RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13193
(198 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 4e-04
Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 63/190 (33%)
Query: 15 LIILVAVDASALVCY-ITRFTNSWDYMSFRLWI-GLWIGFILIILVAVDASALNSWDYMS 72
LI ++ L Y +T + R ++ G G ++ AV + +SW+ S
Sbjct: 240 LIGVIQ-----LAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSWE--S 291
Query: 73 FR------LWIGLWIGFILIILVAVDASALVCYITRFTEENFATLIAFIFIYKAIENVLS 126
F + + +IG R E T + + ++EN
Sbjct: 292 FFVSVRKAITVLFFIGV------------------RCYEAYPNTSLPPSILEDSLEN--- 330
Query: 127 IGKRFPT-M-SARNLNLSH-------DCRCIPPDDTDPIGSILNSTQLIKDECLRRNGTL 177
+ P+ M S NL +P I S++N +N +
Sbjct: 331 -NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNG---------AKNLVV 379
Query: 178 VGVGCTMSPP 187
G PP
Sbjct: 380 SG------PP 383
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein,
RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A
{Methanosarcina acetivorans}
Length = 194
Score = 28.4 bits (63), Expect = 1.3
Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 1 MSFRLWIGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFILIILVAV 60
M+ LW +I +I + + + + L ++ + +
Sbjct: 1 MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA 60
Query: 61 DASALNSWDYMSFRLWIGLWIGFILIIL 88
S+ ++ I I+ L
Sbjct: 61 VFSSYLDSFNINLPDSI-RLFALIVTFL 87
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 28.3 bits (64), Expect = 1.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 169 ECLRRNGTLVGVGCTMSPPVPDVFLM 194
+RR GT+ G +F +
Sbjct: 251 GMVRRGGTIALNGLPPGDFGTPIFDV 276
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.2 bits (61), Expect = 3.7
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 169 ECLRRNGTLVGVGCTMSPPVPDVFLMN 195
LR NG + +G +S + +
Sbjct: 231 FSLRPNGHFLTIG-LLSGIQVNWAEIV 256
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 27.2 bits (60), Expect = 3.9
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 102 RFTEENFATLIAFIFIYKAIENVLS-------IGKRFPTMSARNL--NLSHDCRCIPPDD 152
RF E L+ + E GK F + AR + +
Sbjct: 413 RFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDSFDIEV 472
Query: 153 TD-PIGSILNSTQLIKD 168
P+GS +N + L K
Sbjct: 473 GTSPLGSSVNFSSLRKA 489
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 26.8 bits (60), Expect = 4.7
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 169 ECLRRNGTLVGVGCTMSPPVPDVFLM 194
+RR G V VG +F
Sbjct: 249 NSIRRGGACVLVGLPPEEMPIPIFDT 274
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 26.9 bits (60), Expect = 4.9
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 169 ECLRRNGTL--VGVGCTMSPPVPDVFL 193
L R G L VG G + P V
Sbjct: 273 YLLGRMGRLIIVGYGGELRFPTIRVIS 299
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 26.8 bits (60), Expect = 5.5
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 169 ECLRRNGTLVGVGCTMSPPVP-DVFLM 194
+R NGT V VG DVF
Sbjct: 257 RYVRANGTTVLVGMPAGAKCCSDVFNQ 283
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 26.3 bits (59), Expect = 6.9
Identities = 3/43 (6%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 152 DTDPIGSILNSTQLIKDECLRRNGTLVGVGCTMSPPVPDVFLM 194
+ ++ + K ++ G +V + + +
Sbjct: 249 VCASSLTDIDFNIMPK--AMKVGGRIVSISIPEQHEMLSLKPY 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.483
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,129,646
Number of extensions: 176229
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 34
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.2 bits)