BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13200
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JSH|B Chain B, Crystal Structure Of H9 Haemagglutinin Complexed With Lsta
           Receptor Analog
 pdb|1JSI|B Chain B, Crystal Structure Of H9 Haemagglutinin Bound To Lstc
           Receptor Analog
 pdb|1JSD|B Chain B, Crystal Structure Of Swine H9 Haemagglutinin
          Length = 176

 Score = 27.3 bits (59), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 12/75 (16%)

Query: 68  LQMEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAE--KCVDKHIALL 125
           +  EF + +TRL       N++I D++       D+  Y  +     E  K +D+H A +
Sbjct: 66  IDHEFSEIETRLNMI----NNKIDDQI------QDIWTYNAELLVLLENQKTLDEHDANV 115

Query: 126 PTLFQKIKKYLSDNS 140
             L+ K+K+ L  N+
Sbjct: 116 NNLYNKVKRALGSNA 130


>pdb|4I78|C Chain C, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
           From A/little Yellow-shouldered Bat/guatemala/060/2010
           (h17n10)
 pdb|4I78|D Chain D, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
           From A/little Yellow-shouldered Bat/guatemala/060/2010
           (h17n10)
          Length = 181

 Score = 25.8 bits (55), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 71  EFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCA----EKCVDKHIALLP 126
           EF + + R+Q      +D + D +        +D ++   E       E+ +D H A + 
Sbjct: 69  EFNRLELRIQHL----SDRVDDAL--------LDIWSYNTELLVLLENERTLDFHDANVK 116

Query: 127 TLFQKIKKYLSDNS 140
            LF+K+K  L DN+
Sbjct: 117 NLFEKVKAQLKDNA 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.131    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,759,553
Number of Sequences: 62578
Number of extensions: 134876
Number of successful extensions: 322
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)