RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13192
         (401 letters)



>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate
           cyclase, RPTC {Escherichia coli [TaxId: 562]}
          Length = 239

 Score =  158 bits (401), Expect = 8e-47
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 9/192 (4%)

Query: 16  EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
              +  ++   ++   T          L+F+PG + GG  +            L+  L  
Sbjct: 46  RQHLTAVKAATEICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPA 105

Query: 76  APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
             F     ++ + G T+N   P  D  +    P+L +  +     +  + + G  P GGG
Sbjct: 106 LWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGI---HQQTTLLRHGFYPAGGG 162

Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVF-----ALRVSPAIANRIVDTAKGILLSYL 190
            +      + S   +Q   +G+    +  +      A   + A  +  + T   ++  +L
Sbjct: 163 VVATEVSPVASFNTLQLGAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFL 222

Query: 191 PDVYLSVDHCKG 202
           P V  S+    G
Sbjct: 223 P-VRFSLIETDG 233


>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase,
           RPTC, insert domain {Escherichia coli [TaxId: 562]}
          Length = 95

 Score = 70.3 bits (172), Expect = 9e-16
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 154 DMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGG 213
           + G I ++RG V    V   +A R + T  G           ++ +       + PG   
Sbjct: 1   ERGNIVQMRGEVLLAGVPRHVAEREIATLAG----SFSLHEQNIHNL---PRDQGPGNTV 53

Query: 214 SIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRG 259
           S+  ES                  R   E +  QL   +   ++  
Sbjct: 54  SLEVESENITERFFVVGEK-----RVSAEVVAAQLVKEVKRYLAST 94


>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp.,
           strain TB-90 [TaxId: 1409]}
          Length = 154

 Score = 27.1 bits (60), Expect = 2.5
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 138 YFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSY--LPDVYL 195
           Y N        P       +I+ I  +VF    + +I + I    + IL  +  L +VY 
Sbjct: 55  YKNTEDSFGTNPENYVAAEQIRDIATSVFHETETLSIQHLIYLIGRRILERFPQLQEVYF 114

Query: 196 SVDH 199
              +
Sbjct: 115 ESQN 118


>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
           proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 56

 Score = 24.8 bits (54), Expect = 3.4
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 6/31 (19%)

Query: 376 EEDEKPLRCG------QEKVQLTCVHIFHLD 400
           EE+ + LRC       +    L C+H     
Sbjct: 1   EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSG 31


>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 397

 Score = 27.1 bits (58), Expect = 4.7
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 293 TVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALH--QKDVSQLLIGPLSPYT-V 349
           T+Q L  +     +        G+ +S  Q        +   ++    L          V
Sbjct: 21  TLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 80

Query: 350 QFLRHLKQFFGLKFKLERESEINPEQEEDE 379
             L  L++ +    + + +     +Q+ +E
Sbjct: 81  VLLNTLRKCYPQFAERDSQGGFYKQQDAEE 110


>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 292

 Score = 26.4 bits (58), Expect = 6.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 21  LLRLIDKLTNGTTLEVN 37
           LL+ + ++TNG TL+ N
Sbjct: 256 LLKKLVEMTNGRTLKAN 272


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,483,695
Number of extensions: 69849
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 6
Length of query: 401
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,213,086
Effective search space: 380909004
Effective search space used: 380909004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)