Query psy13193
Match_columns 198
No_of_seqs 277 out of 430
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 22:33:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hg6a1 d.364.1.1 (A:1-106) Hy 33.5 4.2 0.00031 28.3 0.0 14 98-111 27-40 (106)
2 d1qled_ f.23.8.1 (D:) Bacteria 23.8 43 0.0032 19.6 3.5 24 70-93 20-43 (43)
3 d1m56d_ f.23.8.1 (D:) Bacteria 22.1 52 0.0038 19.1 3.6 24 70-93 19-42 (42)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 12.7 53 0.0038 17.4 1.7 11 107-117 9-19 (30)
5 d1hw7a_ d.193.1.1 (A:) Heat sh 6.5 1.2E+02 0.0085 22.7 2.2 26 122-147 204-229 (229)
6 d1mv8a1 a.100.1.4 (A:203-300) 6.1 1.8E+02 0.013 18.7 2.8 21 56-76 22-42 (98)
7 d1xkba1 g.3.11.1 (A:48-86) Fac 5.5 1.2E+02 0.0085 16.6 1.3 12 138-149 16-27 (39)
8 d2vj3a2 g.3.11.1 (A:453-491) N 4.6 1.1E+02 0.0077 16.8 0.6 12 138-149 17-28 (39)
9 d1su3a1 a.20.1.2 (A:32-98) Fib 4.4 1.2E+02 0.0086 18.6 0.8 9 180-192 59-67 (67)
10 d2shpa2 d.93.1.1 (A:2-110) Tyr 4.3 2.4E+02 0.018 18.0 2.6 33 119-151 71-107 (109)
No 1
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.50 E-value=4.2 Score=28.27 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=12.2
Q ss_pred eeeccccchhHHHH
Q psy13193 98 CYITRFTEENFATL 111 (198)
Q Consensus 98 ~yiTRFTeEiF~~l 111 (198)
+|+-||+|+.|++=
T Consensus 27 ~~ivRFSEDsFGmD 40 (106)
T d2hg6a1 27 RYIVRFSEDSFGMD 40 (106)
T ss_dssp EEEEESCGGGCSSS
T ss_pred eEEEEecccccCCc
Confidence 68999999999864
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=23.82 E-value=43 Score=19.56 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc
Q psy13193 70 YMSFRLWIGLWIGFILIILVAVDA 93 (198)
Q Consensus 70 yL~~r~wiGlW~~~~~ll~~a~~a 93 (198)
|+.+..|..+-..++++.++++|+
T Consensus 20 Fi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 20 FIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888888888888774
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=22.07 E-value=52 Score=19.08 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc
Q psy13193 70 YMSFRLWIGLWIGFILIILVAVDA 93 (198)
Q Consensus 70 yL~~r~wiGlW~~~~~ll~~a~~a 93 (198)
|+.+..|..+=..++++.++++|+
T Consensus 19 Fik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888888888888774
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.71 E-value=53 Score=17.39 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=8.0
Q ss_pred hHHHHHHHHHH
Q psy13193 107 NFATLIAFIFI 117 (198)
Q Consensus 107 iF~~lIslIFI 117 (198)
+|+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888887664
No 5
>d1hw7a_ d.193.1.1 (A:) Heat shock protein 33, Hsp33 {Escherichia coli [TaxId: 562]}
Probab=6.47 E-value=1.2e+02 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=16.8
Q ss_pred HHHHHcccccCCccccCcCCCcceee
Q psy13193 122 ENVLSIGKRFPTMSARNLNLSHDCRC 147 (198)
Q Consensus 122 ~~l~~~f~~~pi~~~~~~~~~y~C~c 147 (198)
+.|.++|++.++..-......|.|+|
T Consensus 204 ~ll~~lf~~~~~~i~~~~~v~f~C~C 229 (229)
T d1hw7a_ 204 EVLWRLYHEEEVTVYDPQDVEFKCTC 229 (229)
T ss_dssp HHHHHHHTTSCCCCCCCCCCCCCCCC
T ss_pred HHHHHHhCCCCccCCcCCccCccCCC
Confidence 34557788777665333445689998
No 6
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.05 E-value=1.8e+02 Score=18.72 Aligned_cols=21 Identities=5% Similarity=-0.350 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCcchhHHHHH
Q psy13193 56 ILVAVDASALNSWDYMSFRLW 76 (198)
Q Consensus 56 ~~~ly~fc~~~~l~yL~~r~w 76 (198)
.--++++|++.|.||-..+--
T Consensus 22 ~Nel~~lc~~~g~d~~~v~~~ 42 (98)
T d1mv8a1 22 ANEIGNIAKAVGVDGREVMDV 42 (98)
T ss_dssp HHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHH
Confidence 567999999999998877543
No 7
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.52 E-value=1.2e+02 Score=16.65 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=8.9
Q ss_pred CcCCCcceeecC
Q psy13193 138 NLNLSHDCRCIP 149 (198)
Q Consensus 138 ~~~~~y~C~c~~ 149 (198)
+....|.|.|.+
T Consensus 16 ~~~~~y~C~C~~ 27 (39)
T d1xkba1 16 DGLGEYTCTCLE 27 (39)
T ss_dssp CCSSSCCEECCT
T ss_pred CCCCCEEEECCC
Confidence 456679999964
No 8
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=1.1e+02 Score=16.83 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=8.7
Q ss_pred CcCCCcceeecC
Q psy13193 138 NLNLSHDCRCIP 149 (198)
Q Consensus 138 ~~~~~y~C~c~~ 149 (198)
|....|.|.|.+
T Consensus 17 ~~~~~y~C~C~~ 28 (39)
T d2vj3a2 17 DQIGEFQCICMP 28 (39)
T ss_dssp ECSSCEEEECCT
T ss_pred CCCCCEEEeCCC
Confidence 445679999964
No 9
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.39 E-value=1.2e+02 Score=18.63 Aligned_cols=9 Identities=56% Similarity=0.903 Sum_probs=6.3
Q ss_pred cCCCCCCCCCCee
Q psy13193 180 VGCTMSPPVPDVF 192 (198)
Q Consensus 180 ~~C~~~p~~Pdv~ 192 (198)
+-|| +|||+
T Consensus 59 PRCG----vpDva 67 (67)
T d1su3a1 59 PRCG----VPDVA 67 (67)
T ss_dssp CBCS----SCSCC
T ss_pred CCCC----CCCCC
Confidence 5677 88874
No 10
>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.35 E-value=2.4e+02 Score=17.97 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHHHHcccccCCcc-ccC---cCCCcceeecCCC
Q psy13193 119 KAIENVLSIGKRFPTMS-ARN---LNLSHDCRCIPPD 151 (198)
Q Consensus 119 eai~~l~~~f~~~pi~~-~~~---~~~~y~C~c~~p~ 151 (198)
..+..|+.-|+.+|+.. ..+ ..-.+.|.|..|.
T Consensus 71 ~sl~~LV~~y~~~~~~~~~~~~~~~~L~~P~~~~~Ps 107 (109)
T d2shpa2 71 ATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPT 107 (109)
T ss_dssp SSHHHHHHHHHTCTTCSBSSSSCBCCCCEECCCCCCT
T ss_pred CCHHHHHHHHHHCCCCcccCCCCeeeccccCCCCCCC
Confidence 34577888888888765 222 1223566666553
Done!