RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13200
         (142 letters)



>gnl|CDD|218759 pfam05811, DUF842, Eukaryotic protein of unknown function (DUF842).
            This family consists of a number of conserved
           eukaryotic proteins of unknown function. The sequences
           carry three sets of CxxxC motifs, which might suggest a
           type of zinc-finger formation.
          Length = 131

 Score =  135 bits (341), Expect = 6e-42
 Identities = 59/130 (45%), Positives = 88/130 (67%), Gaps = 3/130 (2%)

Query: 7   QKINNAVMKIMVDIDKQFLRKMQADMHRCSVKCCENKDATMEGVQECLEVCSAPFMRAQK 66
           +++ +AV  ++ D+D+  LRKMQ  M RC+ +CC++  A+ME VQ C+E CS P  +AQ+
Sbjct: 5   ERVQSAVDSMLDDLDRTILRKMQKKMFRCAAECCDDSRASMEEVQNCVERCSVPLAKAQQ 64

Query: 67  YLQMEFEQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVDKHIALLP 126
           Y+Q E  Q+Q RLQRC++ C D+ KD  G NP +SD     ++ E C  KCVDKH+ LLP
Sbjct: 65  YVQSELSQFQNRLQRCLMVCQDKFKDAKGPNPNESD---AAKEMERCVNKCVDKHVNLLP 121

Query: 127 TLFQKIKKYL 136
            + +++KK L
Sbjct: 122 EIVKRMKKTL 131


>gnl|CDD|213914 TIGR04301, ODC_inducible, ornithine decarboxylase SpeF.  Members of
           this family are known or trusted examples of ornithine
           decarboxylase, all encoded in the immediate vicinity of
           an ornithine-putrescine antiporter. Decarboxylation of
           ornithine to putrescine, followed by exchange of a
           putrescine for a new ornithine, is a proton-motive cycle
           that can be induced by low pH and protect a bacterium
           against transient exposure to acidic conditions.
          Length = 719

 Score = 30.8 bits (70), Expect = 0.20
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 99  KQSDMDAYTRQFESCAEKCVDKHIALLPTLFQKIKKYLSDNSS 141
            +SD+D Y RQ E+ A K  +K   LLP  F  + KY+   +S
Sbjct: 85  NESDIDFYGRQIETAATKYEEK---LLPPFFGALVKYVEQGNS 124


>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
          guanylyltransferase, C-terminal Left-handed parallel
          beta helix (LbH) domain: Mannose-1-phosphate
          guanylyltransferase is also known as GDP-mannose
          pyrophosphorylase. It catalyzes the synthesis of
          GDP-mannose from GTP and mannose-1-phosphate, and is
          involved in the maintenance of cell wall integrity and
          glycosylation. Similar to ADP-glucose
          pyrophosphorylase, it contains an N-terminal catalytic
          domain that resembles a dinucleotide-binding Rossmann
          fold and a C-terminal LbH fold domain, presumably with
          4 turns, each containing three imperfect tandem repeats
          of a hexapeptide repeat motif
          (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
          hexapeptide repeats are often enzymes showing
          acyltransferase activity.
          Length = 80

 Score = 28.7 bits (64), Expect = 0.39
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 78 RLQRCVLDCNDEIKD 92
          RLQRCV+  N  ++D
Sbjct: 31 RLQRCVILSNSTVRD 45


>gnl|CDD|218842 pfam05987, DUF898, Bacterial protein of unknown function (DUF898). 
           This family consists of several bacterial proteins of
           unknown function. Some of the family members are
           described as putative membrane proteins.
          Length = 339

 Score = 28.3 bits (64), Expect = 1.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 123 ALLPTLFQKIKKYLSDNSSY 142
            L P    ++K+YL +NS +
Sbjct: 149 LLAPWATARLKRYLVNNSRF 168


>gnl|CDD|185673 cd00560, PanC, Pantoate-beta-alanine ligase.  PanC
           Pantoate-beta-alanine ligase, also known as pantothenate
           synthase, catalyzes the formation of pantothenate from
           pantoate and alanine.  PanC  belongs to a large
           superfamily of nucleotidyltransferases that includes ,
           ATP sulfurylase (ATPS), phosphopantetheine
           adenylyltransferase (PPAT), and the amino-acyl tRNA
           synthetases. The enzymes of this family are structurally
           similar and share a dinucleotide-binding domain.
          Length = 277

 Score = 27.1 bits (61), Expect = 2.9
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 96  VNPKQ----SDMDAYTRQFESCAEKCVDKHIALL 125
           VNP Q     D+D Y R  E+      +  + LL
Sbjct: 57  VNPLQFGPNEDLDRYPRTLEADLALLEEAGVDLL 90


>gnl|CDD|223491 COG0414, PanC, Panthothenate synthetase [Coenzyme metabolism].
          Length = 285

 Score = 26.8 bits (60), Expect = 3.9
 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 4/26 (15%)

Query: 96  VNPKQ----SDMDAYTRQFESCAEKC 117
           VNP Q     D+D Y R  E   E  
Sbjct: 57  VNPLQFGPNEDLDRYPRTLERDLELL 82


>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
          Length = 764

 Score = 26.4 bits (58), Expect = 5.9
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 73  EQYQTRLQRCVLDCNDEIKDKMGVNPKQSDMDAYTRQFESCAEKCVD 119
           +QY+   ++ + D   +  + +   P   DMD     F S   + +D
Sbjct: 108 DQYKQFYKQIIKDNKSKTANHVFDIPNNGDMDILYTYFNSPNTRGID 154


>gnl|CDD|217914 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with Vps53
           and Vps54 to form a multi- subunit complex involved in
           regulating membrane trafficking events.
          Length = 511

 Score = 26.2 bits (58), Expect = 8.3
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 54  LEVCSAPFMRAQKYLQMEFEQYQTRLQRCVLDCNDEIKDKMGV 96
           LE+  A      K     F+ Y  RL +   +      D MGV
Sbjct: 189 LELRDAYIDTMNKIYLSYFKAYIRRLTKLQFEEVATKDDLMGV 231


>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
          Length = 256

 Score = 25.8 bits (57), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 22 KQFLRKMQADMHR 34
          +Q L +MQADM +
Sbjct: 85 RQLLEQMQADMRQ 97


>gnl|CDD|227546 COG5221, DOP1, Dopey and related predicted leucine zipper
           transcription factors [Transcription].
          Length = 1618

 Score = 26.0 bits (57), Expect = 9.3
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 9/44 (20%)

Query: 101 SDMDAYTRQFESCAEKCVDK---------HIALLPTLFQKIKKY 135
           ++MD    ++E+   K +D          +I+LL +L + ++K+
Sbjct: 8   NNMDEKREKYEAEMTKKLDAFKTVKEWSDYISLLSSLDKTLQKF 51


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,639,509
Number of extensions: 539071
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 18
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)