Query psy13193
Match_columns 198
No_of_seqs 277 out of 430
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 22:32:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hg6_A Hypothetical protein; s 30.1 11 0.00038 28.5 0.0 15 98-112 49-63 (128)
2 2rqh_A G1 to S phase transitio 16.4 42 0.0014 18.8 0.6 7 185-191 2-8 (26)
3 2amn_A Cathelicidin; linear he 7.7 1.2E+02 0.004 17.0 0.6 24 100-123 2-25 (26)
4 1qle_D Cytochrome AA3, ccytoch 7.6 4.4E+02 0.015 16.1 3.5 23 70-92 20-42 (43)
5 1ic9_A TH10AOX; three stranded 6.9 2.3E+02 0.0078 15.9 1.5 9 176-184 11-19 (29)
6 1zo0_A ODC-AZ, ornithine decar 5.4 4.3E+02 0.015 19.9 2.9 24 173-196 100-123 (126)
7 3ltf_D Protein spitz; receptor 5.1 3.5E+02 0.012 17.0 2.0 9 141-149 31-39 (58)
8 1p8b_A PEA albumin 1, subunit 5.1 2.6E+02 0.0089 16.9 1.1 17 132-150 9-25 (37)
9 1m56_D Cytochrome C oxidase; m 5.1 6.9E+02 0.024 15.8 3.6 23 70-92 28-50 (51)
10 3m1c_B GL, envelope glycoprote 5.0 5.6E+02 0.019 20.9 3.4 28 163-194 37-64 (204)
No 1
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa} SCOP: d.364.1.1
Probab=30.11 E-value=11 Score=28.55 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=12.7
Q ss_pred eeeccccchhHHHHH
Q psy13193 98 CYITRFTEENFATLI 112 (198)
Q Consensus 98 ~yiTRFTeEiF~~lI 112 (198)
+|+-||+|+.|++=+
T Consensus 49 ~yIvRFSEDsFGmDV 63 (128)
T 2hg6_A 49 RYIVRFSEDSFGMDV 63 (128)
T ss_dssp EEEEESCGGGCSSSS
T ss_pred eEEEEecccccCCcc
Confidence 699999999998643
No 2
>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}
Probab=16.43 E-value=42 Score=18.82 Aligned_cols=7 Identities=57% Similarity=0.975 Sum_probs=5.9
Q ss_pred CCCCCCe
Q psy13193 185 SPPVPDV 191 (198)
Q Consensus 185 ~p~~Pdv 191 (198)
+|++|||
T Consensus 2 KPFVPnv 8 (26)
T 2rqh_A 2 KPFVPNV 8 (26)
T ss_dssp CSSCCCT
T ss_pred CCccCcc
Confidence 6899987
No 3
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=7.74 E-value=1.2e+02 Score=16.97 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=18.4
Q ss_pred eccccchhHHHHHHHHHHHHHHHH
Q psy13193 100 ITRFTEENFATLIAFIFIYKAIEN 123 (198)
Q Consensus 100 iTRFTeEiF~~lIslIFI~eai~~ 123 (198)
+.||-+-.+..-++=+=+|+|+++
T Consensus 2 ~kRf~P~vi~tv~ag~nly~aik~ 25 (26)
T 2amn_A 2 VKRVWPLVIRTVIAGYNLYRAIKK 25 (26)
T ss_dssp CSCSCTTHHHHHHHHHSSSHHHHT
T ss_pred cceeeeeEEEEEeehhHHHHHHhc
Confidence 568888888888877777787764
No 4
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=7.59 E-value=4.4e+02 Score=16.12 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q psy13193 70 YMSFRLWIGLWIGFILIILVAVD 92 (198)
Q Consensus 70 yL~~r~wiGlW~~~~~ll~~a~~ 92 (198)
|+.+..|..+=...+++++++++
T Consensus 20 Fi~~~k~gt~~~~~~ll~maif~ 42 (43)
T 1qle_D 20 FIKGATWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 77788888888888878777765
No 5
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=6.86 E-value=2.3e+02 Score=15.91 Aligned_cols=9 Identities=44% Similarity=0.922 Sum_probs=7.2
Q ss_pred EEeecCCCC
Q psy13193 176 TLVGVGCTM 184 (198)
Q Consensus 176 ~~~G~~C~~ 184 (198)
+|.|++|..
T Consensus 11 tfrgpgcpt 19 (29)
T 1ic9_A 11 TFRGPGCPT 19 (29)
T ss_dssp EEECSCCCC
T ss_pred eecCCCCCc
Confidence 688999964
No 6
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=5.44 E-value=4.3e+02 Score=19.93 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=16.3
Q ss_pred cCcEEeecCCCCCCCCCCeeeeec
Q psy13193 173 RNGTLVGVGCTMSPPVPDVFLMNS 196 (198)
Q Consensus 173 ~~G~~~G~~C~~~p~~Pdv~l~S~ 196 (198)
+|-+.+-++=..-|..||+++|+-
T Consensus 100 ~GFe~v~P~hp~~P~~~d~~~M~Y 123 (126)
T 1zo0_A 100 LGFEIVRPGHPLVPKRPDACFMVY 123 (126)
T ss_dssp TCCEEECCCCSSCSSCSCCEEEEE
T ss_pred cceEEeCCCCCCCCCCCCeEEEEE
Confidence 567777666111467899999973
No 7
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=5.15 E-value=3.5e+02 Score=17.03 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=5.6
Q ss_pred CCcceeecC
Q psy13193 141 LSHDCRCIP 149 (198)
Q Consensus 141 ~~y~C~c~~ 149 (198)
..|.|.|.+
T Consensus 31 ~~~~C~C~~ 39 (58)
T 3ltf_D 31 PVYSCECAI 39 (58)
T ss_dssp EEEEEEECT
T ss_pred CCEEeECCC
Confidence 346788753
No 8
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=5.14 E-value=2.6e+02 Score=16.89 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=9.8
Q ss_pred CCccccCcCCCcceeecCC
Q psy13193 132 PTMSARNLNLSHDCRCIPP 150 (198)
Q Consensus 132 pi~~~~~~~~~y~C~c~~p 150 (198)
|+++++- ...+|+|.|-
T Consensus 9 PFemPPC--~s~~CRCIP~ 25 (37)
T 1p8b_A 9 PFEMPPC--GTSACRCIPV 25 (37)
T ss_dssp TTCSSGG--GCSSSEEECC
T ss_pred CcccCCC--CCCCeeEEEE
Confidence 5555332 2367999865
No 9
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=5.08 E-value=6.9e+02 Score=15.78 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q psy13193 70 YMSFRLWIGLWIGFILIILVAVD 92 (198)
Q Consensus 70 yL~~r~wiGlW~~~~~ll~~a~~ 92 (198)
|+.+..|..+=...++++++.++
T Consensus 28 Fi~~~k~gt~~~~~~ll~laif~ 50 (51)
T 1m56_D 28 FVRMVTWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 77788888888888777777765
No 10
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope protein, HER simplex virus, disulfide bond, HOST cell MEMB HOST endosome; HET: NAG XYL; 3.00A {Human herpesvirus 2}
Probab=5.00 E-value=5.6e+02 Score=20.92 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.0
Q ss_pred cccchhhhhccCcEEeecCCCCCCCCCCeeee
Q psy13193 163 TQLIKDECLRRNGTLVGVGCTMSPPVPDVFLM 194 (198)
Q Consensus 163 ~~l~~~~c~~~~G~~~G~~C~~~p~~Pdv~l~ 194 (198)
+..+.++=....|-|+-..| ..||+.||
T Consensus 37 aaP~v~n~~~isGIfik~hC----p~PE~ILW 64 (204)
T 3m1c_B 37 EAPSVIDYARIDGIFLRYHC----PGLDTFLW 64 (204)
T ss_dssp CCCSSCCGGGCCEEEEETTS----TTCCEEEE
T ss_pred cCCCccccccccceEEeccC----CCCceEEE
Confidence 55555544578999999999 48999998
Done!