGKLISIYGISHAVRL 200
Query: 171 SPAIANRIVDTAKGILLSYL---PDVYL-SVDHCKGPKSGKSPGFGGSIYAESSTGVVLT 226
+A R +A ++ L P++ + S + P G PG G +YA+ G L
Sbjct: 201 PRHVAERQARSAATVIREKLGVEPNILIESYPPGRDPHLG--PGSGIVLYADVEAGTRLG 258
Query: 227 ADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMAL 276
DA+ A E +G + A L++E+S G DS + YM L
Sbjct: 259 GDALG----ARGKRAEIVGREAAEKLIDELSSGMAFDSHMGDMLIPYMFL 304
>sp|A8MAV7|RTCA_CALMQ RNA 3'-terminal phosphate cyclase OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=rtcA PE=3 SV=1
Length = 354
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 15/242 (6%)
Query: 42 TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKG-LQIVMRGVTNNQKDPSVD 100
+L F+PG + G + I L+ L + G + + + G T+ K P +D
Sbjct: 72 SLTFEPGDVKCGDYSIDIGTAGSISLVLQTLLPVLAVVNCGEVTLDITGGTDVPKAPPID 131
Query: 101 SFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160
+ + ++ GI++ + +RG P GGG++ +KP+ ++G++K
Sbjct: 132 YVR---FVLAHNLSLMGVGIKVELIRRGHYPRGGGKVKVTVKPAGRLKPINITELGELKG 188
Query: 161 IRGTVFALRVSPAIANRIVDTAKGIL--LSYLPDVYLS-VDHCKGPKSGKSPGFGGSIYA 217
I G A+R+ +A R A+ L L P + L + K P G PG G +++A
Sbjct: 189 IWGLSHAVRLPSHVAVRQAKAAEDYLSKLGLKPSISLEYYEQGKDPHLG--PGSGITLWA 246
Query: 218 ESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMAL 276
ES+ G + AD++ R P E +G + A L I+ G D + ++AL
Sbjct: 247 ESTNGQRIGADSL-----GERGKPAEDVGREAAEALAAVINAGAAFDDHMGDMLIPFLAL 301
Query: 277 HQ 278
+
Sbjct: 302 AE 303
>sp|Q8PXC4|RTCA_METMA RNA 3'-terminal phosphate cyclase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rtcA PE=3 SV=1
Length = 352
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 38/304 (12%)
Query: 36 VNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQK 95
+++ + L F P + GG + I L+ + PF ++ +++ +RG T+
Sbjct: 66 LSQGSSELFFAPVEIKGGKYNIDIGTAGSITLLLQCIMPALPFVEEKVELTIRGGTDVAW 125
Query: 96 DPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIY----------FNCPIIK 145
P++D K L L+QF + +K+RG P GGG + F+ +
Sbjct: 126 SPTIDYLKHVTLRALEQFGYAGS---VTLKERGYYPRGGGSVSAVFEPCKLHGFHFRKTE 182
Query: 146 SIKPVQSKDMGK--------IKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSV 197
K +S +G+ ++ I G A + + R ++A+ + L D + V
Sbjct: 183 GNKKTESNPVGEGLKGEKSMMEEIIGVSHASNLPAHVPARQAESARSLFLEAGYDARIDV 242
Query: 198 DHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEI 256
S + + +G+ L + +P E +G Q A +++E+
Sbjct: 243 SS--------------SEFFSTGSGITLWKGYCGGSALGKKGLPAEKVGRQAAEEVIKEL 288
Query: 257 SRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGM 316
G VD YMAL S + L+ + + +QF +KFK++ + G+
Sbjct: 289 RAGAAVDIHLADQLIPYMALAGN--SSFTVRELTLHAATNIWVTEQFLDVKFKIKEKEGL 346
Query: 317 VDSS 320
+ S
Sbjct: 347 FEVS 350
>sp|C6A4N4|RTCA_THESM RNA 3'-terminal phosphate cyclase OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=rtcA PE=3 SV=1
Length = 350
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 16/255 (6%)
Query: 65 IGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELII 124
I L+ L F ++ + + G T+ P VD K L L++ + +E+ I
Sbjct: 95 ISLVLQALLPAMVFAEEEVTFEITGGTDVAWSPPVDYLKHITLYALEKLGI---KVEIEI 151
Query: 125 KKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKG 184
++RG P GGG + + +P+ ++ KI G A+R+ +A R AK
Sbjct: 152 RRRGHYPRGGGFVIGKVYPWGTKRPLVARTFDKIYSFEGISHAVRLPSHVAIRQAKAAKE 211
Query: 185 ILLSYLPDVYLSVDHCKGPKSGKSPGFG---GSIYAESSTGVVLTADAVSPPPPATRTVP 241
L P + + + H + + GK P FG G + ++ + L DA+ R P
Sbjct: 212 ALERVYPSIPIKI-HEEYYEQGKDPHFGPGSGIVIWANTDVLRLGGDAL-----GERGKP 265
Query: 242 -ETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHL 300
E +G + A L+E++ VD ++ D+ + ++ + + + +
Sbjct: 266 AEIVGREAAKALIEQLGPRHAVDKFLGDQLIPFLTFAGGDI---WVSEVTKHLITNVWVV 322
Query: 301 KQFFGLKFKLEHESG 315
+QFFG F++E E G
Sbjct: 323 EQFFGRVFEMEGEIG 337
>sp|Q974U1|RTCA_SULTO RNA 3'-terminal phosphate cyclase OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rtcA PE=3
SV=1
Length = 339
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 24/259 (9%)
Query: 25 IDKLTNGTTLEVNETGTTLVFQP-GILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGL 83
+ KLTN T LVF+P I+ G + + + L+ L L + +
Sbjct: 55 VKKLTNAKVKGDFVGSTELVFEPEDIVEKGDFEFDVGTAGSVTLILQTILPL--LINRNI 112
Query: 84 QIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPI 143
++ ++G T+ K PS+D + L +L++ + + LI+ +RG PEGGGEI
Sbjct: 113 KVTIKGGTDVPKSPSIDYIRLTFLSLLEK---IGIRVNLILIRRGHYPEGGGEIK----- 164
Query: 144 IKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLP-DVYLSVD 198
I +K S + G++ I+G + IA R +AK LLS + V + +D
Sbjct: 165 ITEVKGNPSSFSLMERGELLMIKGISHVSSLPSHIAERQAKSAKEFLLSKIKIPVEIEID 224
Query: 199 HCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISR 258
+ +S K G + E + L +D++ E +GE+ A ++ EEI
Sbjct: 225 VRENERS-KGSGIALTAIFEKT---FLGSDSLGEKGKRA----EIVGEEAAKSIYEEIIS 276
Query: 259 GGMVDSSFQSLGCLYMALH 277
VD + LY +L+
Sbjct: 277 NATVDRHMSDMLMLYASLY 295
>sp|Q12V70|RTCA_METBU RNA 3'-terminal phosphate cyclase OS=Methanococcoides burtonii
(strain DSM 6242) GN=rtcA PE=3 SV=1
Length = 331
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 113/283 (39%), Gaps = 23/283 (8%)
Query: 41 TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVD 100
T + F P + GG + I L+ + +A + +++ ++G T+ PS+D
Sbjct: 71 TNIAFFPQEIRGGKYTIDIGTAGSIALLLQCIMPIATYSNTNIKLEIKGGTDVSWAPSID 130
Query: 101 SFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160
K L L + + I KRG P GGG + II+ V + +
Sbjct: 131 YLKNVTLSALSKMGYR---CNIDILKRGYYPRGGGIVN---AIIEPSHLVPDRFSEERGT 184
Query: 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESS 220
IRG + +A R D AK IL + + S++ C+ + + +
Sbjct: 185 IRGISHCSNLPEHVAQRQADKAKAILENAGHEC--SIETCR------------TDFTSTG 230
Query: 221 TGVVLTADAVSPPPPATR-TVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQK 279
+G+ L P R T E +G A +LL+E+ VD Y+ L +
Sbjct: 231 SGITLYCGMKGSFVPGKRGTTAEKVGNDAATSLLDELLTPSSVDIHLADQLIPYLGLAEG 290
Query: 280 DVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQ 322
+ +SP+T + ++F +KFK+E + +V S Q
Sbjct: 291 --GSFTVKEISPHTKTNIWVTEKFLDVKFKIEKRNDIVKISIQ 331
>sp|Q60335|RTCA_METJA RNA 3'-terminal phosphate cyclase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rtcA PE=3 SV=1
Length = 338
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 15/236 (6%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCL 73
QH V+ ++ + KL N +N L F P L + I ++ L
Sbjct: 49 QH---VSAVKAVKKLCNAEVFGLNVGSEELTFIPSKLSPKDFTIDIGTAGSISLVIQTLL 105
Query: 74 ALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEG 133
L+ K + ++G T+ ++ P +D K L +L+ F V+ EL + KRG PEG
Sbjct: 106 PLSLGINKKFTVKIKGGTDVKRAPPIDYVKNVTLKILRNFGVLT---ELKVLKRGFYPEG 162
Query: 134 GGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL--LSYLP 191
GGE+ F K IK + K + G + + +IA R+ A +L LP
Sbjct: 163 GGEVIFEVKPSK-IKKFDLIEHSKSNLVEGISYVQNLDESIARRMRKKAVDLLNKEKLLP 221
Query: 192 DVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQ 247
++ + C G S G G ++ ++ G L + A R V E L E+
Sbjct: 222 NIKI---EC---SKGISTGAGIVLWNDTLGGSCLGEKGLRAEIVAERAVNELLKER 271
>sp|Q97W04|RTCA_SULSO RNA 3'-terminal phosphate cyclase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rtcA
PE=3 SV=2
Length = 337
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 135/302 (44%), Gaps = 29/302 (9%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVC 72
QH + V +++I +N T + +E G+ L F P + G I G L +
Sbjct: 47 QHLWAVRAMKMI---SNAET-KGDEVGSKELTFIPHEIKGNSIIDIDIGTAG-SVTLIMQ 101
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPE 132
+ K ++I ++G T+ K P++D + L +L++ + ++ + LI KRG PE
Sbjct: 102 TMIPAIINKNMRIKIKGGTDVPKSPTIDYIRLVYLEILRK-IGIESKVNLI--KRGHYPE 158
Query: 133 GGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLS 188
GGGE+ II+++ S ++GK+ I+G + IA R D+AK IL
Sbjct: 159 GGGEV-----IIENVNGNPSDFSLLELGKLIMIKGISHVSSLPSHIAERQKDSAKAILSK 213
Query: 189 YLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQL 248
+ + D +G S K G + E S ++ AD++ E +GE+
Sbjct: 214 LGVQIEIETDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVGEEA 265
Query: 249 AYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKF 308
A L++ ++ VD + ++ +L + + L+ + + +++F +K
Sbjct: 266 ARKLIDNLNTKAAVDVHMSDMLMIFTSLFG---GEYIGAELTSHAYTNMEIIRKFLDVKI 322
Query: 309 KL 310
++
Sbjct: 323 EI 324
>sp|Q8Y2V6|RTCA_RALSO RNA 3'-terminal phosphate cyclase OS=Ralstonia solanacearum (strain
GMI1000) GN=rtcA PE=3 SV=1
Length = 347
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 9/170 (5%)
Query: 30 NGTTLEVNETGT-TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMR 88
+G T+E E G+ L F PG + GG + L+ L F + +
Sbjct: 68 SGATVEGAEAGSQALAFAPGPIHGGDYRFAIGTAGSCTLVLQTVLPALWFADAPSTVAVS 127
Query: 89 GVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFN-CPIIKSI 147
G T+N+ P VD P+L + V L +K+ G P GGGE+ P +
Sbjct: 128 GGTHNRAAPPVDFLIRAWQPLLARMGVTQ---TLALKRHGFYPAGGGEVLATVTPCAGRL 184
Query: 148 KPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSV 197
+ + G ++ + G V P +A R ++ L + +P V SV
Sbjct: 185 GALHLTERGALRELSGQGIVANVRPGVARRELEA----LAARVPGVVGSV 230
>sp|B1L6E9|RTCA_KORCO RNA 3'-terminal phosphate cyclase OS=Korarchaeum cryptofilum
(strain OPF8) GN=rtcA PE=3 SV=1
Length = 348
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 132/307 (42%), Gaps = 16/307 (5%)
Query: 4 YDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCK 61
Y+I+V +N +N +R + ++T T+E +E G+T L F P GG + +
Sbjct: 35 YNIRVKRANPGLRPQHLNAVRALARITE-ATVEGDEVGSTALRFIPRKRAGGSFEIDIGT 93
Query: 62 ERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE 121
I ++ L ++ + + +RG T+ P +D L+ + E
Sbjct: 94 AGSISLIIQAILPACISSEEEISLRIRGGTDVPLAPPIDYMAE---VFLRNMAPLGVRAE 150
Query: 122 LIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDT 181
L + +RG P GGG + + K + P+ K R+ G A+++ ++ RI +
Sbjct: 151 LKLLRRGHYPRGGGIVELHASPSK-LFPIDKVRGEKFDRVLGRCHAVKLPRSVVERISSS 209
Query: 182 AKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP 241
A L V + + + G PG G ++ +S+ + AD + +
Sbjct: 210 AIDTLRKEGLRVEIEEEWSEDGHLG--PGAGIVLWTDSNPRI--GADELGEKGKPS---- 261
Query: 242 ETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLK 301
E +G+ A LL+EI G DS + Y+AL + S++ I L+ + + ++
Sbjct: 262 EVVGKNAASKLLDEIKAGMAFDSHMGDMIIPYLAL-ARGRSRVGISKLTLHAESNIWLVE 320
Query: 302 QFFGLKF 308
+F +KF
Sbjct: 321 RFLPVKF 327
>sp|C3MU91|RTCA_SULIM RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rtcA PE=3 SV=1
Length = 337
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 136/304 (44%), Gaps = 33/304 (10%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVC 72
QH + V +++I +N T + +E G+ L+F P + G + G L +
Sbjct: 47 QHLWAVKAMKMI---SNAET-KGDEVGSKELIFVPHEIKGNINIDIDVGTAG-SVTLIIQ 101
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE--LIIKKRGME 130
L K ++I ++G T+ K P++D + L +L++ GIE L + KRG
Sbjct: 102 TVLPAIINKNVRIRIKGGTDVPKSPTIDYIRLVYLEILRKI-----GIEAKLNLIKRGHY 156
Query: 131 PEGGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL 186
PEGGGE+ II+++ S ++GK+ I+G + IA R +++A+ +L
Sbjct: 157 PEGGGEV-----IIENVNGNPSAFSLLELGKLTIIKGISHVSSLPAHIAERQMNSARELL 211
Query: 187 LSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGE 246
+ + D +G S K G + E S ++ AD++ E +GE
Sbjct: 212 SKLGVPIEIQTDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVGE 263
Query: 247 QLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGL 306
+ A L++ ++ VD + ++ +L+ + + L+ + + +K+F +
Sbjct: 264 EAARILIDNLNTKASVDIHMSDMLMIFASLYG---GEYIGAELTSHAYTNMEIIKKFLDI 320
Query: 307 KFKL 310
K +
Sbjct: 321 KIDV 324
>sp|C3N179|RTCA_SULIA RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
M.16.27) GN=rtcA PE=3 SV=1
Length = 337
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 136/304 (44%), Gaps = 33/304 (10%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVC 72
QH + V +++I +N T + +E G+ L+F P + G + G L +
Sbjct: 47 QHLWAVKAMKMI---SNAET-KGDEVGSKELIFVPHEIKGNINIDIDVGTAG-SVTLIIQ 101
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE--LIIKKRGME 130
L K ++I ++G T+ K P++D + L +L++ GIE L + KRG
Sbjct: 102 TVLPAIINKNVRIRIKGGTDVPKSPTIDYIRLVYLEILRKI-----GIEAKLNLIKRGHY 156
Query: 131 PEGGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL 186
PEGGGE+ II+++ S ++GK+ I+G + IA R +++A+ +L
Sbjct: 157 PEGGGEV-----IIENVNGNPSAFSLLELGKLTIIKGISHVSSLPAHIAERQMNSARELL 211
Query: 187 LSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGE 246
+ + D +G S K G + E S ++ AD++ E +GE
Sbjct: 212 SKLGVPIEIQTDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVGE 263
Query: 247 QLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGL 306
+ A L++ ++ VD + ++ +L+ + + L+ + + +K+F +
Sbjct: 264 EAARILIDNLNTKASVDIHMSDMLMIFASLYG---GEYIGAELTSHAYTNMEIIKKFLDI 320
Query: 307 KFKL 310
K +
Sbjct: 321 KIDV 324
>sp|C3NMT8|RTCA_SULIN RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rtcA PE=3 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 136/305 (44%), Gaps = 35/305 (11%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGL-IQHECCKERGIGYYLEV 71
QH + V +++I +N T + +E G+ L+F P + G I + + ++
Sbjct: 47 QHLWAVKAMKMI---SNAET-KGDEVGSKELIFVPHEIKGNTNIDMDVGTAGSVTLIIQT 102
Query: 72 CLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE--LIIKKRGM 129
L K ++I ++G T+ K P++D + L +L++ GIE L + KRG
Sbjct: 103 VLP--AIINKNVRIRIKGGTDVPKSPTIDYIRLVYLEILRKI-----GIEAKLNLIKRGH 155
Query: 130 EPEGGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGI 185
PEGGGE+ II+++ S ++GK+ I+G + IA R +++A+ I
Sbjct: 156 YPEGGGEV-----IIENVNGNPSAFSLLELGKLTIIKGISHVSSLPAHIAERQMNSAREI 210
Query: 186 LLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLG 245
L + + D +G S K G + E S ++ AD++ E +G
Sbjct: 211 LSKLGVPIEIETDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVG 262
Query: 246 EQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFG 305
E+ A L+ ++ VD + ++ +L+ + + L+ + + +K+F
Sbjct: 263 EEAARILINNLNTKASVDIHMSDMLMIFASLYG---GEYIGAELTSHAYTNMEIIKKFLD 319
Query: 306 LKFKL 310
+K +
Sbjct: 320 IKIDV 324
>sp|C4KKE6|RTCA_SULIK RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rtcA PE=3 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 33/304 (10%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVC 72
QH + V +++I +N T + +E G+ L+F P + G G L +
Sbjct: 47 QHLWAVKAMKMI---SNAET-KGDEVGSKELIFVPHEIKGNTNIDIDVGTAG-SVTLIIQ 101
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE--LIIKKRGME 130
L K ++I ++G T+ K P++D + L +L++ GIE L + KRG
Sbjct: 102 TVLPAIINKNVRIRIKGGTDVPKSPTIDYIRLVYLEILRKI-----GIEAKLNLIKRGHY 156
Query: 131 PEGGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL 186
PEGGGE+ II+++ S ++GK+ I+G + IA R +++A+ IL
Sbjct: 157 PEGGGEV-----IIENVNGNPSAFSLLELGKLTIIKGISHVSSLPAHIAERQMNSAREIL 211
Query: 187 LSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGE 246
+ + D +G S K G + E S ++ AD++ E +GE
Sbjct: 212 SKLGVPIEIQTDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVGE 263
Query: 247 QLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGL 306
+ A L++ ++ VD + ++ +L+ + + L+ + + +K+F +
Sbjct: 264 EAARILIDNLNTKASVDIHMSDMLMIFASLYG---GEYIGAELTSHAYTNMEIIKKFLDI 320
Query: 307 KFKL 310
K +
Sbjct: 321 KIDV 324
>sp|C3N969|RTCA_SULIY RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rtcA PE=3 SV=1
Length = 337
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 136/305 (44%), Gaps = 35/305 (11%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGL-IQHECCKERGIGYYLEV 71
QH + V +++I +N T + +E G+ L+F P + G I + + ++
Sbjct: 47 QHLWAVKAMKMI---SNAET-KGDEVGSKELIFVPHEIKGNTNIDIDVGTAGSVTLIIQT 102
Query: 72 CLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE--LIIKKRGM 129
L K ++I ++G T+ K P++D + L +L++ GIE L + KRG
Sbjct: 103 VLP--AIINKNVRIRIKGGTDVPKSPTIDYIRLVYLEILRKI-----GIEAKLNLIKRGH 155
Query: 130 EPEGGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGI 185
PEGGGE+ II+++ S ++GK+ I+G + IA R +++A+ I
Sbjct: 156 YPEGGGEV-----IIENVNGNPSAFSLLELGKLTIIKGISHVSSLPAHIAERQMNSAREI 210
Query: 186 LLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLG 245
L + + D +G S K G + E S ++ AD++ E +G
Sbjct: 211 LSKLGVPIEIETDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVG 262
Query: 246 EQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFG 305
E+ A L+ ++ VD + ++ +L+ + + L+ + + +K+F
Sbjct: 263 EEAARILINNLNTKASVDIHMSDMLMIFASLYG---GEYIGAELTSHAYTNMEIIKKFLD 319
Query: 306 LKFKL 310
+K +
Sbjct: 320 IKIDV 324
>sp|C3MKC1|RTCA_SULIL RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rtcA PE=3 SV=1
Length = 337
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 136/305 (44%), Gaps = 35/305 (11%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETGTT-LVFQPGILVGGL-IQHECCKERGIGYYLEV 71
QH + V +++I +N T + +E G+ L+F P + G I + + ++
Sbjct: 47 QHLWAVKAMKMI---SNAET-KGDEVGSKELIFVPHEIKGNTNIDIDVGTAGSVTLIIQT 102
Query: 72 CLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIE--LIIKKRGM 129
L K ++I ++G T+ K P++D + L +L++ GIE L + KRG
Sbjct: 103 VLP--AIINKNVRIRIKGGTDVPKSPTIDYIRLVYLEILRKI-----GIEAKLNLIKRGH 155
Query: 130 EPEGGGEIYFNCPIIKSIKPVQSK----DMGKIKRIRGTVFALRVSPAIANRIVDTAKGI 185
PEGGGE+ II+++ S ++GK+ I+G + IA R +++A+ I
Sbjct: 156 YPEGGGEV-----IIENVNGNPSAFSLLELGKLTIIKGISHVSSLPAHIAERQMNSAREI 210
Query: 186 LLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLG 245
L + + D +G S K G + E S ++ AD++ E +G
Sbjct: 211 LSKLGVPIEIETDVRQGEVS-KGSGIALAAIGEKS---IIGADSLGERGKRA----EIVG 262
Query: 246 EQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFG 305
E+ A L+ ++ VD + ++ +L+ + + L+ + + +K+F
Sbjct: 263 EEAARILINNLNTKASVDIHMSDMLMIFASLYG---GEYIGAELTSHAYTNMEIIKKFLD 319
Query: 306 LKFKL 310
+K +
Sbjct: 320 IKIDV 324
>sp|Q46DV9|RTCA_METBF RNA 3'-terminal phosphate cyclase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=rtcA PE=3 SV=1
Length = 331
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 41 TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVD 100
T + F P + GG + I L+ + PF K+ +++ ++G T+ P++D
Sbjct: 71 TEISFVPVEIEGGKYDIDIGTAGSITLLLQCIMPALPFAKEKVELTIKGGTDVAWSPTID 130
Query: 101 SFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEI--YFNCPIIKSIKPVQSKDMGKI 158
+ L+Q + +K+ G P+GGG++ YF ++ ++ K+
Sbjct: 131 YLQHVTFRALEQLGYSG---SITLKEHGYYPKGGGKVSAYFKPCRLREFHFLKEKE---- 183
Query: 159 KRIRGTVFA--------LRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPG 210
I+G+ A LR + A + R+++ L+ S+
Sbjct: 184 -DIKGSSHASNLPAHVPLRQAEAASKRLMEAGYPSLIETQSFEAFSI------------- 229
Query: 211 FGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGMVDSSFQSL 269
+G+ L + R +P E +G+ A ++ E+ G VD+
Sbjct: 230 ---------GSGITLWIGYIGGSALGERGLPAEKVGKNAADEIIPELRSGASVDTHLADQ 280
Query: 270 GCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSS 320
YMAL S + LS +T + +QF +KF++E + G+ + S
Sbjct: 281 LIPYMALAGN--SSYTVRELSLHTTTNIWVTEQFLDVKFRIEKKEGLFEVS 329
>sp|Q8TH85|RTCA_METAC RNA 3'-terminal phosphate cyclase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rtcA
PE=3 SV=1
Length = 355
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 122/308 (39%), Gaps = 53/308 (17%)
Query: 41 TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVD 100
+ L F P + GG + + I L+ + PF K+ +++ ++G T+ P++D
Sbjct: 71 SELFFSPVEIKGGKYEVDIGTAGSITLLLQSLMPALPFAKEKVKLTIKGGTDVAWSPTID 130
Query: 101 SFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEI--YFNCPIIKSI---KPVQSKDM 155
+ L L+Q GI + +KKRG P GGGE+ F ++S + +++
Sbjct: 131 YLQHVTLRALEQLGYA--GI-VTLKKRGYYPRGGGEVSAVFEPCKLRSFHFRRVKENRRT 187
Query: 156 GKIKR----------------IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDH 199
G+ +R I+G A + + R + A+ +LL
Sbjct: 188 GEARREEETRNEGRNQNQRIEIQGISHASNLPAHVPARQAEAAESLLL------------ 235
Query: 200 CKGPKSGKSPGFGGSIYAES------STGVVLTADAVSPPPPATRTVP-ETLGEQLAYNL 252
G+G +S +G+ L + + +P E +G + A +
Sbjct: 236 --------EAGYGSRTKIQSFELLSTGSGITLWSGYCGGSALGKKGLPAEKVGRRAAEEI 287
Query: 253 LEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312
+ E+S VD YMAL S + L+ + + +QF +KF++E
Sbjct: 288 ILELSSKAPVDVHLADQLIPYMALAGN--SSYTVRELTLHAATNIWVTEQFLDVKFRIEE 345
Query: 313 ESGMVDSS 320
+ G+ + S
Sbjct: 346 KEGLFEVS 353
>sp|Q5JIQ0|RTCA_PYRKO RNA 3'-terminal phosphate cyclase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rtcA PE=3
SV=1
Length = 343
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 118/293 (40%), Gaps = 20/293 (6%)
Query: 25 IDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQ 84
+ +L+N + T L F PG ++ I L+ L F +
Sbjct: 57 LKELSNAKIKGASVGSTELEFIPGKAEPKHVRVPIKTAGSITLVLQALLPAMAFIGGSFE 116
Query: 85 IVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPII 144
I G T+ P VD K L L++ + +EL IK+RG P GGG +
Sbjct: 117 IT--GGTDVPWSPPVDYLKHVTLYALEKMGI---KVELEIKRRGHYPRGGGLVVGRIEPW 171
Query: 145 KSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPK 204
+ KP+++ +I+ G A + +A R A+ L +VY + +
Sbjct: 172 EEKKPLKALKWERIEWFAGISHATNLPAHVAERQAKAAR----ERLSEVYSAPVEIETEV 227
Query: 205 SGK-SPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGMV 262
S PG G ++AE+ + L DA+ R P E +G + A L+E + G
Sbjct: 228 SRSLGPGSGIVVWAETDK-LRLGGDAL-----GKRGKPAEVVGREAADELIEALKTGMAA 281
Query: 263 DSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
D ++A +V + ++ + V + +++FFG F++E E G
Sbjct: 282 DRFLGDQLIPFLAFAGGEVG---VSEITNHLVTNVWVVEKFFGNVFEVEGEVG 331
>sp|A4YEC3|RTCA_METS5 RNA 3'-terminal phosphate cyclase OS=Metallosphaera sedula (strain
ATCC 51363 / DSM 5348) GN=rtcA PE=3 SV=1
Length = 334
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 122/301 (40%), Gaps = 35/301 (11%)
Query: 22 LRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKK 81
+R++ LTN T L F+PG +V G + + L A+ +
Sbjct: 52 VRVMKMLTNARVSGDYLGSTELEFEPGEVVEGSFTVDVGTAGSV--SLIAMTAIPLMINR 109
Query: 82 GLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEI---- 137
+ + +RG T+ P VD + +P+L++ + ++ +K+RG PEGGGE+
Sbjct: 110 RISLRIRGGTDVPLSPPVDYMRLVFIPLLEKMGITG---KIEVKRRGHYPEGGGEVEVYG 166
Query: 138 YFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSV 197
+ P + + G+++ I G + IA R + +L + +V + V
Sbjct: 167 FRGEP-----RDLVLDSFGELREITGVSHVTSLPAHIAKRQIQGVMEVLREF--NVPVKV 219
Query: 198 DHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPAT----RTVPETLGEQLAYNLL 253
+ S TG+VL+A +S ++ E +G + LL
Sbjct: 220 EEEV------------SNEGSRGTGIVLSAHGLSIMGASSLGEKGITAENVGRKAGTELL 267
Query: 254 EEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHE 313
+E+ G VDS + + A + + L L+ +T + +++F + K+E
Sbjct: 268 KELKTGAAVDSHMGDMLVTFSAFANLEYTGSL---LTQHTETNIEVIRKFLEIDVKIEGR 324
Query: 314 S 314
S
Sbjct: 325 S 325
>sp|B6YSJ5|RTCA_THEON RNA 3'-terminal phosphate cyclase OS=Thermococcus onnurineus
(strain NA1) GN=rtcA PE=3 SV=1
Length = 340
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 25/294 (8%)
Query: 27 KLTNGTTLEVNETGTTLV-FQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQI 85
K +G ++ + G+T++ F PG I+ + L+ L F +I
Sbjct: 58 KELSGAKVKGAQVGSTVLEFYPGRARPRHIRVPIKTAGSVTLVLQALLPAMAFIGGSFEI 117
Query: 86 VMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIK 145
G T+ P VD + L L++ + E+ IK+RG P+GGG + +
Sbjct: 118 T--GGTDVPWSPPVDYLRHVTLFALEKMGLRA---EIEIKRRGHYPKGGGLVVGRVEPWE 172
Query: 146 SIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSY--LP-DVYLSVDHCKG 202
KP+ + + I+ G A + +A+R A+ L + +P ++Y V G
Sbjct: 173 ERKPLVALEWRHIELFGGISHATNLPEHVASRQAKAARERLSEFYDVPINIYEEVSRSLG 232
Query: 203 PKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGGM 261
P SG ++AE+ + L DA+ R P E +G + A LLE+++
Sbjct: 233 PGSGI------VVWAETDV-LRLGGDAL-----GKRGKPAEAVGREAADELLEQLTSRAA 280
Query: 262 VDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
VD ++A ++ + ++ + V + ++QF G F++E E G
Sbjct: 281 VDRFLGDQLVPFLAFAGGEIK---VAEITNHLVTNVWVVEQFLGKIFEVEGEVG 331
>sp|C5A2A3|RTCA_THEGJ RNA 3'-terminal phosphate cyclase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rtcA PE=3 SV=1
Length = 344
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 120/295 (40%), Gaps = 24/295 (8%)
Query: 25 IDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQ 84
+ +L+N T L F PG ++ I L+ L F +
Sbjct: 57 LKELSNARVKGAKVGSTVLEFVPGRAEPKHVKVPIKTAGSITLVLQALLPAMAFIGGSFE 116
Query: 85 IVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPII 144
I G T+ P VD + L L++ + E+ +K+RG P+GGG + +
Sbjct: 117 IT--GGTDVPWSPPVDYLRNVTLFALEKMGLR---AEIELKRRGHYPKGGGLVTGSVEPW 171
Query: 145 KSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLP---DVYLSVDHCK 201
+S KP+ + + K+ G A + +A R +A+ L + ++ V
Sbjct: 172 ESKKPLVALEWNKVDSFAGISHATNLPAHVAERQAKSAEERLREFFNAPVEIETEVSRSL 231
Query: 202 GPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGG 260
GP SG ++AE+ + + L DA+ R P E +G + A L+E+++
Sbjct: 232 GPGSGI------VVWAETDS-LRLAGDAL-----GKRGKPAEVVGREAAEELIEQLTPRK 279
Query: 261 MVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
VD ++A ++ + ++ + V + +++F G F++E E G
Sbjct: 280 AVDRFLGDQLIPFLAFAGGEIG---VAEITNHLVTNVWVVERFLGRTFEVEGEIG 331
>sp|B7M2I0|RTCA_ECO8A RNA 3'-terminal phosphate cyclase OS=Escherichia coli O8 (strain
IAI1) GN=rtcA PE=3 SV=1
Length = 338
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 4/154 (2%)
Query: 32 TTLEVNETGT-TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGV 90
T+E E G+ LVF+PG + GG + L+ L F ++ + G
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGEYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 91 TNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPV 150
T+N P D + P+L + + + + + G P GGG + + S +
Sbjct: 124 TDNPSAPPADFIRRVLEPLLAKIGIHQ---QTTLLRHGFYPAGGGVVATEVSPVASFNTL 180
Query: 151 QSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKG 184
Q + G I ++RG V VS +A R + T G
Sbjct: 181 QLGERGNIVQMRGEVLLAGVSRHVAEREIATLAG 214
>sp|B7LSC2|RTCA_ESCF3 RNA 3'-terminal phosphate cyclase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rtcA PE=3 SV=1
Length = 338
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
Query: 31 GTTLEVNETGTT-LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRG 89
G T+E E G+ LVF+PG + GG + L+ L F ++ + G
Sbjct: 63 GATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSG 122
Query: 90 VTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKP 149
T+N P D + P+L + + + + + G P GGG + + S
Sbjct: 123 GTDNPSAPPADFIRRVLEPLLAKIGIHQ---QTTLLRHGFYPAGGGVVATEVSPVASFNT 179
Query: 150 VQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKG 184
+Q + G I ++RG V V +A R + T G
Sbjct: 180 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAG 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,999,076
Number of Sequences: 539616
Number of extensions: 6731918
Number of successful extensions: 16645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 16539
Number of HSP's gapped (non-prelim): 99
length of query: 401
length of database: 191,569,459
effective HSP length: 120
effective length of query: 281
effective length of database: 126,815,539
effective search space: 35635166459
effective search space used: 35635166459
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)