RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13193
         (198 letters)



>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex
           cytochrome b subunit, FrdC {Wolinella succinogenes
           [TaxId: 844]}
          Length = 254

 Score = 25.3 bits (55), Expect = 4.9
 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 15/112 (13%)

Query: 2   SFRLWIGLWIGFILIILVAVDASALVCYITRFTNSWDYMSFRLWIGLWIGFILIILVAV- 60
           +   WI    GF +  L +V    ++      T      SFR+         L++L AV 
Sbjct: 123 TTLWWIQAMTGFAMFFLGSVHLYIMM--TQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVE 180

Query: 61  ------------DASALNSWDYMSFRLWIGLWIGFILIILVAVDASALVCYI 100
                            +       R  +      +   L+ +       Y+
Sbjct: 181 LHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYV 232


>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein
          AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 171

 Score = 24.8 bits (53), Expect = 6.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 17 ILVAVDASALVCYITRFTNS 36
          ++VAV+AS +  Y     + 
Sbjct: 4  VMVAVNASTIKDYPNPSISC 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.483 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,766
Number of extensions: 34323
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 14
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.5 bits)