RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13200
         (142 letters)



>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
           domain {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 87

 Score = 24.8 bits (54), Expect = 1.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 104 DAYTRQFESCAEKCVDKHIALLPTLFQ 130
           DAY ++ +    +  D  I L  T+F 
Sbjct: 12  DAYLKEAKGRVLEIRDNAILLDQTIFY 38


>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 25.6 bits (56), Expect = 2.4
 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 23  QFLRKMQADMHRCSVKCCENKDATMEGVQECLEVCSAPFMRAQKYLQMEFEQYQTRLQRC 82
           +  R+ Q  + R +        + +       E  + P   + + L+         + RC
Sbjct: 161 EAFRQFQFKVKRENFCNIHV--SLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVVCRC 218

Query: 83  VLDCNDEIKDKM 94
               +  +K+K+
Sbjct: 219 SNPLDTSVKEKI 230


>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
           4513]}
          Length = 500

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 10/48 (20%)

Query: 22  KQFLRKMQADMHRCSVKCC--------ENKDATMEGVQECLEVCSAPF 61
           K F+ +M A++ R                 + ++E + +  +    PF
Sbjct: 429 KTFVDRMHANLPRD--PYVDPMAPLPRSGPEISIEMILQAAQPKIQPF 474


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 502,419
Number of extensions: 21635
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 15
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)