Query psy13192
Match_columns 401
No_of_seqs 173 out of 586
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:31:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03400 18S_RNA_Rcl1p 18S rR 100.0 4.6E-91 1E-95 696.8 40.4 327 2-334 24-358 (360)
2 KOG3980|consensus 100.0 5.8E-89 1.3E-93 653.9 35.0 325 3-334 31-359 (361)
3 TIGR03399 RNA_3prim_cycl RNA 3 100.0 1.2E-86 2.6E-91 656.5 36.0 296 2-309 30-326 (326)
4 cd00874 RNA_Cyclase_Class_II R 100.0 1.6E-85 3.4E-90 648.6 37.2 296 2-311 28-325 (326)
5 PRK04204 RNA 3'-terminal-phosp 100.0 8E-85 1.7E-89 646.5 38.1 298 2-312 32-332 (343)
6 COG0430 RCL1 RNA 3'-terminal p 100.0 6.3E-85 1.4E-89 631.4 33.0 298 2-312 32-330 (341)
7 cd00875 RNA_Cyclase_Class_I RN 100.0 2.5E-84 5.4E-89 644.0 36.3 306 2-311 28-340 (341)
8 cd00295 RNA_Cyclase RNA 3' pho 100.0 2.1E-81 4.5E-86 622.5 35.0 303 2-312 28-338 (338)
9 PF01137 RTC: RNA 3'-terminal 100.0 2.1E-63 4.6E-68 468.7 18.9 200 2-312 28-228 (228)
10 KOG3980|consensus 99.9 1.4E-24 3E-29 209.7 16.6 307 66-401 12-356 (361)
11 cd01553 EPT_RTPC-like This dom 99.9 2.2E-24 4.7E-29 202.0 15.2 147 2-151 28-175 (211)
12 PF05189 RTC_insert: RNA 3'-te 99.9 7.5E-22 1.6E-26 164.7 12.5 103 153-259 1-103 (103)
13 cd00875 RNA_Cyclase_Class_I RN 99.6 4.8E-14 1E-18 140.9 14.6 286 67-367 11-341 (341)
14 TIGR03400 18S_RNA_Rcl1p 18S rR 99.6 1.6E-13 3.4E-18 138.2 18.3 303 68-400 8-354 (360)
15 PRK04204 RNA 3'-terminal-phosp 99.2 1.7E-10 3.7E-15 115.4 13.3 284 66-370 14-335 (343)
16 cd00874 RNA_Cyclase_Class_II R 99.1 1.9E-10 4.1E-15 114.5 10.6 277 67-366 11-325 (326)
17 PF01137 RTC: RNA 3'-terminal 99.0 4.3E-10 9.3E-15 106.6 7.9 202 68-366 12-227 (228)
18 TIGR03399 RNA_3prim_cycl RNA 3 99.0 1.4E-09 3.1E-14 108.2 10.2 280 66-364 12-326 (326)
19 cd00295 RNA_Cyclase RNA 3' pho 98.9 6.2E-09 1.3E-13 104.2 10.6 283 67-366 11-337 (338)
20 COG0430 RCL1 RNA 3'-terminal p 97.9 0.00023 5E-09 70.5 13.6 276 67-366 15-329 (341)
21 cd01553 EPT_RTPC-like This dom 80.0 17 0.00038 33.7 10.1 119 72-198 16-149 (211)
22 TIGR01072 murA UDP-N-acetylglu 69.3 16 0.00035 37.3 7.5 80 20-116 125-205 (416)
23 PRK12830 UDP-N-acetylglucosami 65.3 36 0.00078 34.7 9.2 62 42-116 143-204 (417)
24 PRK12830 UDP-N-acetylglucosami 59.8 23 0.0005 36.2 6.6 60 43-116 4-63 (417)
25 cd01555 UdpNAET UDP-N-acetylgl 58.3 76 0.0016 32.1 10.0 58 46-116 138-195 (400)
26 PRK09369 UDP-N-acetylglucosami 58.0 1.1E+02 0.0024 31.2 11.2 81 20-116 126-206 (417)
27 cd01556 EPSP_synthase EPSP syn 56.5 1.6E+02 0.0035 29.6 12.1 83 20-116 41-125 (409)
28 TIGR01072 murA UDP-N-acetylglu 56.3 35 0.00075 34.8 7.2 62 41-116 2-63 (416)
29 cd01556 EPSP_synthase EPSP syn 53.1 1.3E+02 0.0029 30.2 10.8 89 15-116 110-199 (409)
30 PRK09369 UDP-N-acetylglucosami 52.4 40 0.00086 34.5 6.8 60 43-116 4-63 (417)
31 PRK11860 bifunctional 3-phosph 48.1 81 0.0017 34.8 8.7 65 42-116 73-139 (661)
32 PLN02338 3-phosphoshikimate 1- 44.4 2.4E+02 0.0053 29.0 11.3 54 55-116 92-145 (443)
33 cd01554 EPT-like Enol pyruvate 42.7 3.1E+02 0.0066 27.7 11.6 86 19-116 255-342 (408)
34 PRK14806 bifunctional cyclohex 42.5 1.5E+02 0.0032 32.9 9.8 59 43-116 449-508 (735)
35 PRK11861 bifunctional prephena 42.4 1.8E+02 0.0038 32.2 10.3 83 20-116 291-375 (673)
36 PRK02427 3-phosphoshikimate 1- 41.3 1.7E+02 0.0036 30.0 9.4 51 56-116 86-136 (435)
37 COG0128 AroA 5-enolpyruvylshik 40.0 1.3E+02 0.0029 31.5 8.3 58 50-116 156-213 (428)
38 PLN02338 3-phosphoshikimate 1- 37.0 2E+02 0.0043 29.7 9.3 65 43-116 157-222 (443)
39 KOG0692|consensus 36.4 49 0.0011 35.1 4.4 73 58-138 263-336 (595)
40 TIGR01356 aroA 3-phosphoshikim 36.0 3E+02 0.0065 27.8 10.3 63 42-116 204-267 (409)
41 COG0128 AroA 5-enolpyruvylshik 35.9 2.1E+02 0.0045 30.0 9.0 85 42-152 220-305 (428)
42 PRK02427 3-phosphoshikimate 1- 35.4 4E+02 0.0087 27.1 11.2 57 51-116 154-211 (435)
43 PF00275 EPSP_synthase: EPSP s 33.6 3.2E+02 0.007 28.0 10.1 55 50-116 152-207 (419)
44 TIGR01356 aroA 3-phosphoshikim 30.6 5E+02 0.011 26.2 10.8 64 43-116 133-196 (409)
45 PLN00218 predicted protein; Pr 26.0 39 0.00085 28.3 1.4 22 60-81 57-78 (151)
46 TIGR03319 YmdA_YtgF conserved 25.4 37 0.00081 36.3 1.5 49 295-350 225-279 (514)
47 cd06396 PB1_NBR1 The PB1 domai 22.5 2.7E+02 0.006 22.2 5.6 40 331-370 6-47 (81)
48 PRK14806 bifunctional cyclohex 22.5 1.9E+02 0.0041 32.0 6.5 70 33-116 294-363 (735)
49 PRK11860 bifunctional 3-phosph 22.0 5.2E+02 0.011 28.4 9.6 85 22-116 130-217 (661)
50 PRK00106 hypothetical protein; 20.7 53 0.0012 35.3 1.5 51 294-351 245-301 (535)
51 cd06407 PB1_NLP A PB1 domain i 20.3 3.4E+02 0.0073 21.5 5.7 37 333-370 8-48 (82)
No 1
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=100.00 E-value=4.6e-91 Score=696.80 Aligned_cols=327 Identities=50% Similarity=0.876 Sum_probs=313.8
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||+++|++++||+|+|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus 24 ~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~d~gtagSitl~lq~lLp~~lf~~ 103 (360)
T TIGR03400 24 RITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPTTRGIGYYLEPLLLLAPFSK 103 (360)
T ss_pred EEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEEeCCCCcchHHHHHHHHHHHhhCC
Confidence 4899999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||++++.++++|.+|||||+|||+|.++++|+++++|++++++|++++
T Consensus 104 ~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l~l~~RG~yP~GgGeV~~~~~p~~~l~~i~l~~~G~v~~ 183 (360)
T TIGR03400 104 KPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLELKILKRGAAPLGGGEVELRCPVIKQLKTIHLTERGKVKR 183 (360)
T ss_pred CCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeccccCCCCEEEEEEEcCccCccceEEEcCCCcEE
Confidence 99999999999999999999999999999999999433499999999999999999999999999999999999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCC--CCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPP--PPATR 238 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~--g~~~~ 238 (401)
|+|+++++++|+|+++||+++|++.|+++++|++|+++++++.+++.+||++|+||||+++||++|+++++++ +
T Consensus 184 irg~~~~~~l~~~v~~r~~~~a~~~L~~~~~~~~i~~~~~~~~~~~~~~G~~i~L~ae~~~g~~~g~~~lg~~~~g---- 259 (360)
T TIGR03400 184 IRGVAYSTRVSPSLANRMIDAARGVLNNLLPDVYITTDVRKGKNSGKSPGYGLSLVAETTNGCIISAEAVSSPGEG---- 259 (360)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCcEEEEEecccccCCCCCCeEEEEEEEeCCCEEEEEEeecCCCCC----
Confidence 9999999999999999999999999999999999999877666678899999999999999999999999999 8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEe-c--c-
Q psy13192 239 TVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH-E--S- 314 (401)
Q Consensus 239 ~~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~-~--~- 314 (401)
.+||+||++||++|++++++|||||+|+|||+++|||||++++|+++++++|+|++|++|++|+|+|++|++++ + +
T Consensus 260 ~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqll~~mALa~~~~S~i~~~~lt~h~~t~l~vi~~f~~v~f~i~~~~~~~~ 339 (360)
T TIGR03400 260 SLPEDLGKRAAYLLLEEIYRGGCVDSTHQPLALLLMALGQEDVSKLRLGKLSEYTVEFLRDLKEFFGVTFKIKDDDSENG 339 (360)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhCCCCcceEEecCCCHHHHHHHHHHHHhcCCEEEEEEcccCCC
Confidence 99999999999999999999999999999999999999976889999999999999999999999999999986 3 3
Q ss_pred -ceeEEeEeEEEEEeeecccc
Q psy13192 315 -GMVDSSFQSLGCLYMALHQK 334 (401)
Q Consensus 315 -g~~~i~~~c~G~g~~n~~~~ 334 (401)
+.+.++ |.|+||+|++||
T Consensus 340 ~~~~~i~--~~G~G~~n~~~~ 358 (360)
T TIGR03400 340 SGKVLLS--CVGIGYTNVSKK 358 (360)
T ss_pred CceEEEE--EEeeeeeccccc
Confidence 567899 999999999886
No 2
>KOG3980|consensus
Probab=100.00 E-value=5.8e-89 Score=653.91 Aligned_cols=325 Identities=48% Similarity=0.826 Sum_probs=314.4
Q ss_pred ccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCC
Q psy13192 3 SYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKK 81 (401)
Q Consensus 3 ~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~ 81 (401)
+.+||+ |++|||++||+++|+||+++|||++++++++||++.|.||.|.||.++|||+|++||+||+|++||++||++.
T Consensus 31 v~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~i~GG~~~~dc~t~~~I~y~leplL~l~pF~k~ 110 (361)
T KOG3980|consen 31 VEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGLILGGTVTHDCPTARSIGYFLEPLLPLCPFAKS 110 (361)
T ss_pred EEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCceeeCCceEEeccCccceeeehhhHHhhhcccCC
Confidence 568999 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeEE
Q psy13192 82 GLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRI 161 (401)
Q Consensus 82 ~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~I 161 (401)
|++|+|+|+||++++|++||++.+++|+|+|||+++ -+++|.+|||||.|||||.|+|+|+++|.||.|.++|+|++|
T Consensus 111 P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~--~elki~kRG~~P~GgGeV~f~~~~~k~l~pI~l~~~g~I~kI 188 (361)
T KOG3980|consen 111 PLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVND--EELKIQKRGFAPEGGGEVVFTVPVVKKLNPIKLTEPGKIKKI 188 (361)
T ss_pred CeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCc--ceEEEEecccCCCCCcEEEEEcCcccccCceeeccCccEEEE
Confidence 999999999999999999999999999999999973 389999999999999999999999999999999999999999
Q ss_pred EEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCCh
Q psy13192 162 RGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP 241 (401)
Q Consensus 162 rGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~a 241 (401)
||++++++++|++|+||+++||+.|+++.||++|++|++++.+++++||++|+|+|||++||+|+++++|+++ +..|
T Consensus 189 rG~ays~rVsP~~A~rm~d~Ak~~l~~~i~dv~i~~d~~~g~~sg~spG~gi~lvAETt~g~~y~Ae~~g~~~---~~~p 265 (361)
T KOG3980|consen 189 RGVAYSTRVSPSLANRMVDAAKRVLHKFIPDVYIYTDVRKGVDSGFSPGFGITLVAETTSGVIYAAEALGKPG---PVTP 265 (361)
T ss_pred EeEEEEcccChHHHHHHHHHHHHHHhhhCCceEEEEeeecccccCCCCCceEEEEEEecCCEEEEhhhcCCCC---CCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999983 4899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEe-ccc--eeE
Q psy13192 242 ETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH-ESG--MVD 318 (401)
Q Consensus 242 E~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~-~~g--~~~ 318 (401)
|++|.+||++||++|+.|||||+++|||+++||||+++|+|++++|++|.|++++|+++||||+++|+++. +++ .+.
T Consensus 266 e~lG~eaa~~LL~~i~~gg~vD~~~q~lai~~MaL~~~~vs~~~~G~l~~~t~~~L~~lk~~f~~ef~v~~~~~g~~~~l 345 (361)
T KOG3980|consen 266 EDLGSEAACQLLEEIYKGGCVDSYLQDLAIVYMALGSEDVSRLLTGPLTNYTVTALRHLKQFFGIEFKVKMEEEGGGKVL 345 (361)
T ss_pred HHHHHHHHHHHHHHHHhCCccCchhhHHHHHHHhhhhcCcceEEecCCChhhHHHHHHHHHHhCEEEEEecCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 333 689
Q ss_pred EeEeEEEEEeeecccc
Q psy13192 319 SSFQSLGCLYMALHQK 334 (401)
Q Consensus 319 i~~~c~G~g~~n~~~~ 334 (401)
++ |.|+||+|+++.
T Consensus 346 v~--c~GiG~tN~nk~ 359 (361)
T KOG3980|consen 346 VT--CVGIGYTNVNKT 359 (361)
T ss_pred EE--eecccccccccc
Confidence 99 999999998764
No 3
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=100.00 E-value=1.2e-86 Score=656.54 Aligned_cols=296 Identities=24% Similarity=0.360 Sum_probs=288.1
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||+++|++++||+|+|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus 30 ~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~d~gtagSi~l~lq~lLp~l~f~~ 109 (326)
T TIGR03399 30 RIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKIRGGDYRFDIGTAGSVTLVLQTLLPALLFAN 109 (326)
T ss_pred EEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCeEEEeCCCChhhHHHHHHHHHHHHhCC
Confidence 4899999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ ++++|.||||||.|||+|.++|+|++.++|++++++|++++
T Consensus 110 ~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~---~~l~v~rRG~yP~GGGeV~~~i~p~~~l~~i~l~~~G~i~~ 186 (326)
T TIGR03399 110 GPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIR---AELELLRRGFYPRGGGEVRLRVEPVKKLKPLELEERGELLR 186 (326)
T ss_pred CCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCc---EEEEEEeCCcCCCCCEEEEEEEccccCCCceeeecCCceEE
Confidence 999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTV 240 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~ 240 (401)
|||+++++++|+|+++||+++|++.|+++++++++++++. +.+.+||++++|||||+ |++++++++++++ .+
T Consensus 187 i~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~---~~~~s~G~~i~L~aet~-g~~~~~~~lg~~g----~~ 258 (326)
T TIGR03399 187 VSGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVL---DKGLGPGSGIVLWAETE-HCRLGFSALGEKG----KS 258 (326)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEec---cCCCCCcEEEEEEEEEC-CeEEEEEecCCCC----CC
Confidence 9999999999999999999999999999999999988875 34689999999999999 9999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEE
Q psy13192 241 PETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFK 309 (401)
Q Consensus 241 aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~ 309 (401)
||+||++||++|++++++|||||+|+|||+++|||||+ ++|+++++++|+|++||+|++++||+++|+
T Consensus 259 aE~vg~~aa~~L~~~i~~g~~vD~~lqdqlll~mALa~-g~S~i~~~~lT~h~~t~l~v~~~f~~v~f~ 326 (326)
T TIGR03399 259 AEKVGEEAAEQLLAELRSGAAVDEHLADQLILYMALAS-GESRFTTSELTMHLRTNIWVIEQFLPVRFE 326 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcC-CCceEEecCCCHHHHHHHHHHHHHhCCeeC
Confidence 99999999999999999999999999999999999996 699999999999999999999999999984
No 4
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=100.00 E-value=1.6e-85 Score=648.61 Aligned_cols=296 Identities=25% Similarity=0.365 Sum_probs=288.5
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||++++++++||+|+|.||.+.||+|+|||+|||||+||||++||+++|++
T Consensus 28 ~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~i~gG~~~~d~~tagsi~l~lq~lLp~~~f~~ 107 (326)
T cd00874 28 RIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGKIKGGDYEFDIGTAGSITLVLQTLLPALLFAD 107 (326)
T ss_pred EEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCcEEEeCCCCcchHHHHHHHHHHHhcCC
Confidence 5899999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ ++++|.||||||+|||+|.++|+|++.++|+++.++|++++
T Consensus 108 ~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~---~~l~v~rRG~yP~GgGeV~~~v~p~~~l~~i~l~~~g~i~~ 184 (326)
T cd00874 108 GPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIE---AELEVLRRGFYPRGGGEVVLTVEPSKLLPPLLLEERGEIEK 184 (326)
T ss_pred CCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCc---EEEEEEeCCcCCCCCEEEEEEEecccCCCcceeecCCCeEE
Confidence 999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhh-cCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLS-YLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRT 239 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~-~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~ 239 (401)
|||+++++++|+++++||+++|++.|++ +.+|++++.++.+ +.+||++++||||+++ |+++++++++++ +
T Consensus 185 irg~~~~~~l~~~va~r~~~~a~~~L~~~~~~dv~i~~~~~~----~~s~G~~i~L~aet~~-~~~~~~~lg~~g----~ 255 (326)
T cd00874 185 IRGISHAANLPPHVAERQAEAAAALLRKALGLQIEIEPEDQS----ALGPGSGIVLWAEYEH-SRLGFSALGKKG----V 255 (326)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHHHhhccCCCeEEEEEecC----CCCCCEEEEEEEEECc-EEEEEEEcCCCC----C
Confidence 9999999999999999999999999999 8889999988754 5799999999999999 999999999999 9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEE
Q psy13192 240 VPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311 (401)
Q Consensus 240 ~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~ 311 (401)
+||+||++||++|++++++|||||+|+|||+++|||||+ +|+++++++|+|++||+|++|+|+|++|+++
T Consensus 256 ~aE~vg~~aa~~Ll~~i~~gg~vD~~lqdqlll~mALa~--~s~i~~~~lT~h~~t~l~vi~~f~~v~f~i~ 325 (326)
T cd00874 256 PAEKVGEEAAEELLAYLSSGAAVDEHLADQLIPFMALAG--GSEFRTGELTLHLQTNIWVIEKFLGVKFRIE 325 (326)
T ss_pred CHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhcC--CceEEecCCCHHHHHHHHHHHHhcCcEEEEe
Confidence 999999999999999999999999999999999999995 8999999999999999999999999999986
No 5
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=100.00 E-value=8e-85 Score=646.53 Aligned_cols=298 Identities=23% Similarity=0.346 Sum_probs=287.9
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||++++++++||+|+|.||.+.+|+|+|||+|||||+||||++||+++|++
T Consensus 32 ~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~i~~g~~~~d~~tagsi~l~lq~lLp~~~f~~ 111 (343)
T PRK04204 32 RITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGPIRGGDYRFDIGTAGSITLVLQTVLPALLFAD 111 (343)
T ss_pred EEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCCccCCeEEEecCCCcchhhHHHHHHHHHhcCC
Confidence 4799999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ ++++|.+|||||.|||+|.++|+|. +++|++++++|++++
T Consensus 112 ~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~---~~l~i~rRG~yP~GGGeV~~~i~p~-~l~pi~l~e~G~i~~ 187 (343)
T PRK04204 112 GPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIE---AEIELLRRGFYPAGGGEVALEVEPS-KLRPLELLERGELLR 187 (343)
T ss_pred CCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCc---EEEEEEeCCccCCCCeEEEEEEccC-CccceeeccCCCcEE
Confidence 999999999999999999999999999999999998 9999999999999999999999994 899999999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHH--HhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKG--ILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATR 238 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~--~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~ 238 (401)
|||+++++++|+|+++||+++|++ .|+.++++++++++.. +++.+||++++||||++ |++++++++++++
T Consensus 188 irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~~---~~~~s~G~gi~L~aet~-g~~~~~~~lg~~g---- 259 (343)
T PRK04204 188 IRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEEL---SRGLGPGSGIVLWAESE-HITEGFDALGERG---- 259 (343)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEeec---cCCCCCceEEEEEEEEC-CEEEEEEecCCCC----
Confidence 999999999999999999999999 8888889998877542 34689999999999999 9999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEe
Q psy13192 239 TVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312 (401)
Q Consensus 239 ~~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~ 312 (401)
++||+||++||++|++++++|||||+|+|||+++|||||+ ++|+++++++|+|++||+|++++|++++|++++
T Consensus 260 ~~aE~vg~~aa~~Ll~~i~~gg~vD~~lqdqll~~mALa~-g~S~i~~~~lT~h~~t~l~vi~~f~~v~f~v~~ 332 (343)
T PRK04204 260 KPAEVVGEEAAEELLRYLASGAAVDEHLADQLILPMALAG-GEGSFTVAELTSHLLTNIWVVEKFLPVKFEVEE 332 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhCC-CCceEEecCCCHHHHHHHHHHHHhcCcEEEEEE
Confidence 9999999999999999999999999999999999999997 599999999999999999999999999999987
No 6
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=100.00 E-value=6.3e-85 Score=631.37 Aligned_cols=298 Identities=27% Similarity=0.410 Sum_probs=288.0
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++||++++||||++.|+++|||+|.|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus 32 rI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~i~gG~~~~digTAGsi~LvlQtlLp~~~fa~ 111 (341)
T COG0430 32 RIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGKIRGGDYRVDIGTAGSITLVLQTLLPLLLFAD 111 (341)
T ss_pred EEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccceeCceEEEEecCCCceeeeHHHHHHHhhcCC
Confidence 4899999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+++||||++|+|++||++.|++|+|+|||+. +++++.||||||+|||+|.++|+|.....++.+.++|++.+
T Consensus 112 ~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~---~~l~vlkRG~yP~GGGeV~~~V~p~~~~~~l~l~e~g~i~~ 188 (341)
T COG0430 112 GPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIE---CELEVLKRGFYPRGGGEVLLTVEPPKEKLPLHLTERGEIEK 188 (341)
T ss_pred CCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccc---eEEEEEecccCCCCCcEEEEEEcCccccCceeeecccceeE
Confidence 999999999999999999999999999999999977 99999999999999999999999987766699999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTV 240 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~ 240 (401)
|+|+++++++|+|+|+||+++|++.|++..++++|+.+++++. .+||++|+|||+++ ++.++++++|++| ++
T Consensus 189 v~Gia~~~~lp~hvAeRqa~~A~~~L~~~~~~v~i~~~~~~~~---~spG~gI~L~ae~~-~~~~g~~~lGe~G----~~ 260 (341)
T COG0430 189 VRGIAHSTNLPPHVAERQAEAAKELLGKLGLEVEIYTEVRRGG---LSPGSGIVLWAESE-GSRIGADALGEKG----KS 260 (341)
T ss_pred EEEEEEeccCCcHHHHHHHHHHHHHhhhccCCceEEEeecccC---CCCCceEEEEEeec-CceeehhhcccCC----CC
Confidence 9999999999999999999999999999999999998877652 69999999999999 7899999999999 99
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEe
Q psy13192 241 PETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312 (401)
Q Consensus 241 aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~ 312 (401)
||.||++||++|++++++|+|||+|++||+++||||++ .|++++.++|.|..||+|++|+|++++|+++.
T Consensus 261 aE~Vg~~aa~~Ll~~l~sgaavD~hlaDqli~~malag--~g~~~v~e~t~Hl~tni~vie~Fl~~~~~~~~ 330 (341)
T COG0430 261 AEVVGEEAAKELLRELESGAAVDEHLADQLIPYMALAG--IGEFTVAEVTSHLLTNIWVIERFLGVEFEVEG 330 (341)
T ss_pred HHHHHHHHHHHHHHHhhcCCccchhhhhhhhhHHhhcc--CceEEeeeeehhhhhhHHHHHHhcCeeEEeec
Confidence 99999999999999999999999999999999999994 88999999999999999999999999999765
No 7
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=100.00 E-value=2.5e-84 Score=644.04 Aligned_cols=306 Identities=50% Similarity=0.865 Sum_probs=295.7
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||++++++++||+|+|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus 28 ~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~i~gG~~~~d~gtagSI~l~Lq~lLp~~~f~~ 107 (341)
T cd00875 28 IIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNHDCPVSRGIGYFLEPLLLLAPFGK 107 (341)
T ss_pred EEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCCccCCcEEEeCCCCcchHHHHHHHHHHHhhCC
Confidence 4899999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||+..+.+++++.+|||||.|||+|.++++|+++++|+.+.++|++++
T Consensus 108 ~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG~yP~GgG~V~~~~~~~~~l~~i~l~~~G~i~~ 187 (341)
T cd00875 108 KPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRGVAPGGGGEVGFRCPVRKPLTPHLNDSPGRIKR 187 (341)
T ss_pred CCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEeccCCCCCCEEEEEEecCcccccceeeccCCceEE
Confidence 99999999999999999999999999999999999534599999999999999999999999989999999999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTV 240 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~ 240 (401)
|||+++++++|+++++||+++|++.|+++++|++|++++.++.+++.+||++|+||||+++||+++++++++++ ..
T Consensus 188 irG~~~~~~l~~~va~r~~~~a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~gi~L~aet~~g~~~~~~~~g~~g----~~ 263 (341)
T cd00875 188 IRGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIYTDVRKGDNSGKSPGFGISLVAETTTGVLYSAENVSPAG----GE 263 (341)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEecccccCCCCCCeEEEEEEEECCCEEEEEeecCCCC----CC
Confidence 99999999999999999999999999999999999999777767789999999999999999999999999998 64
Q ss_pred ---hHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEec-CCChHH--HHHHHHHHHHcCcEEEEE
Q psy13192 241 ---PETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIG-PLSPYT--VQFLRHLKQFFGLKFKLE 311 (401)
Q Consensus 241 ---aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g-~lT~h~--~t~l~vi~~flgv~f~i~ 311 (401)
||+||++||++|+++|++|||||+|+|||+++|||||++++|++++| +++.|+ +..+|.+++|||++|.++
T Consensus 264 ~~~aE~vg~~aa~~Ll~ei~~gg~vD~~lqdqll~~mALa~~~vs~~~~g~~~~~~~~~i~~lr~lk~f~~~~f~~~ 340 (341)
T cd00875 264 SEVPEDLGRECAYQLLEEISRGGCVDSYQQPLALLLMALGSEDVGRLRLGGPLIDEEFKIHLLRDLKEFFGIMFKID 340 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhCCCCceeEEeccccCcchhHHHHHHHHHHhhCeEEecc
Confidence 99999999999999999999999999999999999998899999997 899999 999999999999999986
No 8
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=100.00 E-value=2.1e-81 Score=622.47 Aligned_cols=303 Identities=22% Similarity=0.334 Sum_probs=290.1
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|+|++++|||++++++++||+|+|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus 28 rI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~i~gG~~~~d~gtagSi~l~lq~lLp~~~fa~ 107 (338)
T cd00295 28 RIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGNIIGGDVRFACGSAGGCGLFLEPILIACLFAD 107 (338)
T ss_pred EEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 4899999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcce----EeccCC
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPV----QSKDMG 156 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i----~l~~~G 156 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ .++.+.+|||||.|||++...+.|...++++ .+.++|
T Consensus 108 ~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~---~~~~~~r~g~~p~ggG~~~~~~~p~~~~~~l~~~~~l~~~G 184 (338)
T cd00295 108 GPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIH---GDELELRHGFRGAAGGGGAEENFLCASFKELLLGERGSEFG 184 (338)
T ss_pred CCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCc---ccceEEEEEEecCCCCeEEEEEeccCcccccccchhhccCC
Confidence 999999999999999999999999999999999998 8999999999999999999999998778787 566679
Q ss_pred ceeEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCC
Q psy13192 157 KIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPA 236 (401)
Q Consensus 157 ~i~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~ 236 (401)
++++|||+++++++|+++++||+++|++.|+++.+|++++.++.++.+.+.+||++|+||||+++|++++++++++++
T Consensus 185 ~~~~irg~~~~~~l~~~va~R~~~~a~~~l~~~~~dv~i~~~~~~~~~~~~s~G~gi~L~aet~~g~~~~~~~lg~~g-- 262 (338)
T cd00295 185 RQFRGEGIAAGTRVPPAFAEREIASAAGSFNLFEPDIFILPDDQRGDECGNGPGNSISLEAESEKGCSEAAEHCGEAG-- 262 (338)
T ss_pred ceEEEEEEEEEccCCHHHHHHHHHHHHHHhcccCCceEEEEeccccccCCCCCCeEEEEEEEECCCEEEEEEEcCCCC--
Confidence 999999999999999999999999999999998899999999876666789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHH--HHHHHH-HHHcCcEEEEEe
Q psy13192 237 TRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTV--QFLRHL-KQFFGLKFKLEH 312 (401)
Q Consensus 237 ~~~~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~--t~l~vi-~~flgv~f~i~~ 312 (401)
.+||+||++||++|++++++|||||+|+|||+++|||||+ +.+++.+..+|.|+. |++|++ |+|+|++|++++
T Consensus 263 --~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqlll~mALa~-g~~~~~~~~~t~H~~~~t~~~~~~~~f~~~~f~i~~ 338 (338)
T cd00295 263 --ESAEDVAAFCAKELKEVIASGAAVDEYLADQLLLGMALAG-EAGEFIVAGPLCHLLQLTNFARDVEAFFNCEFRFIE 338 (338)
T ss_pred --CCHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHhcC-CCccEEeccccccchhHHHHHHHHHHhcCcEEEEEC
Confidence 9999999999999999999999999999999999999996 567788999999999 999999 999999999973
No 9
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=100.00 E-value=2.1e-63 Score=468.67 Aligned_cols=200 Identities=37% Similarity=0.593 Sum_probs=175.8
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||++++++++||+|+|.||.+++|+|+|||+|||||+||||++||+++|++
T Consensus 28 ~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg~i~~g~~~~d~~tagsi~l~lq~llp~~~f~~ 107 (228)
T PF01137_consen 28 RIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPGEIRGGDYTFDCGTAGSISLVLQALLPLLLFAK 107 (228)
T ss_dssp EEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE--EE-ECEEEEEEETTCBHHHHHHHHCCCHCCSS
T ss_pred EEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECCCccCCcEEEecCCCceeeeeHHHHHHHHHhcC
Confidence 4789999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ .+++|.+|||||.|||||.++|+|++.++|++
T Consensus 108 ~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~---~~l~i~krG~~P~GgGeV~~~v~p~~~l~~i~--------- 175 (228)
T PF01137_consen 108 GPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIP---VELKIIKRGFYPKGGGEVQLRVPPVKPLKPID--------- 175 (228)
T ss_dssp SEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-E---CEEEEEE--BTTTB-EEEEEEEE-SSS---EE---------
T ss_pred CCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCC---cEEEEEEeccCCCCCeEEEEEEEccccccccc---------
Confidence 999999999999999999999999999999999998 77999999999999999999999999999998
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTV 240 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~ 240 (401)
T Consensus 176 -------------------------------------------------------------------------------- 175 (228)
T PF01137_consen 176 -------------------------------------------------------------------------------- 175 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEe
Q psy13192 241 PETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312 (401)
Q Consensus 241 aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~ 312 (401)
||||+|+|||+++|||||++++|+++++++|+|++|++|++|+|+|++|++++
T Consensus 176 -------------------g~vD~~~qdqll~~mALa~g~vS~i~~g~lt~h~~t~l~vi~~fl~v~f~v~~ 228 (228)
T PF01137_consen 176 -------------------GCVDEHLQDQLLLFMALAKGDVSRIRVGPLTLHTVTNLRVIEQFLGVKFKVEE 228 (228)
T ss_dssp -------------------CSS-HHHHHHHHHHHHCCTSSEEEEEESCSSHHHHHHHHHHHHHCS-EEEE--
T ss_pred -------------------hhhhhhhHHHHHHHHHhCCCCceEEEecCCCHHHHHHHHHHHHHcCcEEEEeC
Confidence 99999999999999999985589999999999999999999999999999974
No 10
>KOG3980|consensus
Probab=99.92 E-value=1.4e-24 Score=209.68 Aligned_cols=307 Identities=24% Similarity=0.314 Sum_probs=222.2
Q ss_pred hhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeeccc----C--CCCcEEEE
Q psy13192 66 GYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGME----P--EGGGEIYF 139 (401)
Q Consensus 66 sl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~----P--~GGGeV~~ 139 (401)
+-+|+-.|.+++++++|+++ ..++..+-+|++..++.+|+.+|+++. ||..+++++.|.+ | .-||.+++
T Consensus 12 ~q~lr~~lvls~Lsg~pvrv--~kiR~~~~~PGlr~~~~s~lrLL~~iT---nGs~ie~~~~gTtv~f~Pg~i~GG~~~~ 86 (361)
T KOG3980|consen 12 GQALRLRLVLSTLSGKPVRV--EKIRAGRPNPGLKDQHLSFLRLLRDIT---NGSVIEIEYTGTTVIFTPGLILGGTVTH 86 (361)
T ss_pred hHHHHHHHHHHHhcCCceEE--EEeccCCCCCCchHHHHHHHHHHHhhc---CCcEEEEeecccEEEEcCceeeCCceEE
Confidence 45789999999999999998 999999999999999999999999998 8899999999883 7 78999999
Q ss_pred EeeCCCC----CcceEeccCC----ceeEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCee-EEeecccCCCCCCCCc
Q psy13192 140 NCPIIKS----IKPVQSKDMG----KIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY-LSVDHCKGPKSGKSPG 210 (401)
Q Consensus 140 ~~~p~~~----L~~i~l~~~G----~i~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~-i~~d~~~~~~~~~~pG 210 (401)
.|+..+. ++|+..+.+. -...++|++.+...|+ .+-|..++..+|++|+.+-+ +.+. +++. .+..|
T Consensus 87 dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~--VD~ik~~~lpvlkkFgv~~~elki~-kRG~--~P~Gg 161 (361)
T KOG3980|consen 87 DCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPS--VDYIKAVLLPVLKKFGVNDEELKIQ-KRGF--APEGG 161 (361)
T ss_pred eccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcc--hHHHHHHHHHHHHHhCcCcceEEEE-eccc--CCCCC
Confidence 9987664 5666655542 2347899999888777 57777788888999987544 4433 3443 34556
Q ss_pred eEEEEEEEecCc-eEEeeeeccC----CC-----CCCCCChHHHHHHHHHHHHHHHhcCCC-CCCC-------CchhhHH
Q psy13192 211 FGGSIYAESSTG-VVLTADAVSP----PP-----PATRTVPETLGEQLAYNLLEEISRGGM-VDSS-------FQSLGCL 272 (401)
Q Consensus 211 ~~i~L~aet~~g-~~~g~~~l~~----~g-----~~~~~~aE~vg~~aa~~Ll~~i~~g~~-VD~~-------~qdqll~ 272 (401)
..|.+.+..-.. +.+.-...++ +| +++|+.|++|.+.|.+.|.++|.+-=+ .|.+ ..++-++
T Consensus 162 GeV~f~~~~~k~l~pI~l~~~g~I~kIrG~ays~rVsP~~A~rm~d~Ak~~l~~~i~dv~i~~d~~~g~~sg~spG~gi~ 241 (361)
T KOG3980|consen 162 GEVVFTVPVVKKLNPIKLTEPGKIKKIRGVAYSTRVSPSLANRMVDAAKRVLHKFIPDVYIYTDVRKGVDSGFSPGFGIT 241 (361)
T ss_pred cEEEEEcCcccccCceeeccCccEEEEEeEEEEcccChHHHHHHHHHHHHHHhhhCCceEEEEeeecccccCCCCCceEE
Confidence 667666653321 1111122221 12 478899999997777777767753111 2322 2356666
Q ss_pred HHHhcCCCcceE--Ee---cCCChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCCChh
Q psy13192 273 YMALHQKDVSQL--LI---GPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPY 347 (401)
Q Consensus 273 ~mALa~~g~S~i--~~---g~lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~~~~ 347 (401)
+.|.+.+|.+-. .+ |++++|... ....++++.. +. .+|+++-..|.+.+-||.++.|||+|++.||++.+
T Consensus 242 lvAETt~g~~y~Ae~~g~~~~~~pe~lG-~eaa~~LL~~---i~-~gg~vD~~~q~lai~~MaL~~~~vs~~~~G~l~~~ 316 (361)
T KOG3980|consen 242 LVAETTSGVIYAAEALGKPGPVTPEDLG-SEAACQLLEE---IY-KGGCVDSYLQDLAIVYMALGSEDVSRLLTGPLTNY 316 (361)
T ss_pred EEEEecCCEEEEhhhcCCCCCCCHHHHH-HHHHHHHHHH---HH-hCCccCchhhHHHHHHHhhhhcCcceEEecCCChh
Confidence 677654332211 11 246666543 3334443211 22 58899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcceEEeeecCCCCCCccccccccccCCceEEEEEeeeeccCC
Q psy13192 348 TVQFLRHLKQFFGLKFKLERESEINPEQEEDEKPLRCGQEKVQLTCVHIFHLDT 401 (401)
Q Consensus 348 ~~~~lr~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 401 (401)
++.+|||+|+|||++||+++.++. ..++.+||+|+||+.+
T Consensus 317 t~~~L~~lk~~f~~ef~v~~~~~g--------------~~~~lv~c~GiG~tN~ 356 (361)
T KOG3980|consen 317 TVTALRHLKQFFGIEFKVKMEEEG--------------GGKVLVTCVGIGYTNV 356 (361)
T ss_pred hHHHHHHHHHHhCEEEEEecCCCC--------------CceEEEEeeccccccc
Confidence 999999999999999999964432 1269999999999863
No 11
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.92 E-value=2.2e-24 Score=202.00 Aligned_cols=147 Identities=19% Similarity=0.269 Sum_probs=137.4
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.+-|||. +.+|||+.||.+++++++++|++++...+.+++.++|.|+.++|+++.+++.++||+++++|+++++++|++
T Consensus 28 ~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~~l~g~~i~~~~~s~g~~~d~~~~l~~la~~a~ 107 (211)
T cd01553 28 TVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPGTVRGGDVRFAIGSAGSCTDVLQTILPLLLFAK 107 (211)
T ss_pred EEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCCCccceEEEeccCCcccHHHHHHHHHHHHHhCC
Confidence 3567887 579999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQ 151 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~ 151 (401)
.+++|+..|+|++++||..|+.+.+++|.|+|||++ ++.+..++||||.|+|++.+.+.|...+++..
T Consensus 108 g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~---~~~~~~~~~~~~~g~g~~~~~i~g~~~l~~~~ 175 (211)
T cd01553 108 GPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAH---QEETLLRHGFYPAGGGVVATEVSPVEKLNTAQ 175 (211)
T ss_pred CCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCc---ceeeeeeeeeccCCCCccEEEEcCCccccccc
Confidence 999999999999999999999999999999999998 89999999999999999999998865555443
No 12
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=99.87 E-value=7.5e-22 Score=164.70 Aligned_cols=103 Identities=35% Similarity=0.499 Sum_probs=90.4
Q ss_pred ccCCceeEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccC
Q psy13192 153 KDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSP 232 (401)
Q Consensus 153 ~~~G~i~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~ 232 (401)
++||++++|+|+++++++|+|+++||+++|++.|+++.++++|+.|+......+.+||++|+|||+|++||++|++++++
T Consensus 1 terG~~~~i~g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ae~~~g~~~g~~alG~ 80 (103)
T PF05189_consen 1 TERGRLKRIRGIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVAETENGCVLGFSALGE 80 (103)
T ss_dssp -C--SECEEEEEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEEEETTS-EEEEEEEE-
T ss_pred CCCCceEEEEEEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEEEECCCEEEEEEecCC
Confidence 47999999999999999999999999999999999999999999987766677899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcC
Q psy13192 233 PPPATRTVPETLGEQLAYNLLEEISRG 259 (401)
Q Consensus 233 ~g~~~~~~aE~vg~~aa~~Ll~~i~~g 259 (401)
++ ++||+||++||++|+++|++|
T Consensus 81 ~g----~~aE~Vg~~Aa~~L~~~i~~G 103 (103)
T PF05189_consen 81 RG----VPAEKVGEEAAEELLEYIRSG 103 (103)
T ss_dssp TT----S-HHHHHHHHHHHHHHHHCT-
T ss_pred CC----CCHHHHHHHHHHHHHHHHhcC
Confidence 99 999999999999999999875
No 13
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=99.56 E-value=4.8e-14 Score=140.89 Aligned_cols=286 Identities=21% Similarity=0.280 Sum_probs=178.6
Q ss_pred hhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecc----cC--CCCcEEEEE
Q psy13192 67 YYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGM----EP--EGGGEIYFN 140 (401)
Q Consensus 67 l~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf----~P--~GGGeV~~~ 140 (401)
=+|.+.|.+++.+++|++| +-++.+...|++......++.+++++. ++....++..|. .| .-||.+.+.
T Consensus 11 QilR~alaLS~ltgkpv~I--~nIR~~r~~PGL~~qhl~~l~ll~~it---~g~~~g~~~gst~l~F~PG~i~gG~~~~d 85 (341)
T cd00875 11 NFFRQRLVLATLSGKPIII--KKIRSDDTNPGLRDHEVSFLRLLEKVT---NGSVIEISYTGTTLIYKPGLITGGVLNHD 85 (341)
T ss_pred HHHHHHHHHHHhcCCCEEE--EEecCCCCCCChHHHHHHHHHHHHHHc---CCcEEeeecCceEEEEECCCccCCcEEEe
Confidence 3678899999999999998 677777777999999999999999996 445556665553 57 458999999
Q ss_pred eeCCCC----CcceEec---cCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCe-eEEeeccc-CCCCCCCCc
Q psy13192 141 CPIIKS----IKPVQSK---DMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDV-YLSVDHCK-GPKSGKSPG 210 (401)
Q Consensus 141 ~~p~~~----L~~i~l~---~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v-~i~~d~~~-~~~~~~~pG 210 (401)
|....+ |+++.+. ..+.+ ..++|.+.++..|+ .+-+.......|++++... .+.+++.+ +. .+..|
T Consensus 86 ~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~sps--vD~~~~v~lP~l~~fG~~~~~~~l~v~rrG~--yP~Gg 161 (341)
T cd00875 86 CPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPS--VDSIRTATLPLLKKFGIPDEELELKILKRGV--APGGG 161 (341)
T ss_pred CCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCC--HHHHHHHHHHHHHHcCCCccceEEEEEeccC--CCCCC
Confidence 998765 3443332 23333 47999998887666 3555555566678888732 23333333 32 23335
Q ss_pred eEEEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhc-CCCCCC-------CCchhh
Q psy13192 211 FGGSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISR-GGMVDS-------SFQSLG 270 (401)
Q Consensus 211 ~~i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~-g~~VD~-------~~qdql 270 (401)
..|.+....... +-.-.+.++| +.++..+|++++.|.+.|.+.+.. .-.+|. ......
T Consensus 162 G~V~~~~~~~~~--l~~i~l~~~G~i~~irG~~~~~~l~~~va~r~~~~a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~g 239 (341)
T cd00875 162 GEVGFRCPVRKP--LTPHLNDSPGRIKRIRGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIYTDVRKGDNSGKSPGFG 239 (341)
T ss_pred EEEEEEecCccc--ccceeeccCCceEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEecccccCCCCCCeE
Confidence 555555432111 1111122222 234577899995544444333321 111121 123556
Q ss_pred HHHHHhcCCCc--ceEEecCC--C--hHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeec-C
Q psy13192 271 CLYMALHQKDV--SQLLIGPL--S--PYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIG-P 343 (401)
Q Consensus 271 l~~mALa~~g~--S~i~~g~l--T--~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~-~ 343 (401)
+++.|-...+. |.-..|+- + .-....-+..++++.. +. .+++++..+|-.-+-||++..+||+|+++| +
T Consensus 240 i~L~aet~~g~~~~~~~~g~~g~~~~~aE~vg~~aa~~Ll~e---i~-~gg~vD~~lqdqll~~mALa~~~vs~~~~g~~ 315 (341)
T cd00875 240 ISLVAETTTGVLYSAENVSPAGGESEVPEDLGRECAYQLLEE---IS-RGGCVDSYQQPLALLLMALGSEDVGRLRLGGP 315 (341)
T ss_pred EEEEEEECCCEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHH---HH-cCCccChhHHHHHHHHHHhCCCCceeEEeccc
Confidence 66666543221 11112221 1 1222223444443211 22 577888888888888999999999999995 9
Q ss_pred CChhH--HHHHHHHHHhhcceEEeee
Q psy13192 344 LSPYT--VQFLRHLKQFFGLKFKLER 367 (401)
Q Consensus 344 ~~~~~--~~~lr~~~~~~g~~f~~~~ 367 (401)
+++|. |++|||||+|||++||+++
T Consensus 316 ~~~~~~~i~~lr~lk~f~~~~f~~~~ 341 (341)
T cd00875 316 LIDEEFKIHLLRDLKEFFGIMFKIDD 341 (341)
T ss_pred cCcchhHHHHHHHHHHhhCeEEeccC
Confidence 99999 9999999999999999963
No 14
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=99.56 E-value=1.6e-13 Score=138.20 Aligned_cols=303 Identities=22% Similarity=0.326 Sum_probs=191.9
Q ss_pred hHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeec----ccC--CCCcEEEEEe
Q psy13192 68 YLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRG----MEP--EGGGEIYFNC 141 (401)
Q Consensus 68 ~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rG----f~P--~GGGeV~~~~ 141 (401)
+|.+.|.++.++++|++| ..++.....|++......++.+++++. ++-...+...+ |.| .-||.+.++|
T Consensus 8 ilR~alaLS~itgkpv~I--~nIR~~R~~PGL~~qhl~~l~l~~~i~---~a~~~g~~~gst~l~F~Pg~i~gG~~~~d~ 82 (360)
T TIGR03400 8 NFRQRLVLSTLSGKPVRI--TKIRSDDENPGLRDYEVSFLRLLEKVT---NGSKIEISYTGTTVIYKPGLITGGSVTHEC 82 (360)
T ss_pred HHHHHHHHHHhcCCCEEE--EEeccCCCCCCcHHHHHHHHHHHHHhc---CCeEeeeecCceEEEEECCcccCCeEEEeC
Confidence 678889999999999998 666766668999999999999999986 44555555555 467 4579999999
Q ss_pred eCCCC----Ccce---EeccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCC---CeeEEeecccCCCCCCCCc
Q psy13192 142 PIIKS----IKPV---QSKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLP---DVYLSVDHCKGPKSGKSPG 210 (401)
Q Consensus 142 ~p~~~----L~~i---~l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~---~v~i~~d~~~~~~~~~~pG 210 (401)
....+ |+++ .+-..+++ ..++|.+.++-.|+ .+-+.......|++++. ++++.+. +++-. +..|
T Consensus 83 gtagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPs--vDy~~~v~lp~l~~~G~~~~~~~l~l~-~RG~y--P~Gg 157 (360)
T TIGR03400 83 PTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPS--VDTIRTATLPLLKKFGIPDEGLELKIL-KRGAA--PLGG 157 (360)
T ss_pred CCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEE-ecccc--CCCC
Confidence 88664 3332 23334443 57999998876666 35555556667788887 6666654 33431 2335
Q ss_pred eEEEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhcCCC--CC-------CCCchh
Q psy13192 211 FGGSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISRGGM--VD-------SSFQSL 269 (401)
Q Consensus 211 ~~i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~g~~--VD-------~~~qdq 269 (401)
..|.+...-... .-..+ +.++| +.++..+|++++.|.+.|.+.+. ... +| ......
T Consensus 158 GeV~~~~~p~~~-l~~i~-l~~~G~v~~irg~~~~~~l~~~v~~r~~~~a~~~L~~~~~-~~~i~~~~~~~~~~~~~~G~ 234 (360)
T TIGR03400 158 GEVELRCPVIKQ-LKTIH-LTERGKVKRIRGVAYSTRVSPSLANRMIDAARGVLNNLLP-DVYITTDVRKGKNSGKSPGY 234 (360)
T ss_pred EEEEEEEcCccC-ccceE-EEcCCCcEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCC-CcEEEEEecccccCCCCCCe
Confidence 555555543211 00111 12222 12345688998555545443332 111 12 123456
Q ss_pred hHHHHHhcCCCc--ceEEec----CCChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecC
Q psy13192 270 GCLYMALHQKDV--SQLLIG----PLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGP 343 (401)
Q Consensus 270 ll~~mALa~~g~--S~i~~g----~lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~ 343 (401)
.+++.|-...+. |.-.+| ..+...+ .-+.+++++.. +. .+++++-.+|-.-+-||++..+++++++.|+
T Consensus 235 ~i~L~ae~~~g~~~g~~~lg~~~~g~~aE~v-g~~aa~~L~~~---i~-~gg~vD~~lqdqll~~mALa~~~~S~i~~~~ 309 (360)
T TIGR03400 235 GLSLVAETTNGCIISAEAVSSPGEGSLPEDL-GKRAAYLLLEE---IY-RGGCVDSTHQPLALLLMALGQEDVSKLRLGK 309 (360)
T ss_pred EEEEEEEeCCCEEEEEEeecCCCCCCCHHHH-HHHHHHHHHHH---Hh-cCCccChhHHHHHHHHHHhCCCCcceEEecC
Confidence 666666543221 111122 1222222 22333333211 22 4677887777777889999988899999999
Q ss_pred CChhHHHHHHHHHHhhcceEEeeecCCCCCCccccccccccCCceEEEEEeeeeccC
Q psy13192 344 LSPYTVQFLRHLKQFFGLKFKLERESEINPEQEEDEKPLRCGQEKVQLTCVHIFHLD 400 (401)
Q Consensus 344 ~~~~~~~~lr~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 400 (401)
+|++++..||++|+|||++|++++.++ |+. .+.+.++|+|+|+..
T Consensus 310 lt~h~~t~l~vi~~f~~v~f~i~~~~~------~~~------~~~~~i~~~G~G~~n 354 (360)
T TIGR03400 310 LSEYTVEFLRDLKEFFGVTFKIKDDDS------ENG------SGKVLLSCVGIGYTN 354 (360)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEEccc------CCC------CceEEEEEEeeeeec
Confidence 999999999999999999999975321 111 245889999999875
No 15
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=99.20 E-value=1.7e-10 Score=115.40 Aligned_cols=284 Identities=17% Similarity=0.147 Sum_probs=176.8
Q ss_pred hhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeec-----ccC--CCCcEEE
Q psy13192 66 GYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRG-----MEP--EGGGEIY 138 (401)
Q Consensus 66 sl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rG-----f~P--~GGGeV~ 138 (401)
+=+|...|.++..+++|++| +.++.+...|++......++.+++++. |+ +++-.+.| |+| .-||...
T Consensus 14 gQilR~alaLS~ltgkpv~I--~nIR~~r~~PGL~~qhl~~l~l~~~i~---~~-~v~g~~~gst~l~f~Pg~i~~g~~~ 87 (343)
T PRK04204 14 GQILRTALALSAITGKPFRI--TNIRANRPNPGLLRQHLTAVKAAAEIC---NA-EVEGAELGSQELVFIPGPIRGGDYR 87 (343)
T ss_pred HHHHHHHHHHHHhhCCCEEE--EEeccCCCCCCchHHHHHHHHHHHHHc---CC-eEEeeecCceEEEEECCCccCCeEE
Confidence 56788899999999999998 666666667999999999999999986 33 44444444 467 5589999
Q ss_pred EEeeCCCC----Ccce---EeccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCc
Q psy13192 139 FNCPIIKS----IKPV---QSKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPG 210 (401)
Q Consensus 139 ~~~~p~~~----L~~i---~l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG 210 (401)
++|....+ |+++ .+-..+.+ ..++|.+.+...|+ .+-+.......|++++.++++.+. +++.. +..|
T Consensus 88 ~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPs--vDy~~~v~lP~l~~~G~~~~l~i~-rRG~y--P~GG 162 (343)
T PRK04204 88 FDIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPP--IDYIRRVTLPLLRRMGIEAEIELL-RRGFY--PAGG 162 (343)
T ss_pred EecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCC--HHHHHHHHHHHHHHcCCcEEEEEE-eCCcc--CCCC
Confidence 99987654 2222 22223333 57999998877666 455556666677888887666554 34432 3446
Q ss_pred eEEEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHH--HHHHHHhcCCC-C----CCCCchhhH
Q psy13192 211 FGGSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAY--NLLEEISRGGM-V----DSSFQSLGC 271 (401)
Q Consensus 211 ~~i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~--~Ll~~i~~g~~-V----D~~~qdqll 271 (401)
..|.+...-.. +-.=.+.++| +.++..+|++++.|.+ .|...+...-+ + ........+
T Consensus 163 GeV~~~i~p~~---l~pi~l~e~G~i~~irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~~~~~~s~G~gi 239 (343)
T PRK04204 163 GEVALEVEPSK---LRPLELLERGELLRIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEELSRGLGPGSGI 239 (343)
T ss_pred eEEEEEEccCC---ccceeeccCCCcEEEEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEeeccCCCCCceEE
Confidence 66666664311 1111122222 2345778888844443 22221111000 0 111224444
Q ss_pred HHHHhcCCCc--ceEEecC--CChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCCChh
Q psy13192 272 LYMALHQKDV--SQLLIGP--LSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPY 347 (401)
Q Consensus 272 ~~mALa~~g~--S~i~~g~--lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~~~~ 347 (401)
++.|-.. +. +.-..|+ .+.+.+ .-+..++++.. ++ .+++++..+|-.-+-||++... +++++.+++|++
T Consensus 240 ~L~aet~-g~~~~~~~lg~~g~~aE~v-g~~aa~~Ll~~---i~-~gg~vD~~lqdqll~~mALa~g-~S~i~~~~lT~h 312 (343)
T PRK04204 240 VLWAESE-HITEGFDALGERGKPAEVV-GEEAAEELLRY---LA-SGAAVDEHLADQLILPMALAGG-EGSFTVAELTSH 312 (343)
T ss_pred EEEEEEC-CEEEEEEecCCCCCCHHHH-HHHHHHHHHHH---Hh-cCCccChhHHHHHHHHHHhCCC-CceEEecCCCHH
Confidence 4444432 11 1111221 233322 23333333211 22 5778888888888889999988 999999999999
Q ss_pred HHHHHHHHHHhhcceEEeeecCC
Q psy13192 348 TVQFLRHLKQFFGLKFKLERESE 370 (401)
Q Consensus 348 ~~~~lr~~~~~~g~~f~~~~~~~ 370 (401)
++..+|++|+|||++|++++.++
T Consensus 313 ~~t~l~vi~~f~~v~f~v~~~~~ 335 (343)
T PRK04204 313 LLTNIWVVEKFLPVKFEVEEYDG 335 (343)
T ss_pred HHHHHHHHHHhcCcEEEEEEcCC
Confidence 99999999999999999987553
No 16
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=99.15 E-value=1.9e-10 Score=114.49 Aligned_cols=277 Identities=19% Similarity=0.183 Sum_probs=172.7
Q ss_pred hhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeec-----ccC--CCCcEEEE
Q psy13192 67 YYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRG-----MEP--EGGGEIYF 139 (401)
Q Consensus 67 l~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rG-----f~P--~GGGeV~~ 139 (401)
=+|...|.++..+++|++| ..++.+...|++......++.+++++. |+ +++-...| |+| .-||.+.+
T Consensus 11 QilR~alaLS~ltg~pv~I--~nIR~~r~~PGL~~qh~~~l~ll~~i~---~g-~~~g~~~gst~l~f~Pg~i~gG~~~~ 84 (326)
T cd00874 11 QILRTALALSAVTGKPVRI--VNIRANRSNPGLSRQHLTAVRAAARIC---NA-EVEGAELGSTELEFEPGKIKGGDYEF 84 (326)
T ss_pred HHHHHHHHHHHHhCCCEEE--EEeccCCCCCCchHHHHHHHHHHHHHc---CC-eEeeeecCceEEEEECCCccCCcEEE
Confidence 4678889999999999998 667766667999999999999999986 22 23333333 467 45899999
Q ss_pred EeeCCCC----Ccce---EeccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCce
Q psy13192 140 NCPIIKS----IKPV---QSKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGF 211 (401)
Q Consensus 140 ~~~p~~~----L~~i---~l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~ 211 (401)
+|....+ |+++ .+-..+.+ .+++|.+.+...|+ .+-+.......|++++.++++.+. +++-. +..|.
T Consensus 85 d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPs--vD~~~~v~lP~l~~~G~~~~l~v~-rRG~y--P~GgG 159 (326)
T cd00874 85 DIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPP--IDYLRNVTLPLLERMGIEAELEVL-RRGFY--PRGGG 159 (326)
T ss_pred eCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCC--HHHHHHHHHHHHHhCCCcEEEEEE-eCCcC--CCCCE
Confidence 9988664 2332 22233333 57999998876666 355555666677888877666543 34432 33466
Q ss_pred EEEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHH-HhcCCC--CCC---CCchhhHHH
Q psy13192 212 GGSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEE-ISRGGM--VDS---SFQSLGCLY 273 (401)
Q Consensus 212 ~i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~-i~~g~~--VD~---~~qdqll~~ 273 (401)
.|.+..+-.... -.-.+.++| +.++..+|++.+.| ++.|+. ....-. .|. ......+.+
T Consensus 160 eV~~~v~p~~~l--~~i~l~~~g~i~~irg~~~~~~l~~~va~r~~~~a-~~~L~~~~~~dv~i~~~~~~~~s~G~~i~L 236 (326)
T cd00874 160 EVVLTVEPSKLL--PPLLLEERGEIEKIRGISHAANLPPHVAERQAEAA-AALLRKALGLQIEIEPEDQSALGPGSGIVL 236 (326)
T ss_pred EEEEEEecccCC--CcceeecCCCeEEEEEEEEEccCCHHHHHHHHHHH-HHHHhhccCCCeEEEEEecCCCCCCEEEEE
Confidence 666666532110 011111222 23457789999544 444443 111111 111 233555555
Q ss_pred HHhcCCCcceE---EecC--CChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCCChhH
Q psy13192 274 MALHQKDVSQL---LIGP--LSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYT 348 (401)
Q Consensus 274 mALa~~g~S~i---~~g~--lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~~~~~ 348 (401)
.|-.. . ..+ ..|+ .+...+ .-+.+++++.. ++ .+++++-.+|-.-+-||++.+ +++++.|++|+++
T Consensus 237 ~aet~-~-~~~~~~~lg~~g~~aE~v-g~~aa~~Ll~~---i~-~gg~vD~~lqdqlll~mALa~--~s~i~~~~lT~h~ 307 (326)
T cd00874 237 WAEYE-H-SRLGFSALGKKGVPAEKV-GEEAAEELLAY---LS-SGAAVDEHLADQLIPFMALAG--GSEFRTGELTLHL 307 (326)
T ss_pred EEEEC-c-EEEEEEEcCCCCCCHHHH-HHHHHHHHHHH---Hh-cCCccChhHHHHHHHHHHhcC--CceEEecCCCHHH
Confidence 55442 1 222 1121 222222 22333333211 22 577888888888888999987 9999999999999
Q ss_pred HHHHHHHHHhhcceEEee
Q psy13192 349 VQFLRHLKQFFGLKFKLE 366 (401)
Q Consensus 349 ~~~lr~~~~~~g~~f~~~ 366 (401)
+.++|++|+|||++|+++
T Consensus 308 ~t~l~vi~~f~~v~f~i~ 325 (326)
T cd00874 308 QTNIWVIEKFLGVKFRIE 325 (326)
T ss_pred HHHHHHHHHhcCcEEEEe
Confidence 999999999999999995
No 17
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=99.05 E-value=4.3e-10 Score=106.60 Aligned_cols=202 Identities=25% Similarity=0.321 Sum_probs=133.4
Q ss_pred hHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecc----cC--CCCcEEEEEe
Q psy13192 68 YLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGM----EP--EGGGEIYFNC 141 (401)
Q Consensus 68 ~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf----~P--~GGGeV~~~~ 141 (401)
+|...|.++.++++|++| ..++.+...|++......++.+++++. |+....++..|. .| .-||.++++|
T Consensus 12 ~lR~~laLS~l~gkpi~I--~~IR~~r~~PGL~~qh~~~l~ll~~it---~g~~~g~~~~st~l~f~Pg~i~~g~~~~d~ 86 (228)
T PF01137_consen 12 ILRTALALSALTGKPIRI--ENIRANRPNPGLRPQHLSALRLLAKIT---NGSVIGISLGSTELTFRPGEIRGGDYTFDC 86 (228)
T ss_dssp CHHHHHHHHHHHT--EEE--ESTTTTSSS-S--HHHHHHHHHHHHHC---CSEEEEESTTSSEEEEE--EE-ECEEEEEE
T ss_pred HHHHHHHHHhccCCCEEE--EEEecCCCCCcccHHHHHHHHHHHHhc---CCeecceecCCcEEEEECCCccCCcEEEec
Confidence 577888999999999998 999999999999999999999999997 556666766655 47 5567999999
Q ss_pred eCCCC----CcceEec---cCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEE
Q psy13192 142 PIIKS----IKPVQSK---DMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGG 213 (401)
Q Consensus 142 ~p~~~----L~~i~l~---~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i 213 (401)
...++ |+++... ..+.+ ..++|.+.+...|+ .+-+.......|++++.+..+.+. +++. .+..|..|
T Consensus 87 ~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~ps--vd~~~~v~lP~l~~~G~~~~l~i~-krG~--~P~GgGeV 161 (228)
T PF01137_consen 87 GTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPS--VDYIRQVFLPLLRKFGIPVELKII-KRGF--YPKGGGEV 161 (228)
T ss_dssp ETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS----HHHHHHTCHHHHHHCT-ECEEEEE-E--B--TTTB-EEE
T ss_pred CCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCC--HHHHHHHHHHHHHHcCCCcEEEEE-Eecc--CCCCCeEE
Confidence 88764 3333322 23333 47899888876666 455555566677888877775543 3332 12235555
Q ss_pred EEEEEecCceEEeeeeccCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHH
Q psy13192 214 SIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYT 293 (401)
Q Consensus 214 ~L~aet~~g~~~g~~~l~~~g~~~~~~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~ 293 (401)
.+..+.... -.+++ +.++.|.
T Consensus 162 ~~~v~p~~~------------------------------------l~~i~-----------------------g~vD~~~ 182 (228)
T PF01137_consen 162 QLRVPPVKP------------------------------------LKPID-----------------------GCVDEHL 182 (228)
T ss_dssp EEEEE-SSS---------------------------------------EE-----------------------CSS-HHH
T ss_pred EEEEEcccc------------------------------------ccccc-----------------------hhhhhhh
Confidence 555542211 02333 4455555
Q ss_pred HHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCCChhHHHHHHHHHHhhcceEEee
Q psy13192 294 VQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 366 (401)
Q Consensus 294 ~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~~~~~~~~lr~~~~~~g~~f~~~ 366 (401)
.-.+ +-||++.+.|++++++|++|++++.+||++|+|||++|+++
T Consensus 183 qdql----------------------------l~~mALa~g~vS~i~~g~lt~h~~t~l~vi~~fl~v~f~v~ 227 (228)
T PF01137_consen 183 QDQL----------------------------LLFMALAKGDVSRIRVGPLTLHTVTNLRVIEQFLGVKFKVE 227 (228)
T ss_dssp HHHH----------------------------HHHHHCCTSSEEEEEESCSSHHHHHHHHHHHHHCS-EEEE-
T ss_pred HHHH----------------------------HHHHHhCCCCceEEEecCCCHHHHHHHHHHHHHcCcEEEEe
Confidence 4432 23788888899999999999999999999999999999996
No 18
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=99.01 E-value=1.4e-09 Score=108.20 Aligned_cols=280 Identities=15% Similarity=0.107 Sum_probs=172.7
Q ss_pred hhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeec----ccC--CCCcEEEE
Q psy13192 66 GYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRG----MEP--EGGGEIYF 139 (401)
Q Consensus 66 sl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rG----f~P--~GGGeV~~ 139 (401)
+=+|...|.++..+++|++| +.++.+...|++......++.+++++. |+-...+...+ |+| .-||++.+
T Consensus 12 GQilR~alaLS~ltgkpv~I--~nIR~~R~~PGL~~qhl~~l~l~~~i~---~a~~~g~~~gst~l~F~Pg~i~gG~~~~ 86 (326)
T TIGR03399 12 GQILRTALSLSALTGKPVRI--YNIRANRPKPGLAPQHLTAVKAAAEIC---NAEVEGAELGSTELEFIPGKIRGGDYRF 86 (326)
T ss_pred HHHHHHHHHHHHhhCCCEEE--EEeccCCCCCCchHHHHHHHHHHHHHc---CCeEeeeecCceEEEEECCCccCCeEEE
Confidence 45788899999999999999 666666667999999999999999986 33333343333 467 45899999
Q ss_pred EeeCCCC----CcceE---eccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCce
Q psy13192 140 NCPIIKS----IKPVQ---SKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGF 211 (401)
Q Consensus 140 ~~~p~~~----L~~i~---l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~ 211 (401)
+|....+ |+++. +-..+++ ..++|.+.++..|+ .+-+.......|++++.++++.+. +++-. +..|.
T Consensus 87 d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPs--vDy~~~v~lP~l~~~G~~~~l~v~-rRG~y--P~GGG 161 (326)
T TIGR03399 87 DIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPP--VDYLRNVFLPLLERMGIRAELELL-RRGFY--PRGGG 161 (326)
T ss_pred eCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCC--HHHHHHHHHHHHHhCCCcEEEEEE-eCCcC--CCCCE
Confidence 9988654 23322 2223333 57999998877666 455556666677888887666553 34432 33456
Q ss_pred EEEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhc-CCCCCC----CCchhhHHHH
Q psy13192 212 GGSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISR-GGMVDS----SFQSLGCLYM 274 (401)
Q Consensus 212 ~i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~-g~~VD~----~~qdqll~~m 274 (401)
.|.+..+-.... -.. .+.++| +.++..+|++++.|.+.|.+.+.. .-.+|. ......+++.
T Consensus 162 eV~~~i~p~~~l-~~i-~l~~~G~i~~i~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~~~~~s~G~~i~L~ 239 (326)
T TIGR03399 162 EVRLRVEPVKKL-KPL-ELEERGELLRVSGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVLDKGLGPGSGIVLW 239 (326)
T ss_pred EEEEEEccccCC-Cce-eeecCCceEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccCCCCCcEEEEEE
Confidence 666665532110 011 122222 234567888885444444333211 001122 2234555555
Q ss_pred HhcCCCc--ceEEecC--CChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCCChhHHH
Q psy13192 275 ALHQKDV--SQLLIGP--LSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQ 350 (401)
Q Consensus 275 ALa~~g~--S~i~~g~--lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~~~~~~~ 350 (401)
|-.. +. +.-.+|+ .+... ..-+.+++++.. ++ .+++++..+|-.-+-||++... +++++.+++|++++.
T Consensus 240 aet~-g~~~~~~~lg~~g~~aE~-vg~~aa~~L~~~---i~-~g~~vD~~lqdqlll~mALa~g-~S~i~~~~lT~h~~t 312 (326)
T TIGR03399 240 AETE-HCRLGFSALGEKGKSAEK-VGEEAAEQLLAE---LR-SGAAVDEHLADQLILYMALASG-ESRFTTSELTMHLRT 312 (326)
T ss_pred EEEC-CeEEEEEecCCCCCCHHH-HHHHHHHHHHHH---HH-cCCccChhHHHHHHHHHHhcCC-CceEEecCCCHHHHH
Confidence 5432 11 1111221 22222 223334443211 22 4678887777788889999877 999999999999999
Q ss_pred HHHHHHHhhcceEE
Q psy13192 351 FLRHLKQFFGLKFK 364 (401)
Q Consensus 351 ~lr~~~~~~g~~f~ 364 (401)
.+|++++|||++|.
T Consensus 313 ~l~v~~~f~~v~f~ 326 (326)
T TIGR03399 313 NIWVIEQFLPVRFE 326 (326)
T ss_pred HHHHHHHHhCCeeC
Confidence 99999999999983
No 19
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=98.91 E-value=6.2e-09 Score=104.23 Aligned_cols=283 Identities=18% Similarity=0.138 Sum_probs=171.0
Q ss_pred hhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeec----ccC--CCCcEEEEE
Q psy13192 67 YYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRG----MEP--EGGGEIYFN 140 (401)
Q Consensus 67 l~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rG----f~P--~GGGeV~~~ 140 (401)
=+|.+.|.+++.+++|++| ..++.+...|++......++.+++++. ++-...++..| |+| .-||.+.++
T Consensus 11 QilR~alaLS~ltgkpvrI--~nIR~~r~~PGL~~qhl~~l~ll~~i~---~g~~~g~~~gst~l~F~Pg~i~gG~~~~d 85 (338)
T cd00295 11 EILRHALSLAMISGQPFRI--EGIRADEADPGLKDQHLSALKAAEEIC---GASVEEAELGGQRFIFRPGNIIGGDVRFA 85 (338)
T ss_pred HHHHHHHHHHHhhCCCEEE--EEeccCCCCCCcHHHHHHHHHHHHHhc---CCeEeeeecCceEEEEECCcccCCeEEEe
Confidence 3678899999999999999 666666678999999999999999986 44555555555 367 458999999
Q ss_pred eeCCCC----Ccc---eEeccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceE
Q psy13192 141 CPIIKS----IKP---VQSKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFG 212 (401)
Q Consensus 141 ~~p~~~----L~~---i~l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~ 212 (401)
|....+ |++ +.+-..+++ .+++|.+.++..|+ .+-+.......|++++.+.++... +++.. +.++|..
T Consensus 86 ~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPs--vD~~~~v~lp~l~~~G~~~~~~~~-r~g~~-p~ggG~~ 161 (338)
T cd00295 86 CGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIG--ADFIRRSLEPLLAKIFIHGDELEL-RHGFR-GAAGGGG 161 (338)
T ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCC--HHHHHHHHHHHHHHhCCcccceEE-EEEEe-cCCCCeE
Confidence 987664 233 333334444 47999998877676 355555566677777766544322 22211 2233332
Q ss_pred EEEEEEe--cCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhcCCC--CCCC-------Cchh
Q psy13192 213 GSIYAES--STGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISRGGM--VDSS-------FQSL 269 (401)
Q Consensus 213 i~L~aet--~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~g~~--VD~~-------~qdq 269 (401)
...+-.. -....+. ..+.++| +.++..+|++++.|.+. ++....... +|.+ ....
T Consensus 162 ~~~~~p~~~~~~l~~~-~~l~~~G~~~~irg~~~~~~l~~~va~R~~~~a~~~-l~~~~~dv~i~~~~~~~~~~~~s~G~ 239 (338)
T cd00295 162 AEENFLCASFKELLLG-ERGSEFGRQFRGEGIAAGTRVPPAFAEREIASAAGS-FNLFEPDIFILPDDQRGDECGNGPGN 239 (338)
T ss_pred EEEEeccCcccccccc-hhhccCCceEEEEEEEEEccCCHHHHHHHHHHHHHH-hcccCCceEEEEeccccccCCCCCCe
Confidence 2222211 1111000 1111122 23457789998555444 433221111 1211 2245
Q ss_pred hHHHHHhcCCCcceE---EecC--CChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCC
Q psy13192 270 GCLYMALHQKDVSQL---LIGP--LSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPL 344 (401)
Q Consensus 270 ll~~mALa~~g~S~i---~~g~--lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~ 344 (401)
.+++.|-...+ ..+ ..|+ .+...+ .-+.+++++.. +. .+++++..+|-.-+-||++..+|+++.+.++.
T Consensus 240 gi~L~aet~~g-~~~~~~~lg~~g~~aE~v-g~~aa~~L~~~---i~-~gg~vD~~lqdqlll~mALa~g~~~~~~~~~t 313 (338)
T cd00295 240 SISLEAESEKG-CSEAAEHCGEAGESAEDV-AAFCAKELKEV---IA-SGAAVDEYLADQLLLGMALAGEAGEFIVAGPL 313 (338)
T ss_pred EEEEEEEECCC-EEEEEEEcCCCCCCHHHH-HHHHHHHHHHH---Hh-cCCccchhHHHHHHHHHHhcCCCccEEecccc
Confidence 55555544321 111 1222 222222 23333333221 22 57888888888888899999989998888888
Q ss_pred --ChhHHHHHHHHHHhhcceEEee
Q psy13192 345 --SPYTVQFLRHLKQFFGLKFKLE 366 (401)
Q Consensus 345 --~~~~~~~lr~~~~~~g~~f~~~ 366 (401)
++++++++|+||+|||++|+++
T Consensus 314 ~H~~~~t~~~~~~~~f~~~~f~i~ 337 (338)
T cd00295 314 CHLLQLTNFARDVEAFFNCEFRFI 337 (338)
T ss_pred ccchhHHHHHHHHHHhcCcEEEEE
Confidence 5677999999999999999997
No 20
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=97.89 E-value=0.00023 Score=70.51 Aligned_cols=276 Identities=17% Similarity=0.188 Sum_probs=167.4
Q ss_pred hhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeec-----ccC--CCCcEEEE
Q psy13192 67 YYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRG-----MEP--EGGGEIYF 139 (401)
Q Consensus 67 l~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rG-----f~P--~GGGeV~~ 139 (401)
=+|.+.|-+++.+++|++| .+|+...-.|.+-...-.++.+++++- |+ +++=..-| |.| .-||...+
T Consensus 15 QilRtal~LS~ltG~pvrI--~nIRa~R~~PGL~~QHltaVra~~~i~---~a-~v~G~e~GS~~l~F~Pg~i~gG~~~~ 88 (341)
T COG0430 15 QILRTALALSALTGKPVRI--ENIRAGRANPGLKRQHLTAVRAAAEIC---NA-EVEGAELGSTELVFRPGKIRGGDYRV 88 (341)
T ss_pred eeehHHHHHHHhcCCceEE--EEEccCCCCCCcHHHHHHHHHHHHHhc---CC-eEeeeeccceEEEEeccceeCceEEE
Confidence 4688999999999999998 999999999999999999999999984 22 22211222 346 66778999
Q ss_pred EeeCCCC----Ccc---eEeccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCce
Q psy13192 140 NCPIIKS----IKP---VQSKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGF 211 (401)
Q Consensus 140 ~~~p~~~----L~~---i~l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~ 211 (401)
.|....+ |+| ..+-..+++ .+++|.+.+...|+ ++-+...-...|.+.+.+..+.+. +++. -+..|.
T Consensus 89 digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~--vDyir~v~lp~L~k~G~~~~l~vl-kRG~--yP~GGG 163 (341)
T COG0430 89 DIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPP--VDYIRRVTLPVLRKMGIECELEVL-KRGF--YPRGGG 163 (341)
T ss_pred EecCCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCC--cchhhhhHHHHHHhhccceEEEEE-eccc--CCCCCc
Confidence 9876443 233 333334554 47999999988888 344444455566777777777654 4443 234567
Q ss_pred EEEEEEEecCc-eEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhcCCC--CCCC----CchhhHH
Q psy13192 212 GGSIYAESSTG-VVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISRGGM--VDSS----FQSLGCL 272 (401)
Q Consensus 212 ~i~L~aet~~g-~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~g~~--VD~~----~qdqll~ 272 (401)
.+.+..+.... +.+ .+.+++ +.++..||+.+ ++|+++|+...-..- .|.+ .....++
T Consensus 164 eV~~~V~p~~~~~~l---~l~e~g~i~~v~Gia~~~~lp~hvAeRqa-~~A~~~L~~~~~~v~i~~~~~~~~~spG~gI~ 239 (341)
T COG0430 164 EVLLTVEPPKEKLPL---HLTERGEIEKVRGIAHSTNLPPHVAERQA-EAAKELLGKLGLEVEIYTEVRRGGLSPGSGIV 239 (341)
T ss_pred EEEEEEcCccccCce---eeecccceeEEEEEEEeccCCcHHHHHHH-HHHHHHhhhccCCceEEEeecccCCCCCceEE
Confidence 77777765332 211 122222 24567899999 555555543322111 1221 2345555
Q ss_pred HHHhcCCCcceEE---ecC--CChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeecCCChh
Q psy13192 273 YMALHQKDVSQLL---IGP--LSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPY 347 (401)
Q Consensus 273 ~mALa~~g~S~i~---~g~--lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~~~~~~ 347 (401)
++|-+. + +.+. +|+ .+.. +.+-..+++.+.. ++ .+.+++....-.-+-||.+.. +|++.+..+|..
T Consensus 240 L~ae~~-~-~~~g~~~lGe~G~~aE-~Vg~~aa~~Ll~~---l~-sgaavD~hlaDqli~~malag--~g~~~v~e~t~H 310 (341)
T COG0430 240 LWAESE-G-SRIGADALGEKGKSAE-VVGEEAAKELLRE---LE-SGAAVDEHLADQLIPYMALAG--IGEFTVAEVTSH 310 (341)
T ss_pred EEEeec-C-ceeehhhcccCCCCHH-HHHHHHHHHHHHH---hh-cCCccchhhhhhhhhHHhhcc--CceEEeeeeehh
Confidence 565542 1 1111 121 2222 2223344443321 21 123333222233445777766 899999999999
Q ss_pred HHHHHHHHHHhhcceEEee
Q psy13192 348 TVQFLRHLKQFFGLKFKLE 366 (401)
Q Consensus 348 ~~~~lr~~~~~~g~~f~~~ 366 (401)
+---++-|+.|++++|.++
T Consensus 311 l~tni~vie~Fl~~~~~~~ 329 (341)
T COG0430 311 LLTNIWVIERFLGVEFEVE 329 (341)
T ss_pred hhhhHHHHHHhcCeeEEee
Confidence 8888888999999999854
No 21
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=79.96 E-value=17 Score=33.74 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=69.9
Q ss_pred HhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhc-CCCCC-----ceEEEEeeecccCCCCcEEEEEeeCCC
Q psy13192 72 CLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQF-LVVDP-----GIELIIKKRGMEPEGGGEIYFNCPIIK 145 (401)
Q Consensus 72 lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~-G~~~~-----~~~i~i~~rGf~P~GGGeV~~~~~p~~ 145 (401)
.|-++..++++++| +++..++..|++.--...++.+|++| |..-. +-.+.+. .| ..-|+.+.+.+.+..
T Consensus 16 ~lala~l~g~~i~I--~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~-p~--~l~g~~i~~~~~s~g 90 (211)
T cd01553 16 FLVLAAISGGPITV--TGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFR-PG--TVRGGDVRFAIGSAG 90 (211)
T ss_pred HHHHHHHcCCCEEE--EEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEe-CC--CccceEEEeccCCcc
Confidence 45555566777555 88888888899998899999999999 86410 0112221 11 134678888876643
Q ss_pred ----CCcceE---eccCCceeEEEEEEEeccc--ChHHHHHHHHHHHHHhhhcCCCeeEEee
Q psy13192 146 ----SIKPVQ---SKDMGKIKRIRGTVFALRV--SPAIANRIVDTAKGILLSYLPDVYLSVD 198 (401)
Q Consensus 146 ----~L~~i~---l~~~G~i~~IrGi~~~~~l--~~~ia~r~~~~ar~~L~~~~~~v~i~~d 198 (401)
-++++. +...|+ .+|++.... +. +++ .+....+....|++++.++++..+
T Consensus 91 ~~~d~~~~l~~la~~a~g~-s~i~~~g~t-r~~~~~~-e~~r~~~~~~~L~k~G~~~~~~~~ 149 (211)
T cd01553 91 SCTDVLQTILPLLLFAKGP-TRLTVTGGT-DNPSAPP-ADFIRFVLEPELAKIGAHQEETLL 149 (211)
T ss_pred cHHHHHHHHHHHHHhCCCC-EEEEEeccc-CCCCCCC-HHHHHHHHHHHHHHcCCcceeeee
Confidence 122222 223444 346666553 22 222 233455566788888877765433
No 22
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=69.28 E-value=16 Score=37.26 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCeeeeeeccceEEEEE-CCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCC
Q psy13192 20 NLLRLIDKLTNGTTLEVNETGTTLVFQ-PGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPS 98 (401)
Q Consensus 20 ~~l~ll~~it~g~~~~~~~~st~l~F~-PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs 98 (401)
..++.+.++ ++++ ....+ .+... .|.++++++.+++.+.+.++. +|..+++++++++| ++. ...|.
T Consensus 125 ~~i~~L~~~-G~~v-~~~~~--~~~v~~~~~l~~~~~~l~~~~s~~~~~----ll~aa~~~~~~~~i--~~~---~~~~~ 191 (416)
T TIGR01072 125 LHLKGLKAL-GAEI-VIEDG--YVYASAKGRLVGAHIVLDKVSVGATEN----IIMAAVLAEGTTVI--ENA---AREPE 191 (416)
T ss_pred HHHHHHHHC-CCEE-EEECC--EEEEEecCcceeeEEecCCCCHHHHHH----HHHHHHhCCCcEEE--ecC---CcCcC
Confidence 345666665 2333 22222 23333 356788888888754444443 35555578888776 432 22343
Q ss_pred HHHHHHhhHHHHhhcCCC
Q psy13192 99 VDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 99 ~dy~~~v~lplL~k~G~~ 116 (401)
++ .++..|++||++
T Consensus 192 ---i~-~~~~~L~~~G~~ 205 (416)
T TIGR01072 192 ---IV-DLCEFLNKMGAK 205 (416)
T ss_pred ---HH-HHHHHHHHCCCE
Confidence 33 478999999965
No 23
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=65.32 E-value=36 Score=34.75 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=38.1
Q ss_pred EEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 42 TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 42 ~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.+...++.++++++.+|+++++.+ .. ++..++++++++.+ ++ ....|.++.+ +..|++||++
T Consensus 143 ~i~v~~~~l~~~~~~ld~~ss~~~---~~-ll~a~~~~~g~~~i--~~---~~~~~~i~~l----~~~L~~~G~~ 204 (417)
T PRK12830 143 AIYLKADELKGAHIYLDVVSVGAT---IN-IMLAAVKAKGRTVI--EN---AAKEPEIIDV----ATLLNNMGAN 204 (417)
T ss_pred EEEEEeCCccCCEEECCCCCHHHH---HH-HHHHHHcCCCeEEE--cc---CCcCCcHHHH----HHHHHHCCCE
Confidence 455566567888899998544322 22 44455577777755 33 3334544443 5689999965
No 24
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=59.80 E-value=23 Score=36.15 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=43.9
Q ss_pred EEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
++..||....|++++ .||.++ ...+|.++++++++++| +|. |..+|++ +++..|++||+.
T Consensus 4 ~~i~~~~~~~G~v~v----pgsKSs-~~~ll~aa~la~g~s~i-----~n~---~~~~dv~-~t~~~l~~lG~~ 63 (417)
T PRK12830 4 IVINGGKPLSGEVTI----SGAKNS-AVALIPAAILADGPVTL-----DGV---PDISDVH-SLVDILEELGGK 63 (417)
T ss_pred EEEeCCCcceEEEEc----cCcHHH-HHHHHHHHHhcCCeEEE-----eCC---CCcHHHH-HHHHHHHHCCCE
Confidence 555787777776654 356664 57888888899999876 333 6667766 789999999964
No 25
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=58.33 E-value=76 Score=32.09 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=36.4
Q ss_pred ECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 46 QPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 46 ~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.+|.++++++.+++++.+..+.+ +..+++++++++| .+. ...| |+. .++..|++||++
T Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~l----l~aa~~~~g~~~i--~~~---~~~~---~i~-~~~~~L~~~G~~ 195 (400)
T cd01555 138 AAGRLKGARIYLDFPSVGATENI----MMAAVLAEGTTVI--ENA---AREP---EIV-DLANFLNKMGAK 195 (400)
T ss_pred cCCCccceEEECCCCCHHHHHHH----HHHHHhCCCeEEE--ecc---cCCc---cHH-HHHHHHHHCCCE
Confidence 45678888888887655444333 2334667888766 443 2233 333 368899999964
No 26
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=58.02 E-value=1.1e+02 Score=31.23 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCH
Q psy13192 20 NLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSV 99 (401)
Q Consensus 20 ~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~ 99 (401)
..++.+.++ ++++. ...+...++ .+|.++++++.+++++++. ... +|..+++++++++| ++ .. +-
T Consensus 126 ~~~~~L~~l-Ga~v~-~~~~~~~v~-~~g~l~~~~~~l~~~ss~~---~~~-ll~aa~~~~g~~~i--~~---~~---~~ 190 (417)
T PRK09369 126 LHLKGLEAL-GAEIE-IEHGYVEAK-ADGRLKGAHIVLDFPSVGA---TEN-ILMAAVLAEGTTVI--EN---AA---RE 190 (417)
T ss_pred HHHHHHHHC-CCEEE-EECCEEEEE-ecCCcccceEeCCCCCHHH---HHH-HHHHHHhCCCcEEE--eC---CC---cC
Confidence 345666666 34443 222323333 2477888899888754442 222 23344667888876 43 22 23
Q ss_pred HHHHHhhHHHHhhcCCC
Q psy13192 100 DSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 100 dy~~~v~lplL~k~G~~ 116 (401)
+|++ .++-.|++||++
T Consensus 191 ~~i~-~~~~~L~~~G~~ 206 (417)
T PRK09369 191 PEIV-DLANFLNKMGAK 206 (417)
T ss_pred CcHH-HHHHHHHHCCCE
Confidence 3444 578899999965
No 27
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=56.46 E-value=1.6e+02 Score=29.58 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCeeeeeeccceEEEEECCcccce--eEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCC
Q psy13192 20 NLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGG--LIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDP 97 (401)
Q Consensus 20 ~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg--~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sP 97 (401)
..++++.++ ++++.. .+..++-.|+...+. ...++++.+|+.+. .+++++..++. +++++|+-+- .++
T Consensus 41 ~~~~~L~~l-G~~i~~---~~~~~~i~g~~~~~~~~~~~i~~~~s~~s~~---~l~~l~~~~~~--~~~i~g~~~l-~~~ 110 (409)
T cd01556 41 ATLEALRAL-GAKIEE---EGGTVEIVGGGGLGLPPEAVLDCGNSGTTMR---LLTGLLALQGG--DSVLTGDESL-RKR 110 (409)
T ss_pred HHHHHHHHc-CCeEEe---cCCEEEEEcCCCCCCCCCceEEcCCchHHHH---HHHHHHHcCCC--eEEEECCccc-ccC
Confidence 445555554 444432 224577777654443 55778776665444 45555555544 5556876332 233
Q ss_pred CHHHHHHhhHHHHhhcCCC
Q psy13192 98 SVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 98 s~dy~~~v~lplL~k~G~~ 116 (401)
++ ..++-.|++||++
T Consensus 111 ~~----~~~~~~L~~lGa~ 125 (409)
T cd01556 111 PM----GRLVDALRQLGAE 125 (409)
T ss_pred Ch----HHHHHHHHHCCCE
Confidence 33 3456778999954
No 28
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=56.34 E-value=35 Score=34.78 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=44.0
Q ss_pred eEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 41 TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 41 t~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+.++..||....|+++++ ||-|+ .+.+|.++++++++++|+ | .|..+|+ ...+-.|++||+.
T Consensus 2 ~~~~v~~~~~~~g~i~~p----~skS~-~~r~l~~a~la~g~~~i~-----~---~~~~~d~-~~~~~~l~~lG~~ 63 (416)
T TIGR01072 2 DKLVVEGGKPLSGEVTIS----GAKNA-ALPIIAATLLTDEPVTLT-----N---VPDLSDV-KTTLDLLRNLGAR 63 (416)
T ss_pred ceEEEeCCCCcEEEEEcC----CcHHH-HHHHHHHHHhCCCcEEEe-----C---CCchHHH-HHHHHHHHHCCCE
Confidence 356667877677766543 34444 478888999999999884 2 3455664 5889999999964
No 29
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=53.12 E-value=1.3e+02 Score=30.20 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhhCCeeeeeeccceEE-EEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCC
Q psy13192 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTL-VFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNN 93 (401)
Q Consensus 15 ~~qhl~~l~ll~~it~g~~~~~~~~st~l-~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~ 93 (401)
++. ...+++|.++ ++++...+ ....+ .-.++.+.++++.++++. -+-++-+++.++++++++++| ++. +.
T Consensus 110 ~~~-~~~~~~L~~l-Ga~i~~~~-~~~~~~i~~~~~~~~~~~~i~~~~---ss~~~~~ll~aa~l~~g~~~i--~~~-~~ 180 (409)
T cd01556 110 RPM-GRLVDALRQL-GAEIEGRE-GGGYPPLIGGGGLKGGEVEIPGAV---SSQFKSALLLAAPLAEGPTTI--IIG-EL 180 (409)
T ss_pred CCh-HHHHHHHHHC-CCEEEeCC-CCCCCCeeecCCCCCcEEEeCCCC---ccHHHHHHHHHHhcCCCceEE--Eee-CC
Confidence 444 4556666666 45443222 22111 134677888888888762 122344666666777877776 554 32
Q ss_pred CCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 94 QKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 94 ~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
...| |+ ..++..|++||++
T Consensus 181 ~~~~---~i-~~~~~~L~~lGa~ 199 (409)
T cd01556 181 ESKP---YI-DHTERMLRAFGAE 199 (409)
T ss_pred CCcC---HH-HHHHHHHHHcCCc
Confidence 2333 33 3678899999965
No 30
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=52.37 E-value=40 Score=34.53 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=44.0
Q ss_pred EEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+...|+...+|+++. .||-++ .+.+|.++++++++++| +|. |..+|++ ..+..|+.||+.
T Consensus 4 ~~i~~~~~~~G~i~~----pgsKS~-~~r~l~~a~la~g~s~i-----~~~---~~~~dv~-~t~~~l~~lG~~ 63 (417)
T PRK09369 4 LVIEGGKPLSGEVTI----SGAKNA-ALPILAASLLAEEPVTL-----TNV---PDLSDVR-TMIELLRSLGAK 63 (417)
T ss_pred EEEeCCCCceEEEEc----cCcHHH-HHHHHHHHHhCCCCEEE-----ecC---CCcHHHH-HHHHHHHHCCCE
Confidence 556776666776653 457777 78889999999999887 444 3455655 889999999953
No 31
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=48.10 E-value=81 Score=34.77 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=41.5
Q ss_pred EEEEEC-C-cccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 42 TLVFQP-G-ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 42 ~l~F~P-G-~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+++-.+ | .+..+...++|+.+|+.. .++++++.+.++++.| +|...- .+++++.+ +-.|++||+.
T Consensus 73 ~i~I~g~g~~l~~~~~~i~~g~sGtt~---r~Ll~~~al~~g~~~i--~g~~~L-~~RP~~~L----l~~L~~lGa~ 139 (661)
T PRK11860 73 TYRITGLGGQFPVKQADLFLGNAGTAM---RPLTAALALLGGEYEL--SGVPRM-HERPIGDL----VDALRQLGCD 139 (661)
T ss_pred EEEEECCCCCcCCCCceEEeCCchHHH---HHHHHHHHcCCCeEEE--ECCchh-hcCChHHH----HHHHHHCCCE
Confidence 344444 3 244566778999888774 5667777777776554 664443 35665554 5678899964
No 32
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=44.38 E-value=2.4e+02 Score=29.04 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=34.9
Q ss_pred EEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 55 IQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 55 ~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
..++|+.+|....+ ++++++....+-++++.|+-+-. +++++.+ +-.|++||+.
T Consensus 92 ~~i~~g~sgt~~r~---l~~~~~~~~~~~~~~~~g~~~l~-~Rp~~~l----~~~L~~lGa~ 145 (443)
T PLN02338 92 VELFLGNAGTAMRP---LTAAVTAAGGNASYVLDGVPRMR-ERPIGDL----VDGLKQLGAD 145 (443)
T ss_pred ceEEcCCcchHHHH---HHHHHHhCCCCceEEEECChhhc-cCCchHH----HHHHHHCCCE
Confidence 46899999977765 56655554434456668776643 4454444 4568899964
No 33
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=42.75 E-value=3.1e+02 Score=27.72 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCC--CCC
Q psy13192 19 VNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNN--QKD 96 (401)
Q Consensus 19 l~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~--~~s 96 (401)
-.+++.+.++- +.+ ....+ .+...++.+++. ++++..-...+=.+.+++.++.+++++++| +|.-+- ..+
T Consensus 255 ~~~~~~L~~~G-~~v-~~~~~--~i~v~~~~~~~~--~i~~~~~~~~~d~~p~l~~~a~~a~g~~~i--~~~~~lr~ke~ 326 (408)
T cd01554 255 TGIIDVLRAMG-AKI-EIGED--TISVESSDLKAT--EICGALIPRLIDELPIIALLALQAQGTTVI--KDAEELKVKET 326 (408)
T ss_pred hHHHHHHHHcC-CEE-EEeCC--eEEEecCCceeE--EeccccCCCCchHHHHHHHHHHcCCCcEEE--ECcccccccch
Confidence 34556665552 333 22222 355566655544 445543223444667788899999998887 554332 122
Q ss_pred CCHHHHHHhhHHHHhhcCCC
Q psy13192 97 PSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 97 Ps~dy~~~v~lplL~k~G~~ 116 (401)
+- ...+...|++||++
T Consensus 327 dr----~~~~~~~L~~~G~~ 342 (408)
T cd01554 327 DR----IFVVADELNSMGAD 342 (408)
T ss_pred hh----HHHHHHHHHHcCCE
Confidence 32 23567899999954
No 34
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.53 E-value=1.5e+02 Score=32.93 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=38.6
Q ss_pred EEEECC-cccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQPG-ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~PG-~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
++-..+ .++|++|.++. .-+.+..++|.++++++++++| + +. .+..++ +..+|++||++
T Consensus 449 i~i~g~~~l~g~~~~l~~----~ssq~~s~ll~aA~~~~g~~~i--~---~~--~~~~~~----t~~~L~~~G~~ 508 (735)
T PRK14806 449 LSIRGGQRLKGIHYDLPM----ASAQVKSCLLLAGLYAEGETSV--T---EP--APTRDH----TERMLRGFGYP 508 (735)
T ss_pred EEEECCCCccceEEeccC----chHHHHHHHHHHHhccCCceEE--e---cC--cCCHHH----HHHHHHHCCCE
Confidence 444444 47888776653 2344555678888999999987 2 22 344444 56889999965
No 35
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=42.41 E-value=1.8e+02 Score=32.17 Aligned_cols=83 Identities=17% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCeeeeeeccceEEEEEC--CcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCC
Q psy13192 20 NLLRLIDKLTNGTTLEVNETGTTLVFQP--GILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDP 97 (401)
Q Consensus 20 ~~l~ll~~it~g~~~~~~~~st~l~F~P--G~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sP 97 (401)
..++++.++ ++++. ..+.+++-.+ |.+.++.+.++|+.+|+... .+++++++.+.+++| +|+..-..=|
T Consensus 291 ~~~~aL~~l-Ga~i~---~~~~~~~I~g~~~~~~~~~~~i~~g~sGt~~r---~L~~~~a~~~g~~~i--~G~~~L~~RP 361 (673)
T PRK11861 291 VMLDALTKL-GVKLS---RDGGTCVVGGTRGAFTAKTADLFLGNAGTAVR---PLTAALAVNGGEYRI--HGVPRMHERP 361 (673)
T ss_pred HHHHHHHHc-CCeEE---ecCCEEEEEcCCCCcCCCCceEecCCcchHHH---HHHHHHHcCCCeEEE--ECChhhccCC
Confidence 445555555 33332 1222344433 34566778899998876644 455555555665555 6665554333
Q ss_pred CHHHHHHhhHHHHhhcCCC
Q psy13192 98 SVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 98 s~dy~~~v~lplL~k~G~~ 116 (401)
++.+ +-.|++||+.
T Consensus 362 -i~~l----l~~L~~lGa~ 375 (673)
T PRK11861 362 -IGDL----VDGLRQIGAR 375 (673)
T ss_pred -hhHH----HHHHHHCCCc
Confidence 3222 6678899965
No 36
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=41.34 E-value=1.7e+02 Score=29.98 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.8
Q ss_pred EEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 56 QHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 56 ~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.+|++.+|+..+ .+++++..++++ ++|+|+-.-. .+++ ..++-.|++||+.
T Consensus 86 ~i~~~~sg~~~r---~l~~laa~~~~~--~~i~g~~~l~-~r~~----~~l~~~L~~lGa~ 136 (435)
T PRK02427 86 VLDCGNSGTTMR---LLTGLLALQPGE--VVLTGDESLR-KRPM----GRLLDPLRQMGAK 136 (435)
T ss_pred EEEccCchHHHH---HHHHHHHhCCCe--EEEECChhhc-cCCh----HHHHHHHHHCCCE
Confidence 478888887666 456666666664 5557754322 2333 3455688899954
No 37
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=39.98 E-value=1.3e+02 Score=31.46 Aligned_cols=58 Identities=24% Similarity=0.226 Sum_probs=33.9
Q ss_pred ccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 50 LVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 50 i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+.+|.++++.. . -|=++=++|.++++.. +..+++.|+--.+ .| | ...++.+|++||++
T Consensus 156 ~~~~~i~i~~~--~-SSq~vsslL~~a~l~~-~~~~~~~~~~~~s-~~---y-id~T~~mL~~FGv~ 213 (428)
T COG0128 156 LKGGEVEIDGP--V-SSQQVSSLLLLAPLLA-EGTTIIVGGVLES-KP---Y-IDHTLDMLKAFGVE 213 (428)
T ss_pred CCCceEEEecc--c-hHHHHHHHHHHHhhcC-CCcEEEecCccCC-cc---H-HHHHHHHHHHcCCe
Confidence 44555666643 2 3456667777777776 3344344443332 23 3 34788999999965
No 38
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=37.03 E-value=2e+02 Score=29.68 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=40.1
Q ss_pred EEEE-CCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQ-PGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~-PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
++-. |+.+.+++|+++-. .-+=++.++|..+++++++++| ++..+....| | ...++.+|++||+.
T Consensus 157 i~i~g~~~l~~~~~~i~g~---~Ssq~~sall~aa~~~~g~~~I--~~~~~~~s~p---~-~~~tl~~L~~~G~~ 222 (443)
T PLN02338 157 VRVNAAGGLPGGKVKLSGS---ISSQYLTALLMAAPLALGDVEI--EIVDKLISVP---Y-VEMTLKLMERFGVS 222 (443)
T ss_pred EEEECCCCCCCceEEECCC---CchHHHHHHHHHHhcCCCCcEE--EECCCCCCcc---H-HHHHHHHHHHcCCe
Confidence 4444 33477787776531 2344556677777788888777 4443332233 3 33667899999964
No 39
>KOG0692|consensus
Probab=36.38 E-value=49 Score=35.14 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=51.3
Q ss_pred eCCCCcchh-hhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcE
Q psy13192 58 ECCKERGIG-YYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGE 136 (401)
Q Consensus 58 d~~tagSis-l~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGe 136 (401)
.+.++|+++ =|+-++|.+++++.+++++.+-||--.+ .| |.. ..+.+|++||++ ++-.-.-.-||=.+||.
T Consensus 263 ~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS-~p---yv~-mt~~lme~fgvn---~~~s~~~~~~y~i~g~~ 334 (595)
T KOG0692|consen 263 KVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLIS-VP---YVE-MTLKLMERFGVN---VEHSTSWDRFYVIGGQK 334 (595)
T ss_pred eeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccc-cc---chh-HHHHHHHHhCcC---eEecCCCcceEeccCcc
Confidence 345677774 5788899999999999999888876653 23 433 678899999986 44333333445566666
Q ss_pred EE
Q psy13192 137 IY 138 (401)
Q Consensus 137 V~ 138 (401)
+.
T Consensus 335 y~ 336 (595)
T KOG0692|consen 335 YK 336 (595)
T ss_pred cC
Confidence 54
No 40
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=35.97 E-value=3e+02 Score=27.82 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=33.9
Q ss_pred EEEEECCc-ccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 42 TLVFQPGI-LVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 42 ~l~F~PG~-i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.++-.|+. +++++|+++..-. | .-.++.++++++. +++|++- ..++..-+ ..++-+|++||++
T Consensus 204 ~i~I~g~~~l~~~~~~i~~D~s-s----a~~ll~aa~l~~g--~i~i~~~---~~~~~~~~--~~~~~~L~~~Ga~ 267 (409)
T TIGR01356 204 KIVVPGGQKYGPQGYDVPGDYS-S----AAFFLAAAAITGG--RVTLENL---GINPTQGD--KAIIIVLEEMGAD 267 (409)
T ss_pred EEEECCCCccCCCeeECCCCHH-H----HHHHHHHHHhcCC--EEEECCC---CCCCCCCc--HHHHHHHHHcCCe
Confidence 56556654 7888887743311 1 2233444455555 5666653 33333222 2334489999965
No 41
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=35.85 E-value=2.1e+02 Score=30.04 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=47.4
Q ss_pred EEEEECCc-ccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCce
Q psy13192 42 TLVFQPGI-LVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGI 120 (401)
Q Consensus 42 ~l~F~PG~-i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~ 120 (401)
++...||. +.+++|.+.- -+-|.+|+|=+.+.. -.++ -.+..|+..+|. +.-.+-+|++||.+ +
T Consensus 220 ~~~i~~g~~~~~~~~~Vpg-D~SSAafflaAaai~-----~~~~--~i~~~~v~~~~~----~~~~~~vl~~MGa~---i 284 (428)
T COG0128 220 RFYIPGGQKLTPGDYDVPG-DYSSAAFFLAAAAIT-----PRST--GITLKNVQPNPT----DKGILDVLEKMGAD---I 284 (428)
T ss_pred EEEECCCccccCceEEcCC-ChhhHHHHHHHHHhc-----CCCc--eeeeccCCcCcc----hhHHHHHHHHcCCe---E
Confidence 56666765 7888877653 377888887766554 2222 112233322333 44556788999954 4
Q ss_pred EEEEeeecccCCCCcEEEEEeeCCCCCcceEe
Q psy13192 121 ELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQS 152 (401)
Q Consensus 121 ~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l 152 (401)
++...+. +.+.+...|+++++
T Consensus 285 ~~~~~~~-----------l~V~~~~~l~gi~v 305 (428)
T COG0128 285 EIGDDSV-----------LRVRGSGELKGIEV 305 (428)
T ss_pred EEccCce-----------EEEeecCCccCeEe
Confidence 4443332 44444444666654
No 42
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=35.39 E-value=4e+02 Score=27.11 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=33.1
Q ss_pred cceeEEEeCCCCcchhhhHHHHhhhhcc-CCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 51 VGGLIQHECCKERGIGYYLEVCLALAPF-CKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 51 ~gg~~~~d~~tagSisl~lQ~lLplllf-a~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.++.++++++.+ +-++.++|.++++ +++++++++.+ +....| |+. .++..|++||+.
T Consensus 154 ~~~~~~i~~~~s---s~~~~~lll~aa~~~~g~~~i~~~~--~~~~rp---~i~-~~~~~L~~lG~~ 211 (435)
T PRK02427 154 KGGPIEYDGPVS---SQFVKSLLLLAPLFAEGDTETTVIE--PLPSRP---HTE-ITLRMLRAFGVE 211 (435)
T ss_pred cCccEEecCCcC---CHHHHHHHHHHhhccCCCcEEEEcC--CCCCCC---HHH-HHHHHHHHCCCe
Confidence 345566665432 3445566655555 44787776655 333344 332 556889999964
No 43
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=33.60 E-value=3.2e+02 Score=27.96 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred ccceeEEEeCCCCcchhhhHHHHhhhhc-cCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 50 LVGGLIQHECCKERGIGYYLEVCLALAP-FCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 50 i~gg~~~~d~~tagSisl~lQ~lLplll-fa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
..++.++++.. -| |=++=++|.+++ ++.. ++++++ . ...| |+ ..++.+|++||++
T Consensus 152 ~~~~~~~i~~~--~s-Sq~vs~lll~A~~~a~g--~i~i~~-~--~s~p---~i-~~t~~~L~~~G~~ 207 (419)
T PF00275_consen 152 LKGGPIEIDGD--IS-SQFVSALLLAAALLARG--EITIIN-P--ASEP---YI-DMTIDMLKKFGAK 207 (419)
T ss_dssp SSSBEEEEETS--SS-HHHHHHHHHHHHTTSBS--EEEEES-E--SSSH---HH-HHHHHHHHHTT-E
T ss_pred cccCcEEEecc--CC-CHHHHHHHHHHHHhcCC--ceEEeC-C--CCCC---cH-HHHHHHHhhceEE
Confidence 67788888764 23 333444455555 5555 676777 2 1233 44 4688999999953
No 44
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=30.59 E-value=5e+02 Score=26.22 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=35.9
Q ss_pred EEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
++-.++ ..++++.++++. | +=++-++|..++ ...+..+++.|+... +-+|++ .++..|++||++
T Consensus 133 ~~i~~~-~~~~~~~i~~~~--S-~q~~salllaa~-~~~~~~~~~~~~~~~----~~~~i~-~~l~~L~~~G~~ 196 (409)
T TIGR01356 133 LTISGP-LPGGIVYISGSA--S-SQYKSALLLAAP-ALQAVGITIVGEPLK----SRPYIE-ITLDLLGSFGVE 196 (409)
T ss_pred EEEecC-CCCCeEEeCCCc--c-hHHHHHHHHhcc-ccCCCeeEEecCCCC----CcCHHH-HHHHHHHHCCcE
Confidence 444544 556777777652 2 223334444444 355667777764333 223444 567899999964
No 45
>PLN00218 predicted protein; Provisional
Probab=25.99 E-value=39 Score=28.33 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.6
Q ss_pred CCCcchhhhHHHHhhhhccCCC
Q psy13192 60 CKERGIGYYLEVCLALAPFCKK 81 (401)
Q Consensus 60 ~tagSisl~lQ~lLplllfa~~ 81 (401)
+.-|||+|+|..+||.+-|++-
T Consensus 57 pplgsislilnvllpalgfcgf 78 (151)
T PLN00218 57 PPLGSISLILNVLLPALGFCGF 78 (151)
T ss_pred CCcchHHHHHHHHHHhhccccc
Confidence 4579999999999999999875
No 46
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.36 E-value=37 Score=36.29 Aligned_cols=49 Identities=14% Similarity=0.417 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeee------cCCChhHHH
Q psy13192 295 QFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLI------GPLSPYTVQ 350 (401)
Q Consensus 295 t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~------~~~~~~~~~ 350 (401)
-|++.+++.+||.+-|++..+.++++ | |..+.+ .|+|..| |.+.|.-|.
T Consensus 225 rnir~~e~~tgvd~iiddtp~~v~ls--~----fdp~rr-eia~~~l~~li~dgrihp~rie 279 (514)
T TIGR03319 225 RNIRALETLTGVDLIIDDTPEAVILS--G----FDPVRR-EIARMALEKLIQDGRIHPARIE 279 (514)
T ss_pred chHHHHHHHhCceEEEcCCCCeEEec--C----CchHHH-HHHHHHHHHHHHcCCCCHHHHH
Confidence 58999999999999998767778888 6 666544 4777766 999998775
No 47
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=22.54 E-value=2.7e+02 Score=22.19 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=26.1
Q ss_pred ccccceeeeeecCC-ChhHHHHHHHHHHhhcc-eEEeeecCC
Q psy13192 331 LHQKDVSQLLIGPL-SPYTVQFLRHLKQFFGL-KFKLERESE 370 (401)
Q Consensus 331 ~~~~dv~~~~~~~~-~~~~~~~lr~~~~~~g~-~f~~~~~~~ 370 (401)
..+.|+-|.++.|- +...-++...+++.|+. .|.||=.|+
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlDd 47 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYVDE 47 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEEcC
Confidence 34567888888551 22566777777777773 677776664
No 48
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=22.50 E-value=1.9e+02 Score=32.03 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=44.6
Q ss_pred eeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhh
Q psy13192 33 TLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQ 112 (401)
Q Consensus 33 ~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k 112 (401)
++..+-+-..++..|+...+|+++ +..+.|.++ ..|.++++++++++| + |. |..+++ ...+..|++
T Consensus 294 ~~~~~~~~~~~~i~~~~~~~G~i~--ipgskS~~~---r~L~~a~la~g~s~i--~---~~---~~~~dv-~~ti~~L~~ 359 (735)
T PRK14806 294 VEAMNANDVSYSVLPGGAVKGTIR--VPGDKSISH---RSIMLGSLAEGVTEV--E---GF---LEGEDA-LATLQAFRD 359 (735)
T ss_pred ccccccCceEEEeccCCcccEEEE--cCCChhHHH---HHHHHHHhCCCcEEE--c---CC---CccHHH-HHHHHHHHH
Confidence 444455557788888666677544 433444444 336667788888765 3 33 344555 588999999
Q ss_pred cCCC
Q psy13192 113 FLVV 116 (401)
Q Consensus 113 ~G~~ 116 (401)
||+.
T Consensus 360 lG~~ 363 (735)
T PRK14806 360 MGVV 363 (735)
T ss_pred cCCE
Confidence 9964
No 49
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=21.96 E-value=5.2e+02 Score=28.45 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=46.4
Q ss_pred HHHHHHhhCCeeeeeecc-ceEEEEECCccc-ceeEEEeCCCCcchhhhHHHHhhhhccCC-CceEEEEEeccCCCCCCC
Q psy13192 22 LRLIDKLTNGTTLEVNET-GTTLVFQPGILV-GGLIQHECCKERGIGYYLEVCLALAPFCK-KGLQIVMRGVTNNQKDPS 98 (401)
Q Consensus 22 l~ll~~it~g~~~~~~~~-st~l~F~PG~i~-gg~~~~d~~tagSisl~lQ~lLplllfa~-~~~~Itl~GgT~~~~sPs 98 (401)
++.|.++ ++++...+.. ...++..++.+. +++|+++.. -|-- +.=++|..++++. .+++| ++..+...-|
T Consensus 130 l~~L~~l-Ga~v~~~~~~g~~pi~I~g~~l~~g~~i~i~gd--~SSq-~~SalLlAA~~~~g~~~~I--~~~~~~~s~~- 202 (661)
T PRK11860 130 VDALRQL-GCDIDYLGNEGFPPLRIGPAPLRLDAPIRVRGD--VSSQ-FLTALLMALPLVARRDITI--EVVGELISKP- 202 (661)
T ss_pred HHHHHHC-CCEEEEcCCCCcccEEEECCCcCCCceEEEcCC--CcHH-HHHHHHHHHHhCCCCCeEE--EeCCCCCCCC-
Confidence 5555554 3444332212 234566677776 788887543 1111 2226666776665 55555 4433322222
Q ss_pred HHHHHHhhHHHHhhcCCC
Q psy13192 99 VDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 99 ~dy~~~v~lplL~k~G~~ 116 (401)
|++ .++.+|++||++
T Consensus 203 --~i~-~t~~~L~~~G~~ 217 (661)
T PRK11860 203 --YIE-ITLNLLARFGIA 217 (661)
T ss_pred --HHH-HHHHHHHHCCCE
Confidence 443 678899999965
No 50
>PRK00106 hypothetical protein; Provisional
Probab=20.67 E-value=53 Score=35.34 Aligned_cols=51 Identities=14% Similarity=0.379 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeee------cCCChhHHHH
Q psy13192 294 VQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLI------GPLSPYTVQF 351 (401)
Q Consensus 294 ~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~------~~~~~~~~~~ 351 (401)
=.|++.++..+||.+-|++..+.++++ | |-.+.+ .|+|..| |.+.|.-|.-
T Consensus 245 GrNir~~E~~tGvdliiddtp~~v~lS--~----fdpvRR-eiAr~~le~Li~dgrIhp~rIEe 301 (535)
T PRK00106 245 GRNIRTLESLTGIDVIIDDTPEVVVLS--G----FDPIRR-EIARMTLESLIKDGRIHPARIEE 301 (535)
T ss_pred cchHHHHHHHhCceEEEcCCCCeEEEe--C----CChHHH-HHHHHHHHHHHHcCCcCHHHHHH
Confidence 358999999999999998767778888 5 655544 4777665 9999988753
No 51
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=20.31 E-value=3.4e+02 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=28.3
Q ss_pred ccceeeeeecCCChhHHHHHHHHHHhhcc----eEEeeecCC
Q psy13192 333 QKDVSQLLIGPLSPYTVQFLRHLKQFFGL----KFKLERESE 370 (401)
Q Consensus 333 ~~dv~~~~~~~~~~~~~~~lr~~~~~~g~----~f~~~~~~~ 370 (401)
..|+-|+++ |.+...-+....|++-|+. .|.|+=.|+
T Consensus 8 ~~d~~r~~l-~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 8 GEEKIRFRL-PPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 467888888 4477788888888888885 588886654
Done!