Query psy13193
Match_columns 198
No_of_seqs 277 out of 430
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 22:32:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00955 HCO3_cotransp: HCO3- 100.0 2.9E-42 6.2E-47 323.9 0.0 157 36-197 85-251 (510)
2 TIGR00834 ae anion exchange pr 100.0 4.1E-35 8.9E-40 288.9 7.9 146 36-197 421-566 (900)
3 KOG1172|consensus 100.0 7.4E-34 1.6E-38 276.4 7.3 134 36-197 412-545 (876)
4 TIGR00834 ae anion exchange pr 99.0 3.3E-10 7.2E-15 113.2 5.1 54 1-62 453-506 (900)
5 KOG1172|consensus 99.0 1.5E-10 3.3E-15 114.3 2.3 107 1-116 444-585 (876)
6 PF00955 HCO3_cotransp: HCO3- 98.9 4.4E-10 9.5E-15 106.7 0.0 49 1-53 117-165 (510)
7 PF09634 DUF2025: Protein of u 33.3 16 0.00034 28.0 0.2 16 98-113 27-42 (106)
8 COG0659 SUL1 Sulfate permease 30.7 2.1E+02 0.0045 28.0 7.5 102 7-127 52-153 (554)
9 PF13172 PepSY_TM_1: PepSY-ass 29.7 62 0.0013 19.5 2.5 21 74-94 9-29 (34)
10 TIGR00815 sulP high affinity s 26.7 2.4E+02 0.0052 27.2 7.1 107 6-127 44-152 (563)
11 PF03904 DUF334: Domain of unk 24.3 1.4E+02 0.0031 26.2 4.6 25 7-31 155-179 (230)
No 1
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=100.00 E-value=2.9e-42 Score=323.92 Aligned_cols=157 Identities=36% Similarity=0.599 Sum_probs=0.5
Q ss_pred CcccceeehhhhHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhcccceeeeeccccchhHHHHHHHH
Q psy13193 36 SWDYMSFRLWIGLWIGFILIILVAVDASALNSWDYMSFRLWIGLWIGFILIILVAVDASALVCYITRFTEENFATLIAFI 115 (198)
Q Consensus 36 ~~QPl~~~~~tg~~~~~i~i~~~ly~fc~~~~l~yL~~r~wiGlW~~~~~ll~~a~~as~lv~yiTRFTeEiF~~lIslI 115 (198)
.+|||+|+++|||+.+| ++++|++|+++++||+++|+|+|+|+++++++++++|+|.+|||+||||||+|++|||+|
T Consensus 85 ~gQPL~Ilg~TgP~~vf---~~~l~~~~~~~~~~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~i 161 (510)
T PF00955_consen 85 SGQPLTILGSTGPVLVF---EKILYKFCKSYGLDFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISII 161 (510)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccccCCccccCcCCCcceeecCCCCCCC---------CCccccccccchhhhhccCcEEeecCCCC-C
Q psy13193 116 FIYKAIENVLSIGKRFPTMSARNLNLSHDCRCIPPDDTDP---------IGSILNSTQLIKDECLRRNGTLVGVGCTM-S 185 (198)
Q Consensus 116 FI~eai~~l~~~f~~~pi~~~~~~~~~y~C~c~~p~~~~~---------n~~~~~w~~l~~~~c~~~~G~~~G~~C~~-~ 185 (198)
||+||+|+++++|++||++.+. .+.|+|.|.+|++..+ +....+|++++.++|.+++|++.|.+|++ +
T Consensus 162 Fi~ea~~~l~~~~~~~p~~~~~--~~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~ 239 (510)
T PF00955_consen 162 FIYEAIKKLVKIFKKYPLNSDY--VTQYSCQCTPPENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHV 239 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 9999999999999999998754 7889999999875211 13457899999999999999999999976 6
Q ss_pred CCCCCeeeeecc
Q psy13193 186 PPVPDVFLMNSQ 197 (198)
Q Consensus 186 p~~Pdv~l~S~i 197 (198)
+++||++|||++
T Consensus 240 ~~~p~taLlSli 251 (510)
T PF00955_consen 240 QYQPDTALLSLI 251 (510)
T ss_dssp ------------
T ss_pred CCCCcHHHHHHH
Confidence 789999999987
No 2
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=100.00 E-value=4.1e-35 Score=288.91 Aligned_cols=146 Identities=30% Similarity=0.536 Sum_probs=130.4
Q ss_pred CcccceeehhhhHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhcccceeeeeccccchhHHHHHHHH
Q psy13193 36 SWDYMSFRLWIGLWIGFILIILVAVDASALNSWDYMSFRLWIGLWIGFILIILVAVDASALVCYITRFTEENFATLIAFI 115 (198)
Q Consensus 36 ~~QPl~~~~~tg~~~~~i~i~~~ly~fc~~~~l~yL~~r~wiGlW~~~~~ll~~a~~as~lv~yiTRFTeEiF~~lIslI 115 (198)
.+|||+|+|+|||+++| ++++|+||++++++|+++|+|||+|+++||++++++|+|.+|||+||||||+|++|||+|
T Consensus 421 ~GQPL~IlG~TGPilvF---~~~ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~I 497 (900)
T TIGR00834 421 AAQPLLVVGFSGPLLVF---EEAFFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLI 497 (900)
T ss_pred cCCceEEecCcccHHHH---HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 58999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccccCCccccCcCCCcceeecCCCCCCCCCccccccccchhhhhccCcEEeecCCCCCCCCCCeeeee
Q psy13193 116 FIYKAIENVLSIGKRFPTMSARNLNLSHDCRCIPPDDTDPIGSILNSTQLIKDECLRRNGTLVGVGCTMSPPVPDVFLMN 195 (198)
Q Consensus 116 FI~eai~~l~~~f~~~pi~~~~~~~~~y~C~c~~p~~~~~n~~~~~w~~l~~~~c~~~~G~~~G~~C~~~p~~Pdv~l~S 195 (198)
|||||+++++++|++||++.+++. ..|.+|+. . +.+-++.+.++|.+++|++.|.+|+ ++||++|+|
T Consensus 498 FI~eai~~L~~~f~~~~~~~~~~~-----~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~c~---~~~~~~lls 564 (900)
T TIGR00834 498 FIYETFSKLIKIFQEHPLQVFYNT-----LFCVPPKP--Q---GPSVSALLEKDCSKLGGTLGGNNCR---FQPNTALLS 564 (900)
T ss_pred HHHHHHHHHHHHHhcCCccccccc-----cccccccc--c---ccccccccccccccccccccccccc---ccchHHHHH
Confidence 999999999999999998764433 24554431 1 2223567888999999999999998 799999999
Q ss_pred cc
Q psy13193 196 SQ 197 (198)
Q Consensus 196 ~i 197 (198)
+|
T Consensus 565 li 566 (900)
T TIGR00834 565 LV 566 (900)
T ss_pred HH
Confidence 86
No 3
>KOG1172|consensus
Probab=100.00 E-value=7.4e-34 Score=276.37 Aligned_cols=134 Identities=39% Similarity=0.621 Sum_probs=123.5
Q ss_pred CcccceeehhhhHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHhcccceeeeeccccchhHHHHHHHH
Q psy13193 36 SWDYMSFRLWIGLWIGFILIILVAVDASALNSWDYMSFRLWIGLWIGFILIILVAVDASALVCYITRFTEENFATLIAFI 115 (198)
Q Consensus 36 ~~QPl~~~~~tg~~~~~i~i~~~ly~fc~~~~l~yL~~r~wiGlW~~~~~ll~~a~~as~lv~yiTRFTeEiF~~lIslI 115 (198)
.+|||+|+|+|||+++| ++++|+||+++++|||++|+|||+|++++|++++|+|+|.+|||+||||||+|++|||+|
T Consensus 412 ggQPLlIlg~TgP~lVf---e~~lf~f~~~~~~dyl~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~i 488 (876)
T KOG1172|consen 412 GGQPLLILGVTGPLLVF---EKALFKFCKDNGLDYLAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLI 488 (876)
T ss_pred cCCceEEEecCccHHHH---HHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 58999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccccCCccccCcCCCcceeecCCCCCCCCCccccccccchhhhhccCcEEeecCCCCCCCCCCeeeee
Q psy13193 116 FIYKAIENVLSIGKRFPTMSARNLNLSHDCRCIPPDDTDPIGSILNSTQLIKDECLRRNGTLVGVGCTMSPPVPDVFLMN 195 (198)
Q Consensus 116 FI~eai~~l~~~f~~~pi~~~~~~~~~y~C~c~~p~~~~~n~~~~~w~~l~~~~c~~~~G~~~G~~C~~~p~~Pdv~l~S 195 (198)
|||||++|++++|+.||++...+.. | + ++| +.++|.+.+|+..|.+|+ ||++|||
T Consensus 489 Fi~eai~kl~~i~~~~~~~~~~~~~---------~-~-------~~~---~~~~~~~~~~~~~~~~~~-----p~~~lls 543 (876)
T KOG1172|consen 489 FIYEAIKKLIKIFKGLPIEFDSKPN---------P-G-------ADW---SGPECESVSGTLLGSSCR-----PDTALLS 543 (876)
T ss_pred HHHHHHHHHHHHhhcCcccccccCC---------c-c-------ccc---ccccccccCcccCCCcCC-----cchHHHH
Confidence 9999999999999999987632221 1 1 456 788999999999999996 9999999
Q ss_pred cc
Q psy13193 196 SQ 197 (198)
Q Consensus 196 ~i 197 (198)
+|
T Consensus 544 li 545 (876)
T KOG1172|consen 544 LI 545 (876)
T ss_pred HH
Confidence 86
No 4
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.00 E-value=3.3e-10 Score=113.20 Aligned_cols=54 Identities=41% Similarity=0.750 Sum_probs=44.3
Q ss_pred CcceehHHHHHHHHHHHHHhhcCceeeeeeeeeccCcccceeehhhhHHHHHHHHHHHHHHH
Q psy13193 1 MSFRLWIGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFILIILVAVDA 62 (198)
Q Consensus 1 l~~r~wig~w~~~~~~~~va~~~S~lv~~~trFte~~QPl~~~~~tg~~~~~i~i~~~ly~f 62 (198)
|++|+|||+|+++++++++|+|+|.+|||+||||||+ |...++. +|+++.+-+.
T Consensus 453 l~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEi----Fa~lIs~----IFI~eai~~L 506 (900)
T TIGR00834 453 LVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEI----FSFLISL----IFIYETFSKL 506 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH----HHHHHHH----HHHHHHHHHH
Confidence 4789999999999999999999999999999999997 8665555 4554444333
No 5
>KOG1172|consensus
Probab=98.99 E-value=1.5e-10 Score=114.29 Aligned_cols=107 Identities=28% Similarity=0.510 Sum_probs=72.3
Q ss_pred CcceehHHHHHHHHHHHHHhhcCceeeeeeeeeccCcccceeehhhhHHHHHHHHHHHHHHHhhc---CCcchh------
Q psy13193 1 MSFRLWIGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFILIILVAVDASAL---NSWDYM------ 71 (198)
Q Consensus 1 l~~r~wig~w~~~~~~~~va~~~S~lv~~~trFte~~QPl~~~~~tg~~~~~i~i~~~ly~fc~~---~~l~yL------ 71 (198)
|++|+|||+|+++++++++|+|+|++|+|+||||||+ | |.++.++|+++++.++-+. +..++.
T Consensus 444 l~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEi----F----~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~ 515 (876)
T KOG1172|consen 444 LAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEI----F----GLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPG 515 (876)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH----H----HHHHHHHHHHHHHHHHHHHhhcCcccccccCCcc
Confidence 5799999999999999999999999999999999997 6 4455567777766644333 222211
Q ss_pred -----H-------------HHHHHHHHHHHHHHHHHHh--------cccceeeeeccccchhHHHHHHHHH
Q psy13193 72 -----S-------------FRLWIGLWIGFILIILVAV--------DASALVCYITRFTEENFATLIAFIF 116 (198)
Q Consensus 72 -----~-------------~r~wiGlW~~~~~ll~~a~--------~as~lv~yiTRFTeEiF~~lIslIF 116 (198)
+ .|-=.++|+.++.+.+..+ +...+-+.++++-.| ||..++++.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isD-fgvpisIl~ 585 (876)
T KOG1172|consen 516 ADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISD-FGVPLSILV 585 (876)
T ss_pred cccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHh-hhhHHHHHH
Confidence 0 0122455555555433332 333445556667777 898888643
No 6
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=98.85 E-value=4.4e-10 Score=106.73 Aligned_cols=49 Identities=45% Similarity=0.853 Sum_probs=0.0
Q ss_pred CcceehHHHHHHHHHHHHHhhcCceeeeeeeeeccCcccceeehhhhHHHHHH
Q psy13193 1 MSFRLWIGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFI 53 (198)
Q Consensus 1 l~~r~wig~w~~~~~~~~va~~~S~lv~~~trFte~~QPl~~~~~tg~~~~~i 53 (198)
|++|.|+|+|+++++++++|+|+|.+|||+||||||+ |...++.+.++.
T Consensus 117 l~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEi----F~~lIs~iFi~e 165 (510)
T PF00955_consen 117 LPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEI----FALLISIIFIYE 165 (510)
T ss_dssp -----------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence 5799999999999999999999999999999999997 877766654443
No 7
>PF09634 DUF2025: Protein of unknown function (DUF2025); InterPro: IPR018595 This protein is produced from gene PA1123 in Pseudomonas. It appears to be present in the biofilm layer and may be a lipoprotein. It contains three alpha helices and six beta strands and is thought to be monomeric.; PDB: 2HG6_A.
Probab=33.30 E-value=16 Score=28.04 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=11.0
Q ss_pred eeeccccchhHHHHHH
Q psy13193 98 CYITRFTEENFATLIA 113 (198)
Q Consensus 98 ~yiTRFTeEiF~~lIs 113 (198)
+|+-||+|+.|++=++
T Consensus 27 ~~ivRFSEDsFGmDVa 42 (106)
T PF09634_consen 27 QHIVRFSEDSFGMDVA 42 (106)
T ss_dssp EEEEES-GGG-SSSS-
T ss_pred eEEEEecccccCCccc
Confidence 6899999999997544
No 8
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=30.69 E-value=2.1e+02 Score=27.98 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhcCceeeeeeeeeccCcccceeehhhhHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHH
Q psy13193 7 IGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFILIILVAVDASALNSWDYMSFRLWIGLWIGFILI 86 (198)
Q Consensus 7 ig~w~~~~~~~~va~~~S~lv~~~trFte~~QPl~~~~~tg~~~~~i~i~~~ly~fc~~~~l~yL~~r~wiGlW~~~~~l 86 (198)
.|++..++.-+..|+=|+. |-.+.|+||++.+.+ ..++-+.. +++++++. -..+-++++++
T Consensus 52 ~GLyas~i~~~v~alfGgs-------------~~~i~GPt~a~~~v~--a~~i~~~~-~~g~~~~~---~~tllaGv~~i 112 (554)
T COG0659 52 AGLYASIVAGIIYALFGGS-------------RGLISGPTGAFAVVL--AAVIASLV-ETGLALAF---LATLLAGVFQI 112 (554)
T ss_pred HHHHHHHHHHHHHHHHcCC-------------ccceeccchhhHHHH--HHHHHHHH-HHHHHHHH---HHHHHHHHHHH
Confidence 4777777766555544321 223778888886661 23333333 55555444 48888999999
Q ss_pred HHHHhcccceeeeeccccchhHHHHHHHHHHHHHHHHHHHc
Q psy13193 87 ILVAVDASALVCYITRFTEENFATLIAFIFIYKAIENVLSI 127 (198)
Q Consensus 87 l~~a~~as~lv~yiTRFTeEiF~~lIslIFI~eai~~l~~~ 127 (198)
++..+-.-++++|+.|--=-.|-.=|+++.+..-++++...
T Consensus 113 ~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~ 153 (554)
T COG0659 113 LLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGL 153 (554)
T ss_pred HHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998888888889998888888777654
No 9
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=29.68 E-value=62 Score=19.45 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q psy13193 74 RLWIGLWIGFILIILVAVDAS 94 (198)
Q Consensus 74 r~wiGlW~~~~~ll~~a~~as 94 (198)
=.|+|++.+++.++++.+++-
T Consensus 9 H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 9 HRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999888753
No 10
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=26.66 E-value=2.4e+02 Score=27.22 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHhhcCceeeeeeeeeccCcccceeehhhhHHHHHHHHHHHHHHHhhcCC--cchhHHHHHHHHHHHH
Q psy13193 6 WIGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFILIILVAVDASALNS--WDYMSFRLWIGLWIGF 83 (198)
Q Consensus 6 wig~w~~~~~~~~va~~~S~lv~~~trFte~~QPl~~~~~tg~~~~~i~i~~~ly~fc~~~~--l~yL~~r~wiGlW~~~ 83 (198)
..|++..++.-+..|+=||. |..+.|+++.+.+++ -.++-++..+.+ -++...-..+.+-+++
T Consensus 44 ~~GLysa~~~~iv~alfGss-------------~~~i~Gp~a~~sl~~--~~~v~~~~~~~~~~~~~~~~a~~l~~l~Gi 108 (563)
T TIGR00815 44 IYGLYTSFVPPFIYALFGTS-------------RDIAIGPVAVMSLLL--GSVIARVGLQYLFDCDAIRLAFTLTLLAGI 108 (563)
T ss_pred hhhhHHHHHHHHHhheecCC-------------CcccCCHHHHHHHHH--HHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Confidence 35677777777666655442 234677777654441 234444544443 2677888899999999
Q ss_pred HHHHHHHhcccceeeeeccccchhHHHHHHHHHHHHHHHHHHHc
Q psy13193 84 ILIILVAVDASALVCYITRFTEENFATLIAFIFIYKAIENVLSI 127 (198)
Q Consensus 84 ~~ll~~a~~as~lv~yiTRFTeEiF~~lIslIFI~eai~~l~~~ 127 (198)
+.+++..+....+++|+.+-.-..|..=++++.+..-++++...
T Consensus 109 ~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~ 152 (563)
T TIGR00815 109 FQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGI 152 (563)
T ss_pred HHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998888888664
No 11
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.32 E-value=1.4e+02 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhcCceeeeeee
Q psy13193 7 IGLWIGFILIILVAVDASALVCYIT 31 (198)
Q Consensus 7 ig~w~~~~~~~~va~~~S~lv~~~t 31 (198)
++...++++++++++-||-++.++.
T Consensus 155 ~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 155 GAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhh
Confidence 4555666666777777666555443
Done!