RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13192
(401 letters)
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion
pocket, R biogenesis, unknown function; HET: TAR; 2.61A
{Kluyveromyces lactis}
Length = 365
Score = 275 bits (704), Expect = 6e-90
Identities = 111/304 (36%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 15 HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
+YEV+ LRL++ +TNG+++E++ TGTT++F+PGI+ GG H+C + +GY+ E L
Sbjct: 46 KDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLY 105
Query: 75 LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
LAPF KK I+ RG+T++ D +D+ K G +P++++F V + L KRG P GG
Sbjct: 106 LAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRE--CALHTLKRGSPPLGG 163
Query: 135 GEIYFNC-PIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDV 193
GE++ +I + + D I IRG ++ RVSP++ NR++D AK +L S +V
Sbjct: 164 GEVHLVVDSLIAQPITMHALDKTMISSIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEV 223
Query: 194 YLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLL 253
++ D +G SGKSPG+G ++ AE+ G + ++A+ VPE +G +AY+LL
Sbjct: 224 NITADVWRGENSGKSPGWGLTLVAENKQGWRIFSEAIGDA----GDVPEDIGASVAYHLL 279
Query: 254 EEISRGGMVDSSFQSLGCLYMALHQKDVSQLLI--GPLSPYTVQFLRHLKQFFGLKFKLE 311
EEIS+ G+V + L LYM + ++D+ +L I + V LR +K+ FG + L+
Sbjct: 280 EEISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLK 339
Query: 312 HESG 315
Sbjct: 340 PVDD 343
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of
RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A
{Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A*
1qmh_A* 1qmi_A
Length = 358
Score = 235 bits (601), Expect = 1e-74
Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 17/302 (5%)
Query: 16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
+ ++ ++ T L+F+PG + GG + L+ L
Sbjct: 69 RQHLTAVKAATEICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPA 128
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
F ++ + G T+N P D + P+L + + + + + G P GGG
Sbjct: 129 LWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGI---HQQTTLLRHGFYPAGGG 185
Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYL 195
+ + S +Q + G I ++RG V V +A R + T G + +++
Sbjct: 186 VVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIH- 244
Query: 196 SVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEE 255
+ PG S+ E S + V R E + QL +
Sbjct: 245 ------NLPRDQGPGNTVSLEVE-SENITERFFVVGEK----RVSAEVVAAQLVKEVKRY 293
Query: 256 ISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
++ V L MAL + + S + + +++F ++F L G
Sbjct: 294 LASTAAVGEYLADQLVLPMALA--GAGEFTVAHPSSNLLTNIAVVERFLPVRFSLIETDG 351
Query: 316 MV 317
+
Sbjct: 352 VT 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 67/204 (32%)
Query: 35 EVNETGTTLVF-------------QPGILVGGLIQHECCKERGI------------GYY- 68
E+NE T+ F QP + + E K +G+ G Y
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 69 -LEVCLALA-PFCKKGLQIV-MRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPG------ 119
L LA + +++V RG+T P D ++ ++PG
Sbjct: 1769 AL-ASLADVMSI-ESLVEVVFYRGMTMQVAVPR-DELGRSNYGMIA----INPGRVAASF 1821
Query: 120 ----IELIIKKRGMEPEGGG--EIY-FNCP----II----KSIKPVQSK-DMGKIKRIRG 163
++ ++++ G G EI +N + +++ V + + K+++I
Sbjct: 1822 SQEALQYVVERVG--KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID- 1878
Query: 164 TVFALRVSPAIANRIVDTAKGILL 187
+ L+ S ++ + +G L
Sbjct: 1879 -IIELQKSLSL-----EEVEGHLF 1896
Score = 41.2 bits (96), Expect = 7e-04
Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 58/164 (35%)
Query: 151 QSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY-LSVDHC--KGPKSGK 207
Q + MG L + A + + A ++ D Y S+ P +
Sbjct: 1627 QEQGMGM---------DLYKTSKAAQDVWNRAD----NHFKDTYGFSILDIVINNPVN-L 1672
Query: 208 SPGFGG----SIYAESSTGVVLTADAVSPPPPATRTVPETLGEQL--------------- 248
+ FGG I S + + + T + + + E
Sbjct: 1673 TIHFGGEKGKRIRENYSA---MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 249 -------------AYNLLEEISRGGMVDSSFQ---SLGCLYMAL 276
A+ L+ +G + + SLG Y AL
Sbjct: 1730 QFTQPALTLMEKAAFEDLKS--KGLIPADATFAGHSLG-EYAAL 1770
Score = 37.0 bits (85), Expect = 0.012
Identities = 39/182 (21%), Positives = 58/182 (31%), Gaps = 74/182 (40%)
Query: 76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
PF ++ L+ R F LPV P
Sbjct: 407 IPFSERKLKFSNR-------------F----LPV-------------------ASP---- 426
Query: 136 EIYFNCPIIKSIKPVQSKDMGKI------KRIRGTVFA------LR-VSPAIANRIVDTA 182
F+ ++ + +KD+ K K I+ V+ LR +S +I+ RIVD
Sbjct: 427 ---FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-- 481
Query: 183 KGILLSYLPDVY------LSVDH--CKGPKSGKSPGFGGSIYAESS-TGV-VLTADAVSP 232
+ LP V H GP G + G G + TGV V+ A +
Sbjct: 482 ---CIIRLP-VKWETTTQFKATHILDFGP--GGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 233 PP 234
P
Sbjct: 536 NP 537
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.39
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 10/37 (27%)
Query: 145 KSIKPVQSKDMGKIKRIRGTVFALRVSPAIA-NRIVD 180
+++K +Q+ +K ++A +PA+A ++
Sbjct: 20 QALKKLQAS----LK-----LYADDSAPALAIKATME 47
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism,
TYRR protei nucleotide-binding, transcription
regulation, activator; HET: PG4; 2.30A {Escherichia
coli}
Length = 190
Score = 30.7 bits (69), Expect = 0.54
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 124 IKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAK 183
I RG+E + G IY N + S M +I+RI G V +R P + + A
Sbjct: 26 IDLRGIEIDPIGRIYLNFAEL--EFESFSSLMAEIRRIAG-VTDVRTVPWMPSEREHLAL 82
Query: 184 GILLSYLPDVYLSVD 198
LL LP+ LSVD
Sbjct: 83 SALLEALPEPVLSVD 97
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 30.5 bits (69), Expect = 1.00
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 7/44 (15%)
Query: 225 LTADAVSPPPP----ATRTVPETLGEQLA---YNLLEEISRGGM 261
+ DA+ P V G ++A Y LL
Sbjct: 1 IAFDALREPDRESSAPPDDVQLVPGARIANGRYRLLIFHGGVPP 44
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET:
ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Length = 474
Score = 30.0 bits (67), Expect = 1.6
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 252 LLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
L + +S D L ++ + ++ ++Q + L ++ K
Sbjct: 86 LEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVF--LGLNRSDYMFQRSADGSPALKQI 143
Query: 312 HESGMVDSSFQSLGCLYMALHQ 333
E + +SF L A+H+
Sbjct: 144 -EINTISASFGGLASRTPAVHR 164
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 28.4 bits (64), Expect = 4.7
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 231 SPPPPATRTVPETL-GEQLA-YNLLEEISRGGM 261
P E+ G Q Y L + RGGM
Sbjct: 15 VPRGSHMDGTAESREGTQFGPYRLRRLVGRGGM 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 26.1 bits (58), Expect = 7.4
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 9/40 (22%)
Query: 370 EINPEQEEDEKPLRC---------GQEKVQLTCVHIFHLD 400
+ + + + C G +L C H FH
Sbjct: 29 LVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKP 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,089,700
Number of extensions: 367605
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 13
Length of query: 401
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 305
Effective length of database: 4,021,377
Effective search space: 1226519985
Effective search space used: 1226519985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)