Query psy13192
Match_columns 401
No_of_seqs 173 out of 586
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:31:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pqv_A RCL1 protein; RTC-like, 100.0 3.1E-90 1E-94 689.5 35.4 325 2-334 32-363 (365)
2 3tut_A RNA 3'-terminal phospha 100.0 2.6E-83 9.1E-88 634.4 34.6 302 2-320 54-356 (358)
3 3pqv_A RCL1 protein; RTC-like, 99.8 3.9E-19 1.3E-23 177.2 7.5 302 68-400 16-359 (365)
4 3tut_A RNA 3'-terminal phospha 99.0 1.6E-11 5.3E-16 121.6 -0.9 292 55-369 25-350 (358)
5 3r38_A UDP-N-acetylglucosamine 84.1 3.8 0.00013 41.4 9.5 81 16-116 149-229 (454)
6 3rmt_A 3-phosphoshikimate 1-ca 78.2 6.1 0.00021 40.0 8.5 82 16-116 128-210 (455)
7 3slh_A 3-phosphoshikimate 1-ca 75.6 9.6 0.00033 38.3 9.2 81 16-116 129-210 (441)
8 1ejd_A MURA, EPT, UDP-N-acetyl 75.6 10 0.00035 37.6 9.3 79 21-116 125-204 (419)
9 2o0b_A 3-phosphoshikimate 1-ca 74.2 12 0.00041 37.6 9.5 90 9-116 122-213 (450)
10 2pqc_A 3-phosphoshikimate 1-ca 68.8 38 0.0013 33.7 11.7 59 43-116 149-208 (445)
11 2yvw_A UDP-N-acetylglucosamine 64.3 29 0.001 34.4 9.8 81 16-116 132-212 (425)
12 3nvs_A 3-phosphoshikimate 1-ca 58.7 51 0.0017 32.9 10.4 66 42-116 174-239 (450)
13 3rmt_A 3-phosphoshikimate 1-ca 52.7 22 0.00074 35.9 6.5 90 19-116 267-363 (455)
14 1rf6_A 5-enolpyruvylshikimate- 51.3 30 0.001 34.4 7.2 59 43-116 147-206 (427)
15 3nvs_A 3-phosphoshikimate 1-ca 44.4 1.1E+02 0.0039 30.3 10.3 120 53-194 110-241 (450)
16 1rf6_A 5-enolpyruvylshikimate- 42.7 55 0.0019 32.4 7.6 86 16-115 46-134 (427)
17 4fqd_A NIKO protein; beta/alph 42.3 53 0.0018 33.2 7.5 86 16-116 142-234 (479)
18 4fqd_A NIKO protein; beta/alph 37.6 1.1E+02 0.0037 30.9 8.9 85 16-116 294-381 (479)
19 3slh_A 3-phosphoshikimate 1-ca 36.6 1.6E+02 0.0055 29.2 10.0 104 20-141 54-168 (441)
20 3r38_A UDP-N-acetylglucosamine 32.8 1E+02 0.0035 30.7 7.8 79 20-116 218-297 (454)
21 1ejd_A MURA, EPT, UDP-N-acetyl 31.0 83 0.0028 30.9 6.7 61 42-116 3-63 (419)
22 2pqc_A 3-phosphoshikimate 1-ca 23.3 1E+02 0.0034 30.6 5.7 61 42-116 4-64 (445)
23 2yvw_A UDP-N-acetylglucosamine 21.9 1.8E+02 0.006 28.6 7.1 81 21-116 269-350 (425)
No 1
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=100.00 E-value=3.1e-90 Score=689.50 Aligned_cols=325 Identities=35% Similarity=0.597 Sum_probs=306.4
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||+++|++++||+|+|.||.++||+|+|||+|||||+|+||++||+++|++
T Consensus 32 rI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg~i~gG~~~~d~~tagSi~l~l~~lL~~a~f~~ 111 (365)
T 3pqv_A 32 KIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLYLAPFSK 111 (365)
T ss_dssp EEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECCEECCEEEEEECCTTSCHHHHHGGGGGTGGGSS
T ss_pred EEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECCcccCCeEEEECCCCcchHHHHHHHHHHHhcCC
Confidence 4899999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCC-CCCcceEeccCCcee
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPII-KSIKPVQSKDMGKIK 159 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~-~~L~~i~l~~~G~i~ 159 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ +++++|.||||||.|||||+++|+|+ +.++|++++++|+++
T Consensus 112 ~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~--~~~l~i~rRG~~P~GGGeV~~~v~p~~~~l~~i~l~~~G~i~ 189 (365)
T 3pqv_A 112 KKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVR--ECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHALDKTMIS 189 (365)
T ss_dssp SCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCC--SCEEEEEECCCTTTCCEEEEEEECCCCSSCCCCEECSCCCCC
T ss_pred CcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEEEecCCCCCCCeEEEEEEeCccccCCcceeecCCceE
Confidence 999999999999999999999999999999999995 59999999999999999999999765 679999999999999
Q ss_pred EEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCC
Q psy13192 160 RIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRT 239 (401)
Q Consensus 160 ~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~ 239 (401)
+|||+++++++|+|+++||+++|++.|+++++|++|++|+.++.+++.+||++|+|||||++||++++|+++++| .
T Consensus 190 ~IrG~a~~~~v~~~~a~R~~~~a~~~L~~~~~dv~I~~d~~~~~~~~~spG~gi~L~Aet~~g~~~~~~~lg~~g----~ 265 (365)
T 3pqv_A 190 SIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEVNITADVWRGENSGKSPGWGLTLVAENKQGWRIFSEAIGDAG----D 265 (365)
T ss_dssp EEEEEEEEESSCTHHHHHHHHHHHHHSTTCSSEECCEEEEECSGGGCSSCEEEEEEEEECTTSCEEEEEEEECTT----C
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHhhcCCCccEEEeeccccccCCCCceEEEEEEEECCCEEEEEehhccCC----C
Confidence 999999999999999999999999999999999999999888766788999999999999999999999999999 9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecC--CChHHHHHHHHHHHHcCcEEEEEe---cc
Q psy13192 240 VPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGP--LSPYTVQFLRHLKQFFGLKFKLEH---ES 314 (401)
Q Consensus 240 ~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~--lT~h~~t~l~vi~~flgv~f~i~~---~~ 314 (401)
+||+||++||++|+++|++|||||+|+|||+++|||||++|+|++++|+ +|++++..++.+++|||++|++++ ++
T Consensus 266 ~aE~vg~~aa~~Ll~~i~~gg~VD~~lqdqli~~mALa~~~vs~i~~g~~~lt~~~i~~lr~l~~~fgv~f~i~~~~~~~ 345 (365)
T 3pqv_A 266 VPEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLKPVDDNT 345 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCGGGHHHHHHHHHTSSSSEEEEEECGGGCSHHHHHHHHHHHHHHCCCCEEEECSSSS
T ss_pred CHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhCCCCcceEEeCCCCCCHHHHHHHHHHHHhhCcEEEEEecCCCC
Confidence 9999999999999999999999999999999999999987899999994 799999999999999999999987 24
Q ss_pred ceeEEeEeEEEEEeeecccc
Q psy13192 315 GMVDSSFQSLGCLYMALHQK 334 (401)
Q Consensus 315 g~~~i~~~c~G~g~~n~~~~ 334 (401)
+.++++ |.|+||.|++||
T Consensus 346 ~~~ii~--c~G~G~~N~~~~ 363 (365)
T 3pqv_A 346 TDLIAT--IKGIGFTNTNKK 363 (365)
T ss_dssp SCEEEE--EECCCC------
T ss_pred CeEEEE--EEEEeccccccc
Confidence 678999 999999999886
No 2
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=100.00 E-value=2.6e-83 Score=634.40 Aligned_cols=302 Identities=18% Similarity=0.232 Sum_probs=283.3
Q ss_pred cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192 2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK 80 (401)
Q Consensus 2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~ 80 (401)
.|+|||+ |+||||++||+++|++++++|||++++.+.|||+|+|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus 54 ~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~PG~i~gg~~~~d~~tagSi~l~lq~lLp~~lFa~ 133 (358)
T 3tut_A 54 TITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFAD 133 (358)
T ss_dssp EEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEECCCCCCCEEEEECSSSCBHHHHHHHHHHHHTTSS
T ss_pred EEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEECCCccCceEEEECCCcccHHHHHHHHHHHHHhCC
Confidence 4799999 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192 81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR 160 (401)
Q Consensus 81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~ 160 (401)
+|++|+|+||||++||||+||+++||+|+|++||++ ++++|.||||||.|||||.++|+|+++|+|++++++|++++
T Consensus 134 ~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~---~~l~i~rRG~~P~GGGeV~~~v~pv~~l~~i~l~~~G~i~r 210 (358)
T 3tut_A 134 GPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIH---QQTTLLRHGFYPAGGGVVATEVSPVASFNTLQLGERGNIVQ 210 (358)
T ss_dssp SCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCC---EEEEEEECCCTTTCCEEEEEEECCCSCCCCCBCCBCCCEEE
T ss_pred CCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCc---EEEEEEeccccCCCCeEEEEEEecCCCcccceeecCCCceE
Confidence 999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCC
Q psy13192 161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTV 240 (401)
Q Consensus 161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~ 240 (401)
|||+++++++|+++++||+++||+. ++++++.++..+ .+.+||++++||||+++++ .++++++++| ++
T Consensus 211 IrG~a~~~~v~~~va~R~~~~ar~~----~~~~~~~~~~~~---~~~spG~gi~L~ae~~~~~-~~~~alG~~G----~~ 278 (358)
T 3tut_A 211 MRGEVLLAGVPRHVAEREIATLAGS----FSLHEQNIHNLP---RDQGPGNTVSLEVESENIT-ERFFVVGEKR----VS 278 (358)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHBTT----BCEEEEEEEEEC---GGGCSEEEEEEEEEESSCE-EEEEEECCTT----CC
T ss_pred EEEEEEEcCCChHHHHHHHHHHHhc----CCcceeeeeecc---CCCCCCeEEEEEEEEeeee-EEEEeeCCCC----CC
Confidence 9999999999999999999999985 356666666543 2579999999999999986 5888899999 99
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEeccceeEEe
Q psy13192 241 PETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSS 320 (401)
Q Consensus 241 aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~ 320 (401)
||+||++||++|+++|++|||||+|+|||+++|||||+ .|+++++++|+|++||+|++|+||+++|++++.++.+.++
T Consensus 279 aE~VG~~aA~~Ll~~l~~gg~VD~~l~Dqlil~mALa~--~s~i~~~~lT~Ht~T~i~vie~fl~v~f~i~~~~~~~~v~ 356 (358)
T 3tut_A 279 AEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAG--AGEFTVAHPSSNLLTNIAVVERFLPVRFSLIETDGVTRVS 356 (358)
T ss_dssp HHHHHHHHHHHHHHHHTSCBSBCHHHHHHHHHHHHHHT--CCEEEESSCCHHHHHHHHHHHHHSSCCEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhCC--CCeEEEcCCCHHHHHHHHHHHHhcCCEEEEEecCCceEEE
Confidence 99999999999999999999999999999999999994 5889999999999999999999999999999844444443
No 3
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=99.76 E-value=3.9e-19 Score=177.22 Aligned_cols=302 Identities=18% Similarity=0.203 Sum_probs=197.6
Q ss_pred hHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecc----cC--CCCcEEEEEe
Q psy13192 68 YLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGM----EP--EGGGEIYFNC 141 (401)
Q Consensus 68 ~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf----~P--~GGGeV~~~~ 141 (401)
+|...|-++.+.++|++| ..++.+...|++......++.+++++. |+-...++..|. +| .-||+++++|
T Consensus 16 ilR~alaLS~ltgkpvrI--~nIRa~r~~PGL~~qhls~l~ll~~it---ng~v~g~~~gst~l~F~Pg~i~gG~~~~d~ 90 (365)
T 3pqv_A 16 NFRLRVVMATLSGKAIKI--EKIRSDDLNPGLKDYEVSFLRLMEAVT---NGSSIEISYTGTTVIFRPGIITGGSYTHQC 90 (365)
T ss_dssp THHHHHHHHHHHCCCEEE--ESSSTTSSSCSCCHHHHHHHHHHHHHE---ESCEEEECTTSSCEEEECCEECCEEEEEEC
T ss_pred HHHHHHHHHHhhCCCEEE--EEecCCCCCCCccHHHHHHHHHHHHHh---CceEeeeecCCcEEEEECCcccCCeEEEEC
Confidence 678889999999999998 888888889999999999999999986 455666665554 57 5689999999
Q ss_pred eCCCC----CcceEeccC---Cce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCC-eeEEeecccCCCCCCCCceE
Q psy13192 142 PIIKS----IKPVQSKDM---GKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPD-VYLSVDHCKGPKSGKSPGFG 212 (401)
Q Consensus 142 ~p~~~----L~~i~l~~~---G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~-v~i~~d~~~~~~~~~~pG~~ 212 (401)
....+ +.|+.+..+ +.+ ..++|.+.++..|+ .+-+.......|++++.+ +++.+. +++.. +..|..
T Consensus 91 ~tagSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPs--vDy~~~v~lP~l~~fG~~~~~l~i~-rRG~~--P~GGGe 165 (365)
T 3pqv_A 91 PNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAG--IDAIKWGLMPIMEKFGVRECALHTL-KRGSP--PLGGGE 165 (365)
T ss_dssp CTTSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCC--HHHHHHTTHHHHHHTTCCSCEEEEE-ECCCT--TTCCEE
T ss_pred CCCcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCC--HHHHHHHHHHHHHHcCCCeEEEEEE-ecCCC--CCCCeE
Confidence 88765 466655552 333 47999988887776 345555555667888876 766654 34432 345677
Q ss_pred EEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhcCCCC--C-------CCCchhhH
Q psy13192 213 GSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISRGGMV--D-------SSFQSLGC 271 (401)
Q Consensus 213 i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~g~~V--D-------~~~qdqll 271 (401)
|.+..+.-....-..+ +.++| +.++..+|+++ ++|++.|+.......+ | .......+
T Consensus 166 V~~~v~p~~~~l~~i~-l~~~G~i~~IrG~a~~~~v~~~~a~R~~-~~a~~~L~~~~~dv~I~~d~~~~~~~~~spG~gi 243 (365)
T 3pqv_A 166 VHLVVDSLIAQPITMH-ALDKTMISSIRGVSYSTRVSPSLVNRMI-DGAKKVLKSASCEVNITADVWRGENSGKSPGWGL 243 (365)
T ss_dssp EEEEECCCCSSCCCCE-ECSCCCCCEEEEEEEEESSCTHHHHHHH-HHHHHHSTTCSSEECCEEEEECSGGGCSSCEEEE
T ss_pred EEEEEeCccccCCcce-eecCCceEEEEEEEEecCCCHHHHHHHH-HHHHHHHhhcCCCccEEEeeccccccCCCCceEE
Confidence 7777643110000111 22222 23456788888 4555554432111111 1 12345666
Q ss_pred HHHHhcCCCc--ceEEec--CCChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeeeec--CCC
Q psy13192 272 LYMALHQKDV--SQLLIG--PLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIG--PLS 345 (401)
Q Consensus 272 ~~mALa~~g~--S~i~~g--~lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~~~--~~~ 345 (401)
++.|-+..+. +.-.+| ..+.+.+. -+.+++++.. ++ .+++++-.+|-.-+-||++.++||+|+++| ++|
T Consensus 244 ~L~Aet~~g~~~~~~~lg~~g~~aE~vg-~~aa~~Ll~~---i~-~gg~VD~~lqdqli~~mALa~~~vs~i~~g~~~lt 318 (365)
T 3pqv_A 244 TLVAENKQGWRIFSEAIGDAGDVPEDIG-ASVAYHLLEE---IS-KSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQID 318 (365)
T ss_dssp EEEEECTTSCEEEEEEEECTTCCHHHHH-HHHHHHHHHH---HH-TCSSSCGGGHHHHHHHHHTSSSSEEEEEECGGGCS
T ss_pred EEEEEECCCEEEEEehhccCCCCHHHHH-HHHHHHHHHH---HH-cCCccchhhHHHHHHHHHhCCCCcceEEeCCCCCC
Confidence 6676654321 111122 23333322 2223332110 22 567888888888888999999999999999 589
Q ss_pred hhHHHHHHHHHHhhcceEEeeecCCCCCCccccccccccCCceEEEEEeeeeccC
Q psy13192 346 PYTVQFLRHLKQFFGLKFKLERESEINPEQEEDEKPLRCGQEKVQLTCVHIFHLD 400 (401)
Q Consensus 346 ~~~~~~lr~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 400 (401)
+++|++|||||+|||++|+|+++++. .+.+++||+|+|+..
T Consensus 319 ~~~i~~lr~l~~~fgv~f~i~~~~~~--------------~~~~ii~c~G~G~~N 359 (365)
T 3pqv_A 319 ERFVWLLRDIKKVFGTEILLKPVDDN--------------TTDLIATIKGIGFTN 359 (365)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECSSS--------------SSCEEEEEECCCC--
T ss_pred HHHHHHHHHHHHhhCcEEEEEecCCC--------------CCeEEEEEEEEeccc
Confidence 99999999999999999999975521 135889999999974
No 4
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=99.04 E-value=1.6e-11 Score=121.63 Aligned_cols=292 Identities=14% Similarity=0.098 Sum_probs=179.7
Q ss_pred EEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecc-----
Q psy13192 55 IQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGM----- 129 (401)
Q Consensus 55 ~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf----- 129 (401)
+++|=.+.-.=+=+|...|.++.++++|++| ..++.+...|++......++.+++++. + .++++.+.|.
T Consensus 25 i~iDGs~~EGGGQ~lR~alaLS~Ltgkpv~I--~nIR~~r~~PGL~~qhl~~l~ll~~it-~---a~veg~~~GSt~l~f 98 (358)
T 3tut_A 25 IALDGAQGEGGGQILRSALSLSMITGQPFTI--TSIRAGRAKPGLLRQHLTAVKAATEIC-G---ATVEGAELGSQRLLF 98 (358)
T ss_dssp EEEETTSTTCSTHHHHHHHHHHHHHCCCEEE--ESTTTTSSSCSCCHHHHHHHHHHHHHH-T---CEEECCSTTCSCEEE
T ss_pred EEEeCCcccCchHHHHHHHHHHHhhCCCEEE--EEecCCCCCccccHHHHHHHHHHHHhh-C---CEEEEeecCcEEEEE
Confidence 5666543222356788889999999999998 899999999999888889999999986 4 7999998884
Q ss_pred cC--CCCcEEEEEeeCCCC----Cc---ceEeccCCce-eEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeec
Q psy13192 130 EP--EGGGEIYFNCPIIKS----IK---PVQSKDMGKI-KRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDH 199 (401)
Q Consensus 130 ~P--~GGGeV~~~~~p~~~----L~---~i~l~~~G~i-~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~ 199 (401)
+| .-||+++++|+...+ ++ |+.+-..+++ ..++|.+.++..|+ .+-+.....-.|++++.++++.+.
T Consensus 99 ~PG~i~gg~~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~ps--vDy~~~v~lP~l~~fG~~~~l~i~- 175 (358)
T 3tut_A 99 RPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPP--ADFIRRVLEPLLAKIGIHQQTTLL- 175 (358)
T ss_dssp ECCCCCCCEEEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCC--HHHHHHTHHHHHHHHTCCEEEEEE-
T ss_pred ECCCccCceEEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCC--HHHHHHHHHHHHHHcCCcEEEEEE-
Confidence 57 568999999987654 22 2222223333 47889888777666 345555556677888888776653
Q ss_pred ccCCCCCCCCceEEEEEEEecCceEEeeeeccCCC------------CCCCCChHHHHHHHHHHHHHHHhcCCCCC----
Q psy13192 200 CKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPP------------PATRTVPETLGEQLAYNLLEEISRGGMVD---- 263 (401)
Q Consensus 200 ~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g------------~~~~~~aE~vg~~aa~~Ll~~i~~g~~VD---- 263 (401)
+++. .+..|..|.+...--.. +-.=.+.++| +.++..+|++.+. |++.+.+.+. ..|
T Consensus 176 rRG~--~P~GGGeV~~~v~pv~~--l~~i~l~~~G~i~rIrG~a~~~~v~~~va~R~~~~-ar~~~~~~~~--~~~~~~~ 248 (358)
T 3tut_A 176 RHGF--YPAGGGVVATEVSPVAS--FNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIAT-LAGSFSLHEQ--NIHNLPR 248 (358)
T ss_dssp ECCC--TTTCCEEEEEEECCCSC--CCCCBCCBCCCEEEEEEEEEEESSCHHHHHHHHHH-HBTTBCEEEE--EEEEECG
T ss_pred eccc--cCCCCeEEEEEEecCCC--cccceeecCCCceEEEEEEEEcCCChHHHHHHHHH-HHhcCCccee--eeeeccC
Confidence 4443 24446667666643111 1111122232 1334556666633 3332211000 011
Q ss_pred CCCchhhHHHHHhcCCCc-ceEEecC--CChHHHHHHHHHHHHcCcEEEEEeccceeEEeEeEEEEEeeeccccceeeee
Q psy13192 264 SSFQSLGCLYMALHQKDV-SQLLIGP--LSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLL 340 (401)
Q Consensus 264 ~~~qdqll~~mALa~~g~-S~i~~g~--lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~~~c~G~g~~n~~~~dv~~~~ 340 (401)
....+..+.+.|-+..+. +-...|+ .+.+.+. -+.+++++.. ++ .+++++-.+|-.-+-||++.. .++++
T Consensus 249 ~~spG~gi~L~ae~~~~~~~~~alG~~G~~aE~VG-~~aA~~Ll~~---l~-~gg~VD~~l~Dqlil~mALa~--~s~i~ 321 (358)
T 3tut_A 249 DQGPGNTVSLEVESENITERFFVVGEKRVSAEVVA-AQLVKEVKRY---LA-STAAVGEYLADQLVLPMALAG--AGEFT 321 (358)
T ss_dssp GGCSEEEEEEEEEESSCEEEEEEECCTTCCHHHHH-HHHHHHHHHH---HT-SCBSBCHHHHHHHHHHHHHHT--CCEEE
T ss_pred CCCCCeEEEEEEEEeeeeEEEEeeCCCCCCHHHHH-HHHHHHHHHH---HH-cCCccchhhHHHHHHHHHhCC--CCeEE
Confidence 112344455555543221 1112231 2332221 2223332111 22 467777666666677899874 69999
Q ss_pred ecCCChhHHHHHHHHHHhhcceEEeeecC
Q psy13192 341 IGPLSPYTVQFLRHLKQFFGLKFKLERES 369 (401)
Q Consensus 341 ~~~~~~~~~~~lr~~~~~~g~~f~~~~~~ 369 (401)
.|++|++++..+|++|+|||++|++++.+
T Consensus 322 ~~~lT~Ht~T~i~vie~fl~v~f~i~~~~ 350 (358)
T 3tut_A 322 VAHPSSNLLTNIAVVERFLPVRFSLIETD 350 (358)
T ss_dssp ESSCCHHHHHHHHHHHHHSSCCEEEEEET
T ss_pred EcCCCHHHHHHHHHHHHhcCCEEEEEecC
Confidence 99999999999999999999999999743
No 5
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=84.13 E-value=3.8 Score=41.38 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCC
Q psy13192 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQK 95 (401)
Q Consensus 16 ~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~ 95 (401)
..|+.+|+.+ ++++. .+.+ .+.+..+.++|++|.+|+.+++ +...+|..++++++.++| + |...
T Consensus 149 ~~~~~~L~~l----Ga~i~-~~~g--~~~i~~~~l~g~~~~l~~~S~q----~~s~lLlAa~la~G~t~I--~---~~~~ 212 (454)
T 3r38_A 149 DLHLKGFEAM----GAVVK-IENG--YIEATAEKLVGAKVYLDFPSVG----ATQNIMMAATLAEGTTVI--E---NVAR 212 (454)
T ss_dssp HHHHHHHHHT----TCEEE-EETT--EEEEECSSCBCCEEECSSCCHH----HHHHHHHHHTTSBSEEEE--E---SCCC
T ss_pred HHHHHHHHHC----CCEEE-ecCC--EEEEEEcCccCcEEEecCCCHH----HHHHHHHHHhcCCCcEEE--E---cCCC
Confidence 4566666654 23332 2322 4677777799999999975433 567788888899988776 3 3333
Q ss_pred CCCHHHHHHhhHHHHhhcCCC
Q psy13192 96 DPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 96 sPs~dy~~~v~lplL~k~G~~ 116 (401)
.| |+. .++.+|++||++
T Consensus 213 ~p---~i~-~t~~~L~~~Ga~ 229 (454)
T 3r38_A 213 EP---EIV-DLANFLNQMGAR 229 (454)
T ss_dssp CH---HHH-HHHHHHHHTTCC
T ss_pred Cc---HHH-HHHHHHHHCCCC
Confidence 44 444 468999999965
No 6
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=78.17 E-value=6.1 Score=40.00 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhCCeeeeeeccc-eEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCC
Q psy13192 16 EYEVNLLRLIDKLTNGTTLEVNETG-TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQ 94 (401)
Q Consensus 16 ~qhl~~l~ll~~it~g~~~~~~~~s-t~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~ 94 (401)
..|+.+|+.+ ++++...+.++ -=++...+.++|++|.++..+ +=+...+|..++++++.+.| ++ .
T Consensus 128 ~~~~~~L~~l----Ga~i~~~~~~~~~Pl~i~g~~l~g~~i~l~~~S----sq~~s~lLlAa~~a~G~t~i--~e-p--- 193 (455)
T 3rmt_A 128 KRVTEPLKSM----GAQIDGRDHGNLTPLSIRGGQLKGIDFHSPVAS----AQMKSAILLAGLRAEGKTSV--TE-P--- 193 (455)
T ss_dssp HHHHHHHHHT----TCEEEEHHHHTEEEEEEECCSCBCCEEECSSCC----HHHHHHHHHHHHTSBSCEEE--EC-S---
T ss_pred HHHHHHHHHC----CCEEEEecCCCcccEEEEeCCccceEEEEccCc----HHHHHHHHHHHHhcCCCEEE--EC-C---
Confidence 5677666654 34433211122 125666778999999998543 44566777788899988776 31 1
Q ss_pred CCCCHHHHHHhhHHHHhhcCCC
Q psy13192 95 KDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 95 ~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.++-|| ++.+|++||++
T Consensus 194 -~~s~~~----t~~~L~~~Ga~ 210 (455)
T 3rmt_A 194 -AKTRDH----TERMLEAFGVN 210 (455)
T ss_dssp -SCCCCH----HHHHHHHTTCC
T ss_pred -cCcHHH----HHHHHHHCCCC
Confidence 223234 67999999975
No 7
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=75.61 E-value=9.6 Score=38.26 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhCCeeeeeeccceEEEEECC-cccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCC
Q psy13192 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPG-ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQ 94 (401)
Q Consensus 16 ~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG-~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~ 94 (401)
..|+.+|+.+ ++++ ..+.+.--++...+ .++|++|.++.. -+-+..++|..+++++.+++|. +
T Consensus 129 ~~~~~~L~~l----Ga~i-~~~~g~~p~~i~g~~~l~g~~i~l~~~----Ssq~~s~lLlAa~~a~g~t~i~-----e-- 192 (441)
T 3slh_A 129 KRIIDPLTLM----GAKI-DSTGNVPPLKIYGNPRLTGIHYQLPMA----SAQVKSCLLLAGLYARGKTCIT-----E-- 192 (441)
T ss_dssp HHHHHHHHHT----TCEE-EEETTEEEEEEECCTTCBCCEEECSSC----CHHHHHHHHHHHTTSBSEEEEE-----C--
T ss_pred HHHHHHHHHc----CCEE-EecCCeEEEEEEcCCCccceEEEecCC----CHHHHHHHHHHHHhcCCCeEee-----C--
Confidence 5777776655 3444 32333234444544 499999999853 3456778888899999888772 1
Q ss_pred CCCCHHHHHHhhHHHHhhcCCC
Q psy13192 95 KDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 95 ~sPs~dy~~~v~lplL~k~G~~ 116 (401)
-.|+.|+ ++.+|++||++
T Consensus 193 ~~~~~~~----t~~~L~~~Ga~ 210 (441)
T 3slh_A 193 PAPSRDH----TERLLKHFHYT 210 (441)
T ss_dssp SSCCCCH----HHHHHHHTTCC
T ss_pred CcccHHH----HHHHHHHCCCe
Confidence 1333333 56899999976
No 8
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=75.58 E-value=10 Score=37.60 Aligned_cols=79 Identities=13% Similarity=0.005 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCeeeeeeccceEEEEEC-CcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCH
Q psy13192 21 LLRLIDKLTNGTTLEVNETGTTLVFQP-GILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSV 99 (401)
Q Consensus 21 ~l~ll~~it~g~~~~~~~~st~l~F~P-G~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~ 99 (401)
.++.|+++ ++++. .+.+ .+.+.. +.++|+++.++. -| +-+..+++.+++|++++++| ++ .. +-
T Consensus 125 ~~~~L~~m-Ga~i~-~~~g--~~~v~~~~~L~g~~i~~~~---~s-~~~~~~ll~aa~~a~G~t~I--~~---~~---~e 188 (419)
T 1ejd_A 125 HIFGLEKL-GAEIK-LEEG--YVKASVNGRLKGAHIVMDK---VS-VGATVTIMSAATLAEGTTII--EN---AA---RE 188 (419)
T ss_dssp HHHHHHHT-TCEEE-EETT--EEEEECSSSCBCCEEECSS---CC-HHHHHHHHHHHTTSBSEEEE--ET---CC---CC
T ss_pred HHHHHHHC-CCEEE-EcCC--EEEEEEcCCccceEEecCC---CC-HHHHHHHHHHHhcCCCcEEE--Ee---CC---CC
Confidence 35555555 34443 2333 466654 478999887764 23 44678999999999999876 42 22 22
Q ss_pred HHHHHhhHHHHhhcCCC
Q psy13192 100 DSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 100 dy~~~v~lplL~k~G~~ 116 (401)
+|+. .++..|++||++
T Consensus 189 ~~i~-~t~~~L~~~Ga~ 204 (419)
T 1ejd_A 189 PEIV-DTANFLVALGAK 204 (419)
T ss_dssp HHHH-HHHHHHHHTTCE
T ss_pred chHH-HHHHHHHHCCCE
Confidence 3555 788999999964
No 9
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=74.21 E-value=12 Score=37.64 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=59.6
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEEC-CcccceeEEEeC-CCCcchhhhHHHHhhhhccCCCceEEE
Q psy13192 9 HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQP-GILVGGLIQHEC-CKERGIGYYLEVCLALAPFCKKGLQIV 86 (401)
Q Consensus 9 r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~P-G~i~gg~~~~d~-~tagSisl~lQ~lLplllfa~~~~~It 86 (401)
++.| ...|+.+|+.+ ++++.. +...++..+ +.++|++|.++. .+++ +..++|..+++++..++|+
T Consensus 122 ~~RP--i~~~~~~L~~l----Ga~i~~---~~~p~~i~g~~~l~g~~i~i~~d~Ssq----~~salllAA~~~~g~~~I~ 188 (450)
T 2o0b_A 122 RGRP--IAPLLDALREL----GVAVDG---TGLPFRVRGNGSLAGGTVAIDASASSQ----FVSGLLLSAASFTDGLTVQ 188 (450)
T ss_dssp GGSC--CHHHHHHHHHT----TCEEEC---SSSSEEEECCSCCCCEEEEECCTTCTH----HHHHHHHHGGGSTTCEEEE
T ss_pred CCCC--HHHHHHHHHHC----CCEEEc---CceeEEEEecCCCcCcEEEcCCCCCHH----HHHHHHHHHHHcCCCeEEE
Confidence 3445 48888887765 344321 233455555 468899999885 2333 5566777888888889987
Q ss_pred EEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 87 MRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 87 l~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+.|.. ..+-.|++ .++.+|++||++
T Consensus 189 ~~~~~----~~s~p~i~-~t~~~L~~~Ga~ 213 (450)
T 2o0b_A 189 HTGSS----LPSAPHIA-MTAAMLRQAGVD 213 (450)
T ss_dssp ECSSC----CCCHHHHH-HHHHHHHHTTCC
T ss_pred eCCCC----cCCCcHHH-HHHHHHHHCCCe
Confidence 76531 23556665 788999999965
No 10
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=68.81 E-value=38 Score=33.72 Aligned_cols=59 Identities=7% Similarity=-0.123 Sum_probs=41.8
Q ss_pred EEEECC-cccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQPG-ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~PG-~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
++..++ .++++++.++ +.-+-+..+++..+++++++++|+-. .++-|++. ..|++||++
T Consensus 149 i~i~~~~~l~g~~i~~~----~~ssq~~~~lllaa~~a~G~t~I~~~-------~~~~~~~~----~~L~~~Ga~ 208 (445)
T 2pqc_A 149 VTLRGPKTPTPITYRVP----MASAQVKSAVLLAGLNTPGITTVIEP-------IMTRDHTE----KMLQGFGAN 208 (445)
T ss_dssp EEEECCSSCCCCEEECS----SSCHHHHHHHHHHHHTSSSEEEEEES-------SCCCCHHH----HHHHHTTCC
T ss_pred EEEeCCCCCCCeEEEeC----CCCHHHHHHHHHHHhhCCCceEEEEc-------cCCHHHHH----HHHHHCCCE
Confidence 555554 6888887643 44567888999999999998887322 23444554 889999965
No 11
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=64.34 E-value=29 Score=34.39 Aligned_cols=81 Identities=10% Similarity=-0.051 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCC
Q psy13192 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQK 95 (401)
Q Consensus 16 ~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~ 95 (401)
..|+.+|+.+ ++++.. +. + .+.+..+.++|+++.++. .| .-+...+|..+++++++++| + |
T Consensus 132 ~~~~~~L~~l----Ga~i~~-~~-g-~~~i~~~~l~g~~i~~~~---~S-~~~~s~lllaa~la~g~t~i--~---~--- 192 (425)
T 2yvw_A 132 DQHLKFFKEA----GADVEV-RE-G-YVYVNLKEKRRVHFKFDL---VT-VTGTENALLYLASVPEESIL--E---N--- 192 (425)
T ss_dssp HHHHHHHHHT----TCEEEE-ET-T-EEEEECSSCCCCEEECSS---CC-HHHHHHHHHHHTTCSSEEEE--E---S---
T ss_pred HHHHHHHHHC----CCEEEe-cC-C-EEEEEecCccceEEeccc---cc-HHHHHHHHHHHHhcCCCEEE--e---C---
Confidence 5666666554 344432 23 3 577777778999988873 34 44566677777788887765 4 2
Q ss_pred CCCHHHHHHhhHHHHhhcCCC
Q psy13192 96 DPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 96 sPs~dy~~~v~lplL~k~G~~ 116 (401)
.++-+|.. .++.+|++||++
T Consensus 193 ~~~~~~i~-~t~~~L~~~Ga~ 212 (425)
T 2yvw_A 193 IALEPEVM-DLIEVLKKMGAH 212 (425)
T ss_dssp CCCCHHHH-HHHHHHHHTTCE
T ss_pred CCCCchHH-HHHHHHHHCCCe
Confidence 35666777 459999999954
No 12
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=58.74 E-value=51 Score=32.94 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=45.1
Q ss_pred EEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 42 TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 42 ~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
-++...+.++||++.++... |- -++-++|..+++++++++|+..| + ..+-.|+. .++.+|++||++
T Consensus 174 p~~I~g~~l~gg~i~i~g~~--sS-q~~s~lLlAa~la~g~t~I~~~~--~---~~s~p~i~-~t~~~L~~~Ga~ 239 (450)
T 3nvs_A 174 PLRIQGTGLQAGTVTIDGSI--SS-QFLTAFLMSAPLAQGKVTIKIVG--E---LVSKPYID-ITLHIMEQFGVQ 239 (450)
T ss_dssp CEEEECCCCCSEEEEECCSS--CT-HHHHHHHHHGGGSSSCEEEEESS--C---CSSHHHHH-HHHHHHHHTTCC
T ss_pred eEEEEcCCcCceEEEeCCCC--cH-HHHHHHHHHHHHCCCcEEEEeCC--C---cCCchHHH-HHHHHHHHCCCC
Confidence 36666667899999888532 21 22237788888999988885544 1 23445654 788999999976
No 13
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=52.70 E-value=22 Score=35.90 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCeeeeeecc----c---eEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEecc
Q psy13192 19 VNLLRLIDKLTNGTTLEVNET----G---TTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVT 91 (401)
Q Consensus 19 l~~l~ll~~it~g~~~~~~~~----s---t~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT 91 (401)
..++..+.++ ++.+. .... + -.++..++.+++- .+|....-..+=.++++..++.|++.+++| +|.-
T Consensus 267 ~~il~~L~~m-Ga~i~-~~~~~~~~ge~~~~i~v~~~~l~~~--~i~~~~~P~~~D~~p~lavla~~a~G~s~I--~~~~ 340 (455)
T 3rmt_A 267 AGILEVLKQM-GATLA-MENERVQGGEPVADLTIETSVLQGV--EIGGDIIPRLIDEIPIIAVLATQASGRTVI--KDAE 340 (455)
T ss_dssp THHHHHHHHT-TCEEE-EEEEEEETTEEEEEEEEECCCCBCC--CEETTHHHHHGGGHHHHHHHHHTSBSCEEE--EC--
T ss_pred HHHHHHHHHc-CCEEE-EcCCcccCCccceEEEEecCCceeE--EEeCccCCchHHHHHHHHHHHHhCCCcEEE--Eccc
Confidence 3467777775 34433 2221 1 1266677777663 345432222224477888899999999998 5543
Q ss_pred CCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 92 NNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 92 ~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+...-.| |-+. .+..-|+|||++
T Consensus 341 ~LrvkEs-dRi~-a~~~eL~kmGa~ 363 (455)
T 3rmt_A 341 ELKVKET-NRID-TVVSELTKLGAS 363 (455)
T ss_dssp ---CHHH-HHHH-HHHHHHHHTTCC
T ss_pred cccccch-hHHH-HHHHHHHHCCCE
Confidence 3211111 3332 688899999964
No 14
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=51.28 E-value=30 Score=34.36 Aligned_cols=59 Identities=14% Similarity=-0.037 Sum_probs=41.7
Q ss_pred EEEECC-cccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 43 LVFQPG-ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 43 l~F~PG-~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
++..++ .++|+++.++.- | +=+...++..++++++.++|+ .. .++-+|+. ..|++||++
T Consensus 147 i~i~~~~~L~g~~i~~~~~---s-sq~~s~lllaA~~a~G~t~I~--~~-----~~~~~~i~----~~L~~~Ga~ 206 (427)
T 1rf6_A 147 LRLKGTKNLRPIHYELPIA---S-AQVKSALMFAALQAKGESVII--EK-----EYTRNHTE----DMLQQFGGH 206 (427)
T ss_dssp EEEECCTTCCCCEEECSSC---C-HHHHHHHHHHHTTSSEEEEEE--CS-----SCCCCHHH----HHHHHTTCC
T ss_pred EEEeccCCCCceEEEeCCC---C-HHHHHHHHHHHHhcCCCeEEE--ec-----cCCHHHHH----HHHHHCCCC
Confidence 666664 689998776521 2 267888999999999988772 22 34555655 689999976
No 15
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=44.41 E-value=1.1e+02 Score=30.32 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=62.4
Q ss_pred eeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEe-eecccC
Q psy13192 53 GLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIK-KRGMEP 131 (401)
Q Consensus 53 g~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~-~rGf~P 131 (401)
..+.++|+.+|+...+ +.+++.+ .+.+++|.|+-.-. ..|++. ++-.|++||+ +++.. ..|+.|
T Consensus 110 ~~~~l~~g~sgt~~R~---l~~~la~--~~~~~~l~G~~~l~-~RPi~~----~l~~L~~lGa-----~i~~~~~~g~~p 174 (450)
T 3nvs_A 110 QPLELFLGNAGTAMRP---LAAALCL--GQGDYVLTGEPRMK-ERPIGH----LVDALRQAGA-----QIEYLEQENFPP 174 (450)
T ss_dssp SCEEEECTTCHHHHHH---HHHHTTS--SBCEEEEECSGGGG-GSCCHH----HHHHHHHTTC-----EEEESSSTTSSC
T ss_pred CCceEEccCccchHHH---HHHHHhc--CCcEEEEeCCcccc-cCCHHH----HHHHHHHCCC-----EEEEEcCCCeEe
Confidence 3567899999887664 4444444 34567778875443 334444 3567889994 44442 345544
Q ss_pred -------CCCcEEEEEeeCCCC-CcceEe---ccCCceeEEEEEEEecccChHHHHHHHHHHHHHhhhcCCCee
Q psy13192 132 -------EGGGEIYFNCPIIKS-IKPVQS---KDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194 (401)
Q Consensus 132 -------~GGGeV~~~~~p~~~-L~~i~l---~~~G~i~~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~ 194 (401)
.-||+|.+...-..+ +.++.+ ...|.. .|+. .....+ +-.++...+.|++++.+++
T Consensus 175 ~~I~g~~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t-~I~~---~~~~~s---~p~i~~t~~~L~~~Ga~i~ 241 (450)
T 3nvs_A 175 LRIQGTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKV-TIKI---VGELVS---KPYIDITLHIMEQFGVQVI 241 (450)
T ss_dssp EEEECCCCCSEEEEECCSSCTHHHHHHHHHGGGSSSCE-EEEE---SSCCSS---HHHHHHHHHHHHHTTCCCE
T ss_pred EEEEcCCcCceEEEeCCCCcHHHHHHHHHHHHHCCCcE-EEEe---CCCcCC---chHHHHHHHHHHHCCCCEE
Confidence 234676665422111 333332 123432 2222 111111 1125556677788876664
No 16
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=42.72 E-value=55 Score=32.35 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhCCeeeeeeccceEEEEECCc---ccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccC
Q psy13192 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGI---LVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTN 92 (401)
Q Consensus 16 ~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~---i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~ 92 (401)
+.+...+++|.++ ++++. ..+++++..+.. ....+..+||+.+|+..+++=+++ +.+ +.++++.|+-.
T Consensus 46 ~Dv~~~~~~L~~l-G~~i~---~~~~~~~I~g~~~~~~~~p~~~id~~~sgt~~rll~a~l--a~~---~~~v~l~G~~~ 116 (427)
T 1rf6_A 46 EDVLSTMQVFRDL-GVEIE---DKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVL--AGA---DFEVEMFGDDS 116 (427)
T ss_dssp HHHHHHHHHHHHT-TCEEE---EETTEEEEECCCSSCCCCCSSCEECTTCHHHHHHHHHHG--GGC---SSEEEEECCTT
T ss_pred HHHHHHHHHHHHc-CCeEE---ecCCEEEEECCCCCCcCCCcceeeccccchHHHHHHHHH--hcC---CcEEEEeCCCc
Confidence 6677778888887 34443 222367776642 333345689999998887665555 222 35777898755
Q ss_pred CCCCCCHHHHHHhhHHHHhhcCC
Q psy13192 93 NQKDPSVDSFKAGGLPVLKQFLV 115 (401)
Q Consensus 93 ~~~sPs~dy~~~v~lplL~k~G~ 115 (401)
...-| + ..++-.|++||.
T Consensus 117 l~~Rp-i----~~~l~~L~~mGa 134 (427)
T 1rf6_A 117 LSKRP-M----DRVTLPLKKMGV 134 (427)
T ss_dssp GGGSC-C----HHHHHHHHHTTC
T ss_pred cCCCC-H----HHHHHHHHHCCC
Confidence 43333 1 134556889994
No 17
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=42.32 E-value=53 Score=33.20 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEE-eCCC-Ccchh--hhHH---HHhhhhccCCCceEEEEE
Q psy13192 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQH-ECCK-ERGIG--YYLE---VCLALAPFCKKGLQIVMR 88 (401)
Q Consensus 16 ~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~-d~~t-agSis--l~lQ---~lLplllfa~~~~~Itl~ 88 (401)
..|+.+|+.+ ++++. ....+ .+-++.+.++|++|++ |+.+ +-=|| .|+. .+|.+++++++.++| +
T Consensus 142 ~~~~~~L~~l----Ga~i~-~~~~g-~~p~~~~~l~g~~i~l~~~sSSSQfiS~lq~v~~t~~lLlaa~la~G~t~I--~ 213 (479)
T 4fqd_A 142 EHLLDVMGRF----GVTTR-LTADG-SVDLTAQRLTPCTIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTL--Q 213 (479)
T ss_dssp HHHHHHHHTT----TCEEE-ECTTS-CEEEECSSCCCCEEEGGGGCSBTTTTBCTTHHHHHHHHHHHHHTSEEEEEE--E
T ss_pred HHHHHHHHHC----CCEEE-eccCC-ceEEEEcCccccEEEeccccchHHhhccchhHHHHHHHHHHHHhCCCcEEE--e
Confidence 4566665543 33332 22212 3555667899999999 7643 11122 2222 267788888888876 2
Q ss_pred eccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 89 GVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 89 GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
|.. +-+|+. .++.+|++||++
T Consensus 214 ---~~~---~~pdi~-~Tl~~L~~~Ga~ 234 (479)
T 4fqd_A 214 ---HPY---LKPDVT-DMVTVLRDLGAD 234 (479)
T ss_dssp ---SCC---CSHHHH-HHHHHHHHHTCC
T ss_pred ---cCC---CChHHH-HHHHHHHHCCCe
Confidence 332 334664 589999999976
No 18
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=37.57 E-value=1.1e+02 Score=30.88 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=52.2
Q ss_pred HHHH-HHHHHHHHhhCCeeeeeeccceEEEEEC--CcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccC
Q psy13192 16 EYEV-NLLRLIDKLTNGTTLEVNETGTTLVFQP--GILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTN 92 (401)
Q Consensus 16 ~qhl-~~l~ll~~it~g~~~~~~~~st~l~F~P--G~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~ 92 (401)
++|. .++..|.++ ++++. ...+ .++..+ +.+++.++..+- .+..+=+..+++.+++|++.+++|+ ..
T Consensus 294 ~~~~~~i~~~L~~m-Ga~i~-~~~~--~i~v~~~~~~L~g~~i~~~~--~~~~~D~~p~l~~~a~~A~G~t~I~--e~-- 363 (479)
T 4fqd_A 294 VHALAPEFDLLDRM-GVRVD-VGAD--EVTAHPLTKPLRPVEFTAMS--RGVFSDSQPFLALLGAYAEGPTYIR--EA-- 363 (479)
T ss_dssp HHHTHHHHHHHHHH-TCCEE-ECSS--EEEECCCSSCBCCCEEEECT--TSBCTTTHHHHHHHHTTBSEEEEEE--ES--
T ss_pred cCchHHHHHHHHHC-CCEEE-EcCC--eEEEEecCCCCCCeEEecCC--CCCCHHHHHHHHHHHHhCCCcEEEE--cC--
Confidence 4464 477888886 45443 2333 466666 788888766542 1222334577788899999999984 21
Q ss_pred CCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 93 NQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 93 ~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
+..+ |..+...|++||++
T Consensus 364 i~e~------R~~~~~eL~~lGa~ 381 (479)
T 4fqd_A 364 VWEH------RFGFAPELEALGIR 381 (479)
T ss_dssp SSSS------CCTTHHHHHHHTCC
T ss_pred Cccc------HHHHHHHHHHCCCe
Confidence 1111 22367899999965
No 19
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=36.64 E-value=1.6e+02 Score=29.18 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=55.9
Q ss_pred HHHHHHHHhhCCeeeeeeccceEEEEECCc---ccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCC
Q psy13192 20 NLLRLIDKLTNGTTLEVNETGTTLVFQPGI---LVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKD 96 (401)
Q Consensus 20 ~~l~ll~~it~g~~~~~~~~st~l~F~PG~---i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~s 96 (401)
+.+++++++ ++++ .....+.+++..+.. +....-.+||+.+|..+.++=+ +++.... +.+|.|+-.-. .
T Consensus 54 ~~~~~L~~l-G~~i-~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~sgtt~r~l~g---~l~~~~g--~~~l~G~~~l~-~ 125 (441)
T 3slh_A 54 AMVSALQQM-GASI-QVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSG---LLAGQPF--NTVLTGDSSLQ-R 125 (441)
T ss_dssp HHHHHHHHT-TCEE-EEEGGGTEEEEECCCTTCCCCCSSCEECTTCHHHHHHHHH---HHTTSSS--EEEEECCTTGG-G
T ss_pred HHHHHHHHc-CCEE-EEecCCCEEEEeccccCCCCCCcceeeeccccccHHHHHH---HHHhCCC--EEEEeCCcccc-c
Confidence 445555555 2332 222133466666653 3333446899999988875544 3333333 34578865443 3
Q ss_pred CCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccC--------CCCcEEEEEe
Q psy13192 97 PSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEP--------EGGGEIYFNC 141 (401)
Q Consensus 97 Ps~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P--------~GGGeV~~~~ 141 (401)
.|+|.+ +-.|++||+ ++ ....|+.| .-|+++.+..
T Consensus 126 RPi~~~----~~~L~~lGa-----~i-~~~~g~~p~~i~g~~~l~g~~i~l~~ 168 (441)
T 3slh_A 126 RPMKRI----IDPLTLMGA-----KI-DSTGNVPPLKIYGNPRLTGIHYQLPM 168 (441)
T ss_dssp SCCHHH----HHHHHHTTC-----EE-EEETTEEEEEEECCTTCBCCEEECSS
T ss_pred CCHHHH----HHHHHHcCC-----EE-EecCCeEEEEEEcCCCccceEEEecC
Confidence 444433 345789995 44 34567655 2245665554
No 20
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=32.77 E-value=1e+02 Score=30.75 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCeeeeeeccceEEEEECC-cccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCC
Q psy13192 20 NLLRLIDKLTNGTTLEVNETGTTLVFQPG-ILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPS 98 (401)
Q Consensus 20 ~~l~ll~~it~g~~~~~~~~st~l~F~PG-~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs 98 (401)
..+++|.++ ++++.. .+..+++..|+ .+.+.+|.+... ..+.++++ ..+++++.. ++++|- .
T Consensus 218 ~t~~~L~~~-Ga~I~~--~~~~~i~I~g~~~l~~~~~~v~~D-~s~A~~~l----~aaal~gg~--v~i~g~---~---- 280 (454)
T 3r38_A 218 DLANFLNQM-GARVIG--AGTEVIRIEGVKELTATEHSIIPD-RIEAGTFM----IAAAITGGN--VLIEDA---V---- 280 (454)
T ss_dssp HHHHHHHHT-TCCEEC--TTSSEEEEECCSCEECCEEECCBC-HHHHHHHH----HHHHHTTCE--EEEESC---C----
T ss_pred HHHHHHHHC-CCCEEE--CCCeEEEEecCccccccccccCCC-hhHHHHHH----HHHHHcCCc--EEEcCC---C----
Confidence 345666665 344431 22247777775 577777766322 23333433 333344554 555652 2
Q ss_pred HHHHHHhhHHHHhhcCCC
Q psy13192 99 VDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 99 ~dy~~~v~lplL~k~G~~ 116 (401)
.+++ +.++-.|++||++
T Consensus 281 ~~~~-~~i~~~L~~mGa~ 297 (454)
T 3r38_A 281 PEHI-SSLIAKLEEMGVQ 297 (454)
T ss_dssp GGGG-HHHHHHHHHTTCE
T ss_pred chHH-HHHHHHHHHCCCE
Confidence 1223 3688999999954
No 21
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=30.96 E-value=83 Score=30.88 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=40.4
Q ss_pred EEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 42 TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 42 ~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
.++..|+...+|++++. ||-+. ...+|.++++++++++|+ |.+.+| +.. .++.+|++||++
T Consensus 3 ~~~i~~~~~l~G~v~i~----gsks~-~~r~Llaa~la~g~t~i~-----n~~~~~---dv~-~t~~~L~~lGa~ 63 (419)
T 1ejd_A 3 KFRVQGPTRLQGEVTIS----GAKNA-ALPILFAALLAEEPVEIQ-----NVPKLK---DID-TTMKLLTQLGTK 63 (419)
T ss_dssp EEEEEECCCCEEEEECC----BCHHH-HHHHHHHGGGBSSCEEEE-----SCCCCH---HHH-HHHHHHHHTTCE
T ss_pred eEEEeCCCCceEEEEec----CcHHH-HHHHHHHHHHCCCcEEEe-----cCCCcH---HHH-HHHHHHHHCCCE
Confidence 35556665667765543 46666 466666899999988872 444444 443 667899999964
No 22
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=23.27 E-value=1e+02 Score=30.56 Aligned_cols=61 Identities=5% Similarity=-0.032 Sum_probs=39.1
Q ss_pred EEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCC
Q psy13192 42 TLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 42 ~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~ 116 (401)
-+.-.|+....|++ .+. ||-+.-.. +|.++++++++++| +|...+ +++. .++.+|++||+.
T Consensus 4 pl~i~~~~~l~G~v--~ip--gsKs~t~r-~ll~A~La~g~t~i-----~n~~~~---~dv~-~~~~~L~~lG~~ 64 (445)
T 2pqc_A 4 PATARKSSGLSGTV--RIP--GDKSISHR-SFMFGGLASGETRI-----TGLLEG---EDVI-NTGKAMQAMGAR 64 (445)
T ss_dssp CEEEECCSCCEEEE--ECC--BCHHHHHH-HHHHHHHSEEEEEE-----ESCCCS---HHHH-HHHHHHHHTTCE
T ss_pred eEEEcCCCcceEEE--EcC--CCHHHHHH-HHHHHHhcCCcEEE-----ccCCCC---HHHH-HHHHHHHHCCCE
Confidence 35566755556654 443 56666664 44447788888776 555444 4554 778899999964
No 23
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=21.85 E-value=1.8e+02 Score=28.59 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCeeeeeeccceEEEEEC-CcccceeEEEeCCCCcchhhhHHHHhhhhccCCCceEEEEEeccCCCCCCCH
Q psy13192 21 LLRLIDKLTNGTTLEVNETGTTLVFQP-GILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSV 99 (401)
Q Consensus 21 ~l~ll~~it~g~~~~~~~~st~l~F~P-G~i~gg~~~~d~~tagSisl~lQ~lLplllfa~~~~~Itl~GgT~~~~sPs~ 99 (401)
+++.|.++ ++++. ... ..++..+ +.++|.++..+--..-++-+ .+.++.+++|++.+++| ++.- .. .
T Consensus 269 l~~~L~~m-Ga~i~-~~~--~~i~i~~~~~L~g~~i~~~~~p~~p~d~-~~~~~~aa~~a~G~t~I--~~~~---~e-~- 336 (425)
T 2yvw_A 269 VVEKLKLI-GGEVV-EEN--GNLRVFRKESLRACDIETQVYPGFPTDM-QAQFMALLSVAKGKSRI--KENI---FE-H- 336 (425)
T ss_dssp HHHHHHHH-TEEEE-EET--TEEEEEECSCCBCCCEEBCSTTSBCHHH-HHHHHHHHTTSBSEEEE--ECSS---CT-T-
T ss_pred HHHHHHHC-CCEEE-EcC--CEEEEEecCCccceEEeCCCCCCCcccH-HHHHHHHHHHCCCeEEE--EcCc---HH-H-
Confidence 66777766 34433 332 3366654 67888776543221112233 34477788899998887 4311 11 1
Q ss_pred HHHHHhhHHHHhhcCCC
Q psy13192 100 DSFKAGGLPVLKQFLVV 116 (401)
Q Consensus 100 dy~~~v~lplL~k~G~~ 116 (401)
+......|++||++
T Consensus 337 ---r~~~~~~L~~~Ga~ 350 (425)
T 2yvw_A 337 ---RFHHAQELNRLGAN 350 (425)
T ss_dssp ---CCHHHHHHHTTTCC
T ss_pred ---HHHHHHHHHhCCCE
Confidence 22246789999965
Done!