Query psy13200
Match_columns 142
No_of_seqs 105 out of 123
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:44:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxr_B Mitochondrial import in 90.8 0.85 2.9E-05 31.5 6.6 64 67-136 23-86 (95)
2 3cjh_B Mitochondrial import in 90.3 0.62 2.1E-05 29.6 5.2 58 70-134 5-62 (64)
3 2bsk_B Mitochondrial import in 84.9 0.74 2.5E-05 31.2 3.2 68 64-137 7-74 (90)
4 3cjh_A Mitochondrial import in 81.1 2 6.8E-05 27.3 3.9 28 112-139 31-58 (64)
5 3dxr_A Mitochondrial import in 80.1 11 0.00038 25.3 8.0 58 70-134 21-78 (89)
6 2bsk_A Mitochondrial import in 76.7 8.3 0.00028 25.9 6.2 56 73-135 15-70 (89)
7 2plx_B Peptide inhibitor; heli 75.5 1.7 5.8E-05 22.9 1.9 24 35-58 2-25 (26)
8 3dxr_B Mitochondrial import in 61.8 22 0.00077 24.2 5.8 44 33-77 40-87 (95)
9 2cmy_B Beta trypsin, veronica 60.4 3.5 0.00012 22.9 1.2 26 34-59 6-31 (34)
10 3twe_A Alpha4H; unknown functi 40.5 20 0.00067 18.9 2.1 14 68-81 6-19 (27)
11 3mxz_A Tubulin-specific chaper 27.6 1.6E+02 0.0054 20.6 6.0 57 63-138 22-78 (116)
12 1h7c_A Tubulin-specific chaper 26.2 1.6E+02 0.0055 20.2 8.0 58 62-138 20-77 (108)
13 3ci9_A Heat shock factor-bindi 24.2 93 0.0032 18.6 3.5 22 60-81 3-24 (48)
14 4g3b_A Alpha4F3D; alpha helix, 24.0 55 0.0019 17.0 2.1 13 70-82 8-20 (26)
No 1
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.85 Score=31.52 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Q psy13200 67 YLQMEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKKYL 136 (142)
Q Consensus 67 ~vq~El~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~~l 136 (142)
..+.|+..|++-+++=+-.|-+|=-+.--++ .++. ..=+.|+..||++|+..--.|.+|+.+..
T Consensus 23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~---~~L~---~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~ 86 (95)
T 3dxr_B 23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSE---GELN---KNESSCLDRCVAKYFETNVQVGENMQKMG 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCC---SSCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988888888765421011 2222 23457999999999999888888887643
No 2
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=90.35 E-value=0.62 Score=29.57 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHH
Q psy13200 70 MEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKK 134 (142)
Q Consensus 70 ~El~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~ 134 (142)
.+++.||+-+++=+-.|.+|=-+.+ |+++ +. ..=++|+..||++|+..--.+.+|+.+
T Consensus 5 ~~~~~~~~~~~~lt~~Cf~kCv~~~-~~~~---L~---~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 5 NSKQKVQMSIHQFTNICFKKCVESV-NDSN---LS---SQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCC-SSSS---CC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCc---CC---hhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777655432 2222 11 234579999999999987777777654
No 3
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=84.89 E-value=0.74 Score=31.24 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHHHHh
Q psy13200 64 AQKYLQMEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKKYLS 137 (142)
Q Consensus 64 aq~~vq~El~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~~l~ 137 (142)
.+-.-+.++..|++-+++=+-.|.+|=-+.--++++ +. ..=++|+..||++|+..--.|.+|+.+...
T Consensus 7 ~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~---L~---~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 7 QQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAE---LS---KGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSS---CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCc---CC---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445567778888877777777765432112222 11 234579999999999998888888876543
No 4
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=81.08 E-value=2 Score=27.35 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHhhC
Q psy13200 112 SCAEKCVDKHIALLPTLFQKIKKYLSDN 139 (142)
Q Consensus 112 ~Cv~~Cvd~hi~llP~l~~r~k~~l~~~ 139 (142)
+|+..||++|+..--.+.+++.+.+...
T Consensus 31 ~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~ 58 (64)
T 3cjh_A 31 ACIDQCLAKYMRSWNVISKAYISRIQNA 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5999999999999888888887766543
No 5
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=80.06 E-value=11 Score=25.26 Aligned_cols=58 Identities=14% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHH
Q psy13200 70 MEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKK 134 (142)
Q Consensus 70 ~El~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~ 134 (142)
..+..|++-+++=+-.|.+|=-+.++ +++ +. ..=++|+..||++|+..--.|.+|+.+
T Consensus 21 ~q~k~~~~l~~~lte~Cf~kCv~~~~-~~~---L~---~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~ 78 (89)
T 3dxr_A 21 KQMKDFMRLYSNLVERCFTDCVNDFT-TSK---LT---NKEQTCIMKCSEKFLKHSERVGQRFQE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-SSS---CC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCC---CC---chHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777776554322 221 11 234579999999999988888888765
No 6
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=76.72 E-value=8.3 Score=25.93 Aligned_cols=56 Identities=11% Similarity=0.358 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHHH
Q psy13200 73 EQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKKY 135 (142)
Q Consensus 73 ~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~~ 135 (142)
.+|++-+++=+-.|.+|=-+.++ +++ +. ..=++|+..||++|+..--.|.+|+.+.
T Consensus 15 ~~~~~l~n~lte~Cf~KCv~~~~-~~~---L~---~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 70 (89)
T 2bsk_A 15 KEFLGTYNKLTETCFLDCVKDFT-TRE---VK---PEETTCSEHCLQKYLKMTQRISMRFQEY 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS-SSS---CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCC-CCc---CC---chHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666543322 211 11 2345799999999999988888888765
No 7
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=75.46 E-value=1.7 Score=22.93 Aligned_cols=24 Identities=29% Similarity=0.822 Sum_probs=20.3
Q ss_pred hhhhhccccCCCHHHHHHHHHhcC
Q psy13200 35 CSVKCCENKDATMEGVQECLEVCS 58 (142)
Q Consensus 35 Caa~Ccd~~~~s~~~v~~Cve~C~ 58 (142)
|-.-|...+-.|.+-+.+|+++|.
T Consensus 2 ckvmcyaqrhsspellrrcldnce 25 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDNCE 25 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHHHT
T ss_pred ceEEeehhhcCCHHHHHHHHhccc
Confidence 556677778889999999999995
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=61.76 E-value=22 Score=24.21 Aligned_cols=44 Identities=16% Similarity=0.465 Sum_probs=29.6
Q ss_pred hhhhhhhccc----cCCCHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH
Q psy13200 33 HRCSVKCCEN----KDATMEGVQECLEVCSAPFMRAQKYLQMEFEQYQT 77 (142)
Q Consensus 33 f~Caa~Ccd~----~~~s~~~v~~Cve~C~~pl~~aq~~vq~El~~FQ~ 77 (142)
-.|=.+|.+. +..+..+ +.||.||-..--.+.+.|-.-|.+.+.
T Consensus 40 e~Cf~KCV~~~~~~~~L~~~E-~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 40 NNCYKKCINTSYSEGELNKNE-SSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp HHHHHHHCCCTTCCSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788772 2223333 489999999999999998776665543
No 9
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=60.38 E-value=3.5 Score=22.95 Aligned_cols=26 Identities=27% Similarity=0.773 Sum_probs=18.6
Q ss_pred hhhhhhccccCCCHHHHHHHHHhcCh
Q psy13200 34 RCSVKCCENKDATMEGVQECLEVCSA 59 (142)
Q Consensus 34 ~Caa~Ccd~~~~s~~~v~~Cve~C~~ 59 (142)
.|-.-|...+-.|.+-+.+|+++|..
T Consensus 6 qckvmcyaqrhsspellrrcldncek 31 (34)
T 2cmy_B 6 QCKVMCYAQRHSSPELLRRCLDNCEK 31 (34)
T ss_dssp -CHHHHHHBC--CCHHHHHHHHHC--
T ss_pred HhhHHHHHhhcCCHHHHHHHHHhhhh
Confidence 46677888888899999999999964
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.47 E-value=20 Score=18.92 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy13200 68 LQMEFEQYQTRLQR 81 (142)
Q Consensus 68 vq~El~~FQ~RLqR 81 (142)
+-.||+.+|+||..
T Consensus 6 lykeledlqerlrk 19 (27)
T 3twe_A 6 LYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44799999999964
No 11
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=27.59 E-value=1.6e+02 Score=20.58 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHHHHhh
Q psy13200 63 RAQKYLQMEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKKYLSD 138 (142)
Q Consensus 63 ~aq~~vq~El~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~~l~~ 138 (142)
+=..+-+.|+.....|+.+ .++ .+..+-++++ + ....++...+||.+.+||..++..
T Consensus 22 KE~~~Y~kE~~~q~~kiek--------mk~---e~~dey~iKk---q-----~evL~Et~~mipd~~~RL~~a~~~ 78 (116)
T 3mxz_A 22 KELHSYEKEVEREAAKTAD--------MKD---KGADPYDLKQ---Q-----ENVLGESRMMIPDCHKRLESALAD 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHH---TTCCHHHHHH---H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHh---ccCCHHHHHH---H-----HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3345567899999999965 232 1333555554 2 456789999999999999998764
No 12
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=26.19 E-value=1.6e+02 Score=20.18 Aligned_cols=58 Identities=9% Similarity=0.282 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhcccHHHHHHHHHHHhh
Q psy13200 62 MRAQKYLQMEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKKYLSD 138 (142)
Q Consensus 62 ~~aq~~vq~El~~FQ~RLqRC~~~C~Dk~kd~~~~~~~e~~~~~~~~~~e~Cv~~Cvd~hi~llP~l~~r~k~~l~~ 138 (142)
.+=..+-+.|+...+.||++ |... |+.+-++.+ .....++...+||.+.+||..++..
T Consensus 20 ~KE~~~Y~kE~~~q~~riek--~k~e---------~~Dey~iKk--------q~evl~Et~~mipd~~~Rl~~a~~~ 77 (108)
T 1h7c_A 20 VKERVMYEKEAKQQEEKIEK--MRAE---------DGENYDIKK--------QAEILQESRMMIPDCQRRLEAAYLD 77 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHH---------HCSCTHHHH--------HHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhc---------CCCHHHHHH--------HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445667899999999998 4332 122455654 2456789999999999999998764
No 13
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=24.18 E-value=93 Score=18.63 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy13200 60 PFMRAQKYLQMEFEQYQTRLQR 81 (142)
Q Consensus 60 pl~~aq~~vq~El~~FQ~RLqR 81 (142)
.....-++|++=|++.|+|++.
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~ 24 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQT 24 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999884
No 14
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=24.01 E-value=55 Score=17.01 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy13200 70 MEFEQYQTRLQRC 82 (142)
Q Consensus 70 ~El~~FQ~RLqRC 82 (142)
.||+..|+||..-
T Consensus 8 keled~qerlrk~ 20 (26)
T 4g3b_A 8 KELEDXQERLRKX 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999653
Done!