RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13192
(401 letters)
>gnl|CDD|234198 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis protein RCL1.
Members of this strictly eukaryotic protein family are
not RNA 3'-phosphate cyclase (6.5.1.4), but rather a
homolog with a distinct function, found in the nucleolus
and required for ribosomal RNA processing. Homo sapiens
has both a member of this RCL (RNA terminal phosphate
cyclase like) family and EC 6.5.1.4, while Saccharomyces
has a member of this family only.
Length = 360
Score = 438 bits (1128), Expect = e-154
Identities = 157/312 (50%), Positives = 225/312 (72%), Gaps = 2/312 (0%)
Query: 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
+YEV+ LRL++K+TNG+ +E++ TGTT++++PG++ GG + HEC RGIGYYLE L L
Sbjct: 39 DYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPTSRGIGYYLEPLLLL 98
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
APF KK L I ++G+TN+ DPSVD+ + LP+LK+F + D G+EL I KRG P GGG
Sbjct: 99 APFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLELKILKRGAPPLGGG 158
Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYL 195
E+ CP+IK +K + + G++KRIRG ++ RVSP++ANR++D A+G+L + LPDVY+
Sbjct: 159 EVELRCPVIKQLKTIHLTERGRVKRIRGVAYSTRVSPSLANRMIDAARGVLNNLLPDVYI 218
Query: 196 SVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEE 255
+ D KG SGKSPG+G S+ AE++ G +++A+AVS P ++PE LG++ AY LLEE
Sbjct: 219 TTDVWKGKNSGKSPGYGLSLVAETTNGCIISAEAVS--SPGEPSLPEDLGKRAAYLLLEE 276
Query: 256 ISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
I +GG VDS+ Q L L MAL Q+DVS+L +G LS YTV+FLR +K+FFG+ FKL+ +
Sbjct: 277 IYKGGCVDSTHQPLALLLMALGQEDVSKLRLGKLSEYTVEFLRDIKEFFGVTFKLKDDKS 336
Query: 316 MVDSSFQSLGCL 327
S L C+
Sbjct: 337 DNGSGKVLLTCV 348
Score = 85.4 bits (212), Expect = 2e-18
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 12/82 (14%)
Query: 313 ESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERESEIN 372
+ G VDS+ Q L L MAL Q+DVS+L +G LS YTV+FLR +K+FFG+ FKL+ + N
Sbjct: 279 KGGCVDSTHQPLALLLMALGQEDVSKLRLGKLSEYTVEFLRDIKEFFGVTFKLKDDKSDN 338
Query: 373 PEQEEDEKPLRCGQEKVQLTCV 394
G KV LTCV
Sbjct: 339 ------------GSGKVLLTCV 348
>gnl|CDD|238447 cd00875, RNA_Cyclase_Class_I, RNA 3' phosphate cyclase domain
(class I) This subfamily of cyclase-like proteins are
encoded in eukaryotic genomes. They lack a conserved
catalytic histidine residue required for cyclase
activity, so probably do not function as cyclases. They
are believed to play a role in ribosomal RNA processing
and assembly.
Length = 341
Score = 385 bits (990), Expect = e-133
Identities = 153/298 (51%), Positives = 210/298 (70%), Gaps = 4/298 (1%)
Query: 17 YEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALA 76
+EV+ LRL++K+TNG+ +E++ TGTTL+++PG++ GG++ H+C RGIGY+LE L LA
Sbjct: 44 HEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNHDCPVSRGIGYFLEPLLLLA 103
Query: 77 PFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGE 136
PF KK L I ++G+TN+ DPSVDS + LP+LK+F + D +EL I KRG+ P GGGE
Sbjct: 104 PFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRGVAPGGGGE 163
Query: 137 IYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLS 196
+ F CP+ K + P + G+IKRIRG ++ RVSP+IANR++D A+G+L ++PDVY+
Sbjct: 164 VGFRCPVRKPLTPHLNDSPGRIKRIRGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIY 223
Query: 197 VDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEI 256
D KG SGKSPGFG S+ AE++TGV+ +A+ VS P VPE LG + AY LLEEI
Sbjct: 224 TDVRKGDNSGKSPGFGISLVAETTTGVLYSAENVS-PAGGESEVPEDLGRECAYQLLEEI 282
Query: 257 SRGGMVDSSFQSLGCLYMALHQKDVSQL-LIGPLSPYT--VQFLRHLKQFFGLKFKLE 311
SRGG VDS Q L L MAL +DV +L L GPL + LR LK+FFG+ FK++
Sbjct: 283 SRGGCVDSYQQPLALLLMALGSEDVGRLRLGGPLIDEEFKIHLLRDLKEFFGIMFKID 340
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase. RNA cyclases
are a family of RNA-modifying enzymes that are conserved
in all cellular organisms. They catalyze the
ATP-dependent conversion of the 3'-phosphate to the
2',3'-cyclic phosphodiester at the end of RNA, in a
reaction involving formation of the covalent AMP-cyclase
intermediate. The structure of RTC demonstrates that
RTCs are comprised two domain. The larger domain
contains an insert domain of approximately 100 amino
acids.
Length = 330
Score = 267 bits (685), Expect = 2e-87
Identities = 96/296 (32%), Positives = 146/296 (49%), Gaps = 9/296 (3%)
Query: 17 YEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALA 76
++ +R + K+TN T L F+PG + GG + + I L+ L L
Sbjct: 44 QHLSAVRALAKITNAEVEGAEVGSTELEFRPGTIRGGDYRVDIGTAGSITLVLQTLLPLL 103
Query: 77 PFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGE 136
F K +I ++G T+ P VD + LP+L++F + EL + +RG P GGGE
Sbjct: 104 LFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEG---ELKVLRRGFYPRGGGE 160
Query: 137 IYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLS 196
+ P +K ++P+ + GK+K+IRG ++ RV P +A R D AK L LPDVY+
Sbjct: 161 VLLTVPPVKPLRPIHLVERGKVKKIRGIAYSTRVPPHVAEREADAAKARLNKLLPDVYIV 220
Query: 197 VDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEI 256
D +G G G +I A + G L ADA+ E +GE+ A LLEE+
Sbjct: 221 TDVRRGDTGGSGGGGSITILAATLEGCTLGADALG----KKGKPAEKVGEEAAKELLEEL 276
Query: 257 SRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH 312
G VD LYMAL + +G L+ + V +R ++QF G+KF++E
Sbjct: 277 ESGAAVDEHLADQLILYMALAGGS--EFRVGELTLHLVTNIRVIEQFLGVKFEIEE 330
>gnl|CDD|223507 COG0430, RCL1, RNA 3'-terminal phosphate cyclase [RNA processing
and modification].
Length = 341
Score = 173 bits (442), Expect = 5e-51
Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 13/299 (4%)
Query: 17 YEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALA 76
+ +R ++ N T LVF+PG + GG + + I L+ L L
Sbjct: 48 QHLTAVRAAAEICNAEVEGAELGSTELVFRPGKIRGGDYRVDIGTAGSITLVLQTLLPLL 107
Query: 77 PFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGE 136
F +I + G T+ P VD + LPVL++ + EL + KRG P GGGE
Sbjct: 108 LFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGI---ECELEVLKRGFYPRGGGE 164
Query: 137 IYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLS 196
+ K P+ + G+I+++RG + + P +A R + AK +L +V +
Sbjct: 165 VLLTVEPPKEKLPLHLTERGEIEKVRGIAHSTNLPPHVAERQAEAAKELLGKLGLEVEIY 224
Query: 197 VDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEI 256
+ + G SPG G ++AE S G + ADA+ E +GE+ A LL E+
Sbjct: 225 TEV---RRGGLSPGSGIVLWAE-SEGSRIGADALGEK----GKSAEVVGEEAAKELLREL 276
Query: 257 SRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
G VD YMAL + + + ++ + + + +++F G++F++E E G
Sbjct: 277 ESGAAVDEHLADQLIPYMAL--AGIGEFTVAEVTSHLLTNIWVIERFLGVEFEVEGEEG 333
>gnl|CDD|238183 cd00295, RNA_Cyclase, RNA 3' phosphate cyclase domain - RNA
phosphate cyclases are enzymes that catalyze the
ATP-dependent conversion of 3'-phosphate at the end of
RNA into 2', 3'-cyclic phosphodiester bond. The enzymes
are conserved in eucaryotes, bacteria and archaea. The
exact biological role of this enzyme is unknown, but it
has been proposed that it is likely to function in
cellular RNA metabolism and processing. RNA phosphate
cyclase has been characterized in human (with at least
three isozymes), and E. coli, and it seems to be
taxonomically widespread. The crystal structure of RNA
phospate cyclase shows that it consists of two domains.
The larger domain contains three repeats of a fold
originally identified in the bacterial translation
initiation factor IF3.
Length = 338
Score = 168 bits (427), Expect = 6e-49
Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 7/298 (2%)
Query: 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
+ ++ L+ +++ + E G +F+PG ++GG ++ C G G +LE L
Sbjct: 43 DQHLSALKAAEEICGASVEEAELGGQRFIFRPGNIIGGDVRFACGSAGGCGLFLEPILIA 102
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
F ++ + G T+N + D + P+L + + +EL RG GG
Sbjct: 103 CLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDELELRHGFRGAAGGGGA 162
Query: 136 EIYFNCPIIK-SIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
E F C K + + + G+ R G RV PA A R + +A G + PD++
Sbjct: 163 EENFLCASFKELLLGERGSEFGRQFRGEGIAAGTRVPPAFAEREIASAAGSFNLFEPDIF 222
Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLE 254
+ D +G + G PG S+ AES G A+ E + A L E
Sbjct: 223 ILPDDQRGDECGNGPGNSISLEAESEKGCSEAAEHCG----EAGESAEDVAAFCAKELKE 278
Query: 255 EISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPL--SPYTVQFLRHLKQFFGLKFKL 310
I+ G VD L MAL + ++ GPL F R ++ FF +F+
Sbjct: 279 VIASGAAVDEYLADQLLLGMALAGEAGEFIVAGPLCHLLQLTNFARDVEAFFNCEFRF 336
>gnl|CDD|203195 pfam05189, RTC_insert, RNA 3'-terminal phosphate cyclase (RTC),
insert domain. RNA cyclases are a family of
RNA-modifying enzymes that are conserved in all cellular
organisms. They catalyze the ATP-dependent conversion of
the 3'-phosphate to the 2',3'-cyclic phosphodiester at
the end of RNA, in a reaction involving formation of the
covalent AMP-cyclase intermediate. The structure of RTC
demonstrates that RTCs are comprised two domain. The
larger domain contains an insert domain of approximately
100 amino acids.
Length = 101
Score = 105 bits (264), Expect = 6e-28
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Query: 156 GKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSI 215
G+IKRIRG + RV P +A R+ D A+G+L LPDVY+ D +G SGKSPG G ++
Sbjct: 4 GRIKRIRGVAYVARVPPHVAERMADAARGVLNKPLPDVYIETD-KRGRDSGKSPGSGITL 62
Query: 216 YAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRG 259
AE+ T L ADA+ E +GE+ A LLEE+S G
Sbjct: 63 VAETET-CTLGADALG----ERGVPAEDVGEEAAEQLLEELSSG 101
>gnl|CDD|234197 TIGR03399, RNA_3prim_cycl, RNA 3'-phosphate cyclase. Members of
this protein family are RNA 3'-phosphate cyclase
(6.5.1.4), an enzyme whose function is conserved from E.
coli to human. The modification this enzyme performs
enables certain RNA ligations to occur, although the
full biological roll for this enzyme is not fully
described. This model separates this enzyme from a
related protein, present only in eukaryotes, localized
to the nucleolus, and involved in ribosomal modification
[Transcription, RNA processing].
Length = 326
Score = 105 bits (265), Expect = 1e-25
Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 23/300 (7%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETG-TTLVFQPGILVGGLIQHECCKERGIGYYLEVC 72
QH + ++ ++ N +E E G T L F PG + GG + + + L+
Sbjct: 46 QH---LTAVKAAAEICNAE-VEGAELGSTELEFIPGKIRGGDYRFDIGTAGSVTLVLQTL 101
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGI--ELIIKKRGME 130
L F ++ + G T+ P VD + LP+L++ GI EL + +RG
Sbjct: 102 LPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERM-----GIRAELELLRRGFY 156
Query: 131 PEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYL 190
P GGGE+ +K +KP++ ++ G++ R+ G A + +A R+ A+ L
Sbjct: 157 PRGGGEVRLRVEPVKKLKPLELEERGELLRVSGIAHAANLPAHVAERMAKAAREELRKLG 216
Query: 191 PDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLA 249
D + ++ G PG G ++AE + L A+ + E +GE+ A
Sbjct: 217 LDPEIEIEVLDK---GLGPGSGIVLWAE-TEHCRLGFSAL-----GEKGKSAEKVGEEAA 267
Query: 250 YNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFK 309
LL E+ G VD LYMAL S+ L+ + + ++QF ++F+
Sbjct: 268 EQLLAELRSGAAVDEHLADQLILYMAL-ASGESRFTTSELTMHLRTNIWVIEQFLPVRFE 326
>gnl|CDD|238446 cd00874, RNA_Cyclase_Class_II, RNA 3' phosphate cyclase domain
(class II). These proteins function as RNA cyclase to
catalyze the ATP-dependent conversion of 3'-phosphate to
a 2'.3'-cyclic phosphodiester at the end of RNA
molecule. A conserved catalytic histidine residue is
found in all members of this subfamily.
Length = 326
Score = 95.7 bits (239), Expect = 4e-22
Identities = 82/305 (26%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 14 QHEYEVNLLRLIDKLTNGTTLEVNETG-TTLVFQPGILVGGLIQHECCKERGIGYYLEVC 72
QH V I N +E E G T L F+PG + GG + + I L+
Sbjct: 44 QHLTAVRAAARI---CNAE-VEGAELGSTELEFEPGKIKGGDYEFDIGTAGSITLVLQTL 99
Query: 73 LALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGI--ELIIKKRGME 130
L F + + G T+ P +D + LP+L++ GI EL + +RG
Sbjct: 100 LPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERM-----GIEAELEVLRRGFY 154
Query: 131 PEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL---L 187
P GGGE+ K + P+ ++ G+I++IRG A + P +A R + A +L L
Sbjct: 155 PRGGGEVVLTVEPSKLLPPLLLEERGEIEKIRGISHAANLPPHVAERQAEAAAALLRKAL 214
Query: 188 SYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGE 246
++ S PG G ++AE L A+ + VP E +GE
Sbjct: 215 GLQIEIEPEDQ------SALGPGSGIVLWAEYEH-SRLGFSAL-----GKKGVPAEKVGE 262
Query: 247 QLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGL 306
+ A LL +S G VD +MAL S+ G L+ + + +++F G+
Sbjct: 263 EAAEELLAYLSSGAAVDEHLADQLIPFMAL--AGGSEFRTGELTLHLQTNIWVIEKFLGV 320
Query: 307 KFKLE 311
KF++E
Sbjct: 321 KFRIE 325
>gnl|CDD|235255 PRK04204, PRK04204, RNA 3'-terminal-phosphate cyclase; Provisional.
Length = 343
Score = 86.0 bits (214), Expect = 1e-18
Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 55/299 (18%)
Query: 41 TTLVFQPGILVGG-------------LIQHECCKERGIGYYLEVCLALAPFCKKGLQIVM 87
LVF PG + GG L+ L+ L F ++ +
Sbjct: 72 QELVFIPGPIRGGDYRFDIGTAGSITLV-------------LQTVLPALLFADGPSRVTI 118
Query: 88 RGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGI--ELIIKKRGMEPEGGGEIYFNCPIIK 145
G T+ P +D + LP+L++ GI E+ + +RG P GGGE+ ++
Sbjct: 119 TGGTDVPWAPPIDYIRRVTLPLLRRM-----GIEAEIELLRRGFYPAGGGEVAL---EVE 170
Query: 146 --SIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLP--DVYLSVDHCK 201
++P++ + G++ RIRG + +A R A +L L ++ ++V+
Sbjct: 171 PSKLRPLELLERGELLRIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEELS 230
Query: 202 GPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVP-ETLGEQLAYNLLEEISRGG 260
G PG G ++AE S + DA+ R P E +GE+ A LL ++ G
Sbjct: 231 R---GLGPGSGIVLWAE-SEHITEGFDAL-----GERGKPAEVVGEEAAEELLRYLASGA 281
Query: 261 MVDS--SFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMV 317
VD + Q + L MAL + L+ + + + +++F +KF++E G+V
Sbjct: 282 AVDEHLADQLI--LPMAL-AGGEGSFTVAELTSHLLTNIWVVEKFLPVKFEVEEYDGVV 337
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the
Enolpyruvate transferase (EPT) family and the RNA 3'
phosphate cyclase family (RTPC). These 2 families differ
in that EPT is formed by 3 repeats of an alpha-beta
structural domain while RTPC has 3 similar repeats with
a 4th slightly different domain inserted between the 2nd
and 3rd repeat. They evidently share the same active
site location, although the catalytic residues differ.
Length = 211
Score = 65.0 bits (158), Expect = 3e-12
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
+ L+ ++K+ T + F+PG + GG ++ L+ L L
Sbjct: 43 RQHLTFLKALEKICGATVEGGELGSDRISFRPGTVRGGDVRFAIGSAGSCTDVLQTILPL 102
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVL-KQFLVVDPGIELIIKKRGMEPEGG 134
F K ++ + G T+N P D + P L K + L
Sbjct: 103 LLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEET-LLRHGFYPAGGGVV 161
Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGIL 186
+ + + Q + L S A+ + + +L
Sbjct: 162 ATEVSPVEKLNTAQLRQL-----------VLPMLLASGAVEFTVAHPSCHLL 202
>gnl|CDD|225821 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
metabolism [Transcription / Amino acid transport and
metabolism].
Length = 511
Score = 42.0 bits (99), Expect = 4e-04
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 114 LVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQ-SKDMGKIKRIRGTVFALRVSP 172
L+V GI+L RG+E + G IY N P ++ S M +I+RI G V +R P
Sbjct: 20 LLVLRGIDL----RGIEIDPIGRIYLNFP---ELEFESFSSLMAEIRRIPG-VTDVRTVP 71
Query: 173 AIANRIVDTAKGILLSYLPDVYLSVD 198
+ + A LL LP+ LSVD
Sbjct: 72 WMPSEREHLALSALLEALPEPVLSVD 97
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 29.1 bits (65), Expect = 5.8
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 242 ETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLR--- 298
E L EQL E + RG SL L ++++ +QFL+
Sbjct: 197 EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLL-------KDDIQFLKAEL 249
Query: 299 -HLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQL 339
+ + FKLE E ++D+S + L ++ Q+DVS+L
Sbjct: 250 IEVAETEERVFKLEKERSLLDASLRELESKFIV-AQEDVSKL 290
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 28.9 bits (66), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 190 LPDVYLSVDHCKG 202
LPDVY+ D CKG
Sbjct: 757 LPDVYVPCDVCKG 769
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,476,934
Number of extensions: 2008721
Number of successful extensions: 1595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1567
Number of HSP's successfully gapped: 18
Length of query: 401
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 302
Effective length of database: 6,546,556
Effective search space: 1977059912
Effective search space used: 1977059912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)