Query psy13202
Match_columns 242
No_of_seqs 194 out of 1277
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:46:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865|consensus 100.0 4.5E-51 9.6E-56 363.4 17.9 210 1-210 157-410 (545)
2 cd02663 Peptidase_C19G A subfa 100.0 1.2E-48 2.5E-53 339.3 20.8 207 1-208 27-300 (300)
3 cd02668 Peptidase_C19L A subfa 100.0 2.9E-46 6.3E-51 327.5 19.6 203 1-208 57-324 (324)
4 cd02671 Peptidase_C19O A subfa 100.0 7.4E-45 1.6E-49 318.8 20.0 198 5-208 73-332 (332)
5 cd02660 Peptidase_C19D A subfa 100.0 2.4E-44 5.3E-49 315.5 20.0 206 1-208 51-328 (328)
6 cd02661 Peptidase_C19E A subfa 100.0 3.9E-44 8.4E-49 310.2 19.5 208 1-208 50-304 (304)
7 cd02664 Peptidase_C19H A subfa 100.0 2.1E-44 4.5E-49 316.1 17.9 202 1-208 46-327 (327)
8 cd02667 Peptidase_C19K A subfa 100.0 9E-44 1.9E-48 305.7 18.0 187 17-208 31-279 (279)
9 cd02657 Peptidase_C19A A subfa 100.0 3.6E-43 7.9E-48 305.2 18.8 202 1-208 49-305 (305)
10 cd02658 Peptidase_C19B A subfa 100.0 1.5E-42 3.3E-47 302.2 18.5 199 1-208 50-311 (311)
11 cd02659 peptidase_C19C A subfa 100.0 1.2E-41 2.5E-46 299.2 19.8 211 1-212 50-334 (334)
12 cd02669 Peptidase_C19M A subfa 100.0 3.4E-40 7.4E-45 299.5 18.7 205 1-208 168-440 (440)
13 COG5533 UBP5 Ubiquitin C-termi 100.0 7E-39 1.5E-43 266.9 16.1 200 9-210 134-414 (415)
14 cd02673 Peptidase_C19Q A subfa 100.0 5E-39 1.1E-43 270.6 15.0 184 18-208 14-245 (245)
15 cd02674 Peptidase_C19R A subfa 100.0 1.4E-38 3.1E-43 265.4 16.2 185 14-208 7-230 (230)
16 KOG1866|consensus 100.0 8.3E-40 1.8E-44 297.1 1.8 213 1-215 146-439 (944)
17 cd02662 Peptidase_C19F A subfa 100.0 2.7E-37 5.9E-42 260.0 16.9 155 36-208 33-240 (240)
18 COG5560 UBP12 Ubiquitin C-term 100.0 3.4E-38 7.4E-43 282.9 11.4 135 76-211 676-823 (823)
19 cd02665 Peptidase_C19I A subfa 100.0 6.9E-37 1.5E-41 253.8 11.7 161 36-208 21-228 (228)
20 KOG0944|consensus 100.0 1.7E-34 3.7E-39 260.8 15.5 205 1-211 358-763 (763)
21 KOG1868|consensus 100.0 5.7E-35 1.2E-39 270.4 12.0 212 3-215 356-651 (653)
22 KOG1867|consensus 100.0 3.8E-34 8.3E-39 260.0 11.6 211 2-214 212-488 (492)
23 COG5077 Ubiquitin carboxyl-ter 100.0 2.1E-34 4.6E-39 262.6 3.5 225 1-230 240-531 (1089)
24 PF00443 UCH: Ubiquitin carbox 100.0 1E-32 2.3E-37 232.6 12.9 192 1-207 55-269 (269)
25 cd02257 Peptidase_C19 Peptidas 100.0 8.5E-32 1.8E-36 224.0 17.3 183 15-208 8-255 (255)
26 cd02670 Peptidase_C19N A subfa 100.0 1.3E-31 2.8E-36 224.0 12.7 150 36-208 22-241 (241)
27 KOG4598|consensus 100.0 1.6E-32 3.4E-37 248.5 5.2 208 6-216 114-447 (1203)
28 KOG1873|consensus 100.0 6.2E-32 1.3E-36 246.4 4.2 136 74-210 677-877 (877)
29 KOG1864|consensus 100.0 1.3E-30 2.9E-35 240.5 10.9 199 13-211 298-573 (587)
30 cd02672 Peptidase_C19P A subfa 100.0 6.7E-29 1.5E-33 211.7 15.2 162 40-208 69-268 (268)
31 COG5207 UBP14 Isopeptidase T [ 100.0 3.7E-29 8.1E-34 220.3 11.9 204 3-210 356-749 (749)
32 cd02666 Peptidase_C19J A subfa 99.9 1.2E-27 2.5E-32 210.3 10.9 175 1-208 70-343 (343)
33 KOG1863|consensus 99.9 2.9E-27 6.3E-32 233.4 7.8 222 1-226 219-501 (1093)
34 KOG1870|consensus 99.9 1.8E-26 4E-31 222.8 5.3 137 74-211 695-842 (842)
35 PF13423 UCH_1: Ubiquitin carb 99.9 3.8E-23 8.3E-28 179.0 14.4 188 1-191 45-295 (295)
36 KOG1871|consensus 99.9 6.7E-22 1.4E-26 170.1 7.5 195 13-211 118-420 (420)
37 KOG1872|consensus 99.8 7.2E-21 1.6E-25 167.5 4.5 203 1-210 157-469 (473)
38 KOG2026|consensus 99.8 8.5E-19 1.8E-23 150.6 9.0 197 1-210 180-441 (442)
39 KOG1275|consensus 99.1 4.1E-10 9E-15 106.3 11.2 112 96-207 702-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 97.9 1E-05 2.2E-10 67.3 4.0 81 97-190 172-252 (275)
41 KOG1870|consensus 97.6 0.00013 2.9E-09 71.7 7.0 56 2-57 301-356 (842)
42 KOG3556|consensus 93.6 0.063 1.4E-06 49.3 3.2 85 36-141 455-549 (724)
43 PF05408 Peptidase_C28: Foot-a 88.5 1.1 2.3E-05 35.9 5.0 50 155-212 128-177 (193)
44 COG3478 Predicted nucleic-acid 82.1 1.3 2.8E-05 29.0 2.2 40 94-133 3-44 (68)
45 PF02099 Josephin: Josephin; 72.5 7.6 0.00017 30.5 4.6 33 155-193 98-130 (157)
46 PF01473 CW_binding_1: Putativ 70.7 5 0.00011 19.4 2.1 14 175-189 3-16 (19)
47 PF09855 DUF2082: Nucleic-acid 65.6 6.2 0.00013 26.0 2.3 33 96-128 1-35 (64)
48 PF03292 Pox_P4B: Poxvirus P4B 59.7 14 0.0003 35.1 4.2 68 118-190 479-569 (666)
49 KOG2935|consensus 57.9 2.1 4.7E-05 35.9 -1.1 68 155-228 102-179 (315)
50 PF10748 DUF2531: Protein of u 57.4 55 0.0012 24.9 6.5 64 155-224 37-114 (132)
51 PF03412 Peptidase_C39: Peptid 51.0 38 0.00082 24.8 4.8 47 159-210 78-129 (131)
52 cd02420 Peptidase_C39D A sub-f 51.0 32 0.00069 24.9 4.4 44 159-206 77-124 (125)
53 PF12252 SidE: Dot/Icm substra 47.4 20 0.00044 36.3 3.4 39 143-188 43-81 (1439)
54 cd02418 Peptidase_C39B A sub-f 38.3 1.2E+02 0.0026 22.1 5.9 50 159-209 79-133 (136)
55 PF08715 Viral_protease: Papai 38.2 43 0.00094 29.5 3.8 38 16-54 143-180 (320)
56 cd01269 PLX Pollux (PLX) Phosp 37.1 1.3E+02 0.0029 22.6 5.6 24 155-178 84-107 (129)
57 PF07754 DUF1610: Domain of un 36.6 18 0.00038 19.0 0.7 10 94-103 15-24 (24)
58 PF14690 zf-ISL3: zinc-finger 36.5 67 0.0015 19.0 3.5 33 96-128 3-43 (47)
59 PF14509 GH97_C: Glycosyl-hydr 36.1 28 0.0006 25.2 1.9 43 169-211 13-63 (103)
60 cd02425 Peptidase_C39F A sub-f 35.8 67 0.0014 23.1 4.1 37 170-207 85-126 (126)
61 cd02419 Peptidase_C39C A sub-f 35.1 96 0.0021 22.3 4.9 38 170-207 84-125 (127)
62 smart00460 TGc Transglutaminas 34.9 51 0.0011 20.9 3.0 20 167-187 46-65 (68)
63 PF13465 zf-H2C2_2: Zinc-finge 31.1 24 0.00051 18.5 0.7 13 92-104 11-23 (26)
64 KOG1887|consensus 29.4 19 0.00041 35.4 0.1 104 100-209 667-789 (806)
65 COG0093 RplN Ribosomal protein 25.4 73 0.0016 23.7 2.6 34 155-197 57-90 (122)
66 COG2888 Predicted Zn-ribbon RN 23.2 40 0.00087 21.9 0.7 12 93-104 48-59 (61)
67 PF13529 Peptidase_C39_2: Pept 22.4 85 0.0018 22.7 2.6 23 167-189 121-143 (144)
68 PF01841 Transglut_core: Trans 21.9 69 0.0015 22.5 1.9 21 167-187 92-112 (113)
69 KOG0402|consensus 21.3 24 0.00053 24.4 -0.5 18 89-106 30-47 (92)
70 PF14353 CpXC: CpXC protein 21.3 99 0.0021 22.9 2.8 12 95-106 38-49 (128)
71 cd05896 Ig1_IL1RAPL-1_like Fir 20.9 57 0.0012 23.7 1.3 14 167-180 80-93 (104)
72 PHA02131 hypothetical protein 20.4 1E+02 0.0022 19.7 2.1 27 167-197 20-46 (70)
No 1
>KOG1865|consensus
Probab=100.00 E-value=4.5e-51 Score=363.44 Aligned_cols=210 Identities=34% Similarity=0.561 Sum_probs=199.3
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC----------------Ccc---
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV----------------ISG--- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------~f~--- 61 (242)
||.++.+.+.+++.+|+|..|++.|+.++.+|..|.|+||||||++++|.|+..+... +||
T Consensus 157 ~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~L 236 (545)
T KOG1865|consen 157 FQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYL 236 (545)
T ss_pred HHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccch
Confidence 5788999998888899999999999999999999999999999999999999987532 277
Q ss_pred ------------c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEE
Q psy13202 62 ------------S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLK 125 (242)
Q Consensus 62 ------------S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~ 125 (242)
| +.++|+|+|....+|+++|+.|..+|.++|+|+|+|++|+++..|.|+.+|.++|+||+|+||
T Consensus 237 rS~vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LK 316 (545)
T KOG1865|consen 237 RSQIKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLK 316 (545)
T ss_pred hhceecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeee
Confidence 3 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe-ecccccceeEEeccccccCccccCCC------ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecccc
Q psy13202 126 RFN-YLCLKISCAVQVPLYLEFGKFMHCRR------NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQ 198 (242)
Q Consensus 126 Rf~-~~~~K~~~~v~fp~~Ldl~~~~~~~~------~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~ 198 (242)
||+ +...||++.|.||+.|||.+|+..+. .|+|||+|.|.+..+|||+||||..+|+||.+||+.|+.++.+.
T Consensus 317 RF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~ 396 (545)
T KOG1865|consen 317 RFSNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIES 396 (545)
T ss_pred hhccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccc
Confidence 999 67799999999999999999999654 99999999999999999999999999999999999999999999
Q ss_pred cc--ceEEEEEEEe
Q psy13202 199 VT--NAYVVIYELL 210 (242)
Q Consensus 199 v~--~aYiLfY~r~ 210 (242)
|+ .||||||.|.
T Consensus 397 VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 397 VLSQQAYILFYARK 410 (545)
T ss_pred eecccceEEEEEee
Confidence 98 9999999997
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-48 Score=339.25 Aligned_cols=207 Identities=32% Similarity=0.495 Sum_probs=185.8
Q ss_pred CHHHHHHHHhcC--CCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC---------------------
Q psy13202 1 MRKTLAACQAES--GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK--------------------- 57 (242)
Q Consensus 1 l~~ll~~~~~~~--~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~--------------------- 57 (242)
|+.+|..|+.+. .++++|..|+++++...+.|.+++||||||||..|||.|++++..
T Consensus 27 L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 106 (300)
T cd02663 27 LKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQP 106 (300)
T ss_pred HHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCC
Confidence 578899998764 357999999999999999999999999999999999999998642
Q ss_pred ----CCcc---------------c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEcc
Q psy13202 58 ----VISG---------------S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIE 114 (242)
Q Consensus 58 ----~~f~---------------S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~ 114 (242)
..|+ | +|++|+|+|++..+|+++|+.|+.+|.+.++++|.|++|+.++.++++..|.
T Consensus 107 ~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~ 186 (300)
T cd02663 107 TWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIK 186 (300)
T ss_pred CChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEec
Confidence 1254 2 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEEEEEEeec-----ccccceeEEeccccccCccccC---CC---ceeEEEEeecccCCCCcEEEEEecCCCCe
Q psy13202 115 KPPIVFILLLKRFNYL-----CLKISCAVQVPLYLEFGKFMHC---RR---NLVSAVIHHGSSSFSGHYNCIGSTSSGSY 183 (242)
Q Consensus 115 ~~P~vL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~---~~---~L~~vI~H~G~s~~~GHY~~~vr~~~~~W 183 (242)
++|++|+|||+||.+. ..|+.+.|.||..|++..+... +. +|+|||+|.|.++++|||+||+|. +++|
T Consensus 187 ~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W 265 (300)
T cd02663 187 KLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGW 265 (300)
T ss_pred cCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcE
Confidence 9999999999999833 4799999999999999876422 11 999999999977899999999999 8999
Q ss_pred EEEcCCcceeecccccc----------ceEEEEEE
Q psy13202 184 HYFGDDRVQASNLQQVT----------NAYVVIYE 208 (242)
Q Consensus 184 ~~~nD~~V~~~~~~~v~----------~aYiLfY~ 208 (242)
++|||+.|++++.++|. +||||||+
T Consensus 266 ~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 266 LLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99999999999988773 89999995
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-46 Score=327.50 Aligned_cols=203 Identities=26% Similarity=0.450 Sum_probs=181.9
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC-----------CCcc--------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK-----------VISG-------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~-----------~~f~-------- 61 (242)
|+.++..|+.++..+++|..|++.++ +..++||||+||+..||+.|++++.. ..|+
T Consensus 57 L~~lf~~l~~~~~~~i~p~~f~~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~ 131 (324)
T cd02668 57 LQLIFAQLQFGNRSVVDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQ 131 (324)
T ss_pred HHHHHHHHHhCCCceEChHHHHHHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEE
Confidence 57899999999999999999999985 77899999999999999999988653 1243
Q ss_pred -------c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec
Q psy13202 62 -------S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL 130 (242)
Q Consensus 62 -------S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~ 130 (242)
| +|+.|+|++++..+|+++|+.|+.+|.+++++.|.|++|+.++.+.++..|.++|++|+|||+||.+.
T Consensus 132 C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d 211 (324)
T cd02668 132 CSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFD 211 (324)
T ss_pred eCCCCCccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceee
Confidence 1 89999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred -----ccccceeEEeccccccCccccCCC------ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccc
Q psy13202 131 -----CLKISCAVQVPLYLEFGKFMHCRR------NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQ 198 (242)
Q Consensus 131 -----~~K~~~~v~fp~~Ldl~~~~~~~~------~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~ 198 (242)
..|+++.|.||+.|||.+++.... +|+|||+|.|.++++|||+|++|.. +|+||+|||+.|++++.+.
T Consensus 212 ~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~ 291 (324)
T cd02668 212 RKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKP 291 (324)
T ss_pred cccCcceeCCcEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHH
Confidence 479999999999999999865321 9999999999878999999999986 5899999999999997775
Q ss_pred cc-----------------------ceEEEEEE
Q psy13202 199 VT-----------------------NAYVVIYE 208 (242)
Q Consensus 199 v~-----------------------~aYiLfY~ 208 (242)
+. +||||||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 292 LKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred hhcccccccccccccccCCCccccCceEEEEeC
Confidence 51 89999996
No 4
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.4e-45 Score=318.79 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=175.2
Q ss_pred HHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCcc---------------c----cce
Q psy13202 5 LAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISG---------------S----NNL 65 (242)
Q Consensus 5 l~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~f~---------------S----~f~ 65 (242)
+..++......++|..|++++++.++.|..+.|||||||+..||+.|++.+ ...|+ | +|+
T Consensus 73 l~~~~~~~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~~i-~~~F~g~~~~~~~C~~C~~~s~~~E~f~ 151 (332)
T cd02671 73 NPEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQELV-EKDFQGQLVLRTRCLECETFTERREDFQ 151 (332)
T ss_pred HHHHHhhcccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHHHH-HhhhceEEEEEEEeCCCCCeeceecccE
Confidence 345566666677899999999999999999999999999999999999654 34454 2 999
Q ss_pred eeeeeCCCC-------------------CCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEE
Q psy13202 66 ELSLDIYQL-------------------SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKR 126 (242)
Q Consensus 66 ~l~l~i~~~-------------------~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~R 126 (242)
+|+|+++.. .+|++||+.|+.+|.+.++++|.|++|+.++.+.++..|.++|++|+|||+|
T Consensus 152 ~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkR 231 (332)
T cd02671 152 DISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKC 231 (332)
T ss_pred EEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeee
Confidence 999999864 5899999999999999999999999999999999999999999999999999
Q ss_pred Eee---------cccccceeEEeccccccCccccCCC----ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCccee
Q psy13202 127 FNY---------LCLKISCAVQVPLYLEFGKFMHCRR----NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQA 193 (242)
Q Consensus 127 f~~---------~~~K~~~~v~fp~~Ldl~~~~~~~~----~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~ 193 (242)
|.. ...|+++.|.||..|++.++...+. +|+|||+|.|.++++|||+||+| |++|||+.|++
T Consensus 232 F~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~ 306 (332)
T cd02671 232 FAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKV 306 (332)
T ss_pred eccccccccccCCceecCccccCccccccccccCCCCCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEE
Confidence 993 2479999999999999987765543 99999999997789999999999 99999999999
Q ss_pred ecccccc-----------ceEEEEEE
Q psy13202 194 SNLQQVT-----------NAYVVIYE 208 (242)
Q Consensus 194 ~~~~~v~-----------~aYiLfY~ 208 (242)
++.+++. +||||||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 307 TEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred ccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9876543 99999995
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-44 Score=315.45 Aligned_cols=206 Identities=30% Similarity=0.459 Sum_probs=183.2
Q ss_pred CHHHHHHHH-hcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC----------------Ccc--
Q psy13202 1 MRKTLAACQ-AESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV----------------ISG-- 61 (242)
Q Consensus 1 l~~ll~~~~-~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------~f~-- 61 (242)
|++++..++ .+...++.|..|+.++++..+.|.++.|||||||+..||+.|++++... .|+
T Consensus 51 l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~ 130 (328)
T cd02660 51 MDEIFQEFYYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGS 130 (328)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccE
Confidence 467888884 4455789999999999999999999999999999999999999986432 254
Q ss_pred -------------c----cceeeeeeCCCC---------------CCHHHHHHhhcccccccCCCccccCcCCCceeEEE
Q psy13202 62 -------------S----NNLELSLDIYQL---------------SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATK 109 (242)
Q Consensus 62 -------------S----~f~~l~l~i~~~---------------~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~ 109 (242)
+ +|+.|+|+++.. .+|+++|+.|+.+|.+.+.+ |.|++|+.++.+.+
T Consensus 131 ~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~ 209 (328)
T cd02660 131 LQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATK 209 (328)
T ss_pred EEeeeEcCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEE
Confidence 1 899999999875 89999999999999998766 99999999999999
Q ss_pred EEEccccCceeEEEEEEEeec----ccccceeEEeccccccCccccC-------------CC--ceeEEEEeecccCCCC
Q psy13202 110 QFSIEKPPIVFILLLKRFNYL----CLKISCAVQVPLYLEFGKFMHC-------------RR--NLVSAVIHHGSSSFSG 170 (242)
Q Consensus 110 ~~~i~~~P~vL~i~l~Rf~~~----~~K~~~~v~fp~~Ldl~~~~~~-------------~~--~L~~vI~H~G~s~~~G 170 (242)
+..|.++|++|+|||+||.+. ..|+...|.||..|||.+++.. +. +|+|||.|.|+ .++|
T Consensus 210 ~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~G 288 (328)
T cd02660 210 QLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTG 288 (328)
T ss_pred EEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCC
Confidence 999999999999999999943 3799999999999999998763 11 99999999995 8899
Q ss_pred cEEEEEecCCCCeEEEcCCcceeecccccc--ceEEEEEE
Q psy13202 171 HYNCIGSTSSGSYHYFGDDRVQASNLQQVT--NAYVVIYE 208 (242)
Q Consensus 171 HY~~~vr~~~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~ 208 (242)
||+|++|..+++||+|||+.|++++.+++. +||||||.
T Consensus 289 HY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 289 HYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred cEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 999999996699999999999999999997 99999994
No 6
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-44 Score=310.25 Aligned_cols=208 Identities=36% Similarity=0.606 Sum_probs=188.8
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC-------------------CCcc
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK-------------------VISG 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~-------------------~~f~ 61 (242)
|+.++.+++.++...+.|..|.+++....+.|..+.||||+||+.+||+.|++++.. ..|+
T Consensus 50 l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~ 129 (304)
T cd02661 50 LEAHVERALASSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFG 129 (304)
T ss_pred HHHHHHHHHhCCCCccChHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCC
Confidence 456778888888889999999999999999999999999999999999999977421 1243
Q ss_pred ---------------c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEE
Q psy13202 62 ---------------S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFIL 122 (242)
Q Consensus 62 ---------------S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i 122 (242)
| .|+.|+|++++..+++++|+.++.+|.+++.+.|.|++|++++.+.++..|.++|++|+|
T Consensus 130 g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i 209 (304)
T cd02661 130 GYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTI 209 (304)
T ss_pred cEEeeeEEeCCCCCCcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEE
Confidence 1 889999999998999999999999999999899999999999999999999999999999
Q ss_pred EEEEEeec-ccccceeEEeccccccCccccCCC------ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeec
Q psy13202 123 LLKRFNYL-CLKISCAVQVPLYLEFGKFMHCRR------NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASN 195 (242)
Q Consensus 123 ~l~Rf~~~-~~K~~~~v~fp~~Ldl~~~~~~~~------~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~ 195 (242)
||+||.+. ..|+.+.|.||+.||+.++...+. +|+|||+|.|.++++|||+||+|.++|+|++|||+.|++++
T Consensus 210 ~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~ 289 (304)
T cd02661 210 HLKRFSNFRGGKINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVS 289 (304)
T ss_pred EEeccccCCccccCCeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECC
Confidence 99999976 789999999999999998877521 99999999998679999999999888999999999999999
Q ss_pred ccccc--ceEEEEEE
Q psy13202 196 LQQVT--NAYVVIYE 208 (242)
Q Consensus 196 ~~~v~--~aYiLfY~ 208 (242)
.+++. +||||||.
T Consensus 290 ~~~v~~~~aYil~Y~ 304 (304)
T cd02661 290 IETVLSQKAYILFYI 304 (304)
T ss_pred HHHhcCCCcEEEEeC
Confidence 99998 99999993
No 7
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-44 Score=316.14 Aligned_cols=202 Identities=29% Similarity=0.441 Sum_probs=173.3
Q ss_pred CHHHHHHHHhcCCCccChHH-HHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCcc---------------c--
Q psy13202 1 MRKTLAACQAESGSAIIPEL-IINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISG---------------S-- 62 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~-~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~f~---------------S-- 62 (242)
|+.++..+..+...++.|.. |+..+. .+.|..+.|||||||+..||+.|+.. ....|+ |
T Consensus 46 L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~~-i~~~F~G~~~~~i~C~~C~~~s~~ 122 (327)
T cd02664 46 LQLLQAHLMHTQRRAEAPPDYFLEASR--PPWFTPGSQQDCSEYLRYLLDRLHTL-IEKMFGGKLSTTIRCLNCNSTSAR 122 (327)
T ss_pred HHHHHHHHhhcCCcccCCHHHHHHHhc--ccccCCCCcCCHHHHHHHHHHHHHHH-HHhhCcEEeEeEEEcCCCCCEecc
Confidence 45666677766677888877 776654 46799999999999999999999843 334444 1
Q ss_pred --cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec-----ccccc
Q psy13202 63 --NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL-----CLKIS 135 (242)
Q Consensus 63 --~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~-----~~K~~ 135 (242)
.|..|+|++| +|+++|+.|+.+|.++++++|+|++|++++.+.++..|.++|++|+|||+||.+. ..|+.
T Consensus 123 ~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 199 (327)
T cd02664 123 TERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIM 199 (327)
T ss_pred cccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecC
Confidence 8899999988 8999999999999999999999999999999999999999999999999999833 37999
Q ss_pred eeEEeccccccCcccc------------------C----CC---ceeEEEEeecccCCCCcEEEEEecCC----------
Q psy13202 136 CAVQVPLYLEFGKFMH------------------C----RR---NLVSAVIHHGSSSFSGHYNCIGSTSS---------- 180 (242)
Q Consensus 136 ~~v~fp~~Ldl~~~~~------------------~----~~---~L~~vI~H~G~s~~~GHY~~~vr~~~---------- 180 (242)
+.|.||+.|||..+.. . +. +|+|||+|.|.++++|||+||+|...
T Consensus 200 ~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~ 279 (327)
T cd02664 200 DNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECP 279 (327)
T ss_pred ceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCcccccccccc
Confidence 9999999999988752 0 11 99999999998789999999999854
Q ss_pred -----------CCeEEEcCCcceeecccccc---------ceEEEEEE
Q psy13202 181 -----------GSYHYFGDDRVQASNLQQVT---------NAYVVIYE 208 (242)
Q Consensus 181 -----------~~W~~~nD~~V~~~~~~~v~---------~aYiLfY~ 208 (242)
+.||+|||+.|++++.++|. +||||||+
T Consensus 280 ~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 280 EPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred ccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 78999999999999998874 99999995
No 8
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-44 Score=305.70 Aligned_cols=187 Identities=35% Similarity=0.539 Sum_probs=167.7
Q ss_pred ChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCcc---------------c----cceeeeeeCCC----
Q psy13202 17 IPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISG---------------S----NNLELSLDIYQ---- 73 (242)
Q Consensus 17 ~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~f~---------------S----~f~~l~l~i~~---- 73 (242)
+|..|+..+.+..+.|..++||||+||+..||+.|+..+ ...|+ | +|+.|+|+++.
T Consensus 31 ~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~~i-~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~ 109 (279)
T cd02667 31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRTFI-DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKS 109 (279)
T ss_pred CHHHHHHHHHHhhHhhcCCchhhHHHHHHHHHHHHHHhh-hhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCC
Confidence 899999999999999999999999999999999999543 33443 1 89999998763
Q ss_pred CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec----ccccceeEEeccccccCcc
Q psy13202 74 LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL----CLKISCAVQVPLYLEFGKF 149 (242)
Q Consensus 74 ~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~----~~K~~~~v~fp~~Ldl~~~ 149 (242)
..+|++||+.|+.+|.++++++|.|++|++ +.++..|.++|++|+|||+||.+. ..|+++.|.||+.|||.+|
T Consensus 110 ~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~ 186 (279)
T cd02667 110 ECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPF 186 (279)
T ss_pred CCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhc
Confidence 569999999999999999999999999987 889999999999999999999943 4899999999999999998
Q ss_pred ccC--------CC---ceeEEEEeecccCCCCcEEEEEecC----------------------CCCeEEEcCCcceeecc
Q psy13202 150 MHC--------RR---NLVSAVIHHGSSSFSGHYNCIGSTS----------------------SGSYHYFGDDRVQASNL 196 (242)
Q Consensus 150 ~~~--------~~---~L~~vI~H~G~s~~~GHY~~~vr~~----------------------~~~W~~~nD~~V~~~~~ 196 (242)
+.. .. +|+|||+|.|. .++|||+||+|.. +++||+|||+.|++++.
T Consensus 187 ~~~~~~~~~~~~~~~Y~L~~vi~H~G~-~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~ 265 (279)
T cd02667 187 CDPKCNSSEDKSSVLYRLYGVVEHSGT-MRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSL 265 (279)
T ss_pred cCccccccccCCCceEEEEEEEEEeCC-CCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCH
Confidence 865 11 99999999997 5999999999974 57999999999999999
Q ss_pred cccc--ceEEEEEE
Q psy13202 197 QQVT--NAYVVIYE 208 (242)
Q Consensus 197 ~~v~--~aYiLfY~ 208 (242)
+++. +||||||+
T Consensus 266 ~~v~~~~aYiLfYe 279 (279)
T cd02667 266 EEVLKSEAYLLFYE 279 (279)
T ss_pred HHhccCCcEEEEeC
Confidence 9998 99999996
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-43 Score=305.21 Aligned_cols=202 Identities=21% Similarity=0.320 Sum_probs=176.2
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCC------CCCCCcHHHHHHHHHHHHHHhhcC---------CCcc----
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFE------YYRPEDSHEFLLYLIEGIHRSYLK---------VISG---- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~------~~~QqDa~Efl~~ll~~l~~~~~~---------~~f~---- 61 (242)
|++|+..|+.+. .+++|..|+..+++..+.|. .++||||+||+..||+.|++++.. ..|+
T Consensus 49 l~~L~~~l~~~~-~~i~p~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~ 127 (305)
T cd02657 49 LRDLFDTMDKKQ-EPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELE 127 (305)
T ss_pred HHHHHHHHHhCC-CcCCcHHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEE
Confidence 578888888765 48999999999999988884 459999999999999999998752 1243
Q ss_pred ------------c----cceeeeeeCCCC---CCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEE
Q psy13202 62 ------------S----NNLELSLDIYQL---SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFIL 122 (242)
Q Consensus 62 ------------S----~f~~l~l~i~~~---~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i 122 (242)
+ +|+.|+++|+.. .+|+++|+.+++++.. ..|+.|+....+.++..|.++|++|+|
T Consensus 128 ~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii 202 (305)
T cd02657 128 TKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTV 202 (305)
T ss_pred EEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEE
Confidence 1 799999999975 6899999999976643 379999999999999999999999999
Q ss_pred EEEEEee-----cccccceeEEeccccccCccccCCC--ceeEEEEeecccCCCCcEEEEEecCC-CCeEEEcCCcceee
Q psy13202 123 LLKRFNY-----LCLKISCAVQVPLYLEFGKFMHCRR--NLVSAVIHHGSSSFSGHYNCIGSTSS-GSYHYFGDDRVQAS 194 (242)
Q Consensus 123 ~l~Rf~~-----~~~K~~~~v~fp~~Ldl~~~~~~~~--~L~~vI~H~G~s~~~GHY~~~vr~~~-~~W~~~nD~~V~~~ 194 (242)
||+||.+ ...|+.+.|.||+.||+.+++..+. +|+|||+|.|.++++|||+||+|..+ ++||+|||+.|+++
T Consensus 203 ~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~ 282 (305)
T cd02657 203 QFVRFFWKRDIQKKAKILRKVKFPFELDLYELCTPSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEV 282 (305)
T ss_pred EEECCccccccCceeecCcEEECCceEecccccCCCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEe
Confidence 9999983 2468999999999999999886444 99999999998789999999999964 89999999999999
Q ss_pred cccccc---------ceEEEEEE
Q psy13202 195 NLQQVT---------NAYVVIYE 208 (242)
Q Consensus 195 ~~~~v~---------~aYiLfY~ 208 (242)
+.++|. .||||||+
T Consensus 283 ~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 283 TEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CHHHHHhhcCCCCCceEEEEEEC
Confidence 998885 89999996
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-42 Score=302.17 Aligned_cols=199 Identities=28% Similarity=0.398 Sum_probs=171.7
Q ss_pred CHHHHHHHHhcC--------------CCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC-------CC
Q psy13202 1 MRKTLAACQAES--------------GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK-------VI 59 (242)
Q Consensus 1 l~~ll~~~~~~~--------------~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~-------~~ 59 (242)
|++++..++.+. ..+++|..|+..++...+.|..+.|||||||+..||+.|++++.. ..
T Consensus 50 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~ 129 (311)
T cd02658 50 LIKLADGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLGLNPNDL 129 (311)
T ss_pred HHHHHHHhcCCCcCCCccccccccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccccCCchhh
Confidence 456777777543 347999999999999999999999999999999999999998742 22
Q ss_pred cc---------------c----cceeeeeeCCCC--------------CCHHHHHHhhcccccccCCCccccCcCCCcee
Q psy13202 60 SG---------------S----NNLELSLDIYQL--------------SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTE 106 (242)
Q Consensus 60 f~---------------S----~f~~l~l~i~~~--------------~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~ 106 (242)
|+ | .|+.++|+++.. .+|+++|+.|+.+|.++ +.|++|+.++.
T Consensus 130 f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~ 205 (311)
T cd02658 130 FKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTT 205 (311)
T ss_pred eEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCccc
Confidence 43 1 788899988753 39999999999999887 58999999999
Q ss_pred EEEEEEccccCceeEEEEEEEee----cccccceeEEeccccccCccccCCCceeEEEEeecccCCCCcEEEEEecC---
Q psy13202 107 ATKQFSIEKPPIVFILLLKRFNY----LCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTS--- 179 (242)
Q Consensus 107 ~~~~~~i~~~P~vL~i~l~Rf~~----~~~K~~~~v~fp~~Ldl~~~~~~~~~L~~vI~H~G~s~~~GHY~~~vr~~--- 179 (242)
+.++.+|.++|++|+|||+||.+ ...|+...|.||..|.-..| +|+|||+|.|.+.++|||++|+|..
T Consensus 206 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l~~~~Y-----~L~~vI~H~G~~~~~GHY~~~vk~~~~~ 280 (311)
T cd02658 206 ATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGKY-----ELIAFISHKGTSVHSGHYVAHIKKEIDG 280 (311)
T ss_pred EEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcCCCCcE-----EEEEEEEccCCCCCCcceEEEEeCCCCC
Confidence 99999999999999999999985 34689999999988733222 9999999999879999999999985
Q ss_pred CCCeEEEcCCcceeecccccc--ceEEEEEE
Q psy13202 180 SGSYHYFGDDRVQASNLQQVT--NAYVVIYE 208 (242)
Q Consensus 180 ~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~ 208 (242)
+++||+|||+.|++++..++. +||||||+
T Consensus 281 ~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 281 EGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred CCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 289999999999999998886 99999996
No 11
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-41 Score=299.18 Aligned_cols=211 Identities=27% Similarity=0.432 Sum_probs=179.5
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC--------CCcc-----------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK--------VISG----------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~--------~~f~----------- 61 (242)
|+.++..|+.++...+.|..+..........|..++||||+||+..|++.|++++.. ..|+
T Consensus 50 l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~ 129 (334)
T cd02659 50 LQRLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKE 129 (334)
T ss_pred HHHHHHHHHhCCccccCcchhheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecC
Confidence 567888888777666777665422222234678899999999999999999988753 2244
Q ss_pred ----c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee----
Q psy13202 62 ----S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY---- 129 (242)
Q Consensus 62 ----S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~---- 129 (242)
| +|+.|+|++++..+++++|+.++.+|.+++.+.|.|++|++++.+.++..|.++|++|+|||+||.+
T Consensus 130 C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~ 209 (334)
T cd02659 130 CPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFET 209 (334)
T ss_pred CCceecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEcccc
Confidence 1 9999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred -cccccceeEEeccccccCccccCC-------------C----ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCc
Q psy13202 130 -LCLKISCAVQVPLYLEFGKFMHCR-------------R----NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDR 190 (242)
Q Consensus 130 -~~~K~~~~v~fp~~Ldl~~~~~~~-------------~----~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~ 190 (242)
...|++..|.||..||+.+++... . +|+|||+|.|+ .++|||+|++|.. +++|++|||+.
T Consensus 210 ~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~ 288 (334)
T cd02659 210 MMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDV 288 (334)
T ss_pred CcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcc
Confidence 347999999999999998876431 1 99999999995 8999999999985 68999999999
Q ss_pred ceeecccccc------------------------ceEEEEEEEeCC
Q psy13202 191 VQASNLQQVT------------------------NAYVVIYELLPS 212 (242)
Q Consensus 191 V~~~~~~~v~------------------------~aYiLfY~r~~~ 212 (242)
|++++.+++. .||||||+|+++
T Consensus 289 V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 289 VTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred cEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeCC
Confidence 9999998883 599999999763
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-40 Score=299.52 Aligned_cols=205 Identities=20% Similarity=0.316 Sum_probs=167.1
Q ss_pred CHHHHHHHHhcC--CCccChHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHHHHHHhhcCC----------Ccc------
Q psy13202 1 MRKTLAACQAES--GSAIIPELIINKLKLIA-HHFEYYRPEDSHEFLLYLIEGIHRSYLKV----------ISG------ 61 (242)
Q Consensus 1 l~~ll~~~~~~~--~~~i~p~~~~~~l~~~~-~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------~f~------ 61 (242)
|+.+++++|+.. ..+++|..|+++++... +.|.++.||||||||.+|||.|++++... .|+
T Consensus 168 l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~ 247 (440)
T cd02669 168 LSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIE 247 (440)
T ss_pred HHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEE
Confidence 467889999765 47899999999998765 57889999999999999999999987631 132
Q ss_pred ------------------------c----cceeeeeeCCCCCCHH-----HHHHhhcccccccCCCccccCcCCCceeEE
Q psy13202 62 ------------------------S----NNLELSLDIYQLSSLD-----EALGQFFAKEYLVRDNLYQCEKCGYKTEAT 108 (242)
Q Consensus 62 ------------------------S----~f~~l~l~i~~~~sl~-----~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~ 108 (242)
| +|++|+|+||...... .++..+.-.|.++ +|.|+.|.....+.
T Consensus 248 ~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~ 324 (440)
T cd02669 248 TQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSL 324 (440)
T ss_pred EEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccce
Confidence 1 7999999998742221 1222222223333 37888898888899
Q ss_pred EEEEccccCceeEEEEEEEee---cccccceeEEeccc-cccCccccCC-------C--ceeEEEEeecccCCCCcEEEE
Q psy13202 109 KQFSIEKPPIVFILLLKRFNY---LCLKISCAVQVPLY-LEFGKFMHCR-------R--NLVSAVIHHGSSSFSGHYNCI 175 (242)
Q Consensus 109 ~~~~i~~~P~vL~i~l~Rf~~---~~~K~~~~v~fp~~-Ldl~~~~~~~-------~--~L~~vI~H~G~s~~~GHY~~~ 175 (242)
|+.+|.++|++|+||||||.+ ...|+.+.|+||.. |||.+|+..+ . +|+|||+|.|..+++|||++|
T Consensus 325 k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~ 404 (440)
T cd02669 325 KRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQ 404 (440)
T ss_pred EEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEE
Confidence 999999999999999999994 34799999999986 8999997421 1 999999999974499999999
Q ss_pred EecC-CCCeEEEcCCcceeecccccc--ceEEEEEE
Q psy13202 176 GSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYE 208 (242)
Q Consensus 176 vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~ 208 (242)
+|+. +|+||+|||+.|++++.+.+. +||||||+
T Consensus 405 v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 405 LRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 9974 789999999999999999998 99999996
No 13
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-39 Score=266.94 Aligned_cols=200 Identities=26% Similarity=0.409 Sum_probs=165.6
Q ss_pred HhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC-----------------------------
Q psy13202 9 QAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI----------------------------- 59 (242)
Q Consensus 9 ~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~----------------------------- 59 (242)
.......|+|.+|++.++.+++.|.+..|||+|||+.++||.||+++++..
T Consensus 134 ~~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EW 213 (415)
T COG5533 134 GCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEW 213 (415)
T ss_pred ccCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhh
Confidence 344557899999999999999999999999999999999999999986543
Q ss_pred ---------------cc--------------c----cceeeeeeCCC--CCCHHHHHHhhcccccccCCCccccCcCCCc
Q psy13202 60 ---------------SG--------------S----NNLELSLDIYQ--LSSLDEALGQFFAKEYLVRDNLYQCEKCGYK 104 (242)
Q Consensus 60 ---------------f~--------------S----~f~~l~l~i~~--~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~ 104 (242)
|| | .|..|.+|++. ...|+||++.|.++|.+.+.++|.|++|+++
T Consensus 214 n~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k 293 (415)
T COG5533 214 NLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRK 293 (415)
T ss_pred HHhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhccc
Confidence 22 3 88899999886 4569999999999999999999999999999
Q ss_pred eeEEEEEEccccCceeEEEEEEEe---eccccccee--------EEeccccccCccc-cCCC--ceeEEEEeecccCCCC
Q psy13202 105 TEATKQFSIEKPPIVFILLLKRFN---YLCLKISCA--------VQVPLYLEFGKFM-HCRR--NLVSAVIHHGSSSFSG 170 (242)
Q Consensus 105 ~~~~~~~~i~~~P~vL~i~l~Rf~---~~~~K~~~~--------v~fp~~Ldl~~~~-~~~~--~L~~vI~H~G~s~~~G 170 (242)
+.++|++.|.++|++|||||+||. ...+|+++. ++....+++..-. ..|. +|+|||||.|. .++|
T Consensus 294 ~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gG 372 (415)
T COG5533 294 ESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGG 372 (415)
T ss_pred ccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce-ecCc
Confidence 999999999999999999999998 233444432 2221222222211 1122 99999999995 9999
Q ss_pred cEEEEEecCCCCeEEEcCCcceeecccccc---ceEEEEEEEe
Q psy13202 171 HYNCIGSTSSGSYHYFGDDRVQASNLQQVT---NAYVVIYELL 210 (242)
Q Consensus 171 HY~~~vr~~~~~W~~~nD~~V~~~~~~~v~---~aYiLfY~r~ 210 (242)
||+++|+. +|.|+-+||+.|++++...-. ++|||||+|.
T Consensus 373 HY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 373 HYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 99999998 788999999999999887766 8899999995
No 14
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-39 Score=270.58 Aligned_cols=184 Identities=21% Similarity=0.315 Sum_probs=147.6
Q ss_pred hHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC------------------Ccc---------------c--
Q psy13202 18 PELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV------------------ISG---------------S-- 62 (242)
Q Consensus 18 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------~f~---------------S-- 62 (242)
...-+..+++..+.|.+++||||||||.+|||.|++++... .|+ |
T Consensus 14 ~~~~~~~i~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~ 93 (245)
T cd02673 14 TMQALSSIGKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENV 93 (245)
T ss_pred HHHHHHHHhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeee
Confidence 44556778888999999999999999999999999854211 143 2
Q ss_pred --cceeeeeeCCC--CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeecccccceeE
Q psy13202 63 --NNLELSLDIYQ--LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAV 138 (242)
Q Consensus 63 --~f~~l~l~i~~--~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~~~K~~~~v 138 (242)
+|++|+|+++. ..++++++..+...+.++ +.|++|+.. .+.++.+|.++|++|+|||+||.+.. +....+
T Consensus 94 ~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~-~~~~~~ 167 (245)
T cd02673 94 SDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI-ATSDYL 167 (245)
T ss_pred ccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc-cccccc
Confidence 89999999987 367788888888777665 899999976 78888899999999999999998543 222222
Q ss_pred EeccccccCccccCCC--ceeEEEEeecccCCCCcEEEEEecC--CCCeEEEcCCcceeecccccc-----ceEEEEEE
Q psy13202 139 QVPLYLEFGKFMHCRR--NLVSAVIHHGSSSFSGHYNCIGSTS--SGSYHYFGDDRVQASNLQQVT-----NAYVVIYE 208 (242)
Q Consensus 139 ~fp~~Ldl~~~~~~~~--~L~~vI~H~G~s~~~GHY~~~vr~~--~~~W~~~nD~~V~~~~~~~v~-----~aYiLfY~ 208 (242)
.. ..+++.++...+. +|+|||+|.|.+.++|||+||+|.. +|+||+|||+.|++++.++|. +||||||+
T Consensus 168 ~~-~~~~~~~~~~~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 168 KK-NEEIMKKYCGTDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred cc-cccccccccCCCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 22 2345666554322 9999999999878999999999985 578999999999999999886 99999995
No 15
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-38 Score=265.42 Aligned_cols=185 Identities=31% Similarity=0.504 Sum_probs=160.3
Q ss_pred CccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCcc-------------------ccceeeeeeCCCC
Q psy13202 14 SAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISG-------------------SNNLELSLDIYQL 74 (242)
Q Consensus 14 ~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~f~-------------------S~f~~l~l~i~~~ 74 (242)
..+-....++.|.. .||||+||+.+||+.|+.. ....|+ ++|+.|+|++|..
T Consensus 7 ~~cy~n~~~Q~l~~--------~QqDa~Ef~~~ll~~l~~~-i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~ 77 (230)
T cd02674 7 NTCYMNSILQCLSA--------DQQDAQEFLLFLLDGLHSI-IVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSG 77 (230)
T ss_pred cchhhhHHHHHHHH--------hhhhHHHHHHHHHHHHhhh-HHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccc
Confidence 34556677777775 9999999999999999943 333444 1899999999864
Q ss_pred C------CHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec---ccccceeEEec-ccc
Q psy13202 75 S------SLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL---CLKISCAVQVP-LYL 144 (242)
Q Consensus 75 ~------sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~---~~K~~~~v~fp-~~L 144 (242)
. +|+++|+.++.++.+++.+++.|++|+.++.+.++..|.++|++|+|+|+||... ..|+.+.|.|| +.|
T Consensus 78 ~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l 157 (230)
T cd02674 78 SGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDL 157 (230)
T ss_pred cCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccc
Confidence 4 9999999999999999999999999999999999999999999999999999954 78999999999 568
Q ss_pred ccCccccC----CC---ceeEEEEeecccCCCCcEEEEEecCC-CCeEEEcCCcceeecccccc--ceEEEEEE
Q psy13202 145 EFGKFMHC----RR---NLVSAVIHHGSSSFSGHYNCIGSTSS-GSYHYFGDDRVQASNLQQVT--NAYVVIYE 208 (242)
Q Consensus 145 dl~~~~~~----~~---~L~~vI~H~G~s~~~GHY~~~vr~~~-~~W~~~nD~~V~~~~~~~v~--~aYiLfY~ 208 (242)
++.++... +. +|+|||+|.|. .++|||+|++|..+ ++|++|||+.|++++.+++. .||||||+
T Consensus 158 ~l~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 158 DLTPYVDTRSFTGPFKYDLYAVVNHYGS-LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccccCcccCCCCceEEEEEEEEeeCC-CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 98876311 11 99999999997 59999999999864 89999999999999999986 99999996
No 16
>KOG1866|consensus
Probab=100.00 E-value=8.3e-40 Score=297.08 Aligned_cols=213 Identities=26% Similarity=0.427 Sum_probs=191.2
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------c-c----------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------S-G---------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f-~---------- 61 (242)
||.+|..+..+.-.++-|+.|.+.++-.+......+||||-||+..|+|.+.+.+++.. | |
T Consensus 146 lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~~ 225 (944)
T KOG1866|consen 146 LQVIFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQG 225 (944)
T ss_pred HHHHHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhcc
Confidence 47778888888889999999999999888888889999999999999999999976532 2 2
Q ss_pred -----c---cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe-----
Q psy13202 62 -----S---NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN----- 128 (242)
Q Consensus 62 -----S---~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~----- 128 (242)
| +|+.|+|.|. ..+|+++|++|.+.+.++|.|.|+|++|.++....++..|.+||++|+|||+||.
T Consensus 226 CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~ 304 (944)
T KOG1866|consen 226 CPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWER 304 (944)
T ss_pred CCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhh
Confidence 2 9999999999 7899999999999999999999999999999999999999999999999999998
Q ss_pred ecccccceeEEeccccccCccccCC---------------------C--ceeEEEEeecccCCCCcEEEEEecC----CC
Q psy13202 129 YLCLKISCAVQVPLYLEFGKFMHCR---------------------R--NLVSAVIHHGSSSFSGHYNCIGSTS----SG 181 (242)
Q Consensus 129 ~~~~K~~~~v~fp~~Ldl~~~~~~~---------------------~--~L~~vI~H~G~s~~~GHY~~~vr~~----~~ 181 (242)
....|.+..+.||..|||.+|+... . +|+||++|.|. +.+|||++|++.. ++
T Consensus 305 ~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~ 383 (944)
T KOG1866|consen 305 ECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGN 383 (944)
T ss_pred ccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCC
Confidence 3348999999999999999998651 1 99999999996 9999999999975 56
Q ss_pred CeEEEcCCcceeecccccc----------------------ceEEEEEEEeCCCcc
Q psy13202 182 SYHYFGDDRVQASNLQQVT----------------------NAYVVIYELLPSSLH 215 (242)
Q Consensus 182 ~W~~~nD~~V~~~~~~~v~----------------------~aYiLfY~r~~~~~~ 215 (242)
+||+|||-.|++.+..++. +||||||+|++....
T Consensus 384 kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 384 KWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred ceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCc
Confidence 9999999999999988755 999999999877653
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.7e-37 Score=260.00 Aligned_cols=155 Identities=30% Similarity=0.502 Sum_probs=135.6
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCcc---------------c-----cceeeeeeCCCC-----CCHHHHHHhhcccccc
Q psy13202 36 RPEDSHEFLLYLIEGIHRSYLKVISG---------------S-----NNLELSLDIYQL-----SSLDEALGQFFAKEYL 90 (242)
Q Consensus 36 ~QqDa~Efl~~ll~~l~~~~~~~~f~---------------S-----~f~~l~l~i~~~-----~sl~~~l~~~~~~e~i 90 (242)
+|||||||+..||+.|+..+. ..|+ | +|+.|+|++|.. .+|+++|+.|+.+|.+
T Consensus 33 ~QqDa~EFl~~ll~~l~~~i~-~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l 111 (240)
T cd02662 33 EQQDAHELFQVLLETLEQLLK-FPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEII 111 (240)
T ss_pred hhcCHHHHHHHHHHHHHHhcc-CccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccc
Confidence 999999999999999995543 3343 1 899999999975 5999999999999999
Q ss_pred cCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee----cccccceeEEeccccccCccccCCCceeEEEEeeccc
Q psy13202 91 VRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY----LCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSS 166 (242)
Q Consensus 91 ~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~----~~~K~~~~v~fp~~Ldl~~~~~~~~~L~~vI~H~G~s 166 (242)
++ |.|++| +..|.++|++|+|||+||.+ ...|+++.|.||+.| ..... +|+|||+|.|+
T Consensus 112 ~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l--~~~~Y---~L~avi~H~G~- 174 (240)
T cd02662 112 DD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL--PKVLY---RLRAVVVHYGS- 174 (240)
T ss_pred cC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--CCceE---EEEEEEEEecc-
Confidence 86 899999 57799999999999999994 347999999999998 22222 99999999997
Q ss_pred CCCCcEEEEEecC---------------------CCCeEEEcCCcceeeccccc-c--ceEEEEEE
Q psy13202 167 SFSGHYNCIGSTS---------------------SGSYHYFGDDRVQASNLQQV-T--NAYVVIYE 208 (242)
Q Consensus 167 ~~~GHY~~~vr~~---------------------~~~W~~~nD~~V~~~~~~~v-~--~aYiLfY~ 208 (242)
.++|||+||+|.+ .+.||+|||+.|++++.+++ . +||||||+
T Consensus 175 ~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 175 HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred CCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 6999999999985 38999999999999999998 4 99999995
No 18
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-38 Score=282.90 Aligned_cols=135 Identities=26% Similarity=0.418 Sum_probs=124.0
Q ss_pred CHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe---ecccccceeEEec-cccccCcccc
Q psy13202 76 SLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN---YLCLKISCAVQVP-LYLEFGKFMH 151 (242)
Q Consensus 76 sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~---~~~~K~~~~v~fp-~~Ldl~~~~~ 151 (242)
||++||+.|.++|.+.-.+.|+|+.|+....++|++.|+++|++|+||||||+ ....|+.+.|+|| ..|||+.+..
T Consensus 676 TL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~ 755 (823)
T COG5560 676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEY 755 (823)
T ss_pred cHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEE
Confidence 99999999999999988889999999999999999999999999999999999 3458999999999 7799988765
Q ss_pred C---CC---ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeC
Q psy13202 152 C---RR---NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLP 211 (242)
Q Consensus 152 ~---~~---~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~ 211 (242)
. |. +|+||=.|.| +..+|||+||+|+. ++.||+|||++|+++..++.. .||+|||+|+.
T Consensus 756 ~~~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 756 MVDDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred eecCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence 4 33 9999999999 69999999999987 669999999999999998855 99999999974
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-37 Score=253.75 Aligned_cols=161 Identities=18% Similarity=0.270 Sum_probs=136.7
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCC----------------Ccc-------------c----cceeeeeeCCCCCCHHHHHH
Q psy13202 36 RPEDSHEFLLYLIEGIHRSYLKV----------------ISG-------------S----NNLELSLDIYQLSSLDEALG 82 (242)
Q Consensus 36 ~QqDa~Efl~~ll~~l~~~~~~~----------------~f~-------------S----~f~~l~l~i~~~~sl~~~l~ 82 (242)
.||||+||+..|++.|++.+... .|+ | +|++|+|+|.+..+|++||+
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~~~~~s~~~E~F~~L~l~i~~~~~L~e~L~ 100 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVLEGKPFCNCETFGQYPLQVNGYGNLHECLE 100 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEECCCcccccCccEEEEEEECCCCCHHHHHH
Confidence 89999999999999999987522 243 2 99999999999999999999
Q ss_pred hhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee---cccccceeEEeccccccCccccCCCceeEE
Q psy13202 83 QFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY---LCLKISCAVQVPLYLEFGKFMHCRRNLVSA 159 (242)
Q Consensus 83 ~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~---~~~K~~~~v~fp~~Ldl~~~~~~~~~L~~v 159 (242)
.++.++.+++.+ |. ....+.++..|.++|++|+|||+||.+ ...|+.+.|+||..|.-..| +|+||
T Consensus 101 ~~~~ee~l~~~~---~~---~~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l~~~~Y-----~L~aV 169 (228)
T cd02665 101 AAMFEGEVELLP---SD---HSVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQIIQQVPY-----ELHAV 169 (228)
T ss_pred Hhhhhccccccc---cc---chhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCccCCcee-----EEEEE
Confidence 999998887632 22 233456667899999999999999994 35899999999998833222 99999
Q ss_pred EEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc----------ceEEEEEE
Q psy13202 160 VIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT----------NAYVVIYE 208 (242)
Q Consensus 160 I~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~----------~aYiLfY~ 208 (242)
|+|.|. +++|||++|+|.. +++||+|||+.|++++.+++. +||||||.
T Consensus 170 i~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 170 LVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred EEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 999996 8999999999864 789999999999999998875 79999994
No 20
>KOG0944|consensus
Probab=100.00 E-value=1.7e-34 Score=260.77 Aligned_cols=205 Identities=23% Similarity=0.393 Sum_probs=176.5
Q ss_pred CHHHHHHHHhcCC----------CccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC------cc---
Q psy13202 1 MRKTLAACQAESG----------SAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI------SG--- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~----------~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~------f~--- 61 (242)
|.+|+..|.+++. .-|+|..|+..+++..|.|..++||||+|||.+||+.|.+...... |.
T Consensus 358 ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~~nptd~frF~v 437 (763)
T KOG0944|consen 358 LAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSLPNPTDLFRFEV 437 (763)
T ss_pred HHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccCCCHHHHHHhhh
Confidence 4578888887764 3589999999999999999999999999999999999998765542 22
Q ss_pred --------------c--cceeeeeeCCC------CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCce
Q psy13202 62 --------------S--NNLELSLDIYQ------LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIV 119 (242)
Q Consensus 62 --------------S--~f~~l~l~i~~------~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~v 119 (242)
| .-+.|.|+++. ...+..||+.|+.+ .+.+ |+|..|+.+..++++..+.++|++
T Consensus 438 e~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~kt~~~ksfP~y 513 (763)
T KOG0944|consen 438 EDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGATKTTRFKSFPDY 513 (763)
T ss_pred hhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCccccccccccccCCce
Confidence 2 67778888874 34999999999999 4443 999999999999999999999999
Q ss_pred eEEEEEEEe---ecccccceeEEeccccccCccccC--------------------------------------------
Q psy13202 120 FILLLKRFN---YLCLKISCAVQVPLYLEFGKFMHC-------------------------------------------- 152 (242)
Q Consensus 120 L~i~l~Rf~---~~~~K~~~~v~fp~~Ldl~~~~~~-------------------------------------------- 152 (242)
|+||+.||. +..+|+...|++|+.||++.+...
T Consensus 514 Liiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly 593 (763)
T KOG0944|consen 514 LIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALY 593 (763)
T ss_pred EEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999999 566999999999999999887644
Q ss_pred --------------------------------------------------------------------------------
Q psy13202 153 -------------------------------------------------------------------------------- 152 (242)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (242)
T Consensus 594 ~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h 673 (763)
T KOG0944|consen 594 YTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSH 673 (763)
T ss_pred hhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhc
Confidence
Q ss_pred ----------------------C--------C--ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecccccc
Q psy13202 153 ----------------------R--------R--NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVT 200 (242)
Q Consensus 153 ----------------------~--------~--~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v~ 200 (242)
| . .|+|+|.|.|+++.+|||+|++|. .|+|+.|||++|. .+.+...
T Consensus 674 ~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK-egkWVlfNDeKv~-~S~~ppK 751 (763)
T KOG0944|consen 674 MDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK-EGKWVLFNDEKVA-ASQEPPK 751 (763)
T ss_pred ccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEee-cCcEEEEcchhhh-hccCChh
Confidence 0 0 999999999999999999999998 7999999999999 4444444
Q ss_pred -ceEEEEEEEeC
Q psy13202 201 -NAYVVIYELLP 211 (242)
Q Consensus 201 -~aYiLfY~r~~ 211 (242)
.+||.||+|..
T Consensus 752 ~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 752 DLGYVYLYTRIA 763 (763)
T ss_pred hcceEEEEEecC
Confidence 99999999963
No 21
>KOG1868|consensus
Probab=100.00 E-value=5.7e-35 Score=270.41 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=180.7
Q ss_pred HHHHHHHhc-CCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC----------------------
Q psy13202 3 KTLAACQAE-SGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI---------------------- 59 (242)
Q Consensus 3 ~ll~~~~~~-~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~---------------------- 59 (242)
.++..++-+ ...++.|..|+..+.+..+.|.++.|||||||+..+++.||++++...
T Consensus 356 ~~l~~~~~~~~~~s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s 435 (653)
T KOG1868|consen 356 KLLQKLWHGHGQFSVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDS 435 (653)
T ss_pred HhhhhhccCCCceecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCcccccccccccccccc
Confidence 345555544 567899999999999999999999999999999999999999986531
Q ss_pred ---------------------cc---------------c----cceeeeeeCCC------CCCHHHHHHhhcccccccCC
Q psy13202 60 ---------------------SG---------------S----NNLELSLDIYQ------LSSLDEALGQFFAKEYLVRD 93 (242)
Q Consensus 60 ---------------------f~---------------S----~f~~l~l~i~~------~~sl~~~l~~~~~~e~i~~~ 93 (242)
|. | .|++++|+|+. ..+|++|+..|++.|.++++
T Consensus 436 ~~s~~~w~~~~~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~ 515 (653)
T KOG1868|consen 436 KKSLAEWLRYLEEEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGD 515 (653)
T ss_pred chhHHHHHhhccccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccc
Confidence 10 2 99999999995 24699999999999999999
Q ss_pred CccccCcCCCceeEE--EEEEccccCceeEEEEEEEee---cccccceeEEecc-ccccCccccCCC------ceeEEEE
Q psy13202 94 NLYQCEKCGYKTEAT--KQFSIEKPPIVFILLLKRFNY---LCLKISCAVQVPL-YLEFGKFMHCRR------NLVSAVI 161 (242)
Q Consensus 94 ~~~~C~~C~~~~~~~--~~~~i~~~P~vL~i~l~Rf~~---~~~K~~~~v~fp~-~Ldl~~~~~~~~------~L~~vI~ 161 (242)
+.|.|+.|+.+.... |+..|.++|++|+|||+||.. ...|....|.||. ..++.++..... +|+|||+
T Consensus 516 ~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~ 595 (653)
T KOG1868|consen 516 EAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVN 595 (653)
T ss_pred cccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEe
Confidence 999999999999886 999999999999999999983 4588889999995 344443322211 9999999
Q ss_pred eecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeCCCcc
Q psy13202 162 HHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLPSSLH 215 (242)
Q Consensus 162 H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~~~~~ 215 (242)
|.| +..+|||+|+|+.. .+.|+.|||+.|+.++...+. .||||||+|.+..+.
T Consensus 596 H~G-tl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~~ 651 (653)
T KOG1868|consen 596 HSG-TLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFEE 651 (653)
T ss_pred ccC-cccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcccc
Confidence 999 69999999999764 678999999999999888887 999999999988764
No 22
>KOG1867|consensus
Probab=100.00 E-value=3.8e-34 Score=260.00 Aligned_cols=211 Identities=30% Similarity=0.449 Sum_probs=188.1
Q ss_pred HHHHHHHHhcC-CCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhc---------CC----------Ccc
Q psy13202 2 RKTLAACQAES-GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYL---------KV----------ISG 61 (242)
Q Consensus 2 ~~ll~~~~~~~-~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~---------~~----------~f~ 61 (242)
.++++.++++. ..+++|..+++.+++..+.+.+++|||||||+..+++.++.+.. +. .|.
T Consensus 212 ~~~~~~~~s~~~~~~~sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~ 291 (492)
T KOG1867|consen 212 DRLFQALYSGHNRTPYSPFELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFS 291 (492)
T ss_pred hhhhhHhhcCCCCCCcChHHHHHHHHHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeec
Confidence 46788999998 89999999999999999999999999999999999999998871 00 132
Q ss_pred ---------------c----cceeeeeeCCCC----------CCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEE
Q psy13202 62 ---------------S----NNLELSLDIYQL----------SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFS 112 (242)
Q Consensus 62 ---------------S----~f~~l~l~i~~~----------~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~ 112 (242)
| +|++|+|+|+.. .++.+++..+...+......++.|..|+.++.++++..
T Consensus 292 G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~ 371 (492)
T KOG1867|consen 292 GTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLT 371 (492)
T ss_pred ceeccceeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccc
Confidence 2 999999999853 56999999999888877788899999999999999999
Q ss_pred ccccCceeEEEEEEEee----cccccceeEEeccccccCccccC--------CC---ceeEEEEeecccCCCCcEEEEEe
Q psy13202 113 IEKPPIVFILLLKRFNY----LCLKISCAVQVPLYLEFGKFMHC--------RR---NLVSAVIHHGSSSFSGHYNCIGS 177 (242)
Q Consensus 113 i~~~P~vL~i~l~Rf~~----~~~K~~~~v~fp~~Ldl~~~~~~--------~~---~L~~vI~H~G~s~~~GHY~~~vr 177 (242)
|.++|.+|.+|++||.+ ...|+...|.||..|++.+|+.. +. +|.|||+|.|. .++|||+||+|
T Consensus 372 ~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r 450 (492)
T KOG1867|consen 372 IRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRR 450 (492)
T ss_pred cccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEE
Confidence 99999999999999982 22399999999999999998875 12 99999999997 99999999999
Q ss_pred cCCCCeEEEcCCcceeecccccc--ceEEEEEEEeCCCc
Q psy13202 178 TSSGSYHYFGDDRVQASNLQQVT--NAYVVIYELLPSSL 214 (242)
Q Consensus 178 ~~~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~~~~ 214 (242)
. .+.|++|||+.|+.++.++|. .||+|||.+.....
T Consensus 451 ~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~~ 488 (492)
T KOG1867|consen 451 Q-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVEY 488 (492)
T ss_pred e-CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhhh
Confidence 8 788999999999999999999 99999999876544
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=262.59 Aligned_cols=225 Identities=24% Similarity=0.347 Sum_probs=194.2
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------c------------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------S------------ 60 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f------------ 60 (242)
||++|-.|+.+. .|++..+|...++-. .+....|+|.|||...|.|.|+....... |
T Consensus 240 LQr~Fynlq~~~-~PvdTteltrsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvn 316 (1089)
T COG5077 240 LQRLFYNLQTGE-EPVDTTELTRSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVN 316 (1089)
T ss_pred HHHHHHHHhccC-CCcchHHhhhhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEE
Confidence 688888888665 599999998877632 35667899999999999999998755433 1
Q ss_pred ---cc----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe-----
Q psy13202 61 ---GS----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN----- 128 (242)
Q Consensus 61 ---~S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~----- 128 (242)
.| .||++.|++++..+|++++++|.+.|.++|+|+|.|++-| -+.|.|-.-+.++|++|.+|||||.
T Consensus 317 vnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~ 395 (1089)
T COG5077 317 VNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFER 395 (1089)
T ss_pred echhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhcccccc
Confidence 13 9999999999999999999999999999999999999954 6789999999999999999999998
Q ss_pred ecccccceeEEeccccccCccccCCC----------ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeeccc
Q psy13202 129 YLCLKISCAVQVPLYLEFGKFMHCRR----------NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQ 197 (242)
Q Consensus 129 ~~~~K~~~~v~fp~~Ldl~~~~~~~~----------~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~ 197 (242)
..+.|++++.+||+++|+.+|..... .|+||++|.|+ ...|||+|++|.. +|+||+|||++|+.+...
T Consensus 396 d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~k 474 (1089)
T COG5077 396 DMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEK 474 (1089)
T ss_pred CceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHH
Confidence 34589999999999999999987632 89999999997 9999999999965 899999999999999998
Q ss_pred ccc------------------------ceEEEEEEEeCCCcccCCCCCCCCCCCCCC
Q psy13202 198 QVT------------------------NAYVVIYELLPSSLHHLNSSLHSSSPGSVE 230 (242)
Q Consensus 198 ~v~------------------------~aYiLfY~r~~~~~~~~~~~~~~~~~~~~~ 230 (242)
+|+ +||||+|-|++...+-++..+...-|..+.
T Consensus 475 evleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddLlnPV~a~diP~hv~ 531 (1089)
T COG5077 475 EVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDIPPHVE 531 (1089)
T ss_pred HHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhhhCchhhhhCCHHHH
Confidence 877 889999999998887777666655555443
No 24
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1e-32 Score=232.63 Aligned_cols=192 Identities=28% Similarity=0.462 Sum_probs=146.3
Q ss_pred CHHHHHHHHhc--CCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCccccceeeeeeCCCCCCHH
Q psy13202 1 MRKTLAACQAE--SGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSSLD 78 (242)
Q Consensus 1 l~~ll~~~~~~--~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~f~S~f~~l~l~i~~~~sl~ 78 (242)
|++++..|+.+ ....+.|..|+.+++...+.|..+.||||+||+..|++.|+++.....-.. .+. .......
T Consensus 55 l~~l~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~---~~~---~~~~~~~ 128 (269)
T PF00443_consen 55 LQNLFRSLWSSNSSDSSISPSDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRK---SWK---NTNSSED 128 (269)
T ss_dssp HHHHHHHHHSSCSSSSEEHCHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHH---HHH---HHHCCEE
T ss_pred hhhhhhhhhhhcccccceeeccccccccccccccccccccchhhhhcccccccchhhccccccc---ccc---ccccccc
Confidence 46789999988 678999999999999999999999999999999999999999876410000 000 0000111
Q ss_pred HHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe-----ecccccceeEEec-cccccCccccC
Q psy13202 79 EALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN-----YLCLKISCAVQVP-LYLEFGKFMHC 152 (242)
Q Consensus 79 ~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~-----~~~~K~~~~v~fp-~~Ldl~~~~~~ 152 (242)
..+...+...... ...|..|+.. ...+.++|++|+|+|+||. ....|+...|.|| +.||+.++...
T Consensus 129 ~~~~~~f~~~~~~---~~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~ 200 (269)
T PF00443_consen 129 SLISDLFGGQFES---SIKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEK 200 (269)
T ss_dssp SHHHHHH-EEEEE---EEEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSS
T ss_pred ccccccccccccc---cccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhcc
Confidence 1223333333322 3789999877 6788999999999999995 2358999999999 79999988754
Q ss_pred CC---------ceeEEEEeecccCCCCcEEEEEecCC-CCeEEEcCCcceeecccccc-----ceEEEEE
Q psy13202 153 RR---------NLVSAVIHHGSSSFSGHYNCIGSTSS-GSYHYFGDDRVQASNLQQVT-----NAYVVIY 207 (242)
Q Consensus 153 ~~---------~L~~vI~H~G~s~~~GHY~~~vr~~~-~~W~~~nD~~V~~~~~~~v~-----~aYiLfY 207 (242)
+. +|+|||+|.| +.++|||+||+|..+ ++|++|||++|++++.+++. +||||||
T Consensus 201 ~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 201 NNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp CCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 31 9999999999 699999999999864 46999999999999999885 9999999
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.5e-32 Score=224.04 Aligned_cols=183 Identities=36% Similarity=0.576 Sum_probs=153.1
Q ss_pred ccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC----------------CCcc-----------------
Q psy13202 15 AIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK----------------VISG----------------- 61 (242)
Q Consensus 15 ~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~----------------~~f~----------------- 61 (242)
.+--...++.|.. .||||+||+..+++.|+.++.. ..|+
T Consensus 8 ~Cy~ns~lq~l~~--------~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~ 79 (255)
T cd02257 8 TCYLNSVLQALFS--------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESV 79 (255)
T ss_pred chHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCcc
Confidence 3444555566654 9999999999999999987653 1243
Q ss_pred --ccceeeeeeCCC----CCCHHHHHHhhcccccccCCCccccCcCC--CceeEEEEEEccccCceeEEEEEEEee----
Q psy13202 62 --SNNLELSLDIYQ----LSSLDEALGQFFAKEYLVRDNLYQCEKCG--YKTEATKQFSIEKPPIVFILLLKRFNY---- 129 (242)
Q Consensus 62 --S~f~~l~l~i~~----~~sl~~~l~~~~~~e~i~~~~~~~C~~C~--~~~~~~~~~~i~~~P~vL~i~l~Rf~~---- 129 (242)
..+..+.++++. ..+|+++|+.++..+.+.+ ..|..|+ ..+.+.++..+.++|++|+|+++||..
T Consensus 80 ~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~ 156 (255)
T cd02257 80 STEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDG 156 (255)
T ss_pred CcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeecccc
Confidence 156666666664 4799999999999998886 7899998 688899999999999999999999984
Q ss_pred cccccceeEEeccccccCccccC----------CC--ceeEEEEeecccCCCCcEEEEEecCC-CCeEEEcCCcceeecc
Q psy13202 130 LCLKISCAVQVPLYLEFGKFMHC----------RR--NLVSAVIHHGSSSFSGHYNCIGSTSS-GSYHYFGDDRVQASNL 196 (242)
Q Consensus 130 ~~~K~~~~v~fp~~Ldl~~~~~~----------~~--~L~~vI~H~G~s~~~GHY~~~vr~~~-~~W~~~nD~~V~~~~~ 196 (242)
...|+...|.+|+.+++..+... .. +|+|||+|.|.+..+|||+|++|..+ ++|++|||..|++++.
T Consensus 157 ~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~ 236 (255)
T cd02257 157 TKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSE 236 (255)
T ss_pred ccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCH
Confidence 46899999999999999877642 11 99999999998669999999999864 8999999999999999
Q ss_pred ccc-----c--ceEEEEEE
Q psy13202 197 QQV-----T--NAYVVIYE 208 (242)
Q Consensus 197 ~~v-----~--~aYiLfY~ 208 (242)
+++ . +||+|||+
T Consensus 237 ~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 237 EEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred HHhhhccCCCCceEEEEEC
Confidence 998 2 99999995
No 26
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.3e-31 Score=224.01 Aligned_cols=150 Identities=22% Similarity=0.366 Sum_probs=121.0
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCC---cc------------c-cceeeeeeCC---CCCCHHHHHHhhcccccccCCCcc
Q psy13202 36 RPEDSHEFLLYLIEGIHRSYLKVI---SG------------S-NNLELSLDIY---QLSSLDEALGQFFAKEYLVRDNLY 96 (242)
Q Consensus 36 ~QqDa~Efl~~ll~~l~~~~~~~~---f~------------S-~f~~l~l~i~---~~~sl~~~l~~~~~~e~i~~~~~~ 96 (242)
+|||+.||+++|++.+...+.... |. + .++.|.++.. +..||++||+.|++.|.
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~------- 94 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLEPKVDIIHGGKKDQDDDKLVNERLLQIPVPDDDDGGGITLEQCLEQYFNNSV------- 94 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhhHHHHHHhcCccccccccccccceEEeecccCCCCCcCCHHHHHHHHhchhh-------
Confidence 999999999999999887544332 21 1 4445555433 25799999999998884
Q ss_pred ccCcCCCceeEEEEEEccccCceeEEEEEEEeec---ccccceeEEeccccccCccccCC--------------------
Q psy13202 97 QCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL---CLKISCAVQVPLYLEFGKFMHCR-------------------- 153 (242)
Q Consensus 97 ~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~---~~K~~~~v~fp~~Ldl~~~~~~~-------------------- 153 (242)
|.++|++|+||||||.+. ..|+++.|.||..|||.+++...
T Consensus 95 ----------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (241)
T cd02670 95 ----------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDF 158 (241)
T ss_pred ----------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhhcccccccccccccccccccccccc
Confidence 789999999999999953 48999999999999999986431
Q ss_pred --C------ceeEEEEeecccCCCCcEEEEEecCC------------CCeEEEcCCcceeeccc------ccc--ceEEE
Q psy13202 154 --R------NLVSAVIHHGSSSFSGHYNCIGSTSS------------GSYHYFGDDRVQASNLQ------QVT--NAYVV 205 (242)
Q Consensus 154 --~------~L~~vI~H~G~s~~~GHY~~~vr~~~------------~~W~~~nD~~V~~~~~~------~v~--~aYiL 205 (242)
. +|+|||+|.|.+.++|||+||+|... +.|++|||..|+.+... .+. +||||
T Consensus 159 ~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmL 238 (241)
T cd02670 159 SPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYML 238 (241)
T ss_pred cCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEE
Confidence 1 79999999998799999999999864 68999999988776432 223 99999
Q ss_pred EEE
Q psy13202 206 IYE 208 (242)
Q Consensus 206 fY~ 208 (242)
||+
T Consensus 239 FYq 241 (241)
T cd02670 239 FYQ 241 (241)
T ss_pred EeC
Confidence 995
No 27
>KOG4598|consensus
Probab=99.97 E-value=1.6e-32 Score=248.47 Aligned_cols=208 Identities=24% Similarity=0.424 Sum_probs=174.2
Q ss_pred HHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------c-------------c--c
Q psy13202 6 AACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------S-------------G--S 62 (242)
Q Consensus 6 ~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f-------------~--S 62 (242)
.+++.+...++-..++-+.++-- .-..++|+|.||+-..++|+|+-..+... + | +
T Consensus 114 ~~~yts~~~~~et~dlt~sfgw~--s~ea~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c~~e~ 191 (1203)
T KOG4598|consen 114 SKCYTSENDSLETKDLTQSFGWT--SNEAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKCGRES 191 (1203)
T ss_pred hhhhCCCcccccchhhHhhcCCC--cchhhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHcCccc
Confidence 34555555666666666555411 12346999999999999999986654432 1 1 2
Q ss_pred ----cceeeeeeCCC------CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe----
Q psy13202 63 ----NNLELSLDIYQ------LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN---- 128 (242)
Q Consensus 63 ----~f~~l~l~i~~------~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~---- 128 (242)
.|++|.|++.+ -.+++++|..|.++|.++|.|+|.|++|++++.+.|-..|..+|-+|.||||||.
T Consensus 192 ~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~ 271 (1203)
T KOG4598|consen 192 VKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYN 271 (1203)
T ss_pred cccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccch
Confidence 89999999875 4599999999999999999999999999999999999999999999999999998
Q ss_pred -ecccccceeEEeccccccCccccC-------------------------------------------------------
Q psy13202 129 -YLCLKISCAVQVPLYLEFGKFMHC------------------------------------------------------- 152 (242)
Q Consensus 129 -~~~~K~~~~v~fp~~Ldl~~~~~~------------------------------------------------------- 152 (242)
....|+++++.||..|||..|+..
T Consensus 272 tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~ 351 (1203)
T KOG4598|consen 272 TMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQ 351 (1203)
T ss_pred heeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCC
Confidence 335899999999999999988755
Q ss_pred ---------------CC--ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--------------
Q psy13202 153 ---------------RR--NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT-------------- 200 (242)
Q Consensus 153 ---------------~~--~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~-------------- 200 (242)
|. +|+||++|.|+ +.+|||++|+|+- +++||+|||.+|+.+...++.
T Consensus 352 ~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~ 430 (1203)
T KOG4598|consen 352 PIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSN 430 (1203)
T ss_pred cCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccC
Confidence 00 99999999995 9999999999986 679999999999999998876
Q ss_pred -ceEEEEEEEeCCCccc
Q psy13202 201 -NAYVVIYELLPSSLHH 216 (242)
Q Consensus 201 -~aYiLfY~r~~~~~~~ 216 (242)
+||||.|+|+++...+
T Consensus 431 tnaymlmyr~id~krn~ 447 (1203)
T KOG4598|consen 431 TNAYMLMYRRIDPKRNA 447 (1203)
T ss_pred cchhhhhhhhcCccccc
Confidence 9999999999987643
No 28
>KOG1873|consensus
Probab=99.97 E-value=6.2e-32 Score=246.41 Aligned_cols=136 Identities=31% Similarity=0.458 Sum_probs=120.5
Q ss_pred CCCHHHHHHhhcccccccCCCccccCcCCC---------------------------ceeEEEEEEccccCceeEEEEEE
Q psy13202 74 LSSLDEALGQFFAKEYLVRDNLYQCEKCGY---------------------------KTEATKQFSIEKPPIVFILLLKR 126 (242)
Q Consensus 74 ~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~---------------------------~~~~~~~~~i~~~P~vL~i~l~R 126 (242)
.+|++.||.+|.+.|.+.++|+|.|++|.+ ...+.++..|..+|+||+|||+|
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr 756 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR 756 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence 349999999999999999999999999964 01256788899999999999999
Q ss_pred Ee----ecccccceeEEeccccccCccccC-------CC----ceeEEEEeecccCCCCcEEEEEec-------------
Q psy13202 127 FN----YLCLKISCAVQVPLYLEFGKFMHC-------RR----NLVSAVIHHGSSSFSGHYNCIGST------------- 178 (242)
Q Consensus 127 f~----~~~~K~~~~v~fp~~Ldl~~~~~~-------~~----~L~~vI~H~G~s~~~GHY~~~vr~------------- 178 (242)
|. .+..|.+.++.|++.+|+.+|+.. |+ +|.|||.|.|+ +.+|||++|+|.
T Consensus 757 f~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~~ 835 (877)
T KOG1873|consen 757 FFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNSK 835 (877)
T ss_pred hhhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCccccc
Confidence 98 445899999999999999888754 21 99999999996 999999999996
Q ss_pred --------CCCCeEEEcCCcceeecccccc--ceEEEEEEEe
Q psy13202 179 --------SSGSYHYFGDDRVQASNLQQVT--NAYVVIYELL 210 (242)
Q Consensus 179 --------~~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~ 210 (242)
+.|+||.+.|++|.++++++|+ +||||||+|+
T Consensus 836 ~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 836 DFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2578999999999999999999 9999999995
No 29
>KOG1864|consensus
Probab=99.97 E-value=1.3e-30 Score=240.52 Aligned_cols=199 Identities=29% Similarity=0.420 Sum_probs=173.9
Q ss_pred CCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC---------------------------------
Q psy13202 13 GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------------------------------- 59 (242)
Q Consensus 13 ~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 59 (242)
...+.|..|+..+++.+..|..+.|||||||+..+++.+.+......
T Consensus 298 ~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~ 377 (587)
T KOG1864|consen 298 VGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLR 377 (587)
T ss_pred ccccCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccc
Confidence 46799999999999999999999999999999999999887653221
Q ss_pred -------cc----------------c---cceeeeeeCC--CCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEE
Q psy13202 60 -------SG----------------S---NNLELSLDIY--QLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQF 111 (242)
Q Consensus 60 -------f~----------------S---~f~~l~l~i~--~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~ 111 (242)
|. + .|.+++++++ ...++..+|..|..+|.+.++++|.|++|...++|++++
T Consensus 378 ~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l 457 (587)
T KOG1864|consen 378 ENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRL 457 (587)
T ss_pred hhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhc
Confidence 11 1 8999999999 689999999999999999999999999999999999999
Q ss_pred EccccCceeEEEEEEEeec-----ccccceeEEeccccccCccccCCC------ceeEEEEeecccCCCCcEEEEEecCC
Q psy13202 112 SIEKPPIVFILLLKRFNYL-----CLKISCAVQVPLYLEFGKFMHCRR------NLVSAVIHHGSSSFSGHYNCIGSTSS 180 (242)
Q Consensus 112 ~i~~~P~vL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~------~L~~vI~H~G~s~~~GHY~~~vr~~~ 180 (242)
.++++|.+|+||||||.+. ..|+...|.+|..|.+........ +|+|||+|.|.+++.|||+||+|...
T Consensus 458 ~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~ 537 (587)
T KOG1864|consen 458 KIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLD 537 (587)
T ss_pred cccCCcceeeeehhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCC
Confidence 9999999999999999933 378899999998888765554421 99999999999999999999999844
Q ss_pred CCeEEEcCCcceeecccccc-----ceEEEEEEEeC
Q psy13202 181 GSYHYFGDDRVQASNLQQVT-----NAYVVIYELLP 211 (242)
Q Consensus 181 ~~W~~~nD~~V~~~~~~~v~-----~aYiLfY~r~~ 211 (242)
-.|++|||+.|..++.+.+. .+|+++|...-
T Consensus 538 ~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 538 FNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred CCceecccccccccCcchhhhccCCCccceeeeEEe
Confidence 44999999999999999998 77777776543
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=6.7e-29 Score=211.69 Aligned_cols=162 Identities=22% Similarity=0.182 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHhhcCCC--cc------ccceeeeeeCCC-----CCCHHHHHHhhcccccccCCCccccCcCCCcee
Q psy13202 40 SHEFLLYLIEGIHRSYLKVI--SG------SNNLELSLDIYQ-----LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTE 106 (242)
Q Consensus 40 a~Efl~~ll~~l~~~~~~~~--f~------S~f~~l~l~i~~-----~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~ 106 (242)
.+-|-.+|++.+..+..... -+ .+|+.|+|++|. ..++++||+.+++.|... ++.|++|++++.
T Consensus 69 iq~F~~fll~~i~~~~~~~~~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~ 145 (268)
T cd02672 69 IQNFTRFLLETISQDQLGTPFSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQP 145 (268)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccc
Confidence 56788888888887643321 11 299999999995 469999999999998654 489999999999
Q ss_pred EEEEEEccccCc----eeEEEEEEEeec----------ccccceeEEeccccccCccccCCC------ceeEEEEeeccc
Q psy13202 107 ATKQFSIEKPPI----VFILLLKRFNYL----------CLKISCAVQVPLYLEFGKFMHCRR------NLVSAVIHHGSS 166 (242)
Q Consensus 107 ~~~~~~i~~~P~----vL~i~l~Rf~~~----------~~K~~~~v~fp~~Ldl~~~~~~~~------~L~~vI~H~G~s 166 (242)
+.++.+|.++|+ ||+|||+||... ..|+...|.||+.+++........ +|+|||+|.|.+
T Consensus 146 a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~ 225 (268)
T cd02672 146 LEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDS 225 (268)
T ss_pred cEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCC
Confidence 999999999999 999999999832 256778899998776543322211 999999999986
Q ss_pred CCCCcEEEEEecC-----CCCeEEEcCCcceeeccccccceEEEEEE
Q psy13202 167 SFSGHYNCIGSTS-----SGSYHYFGDDRVQASNLQQVTNAYVVIYE 208 (242)
Q Consensus 167 ~~~GHY~~~vr~~-----~~~W~~~nD~~V~~~~~~~v~~aYiLfY~ 208 (242)
.++|||+|++|.. .++||+|||..|++++. .||||||+
T Consensus 226 ~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~----~aYiLfY~ 268 (268)
T cd02672 226 SRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE----LAYILLYQ 268 (268)
T ss_pred CCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc----hheeeecC
Confidence 6999999999985 47899999999999998 99999995
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-29 Score=220.31 Aligned_cols=204 Identities=22% Similarity=0.368 Sum_probs=164.5
Q ss_pred HHHHHHHhcC----CCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC-------C--cc--------
Q psy13202 3 KTLAACQAES----GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV-------I--SG-------- 61 (242)
Q Consensus 3 ~ll~~~~~~~----~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~-------~--f~-------- 61 (242)
+|+.+|...+ ..-|+|..|+..+++-.+.|...+||||+|||.+||+.|.+..... . |.
T Consensus 356 kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~~~~It~lf~Fe~e~rlsC~ 435 (749)
T COG5207 356 KLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYLIPPITSLFEFEVERRLSCS 435 (749)
T ss_pred HHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhcCCCcchhhhhhhcceeccc
Confidence 4555555444 2569999999999999999999999999999999999999843221 1 21
Q ss_pred -------c--cceeeeeeCCCC---CCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe-
Q psy13202 62 -------S--NNLELSLDIYQL---SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN- 128 (242)
Q Consensus 62 -------S--~f~~l~l~i~~~---~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~- 128 (242)
| +...+.+++.++ .++.++++.||.+++++ |.|++|+.+..+.++..|+++|++||+|..||.
T Consensus 436 ~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~l 511 (749)
T COG5207 436 GCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSL 511 (749)
T ss_pred ccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeec
Confidence 3 556666666653 57999999999999999 999999999999999999999999999999999
Q ss_pred --ecccccceeEEecc--ccccCccccC----------------------------------------------------
Q psy13202 129 --YLCLKISCAVQVPL--YLEFGKFMHC---------------------------------------------------- 152 (242)
Q Consensus 129 --~~~~K~~~~v~fp~--~Ldl~~~~~~---------------------------------------------------- 152 (242)
+...|+..++.+.. .+++..++..
T Consensus 512 qny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAM 591 (749)
T COG5207 512 QNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAM 591 (749)
T ss_pred cceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHH
Confidence 44567777666653 4666665544
Q ss_pred --------------------------------------------------------------------------------
Q psy13202 153 -------------------------------------------------------------------------------- 152 (242)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (242)
T Consensus 592 NWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~ 671 (749)
T COG5207 592 NWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPN 671 (749)
T ss_pred HHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCc
Confidence
Q ss_pred ---------------CCceeEEEEeecccCCCCcEEEEEecC-C--CCeEEEcCCcceeecccccc--ceEEEEEEEe
Q psy13202 153 ---------------RRNLVSAVIHHGSSSFSGHYNCIGSTS-S--GSYHYFGDDRVQASNLQQVT--NAYVVIYELL 210 (242)
Q Consensus 153 ---------------~~~L~~vI~H~G~s~~~GHY~~~vr~~-~--~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~ 210 (242)
|..|.|||+|.|+++.+|||++++|.. . -+|+++||+.+...+.-++. ++||.||+|.
T Consensus 672 eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 672 EEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred hhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 118999999999999999999999985 2 26999999998877665555 8999999983
No 32
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.2e-27 Score=210.28 Aligned_cols=175 Identities=18% Similarity=0.234 Sum_probs=141.7
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC---------------------C
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV---------------------I 59 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------~ 59 (242)
||.||..|+.++..++.|..++..+.. .||||+||+..+++.|+.++... .
T Consensus 70 L~~LF~~l~~s~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~l 141 (343)
T cd02666 70 LRSLFNDLIHSNTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRL 141 (343)
T ss_pred HHHHHHHHHhCCCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHh
Confidence 688999999998899999999987762 99999999999999999987421 1
Q ss_pred cc------------------c----cceeeeeeCCC----------CCCHHHHHHhhcccccccCCCccccCcCCCceeE
Q psy13202 60 SG------------------S----NNLELSLDIYQ----------LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEA 107 (242)
Q Consensus 60 f~------------------S----~f~~l~l~i~~----------~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~ 107 (242)
|+ | .|++|+++|+. ..+|.++|+.|++.|.
T Consensus 142 F~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~------------------ 203 (343)
T cd02666 142 FSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS------------------ 203 (343)
T ss_pred ceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh------------------
Confidence 32 1 99999999985 6899999999998874
Q ss_pred EEEEEccccCceeEEEEEEEe---ecccccceeEEeccccccCccccC-------------------------------C
Q psy13202 108 TKQFSIEKPPIVFILLLKRFN---YLCLKISCAVQVPLYLEFGKFMHC-------------------------------R 153 (242)
Q Consensus 108 ~~~~~i~~~P~vL~i~l~Rf~---~~~~K~~~~v~fp~~Ldl~~~~~~-------------------------------~ 153 (242)
|.++|++|.|||+ +. ....+...+.++|...+..++... .
T Consensus 204 -----~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (343)
T cd02666 204 -----LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLK 277 (343)
T ss_pred -----hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 7889999999988 33 333455555666654443332211 0
Q ss_pred C---ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--------ceEEEEEE
Q psy13202 154 R---NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--------NAYVVIYE 208 (242)
Q Consensus 154 ~---~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--------~aYiLfY~ 208 (242)
. +|+|||+|.|. .++|||++|+|.. ++.|++|||..|++++..++. +||+|+|.
T Consensus 278 ~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 278 SYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred CCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 1 99999999996 6999999999975 579999999999999998876 99999994
No 33
>KOG1863|consensus
Probab=99.94 E-value=2.9e-27 Score=233.44 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=193.4
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------cc-----------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------SG----------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f~----------- 61 (242)
||.+|..|+.++.++++|.++...+.... .....|||++||+..|+|.|++.+.... |.
T Consensus 219 lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~ 296 (1093)
T KOG1863|consen 219 LQRLFYELQMSKRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCID 296 (1093)
T ss_pred HHHHHHHHhhcCCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEe
Confidence 68999999999999999999999998665 5567999999999999999998865432 22
Q ss_pred --------ccceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee----
Q psy13202 62 --------SNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY---- 129 (242)
Q Consensus 62 --------S~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~---- 129 (242)
+.|+++.+++.+..++.++|..|+..|.+.|+|+ .|.+|+..+.+.+...+.++|++|.|+|+||.+
T Consensus 297 ~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~ 375 (1093)
T KOG1863|consen 297 VDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFST 375 (1093)
T ss_pred eeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccC
Confidence 2999999999999999999999999999999998 899999999999999999999999999999994
Q ss_pred -cccccceeEEeccccccCccccCCC----------ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeeccc
Q psy13202 130 -LCLKISCAVQVPLYLEFGKFMHCRR----------NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQ 197 (242)
Q Consensus 130 -~~~K~~~~v~fp~~Ldl~~~~~~~~----------~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~ 197 (242)
...|++..++||..|++.++...+. +|.||.+|.|. ..+|||++|++.. .++|++|||..|+.++..
T Consensus 376 ~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~ 454 (1093)
T KOG1863|consen 376 GQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEK 454 (1093)
T ss_pred CceeehhhccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeeccHH
Confidence 3489999999999999999966311 99999999885 9999999999965 889999999999999977
Q ss_pred ccc------------------ceEEEEEEEeCCCcccCCCCCCCCCC
Q psy13202 198 QVT------------------NAYVVIYELLPSSLHHLNSSLHSSSP 226 (242)
Q Consensus 198 ~v~------------------~aYiLfY~r~~~~~~~~~~~~~~~~~ 226 (242)
+++ .||+|+|.|.+....-+...+..+.|
T Consensus 455 ~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~~~~v~e~~i~ 501 (1093)
T KOG1863|consen 455 EALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKILKDISESSIP 501 (1093)
T ss_pred HHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhhhcccchhhcc
Confidence 765 28999999998887666554444433
No 34
>KOG1870|consensus
Probab=99.93 E-value=1.8e-26 Score=222.81 Aligned_cols=137 Identities=28% Similarity=0.477 Sum_probs=128.1
Q ss_pred CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe---ecccccceeEEec-cccccCcc
Q psy13202 74 LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN---YLCLKISCAVQVP-LYLEFGKF 149 (242)
Q Consensus 74 ~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~---~~~~K~~~~v~fp-~~Ldl~~~ 149 (242)
..+|++||+.|+.+|.+..+++|.|++|++.+.|.|+..++++|++|+||||||+ ....|+.+.|+|| ..||+++|
T Consensus 695 ~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~ 774 (842)
T KOG1870|consen 695 PNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEF 774 (842)
T ss_pred cccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchh
Confidence 3499999999999999999999999999999999999999999999999999999 4458999999999 67999999
Q ss_pred ccCCC----ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeC
Q psy13202 150 MHCRR----NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLP 211 (242)
Q Consensus 150 ~~~~~----~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~ 211 (242)
+..+. +|+||++|+|. +.+|||+||+|.. +++||.|||+.|.+++.+++. .||+|||+|++
T Consensus 775 ~~~~~~~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 775 VVNKEQVLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred hccCccceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 99885 99999999995 9999999999995 889999999999999999988 99999999974
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.90 E-value=3.8e-23 Score=179.01 Aligned_cols=188 Identities=21% Similarity=0.254 Sum_probs=156.0
Q ss_pred CHHHHHHHH-hcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------------------
Q psy13202 1 MRKTLAACQ-AESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI-------------------- 59 (242)
Q Consensus 1 l~~ll~~~~-~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~-------------------- 59 (242)
|.-||..|. .+.+..+.+.+|+++++........+.|+|+++|+.+|++.|+.++....
T Consensus 45 LgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 124 (295)
T PF13423_consen 45 LGFLFDMLDSKAKGINCQASNFLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQ 124 (295)
T ss_pred HHHHHHHhhhhcCCCcChHHHHHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHH
Confidence 345777777 77889999999999999887666677899999999999999998853211
Q ss_pred -cc-------------------ccceeeeeeCCC---CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEcccc
Q psy13202 60 -SG-------------------SNNLELSLDIYQ---LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKP 116 (242)
Q Consensus 60 -f~-------------------S~f~~l~l~i~~---~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~ 116 (242)
|| +....+.+..|. ..++.++|+.++..+.... ..|++|++.+....+.+|.++
T Consensus 125 ~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~L 201 (295)
T PF13423_consen 125 LFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSL 201 (295)
T ss_pred HhCcceeeeecccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCC
Confidence 33 145555555554 5799999999999888775 899999999999999999999
Q ss_pred CceeEEEEEEEe---ecccccceeEEeccccccCccccCC---------C----ceeEEEEeecccCCCCcEEEEEecC-
Q psy13202 117 PIVFILLLKRFN---YLCLKISCAVQVPLYLEFGKFMHCR---------R----NLVSAVIHHGSSSFSGHYNCIGSTS- 179 (242)
Q Consensus 117 P~vL~i~l~Rf~---~~~~K~~~~v~fp~~Ldl~~~~~~~---------~----~L~~vI~H~G~s~~~GHY~~~vr~~- 179 (242)
|+||.|.++|.. .+..|+...+.+|..+++..++... . +|.|+|+|.|++.++|||++++|..
T Consensus 202 PpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~ 281 (295)
T PF13423_consen 202 PPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGP 281 (295)
T ss_pred CcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCC
Confidence 999999999998 3367888899999888887776331 1 9999999999999999999999986
Q ss_pred --CCCeEEEcCCcc
Q psy13202 180 --SGSYHYFGDDRV 191 (242)
Q Consensus 180 --~~~W~~~nD~~V 191 (242)
+++||+|||..|
T Consensus 282 ~~~~~W~lFNDflV 295 (295)
T PF13423_consen 282 SDDSQWYLFNDFLV 295 (295)
T ss_pred CCCCcEEEECcEeC
Confidence 369999999765
No 36
>KOG1871|consensus
Probab=99.86 E-value=6.7e-22 Score=170.06 Aligned_cols=195 Identities=29% Similarity=0.387 Sum_probs=159.5
Q ss_pred CCccChHHHHHHHHhhc--CCCCCCCCCcHHHHHHHHHHHHHHhhcCCC-------------------------------
Q psy13202 13 GSAIIPELIINKLKLIA--HHFEYYRPEDSHEFLLYLIEGIHRSYLKVI------------------------------- 59 (242)
Q Consensus 13 ~~~i~p~~~~~~l~~~~--~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~------------------------------- 59 (242)
+.++-|..+...+.... .....|.|.||.||+..++|.||++.....
T Consensus 118 ~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~ 197 (420)
T KOG1871|consen 118 GDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAG 197 (420)
T ss_pred CccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhcc
Confidence 34566666665555433 234569999999999999999999963211
Q ss_pred --------------------------------cc--------------c----cceeeeeeC--CCCCCHHHHHHhhccc
Q psy13202 60 --------------------------------SG--------------S----NNLELSLDI--YQLSSLDEALGQFFAK 87 (242)
Q Consensus 60 --------------------------------f~--------------S----~f~~l~l~i--~~~~sl~~~l~~~~~~ 87 (242)
|| | +|..+.|+| .+..++++++..+...
T Consensus 198 ~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq~~~i~sv~~ales~~~r 277 (420)
T KOG1871|consen 198 LSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQSEKIHSVQDALESLVAR 277 (420)
T ss_pred cccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeeeccccCCHHHHhhccChh
Confidence 32 2 999999999 5678999999999999
Q ss_pred ccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe----ecccccceeEEeccccccCccccCCC---------
Q psy13202 88 EYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN----YLCLKISCAVQVPLYLEFGKFMHCRR--------- 154 (242)
Q Consensus 88 e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~----~~~~K~~~~v~fp~~Ldl~~~~~~~~--------- 154 (242)
|.+.+ |.-. -+....+.++..+.++|++|++|++||. ....|+.+.+++|-.|.+...+..+.
T Consensus 278 e~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~ 353 (420)
T KOG1871|consen 278 ESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIAT 353 (420)
T ss_pred hcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccc
Confidence 98885 4433 5778889999999999999999999998 44589999999998888776655322
Q ss_pred ---ceeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc------ceEEEEEEEeC
Q psy13202 155 ---NLVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT------NAYVVIYELLP 211 (242)
Q Consensus 155 ---~L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~------~aYiLfY~r~~ 211 (242)
+|.|||.|.|++...|||..-+-+. .+.|+.+||..|..+..++|. +||+|.|.+.+
T Consensus 354 ~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 354 RPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred cccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 9999999999999999999999875 456999999999999999998 99999999863
No 37
>KOG1872|consensus
Probab=99.82 E-value=7.2e-21 Score=167.45 Aligned_cols=203 Identities=22% Similarity=0.216 Sum_probs=152.4
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCC------CCCCcHHHHHHHHHHHHHHhhcCC------------Ccc-
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEY------YRPEDSHEFLLYLIEGIHRSYLKV------------ISG- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~------~~QqDa~Efl~~ll~~l~~~~~~~------------~f~- 61 (242)
|+.+|..+..+ +++.|..+++.+.+..|+|.. +.||||.|....++-.++..+... .||
T Consensus 157 mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 157 TRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGA 234 (473)
T ss_pred HHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhcc
Confidence 35677777766 799999999999999998875 799999999999999888764321 133
Q ss_pred ----------c----------cceeeeeeCCC-CCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCcee
Q psy13202 62 ----------S----------NNLELSLDIYQ-LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVF 120 (242)
Q Consensus 62 ----------S----------~f~~l~l~i~~-~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL 120 (242)
| .|+.|+.-+.. ...+...|..-++.+... .-+.-|......+.+.|.++|.+|
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~yl 309 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYL 309 (473)
T ss_pred ccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccc
Confidence 0 44444444432 223333333322222111 112223333456677899999999
Q ss_pred EEEEEEEee-----cccccceeEEeccccccCccccC-------------------------------------------
Q psy13202 121 ILLLKRFNY-----LCLKISCAVQVPLYLEFGKFMHC------------------------------------------- 152 (242)
Q Consensus 121 ~i~l~Rf~~-----~~~K~~~~v~fp~~Ldl~~~~~~------------------------------------------- 152 (242)
.|+..||.+ ...|+-..|.||..||..+.+..
T Consensus 310 Tvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~ 389 (473)
T KOG1872|consen 310 TVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEG 389 (473)
T ss_pred eEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccc
Confidence 999999983 34678889999999999888766
Q ss_pred ---------C-C---ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecccccc---------ceEEEEEEEe
Q psy13202 153 ---------R-R---NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVT---------NAYVVIYELL 210 (242)
Q Consensus 153 ---------~-~---~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v~---------~aYiLfY~r~ 210 (242)
. . +|+|||.|.|.|..+|||++++|...+.|+.|||..|+.+..+.+. .||||.|+-+
T Consensus 390 ~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 390 MYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred hhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 0 0 8999999999999999999999999889999999999999998887 9999999754
No 38
>KOG2026|consensus
Probab=99.77 E-value=8.5e-19 Score=150.60 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=151.5
Q ss_pred CHHHHHHHHhcCC--CccChHHHHHHHHhhcC-CCCCCCCCcHHHHHHHHHHHHHHhhcCCC---------cc-------
Q psy13202 1 MRKTLAACQAESG--SAIIPELIINKLKLIAH-HFEYYRPEDSHEFLLYLIEGIHRSYLKVI---------SG------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~--~~i~p~~~~~~l~~~~~-~f~~~~QqDa~Efl~~ll~~l~~~~~~~~---------f~------- 61 (242)
|..+++++|+.+. +.+||.+|++++-.... .|..++|-|+.|||.|||+.||.++.... |.
T Consensus 180 l~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k 259 (442)
T KOG2026|consen 180 LGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVK 259 (442)
T ss_pred HHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeee
Confidence 3568899998764 88999999999976653 68899999999999999999999976543 32
Q ss_pred ----------------ccceeeeeeCCCC--------------CCHHHHHHhhcccccccCCCccccCcCCCceeEEEEE
Q psy13202 62 ----------------SNNLELSLDIYQL--------------SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQF 111 (242)
Q Consensus 62 ----------------S~f~~l~l~i~~~--------------~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~ 111 (242)
++|+.|+|++|+. ..|-+.|..|-....-+ +. ....+ ++.
T Consensus 260 ~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf 329 (442)
T KOG2026|consen 260 EKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRF 329 (442)
T ss_pred eccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hhe
Confidence 2999999999963 35666666654332211 11 11123 778
Q ss_pred EccccCceeEEEEEEEe---ecccccceeEEec-cccccCccccC---CC------ceeEEEEeecccCCCCcEEEEEec
Q psy13202 112 SIEKPPIVFILLLKRFN---YLCLKISCAVQVP-LYLEFGKFMHC---RR------NLVSAVIHHGSSSFSGHYNCIGST 178 (242)
Q Consensus 112 ~i~~~P~vL~i~l~Rf~---~~~~K~~~~v~fp-~~Ldl~~~~~~---~~------~L~~vI~H~G~s~~~GHY~~~vr~ 178 (242)
.+.++|++||+|++||. +-..|+.+.++|| ..+++.+.... +. .|.|-++|. ..-|||...+++
T Consensus 330 ~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~ 406 (442)
T KOG2026|consen 330 RLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYD 406 (442)
T ss_pred eeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEe
Confidence 89999999999999998 5568999999999 55665444332 11 778888886 567999999998
Q ss_pred C-CCCeEEEcCCcceeecccccc--ceEEEEEEEe
Q psy13202 179 S-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELL 210 (242)
Q Consensus 179 ~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~ 210 (242)
+ .++||.++|-.|++...+-+. .+||-+|++.
T Consensus 407 ~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 407 NSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred CCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 6 779999999999998887776 8888888764
No 39
>KOG1275|consensus
Probab=99.13 E-value=4.1e-10 Score=106.28 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=92.3
Q ss_pred cccCcCCCceeEEEEEEccccCceeEEEEEEEe-----e--cccccceeEEeccccccCccccC----------------
Q psy13202 96 YQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN-----Y--LCLKISCAVQVPLYLEFGKFMHC---------------- 152 (242)
Q Consensus 96 ~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~-----~--~~~K~~~~v~fp~~Ldl~~~~~~---------------- 152 (242)
-.|+.|++.+....+..+..+|.+|.|...-+. + +..|....|.+|+.+-+...-.+
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~ 781 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLP 781 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCc
Confidence 589999999999999999999999999988776 2 22455667788876554332211
Q ss_pred ----CC----ceeEEEEeecccCCCCcEEEEEecC---------CCCeEEEcCCcceeecccccc-------ceEEEEE
Q psy13202 153 ----RR----NLVSAVIHHGSSSFSGHYNCIGSTS---------SGSYHYFGDDRVQASNLQQVT-------NAYVVIY 207 (242)
Q Consensus 153 ----~~----~L~~vI~H~G~s~~~GHY~~~vr~~---------~~~W~~~nD~~V~~~~~~~v~-------~aYiLfY 207 (242)
+. +|-|+|+|.|++-+.+|.++++|.. +.+||.|||..|++++++++. .|.||+|
T Consensus 782 ~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 782 DYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred cccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 11 9999999999988999999999963 358999999999999999988 9999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.93 E-value=1e-05 Score=67.33 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=47.8
Q ss_pred ccCcCCCceeEEEEEEccccCceeEEEEEEEeecccccceeEEeccccccCccccCCCceeEEEEeecccCCCCcEEEEE
Q psy13202 97 QCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIG 176 (242)
Q Consensus 97 ~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~~~K~~~~v~fp~~Ldl~~~~~~~~~L~~vI~H~G~s~~~GHY~~~v 176 (242)
.|.+|+.+ ...+++.+.++|+++++|+.- +=..+.-.... ..+....+ ++.+||...- +--|+++++
T Consensus 172 pCn~C~~k-sQ~rkMvlekv~~vfmLHFVe--GLP~ndl~~ys----F~feg~~Y---~Vt~VIQY~~---~~~HFvtWi 238 (275)
T PF15499_consen 172 PCNSCNSK-SQRRKMVLEKVPPVFMLHFVE--GLPHNDLQHYS----FHFEGCLY---QVTSVIQYQA---NLNHFVTWI 238 (275)
T ss_pred CCcccCCh-HHhHhhhhhcCchhhhhhhhc--cCCccCCCccc----eeecCeeE---EEEEEEEEec---cCceeEEEE
Confidence 34444433 245567778888888887642 00000000011 11111112 7777887754 357999999
Q ss_pred ecCCCCeEEEcCCc
Q psy13202 177 STSSGSYHYFGDDR 190 (242)
Q Consensus 177 r~~~~~W~~~nD~~ 190 (242)
++++|.|..|||-+
T Consensus 239 ~~~dGsWLecDDLk 252 (275)
T PF15499_consen 239 RDSDGSWLECDDLK 252 (275)
T ss_pred EcCCCCeEeeccCC
Confidence 99999999999965
No 41
>KOG1870|consensus
Probab=97.61 E-value=0.00013 Score=71.69 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC
Q psy13202 2 RKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK 57 (242)
Q Consensus 2 ~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~ 57 (242)
..++..+|.+....+.|..+...+....+.|.++.|||.+||+.+++|.+|+++..
T Consensus 301 ~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~ 356 (842)
T KOG1870|consen 301 ADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNR 356 (842)
T ss_pred hhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhc
Confidence 35788899888778999999999999999999999999999999999999999754
No 42
>KOG3556|consensus
Probab=93.62 E-value=0.063 Score=49.26 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCCCcc----ccceeeeeeCCC---CCCHHHHHHhhcccccccCCCccccCcCCCceeEE
Q psy13202 36 RPEDSHEFLLYLIEGIHRSYLKVISG----SNNLELSLDIYQ---LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEAT 108 (242)
Q Consensus 36 ~QqDa~Efl~~ll~~l~~~~~~~~f~----S~f~~l~l~i~~---~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~ 108 (242)
+-.|+.|||.-++..+-........+ +-|+.|-++-.. ..++++.++..+....
T Consensus 455 eekdpEEFLn~l~t~i~rVEp~lkisaGqd~yfyQlFleKdekv~~p~~qqL~e~sf~sS~------------------- 515 (724)
T KOG3556|consen 455 EEKDPEEFLNGLKTLIARVEPKLKISAGQDVYFYQLFLEKDEKVGHPGFQQLSELSFPSSS------------------- 515 (724)
T ss_pred cccCHHHHHHHHHHHhcccceeeeeccCCchhhhhhhhhcccccCCchHHHHhhhhccccc-------------------
Confidence 56799999999888776542211111 134433333222 3466666554443322
Q ss_pred EEEEccccCceeEEEEEEEee---cccccceeEEec
Q psy13202 109 KQFSIEKPPIVFILLLKRFNY---LCLKISCAVQVP 141 (242)
Q Consensus 109 ~~~~i~~~P~vL~i~l~Rf~~---~~~K~~~~v~fp 141 (242)
.+..+.|..++||+.||.. ...++-..+.+|
T Consensus 516 --ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~ 549 (724)
T KOG3556|consen 516 --IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLP 549 (724)
T ss_pred --cccccCcchhheeccccCcccccchhcCCceEee
Confidence 3356789999999999972 223444444444
No 43
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=88.46 E-value=1.1 Score=35.89 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=33.4
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeeccccccceEEEEEEEeCC
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPS 212 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v~~aYiLfY~r~~~ 212 (242)
+..+-|.-.|. ||.+.+++. .+.||.+||+.+.+...... -+|+|..-+.
T Consensus 128 df~agi~~~g~----~Havfa~~t-s~gWy~iDDe~~y~~tPdp~---~VLvfvp~D~ 177 (193)
T PF05408_consen 128 DFHAGIFLKGQ----EHAVFACVT-SDGWYAIDDEDFYPWTPDPS---DVLVFVPYDQ 177 (193)
T ss_dssp GEEEEEEEEST----TEEEEEEEE-TTCEEEEETTEEEE----GG---GEEEEEESSS
T ss_pred HhhhHheecCC----cceEEEEEe-eCcEEEecCCeeeeCCCChh---heEEEcccCc
Confidence 55666666665 999999998 66699999999988755533 2355665444
No 44
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=82.09 E-value=1.3 Score=29.02 Aligned_cols=40 Identities=23% Similarity=0.437 Sum_probs=28.8
Q ss_pred CccccCcCCCceeEEEEEEc--cccCceeEEEEEEEeecccc
Q psy13202 94 NLYQCEKCGYKTEATKQFSI--EKPPIVFILLLKRFNYLCLK 133 (242)
Q Consensus 94 ~~~~C~~C~~~~~~~~~~~i--~~~P~vL~i~l~Rf~~~~~K 133 (242)
+.+.|++|+...-.++.... ..+.+++=||.++|....-|
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~itCk 44 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVITCK 44 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEEEEec
Confidence 45679999986555555444 47889999999999843333
No 45
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=72.46 E-value=7.6 Score=30.46 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=27.7
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCccee
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQA 193 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~ 193 (242)
...|+|++.+ .|++|..|- +|.||..|-..-.|
T Consensus 98 ~~~gfI~N~~-----~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 98 NEFGFICNLS-----RHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp CSSEEEEECT-----TEEEEEEEE-TTEEEEECTTTSS-
T ss_pred hceEEEeccC-----cceEEEEee-CCeeEeccCCCCCC
Confidence 8899999965 699999998 99999999865544
No 46
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=70.67 E-value=5 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.8
Q ss_pred EEecCCCCeEEEcCC
Q psy13202 175 IGSTSSGSYHYFGDD 189 (242)
Q Consensus 175 ~vr~~~~~W~~~nD~ 189 (242)
+++. ++.||.|+++
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 5565 7899999875
No 47
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=65.61 E-value=6.2 Score=26.05 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=21.6
Q ss_pred cccCcCCCceeEEEEEEc--cccCceeEEEEEEEe
Q psy13202 96 YQCEKCGYKTEATKQFSI--EKPPIVFILLLKRFN 128 (242)
Q Consensus 96 ~~C~~C~~~~~~~~~~~i--~~~P~vL~i~l~Rf~ 128 (242)
|.|++|+...-..++... ..+-+++-||.+||.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 689999976544433333 345566778888876
No 48
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=59.70 E-value=14 Score=35.13 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=45.6
Q ss_pred ceeEEEEEEEe------------ecccccceeEEeccccccCccccCCCceeEEEEee-cccC----------CCCcEEE
Q psy13202 118 IVFILLLKRFN------------YLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHH-GSSS----------FSGHYNC 174 (242)
Q Consensus 118 ~vL~i~l~Rf~------------~~~~K~~~~v~fp~~Ldl~~~~~~~~~L~~vI~H~-G~s~----------~~GHY~~ 174 (242)
-+|++.++|-. ++..-++..+++..++.+...+. +|.+.||+. |+.. -.|||+
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~ingimy---rL~SAVCYK~~d~~~d~C~~~diflkG~yt- 554 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITINGIMY---RLKSAVCYKIGDQFFDGCNGNDIFLKGYYT- 554 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeecceee---eeehhheeeccccccCCCCCCcceeceeEE-
Confidence 67999999864 22244567788888888888777 999999885 3322 128885
Q ss_pred EEecCCCCeEEEcCCc
Q psy13202 175 IGSTSSGSYHYFGDDR 190 (242)
Q Consensus 175 ~vr~~~~~W~~~nD~~ 190 (242)
.++...| ||.+|-..
T Consensus 555 IlfTe~G-pw~YDP~s 569 (666)
T PF03292_consen 555 ILFTEMG-PWMYDPLS 569 (666)
T ss_pred EEEecCC-ceeeCchh
Confidence 5555355 66666443
No 49
>KOG2935|consensus
Probab=57.89 E-value=2.1 Score=35.90 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=46.3
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceee--cccccc--------ceEEEEEEEeCCCcccCCCCCCCC
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQAS--NLQQVT--------NAYVVIYELLPSSLHHLNSSLHSS 224 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~--~~~~v~--------~aYiLfY~r~~~~~~~~~~~~~~~ 224 (242)
.-.|+|||.-. |+.+..|- +++||.+|--.--+- +...+. .+|=+|-.+-+-+....++....+
T Consensus 102 ~erafICnl~e-----HWF~iRKf-g~qWfnlnSllagPellSdtyls~FL~qlq~egySIFVVkG~lP~~eadql~~m~ 175 (315)
T KOG2935|consen 102 NERAFICNLKE-----HWFTIRKF-GKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSIFVVKGDLPDCEADQLLQMI 175 (315)
T ss_pred hhhhhhhcchh-----hhhhHhhh-cchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeEEEEecCCCCccHhhhhccc
Confidence 45688999875 99999887 999999987544332 221111 999999998777755555555555
Q ss_pred CCCC
Q psy13202 225 SPGS 228 (242)
Q Consensus 225 ~~~~ 228 (242)
+..+
T Consensus 176 ~v~e 179 (315)
T KOG2935|consen 176 SVSE 179 (315)
T ss_pred cccc
Confidence 4444
No 50
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=57.39 E-value=55 Score=24.89 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=43.1
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcC-------Ccceeecccccc-------ceEEEEEEEeCCCcccCCCC
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGD-------DRVQASNLQQVT-------NAYVVIYELLPSSLHHLNSS 220 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD-------~~V~~~~~~~v~-------~aYiLfY~r~~~~~~~~~~~ 220 (242)
+|.|||-. +++|++++++++++|.+.-. -+|+.++...+. .+=-.-+.|+....+.+++.
T Consensus 37 rlqGiVg~------~~~~~gwl~~p~g~W~Rv~~g~~L~~gWrV~~i~~~~ltL~~~~~C~P~qw~w~~kG~~~~~~d~~ 110 (132)
T PF10748_consen 37 RLQGIVGQ------GDRWIGWLQDPQGKWLRVRQGQVLPPGWRVTQITARQLTLQTGDGCEPQQWRWQRKGTKNDAMDSP 110 (132)
T ss_pred eEccEECC------CCcEEEEEECCCCCeEEeccCCCCCCCcEEEEEcCCeEEEccCCCCCchheEeeecCccccccccc
Confidence 88888643 46899999999999997644 356677666665 44455556666666656644
Q ss_pred CCCC
Q psy13202 221 LHSS 224 (242)
Q Consensus 221 ~~~~ 224 (242)
...+
T Consensus 111 ~~~~ 114 (132)
T PF10748_consen 111 VADA 114 (132)
T ss_pred cccc
Confidence 4433
No 51
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=51.05 E-value=38 Score=24.79 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=29.3
Q ss_pred EEEeecccCCCCcEEEEEecCCCCeEEEcCC--cceeecccccc---ceEEEEEEEe
Q psy13202 159 AVIHHGSSSFSGHYNCIGSTSSGSYHYFGDD--RVQASNLQQVT---NAYVVIYELL 210 (242)
Q Consensus 159 vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~--~V~~~~~~~v~---~aYiLfY~r~ 210 (242)
+|.|.+ .|||+...+. ++..+.+-|- ....++.++.. ++++|+-++.
T Consensus 78 ~I~~~~----~~h~vVi~~~-~~~~~~i~dP~~g~~~~~~~~f~~~w~G~~l~~~~~ 129 (131)
T PF03412_consen 78 AIAHLK----DGHFVVIYKI-DDGRVLIYDPKKGKIKLSKEEFEEIWTGEVLLIKPS 129 (131)
T ss_dssp EEEEEC----CCEEEEEEEE-CCCEEEECCTTTCEEEEEHHHHHHHEEEEEEEEEE-
T ss_pred EEEEec----CcceEEEEeE-cCcEEEEEeCCCCeEEEeHHHHHhhCCCEEEEEEeC
Confidence 555654 4999999988 4555555553 23344555544 8888887764
No 52
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=50.95 E-value=32 Score=24.95 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=25.9
Q ss_pred EEEeecccCCCCcEEEEEecCCCCeEEEcCCc-ceeecccccc---ceEEEE
Q psy13202 159 AVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDR-VQASNLQQVT---NAYVVI 206 (242)
Q Consensus 159 vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~-V~~~~~~~v~---~aYiLf 206 (242)
+|.+.++ |||+...+..+++|+.+|-.. ...++.++.. ++++++
T Consensus 77 ~I~~~~~----g~~~Vl~~~~~~~~~i~dp~~~~~~~s~~el~~~~~g~vi~ 124 (125)
T cd02420 77 AIVFWNF----NHFLVVEGFDKRKVFLNDPATGRRTVSLEEFDQSFTGVVLT 124 (125)
T ss_pred EEEEeCC----CEEEEEEEEeCCEEEEECCCcCceeecHHHHHhhCCceEEe
Confidence 4555543 999999998666666666432 2234444433 556554
No 53
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=47.41 E-value=20 Score=36.35 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.5
Q ss_pred ccccCccccCCCceeEEEEeecccCCCCcEEEEEecCCCCeEEEcC
Q psy13202 143 YLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGD 188 (242)
Q Consensus 143 ~Ldl~~~~~~~~~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD 188 (242)
.||-..|+. -|.|| |...+||||+..+|.+++++|+||-
T Consensus 43 ~l~~qgfmp---vltgv----~p~~~sghwimlikg~gn~y~lfdp 81 (1439)
T PF12252_consen 43 ALNQQGFMP---VLTGV----SPRQDSGHWIMLIKGQGNQYYLFDP 81 (1439)
T ss_pred hHhccCCce---eecCc----CCCCcCceeEEEEEcCCCceEEecc
Confidence 344455544 66666 6667889999999998889999984
No 54
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=38.35 E-value=1.2e+02 Score=22.05 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=30.0
Q ss_pred EEEeecccCCCCcEEEEEecCCCCeEEEcCC--cceeecccccc---ceEEEEEEE
Q psy13202 159 AVIHHGSSSFSGHYNCIGSTSSGSYHYFGDD--RVQASNLQQVT---NAYVVIYEL 209 (242)
Q Consensus 159 vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~--~V~~~~~~~v~---~aYiLfY~r 209 (242)
+|.+.......|||+...+. ++.++.+.|- ....++.++.. .+++++-++
T Consensus 79 ~I~~~~~~~~~~~~~Vl~~~-~~~~~~i~dp~~~~~~~~~~ef~~~w~g~~l~~~~ 133 (136)
T cd02418 79 FIAHVIKEWKLNHYVVVYKI-KKKKILIADPAVGITKISKEEFEKEWTGVALFLEP 133 (136)
T ss_pred EEEEEccCCCCCeEEEEEEE-cCCEEEEECCCCCCEEeeHHHHHhhCeEEEEEEec
Confidence 55554333466999999987 5556666553 23344555544 667666554
No 55
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=38.21 E-value=43 Score=29.47 Aligned_cols=38 Identities=13% Similarity=0.005 Sum_probs=22.9
Q ss_pred cChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy13202 16 IIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRS 54 (242)
Q Consensus 16 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~ 54 (242)
=+|.+|...+-.. .....|+--||+++|..|++.+..+
T Consensus 143 G~~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~~ 180 (320)
T PF08715_consen 143 GDPAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADLD 180 (320)
T ss_dssp T--HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-TT
T ss_pred CChHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhcccc
Confidence 3577888777654 4567788999999999999877754
No 56
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=37.06 E-value=1.3e+02 Score=22.60 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=20.3
Q ss_pred ceeEEEEeecccCCCCcEEEEEec
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGST 178 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~ 178 (242)
+.+|+|+-......+-||+|||=.
T Consensus 84 dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 84 DHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred ceEEEEeccCCCCCcceEEEEEEE
Confidence 999999999875566799999964
No 57
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=36.59 E-value=18 Score=18.97 Aligned_cols=10 Identities=30% Similarity=1.178 Sum_probs=8.0
Q ss_pred CccccCcCCC
Q psy13202 94 NLYQCEKCGY 103 (242)
Q Consensus 94 ~~~~C~~C~~ 103 (242)
..|.|++||.
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4599999984
No 58
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=36.52 E-value=67 Score=19.01 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=20.1
Q ss_pred cccCcCCCcee---EEEEEE-----ccccCceeEEEEEEEe
Q psy13202 96 YQCEKCGYKTE---ATKQFS-----IEKPPIVFILLLKRFN 128 (242)
Q Consensus 96 ~~C~~C~~~~~---~~~~~~-----i~~~P~vL~i~l~Rf~ 128 (242)
..|+.||.... ..+... +..-|-+|.+...||.
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~ 43 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYR 43 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEE
Confidence 57999986531 122333 3455667888777774
No 59
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=36.15 E-value=28 Score=25.22 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCcEEEEEecC--CCCeEE--EcCCcceeecc--cccc--ceEEEEEEEeC
Q psy13202 169 SGHYNCIGSTS--SGSYHY--FGDDRVQASNL--QQVT--NAYVVIYELLP 211 (242)
Q Consensus 169 ~GHY~~~vr~~--~~~W~~--~nD~~V~~~~~--~~v~--~aYiLfY~r~~ 211 (242)
-|.|++++|.. ++.||. .|+..-..++. .-+. ..|..-.-+..
T Consensus 13 pGeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~ 63 (103)
T PF14509_consen 13 PGEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDG 63 (103)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-
T ss_pred CceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeC
Confidence 59999999997 689995 55543333333 3222 35655444433
No 60
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=35.81 E-value=67 Score=23.11 Aligned_cols=37 Identities=8% Similarity=0.265 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCeEEEcCCcc--eeecccccc---ceEEEEE
Q psy13202 170 GHYNCIGSTSSGSYHYFGDDRV--QASNLQQVT---NAYVVIY 207 (242)
Q Consensus 170 GHY~~~vr~~~~~W~~~nD~~V--~~~~~~~v~---~aYiLfY 207 (242)
|||+...+..++ .+.+.|... ..++.++.. ++++++|
T Consensus 85 ~~~~Vl~~~~~~-~~~i~dp~~~~~~~~~~~l~~~~~g~~~~~ 126 (126)
T cd02425 85 NHFVVLEKIKKN-KVTIVDPAIGRIKISIDEFLENFSGYILTF 126 (126)
T ss_pred CcEEEEEEEECC-EEEEEcCCCCCEEECHHHHHhhCCcEEEeC
Confidence 899999987444 444444322 234444433 6666653
No 61
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=35.09 E-value=96 Score=22.34 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCeEEEc-CCcceeecccccc---ceEEEEE
Q psy13202 170 GHYNCIGSTSSGSYHYFG-DDRVQASNLQQVT---NAYVVIY 207 (242)
Q Consensus 170 GHY~~~vr~~~~~W~~~n-D~~V~~~~~~~v~---~aYiLfY 207 (242)
|||+...+..++.+..+| +.....++.++.. ++++++-
T Consensus 84 g~~~Vl~~~~~~~~~i~dp~~~~~~~~~~el~~~~~g~~i~~ 125 (127)
T cd02419 84 NHFVVLKKVSRRRIVIHDPALGKRKLSLEEASRHFTGVALEL 125 (127)
T ss_pred CEEEEEEEEcCCEEEEECCccCCEEEcHHHHHhhCCcEEEEE
Confidence 899999997455444444 2222345555544 6666653
No 62
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=34.89 E-value=51 Score=20.91 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=17.1
Q ss_pred CCCCcEEEEEecCCCCeEEEc
Q psy13202 167 SFSGHYNCIGSTSSGSYHYFG 187 (242)
Q Consensus 167 ~~~GHY~~~vr~~~~~W~~~n 187 (242)
....|.+.-+.. +++|+.+|
T Consensus 46 ~~~~H~W~ev~~-~~~W~~~D 65 (68)
T smart00460 46 IWEAHAWAEVYL-EGGWVPVD 65 (68)
T ss_pred CCCcEEEEEEEE-CCCeEEEe
Confidence 467899999998 68999987
No 63
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=31.12 E-value=24 Score=18.45 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=10.0
Q ss_pred CCCccccCcCCCc
Q psy13202 92 RDNLYQCEKCGYK 104 (242)
Q Consensus 92 ~~~~~~C~~C~~~ 104 (242)
++..|.|+.|++.
T Consensus 11 ~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 11 GEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSEEESSSSEE
T ss_pred CCCCCCCCCCcCe
Confidence 4567999999863
No 64
>KOG1887|consensus
Probab=29.40 E-value=19 Score=35.39 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=59.0
Q ss_pred cCCCceeEEEEEEccccCceeEEEEEEEeecccccc--eeEEeccccccCcccc-C--CC---ceeEEEEeecccCCCCc
Q psy13202 100 KCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKIS--CAVQVPLYLEFGKFMH-C--RR---NLVSAVIHHGSSSFSGH 171 (242)
Q Consensus 100 ~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~~~K~~--~~v~fp~~Ldl~~~~~-~--~~---~L~~vI~H~G~s~~~GH 171 (242)
+||+.. -....|.+.|++++|.+..=.....|.. +...+..++|++.... + |. +|+++|.-.+. .++
T Consensus 667 GCgk~n--~v~h~is~~P~vftIvlewEk~ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~ 741 (806)
T KOG1887|consen 667 GCGKAN--LVHHILSPCPPVFTIVLEWEKSETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEE 741 (806)
T ss_pred CCcchh--hhhhhcCCCCCeeEeeeehhcccchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cce
Confidence 465432 2234567899999997764222111111 1112233455443331 1 22 99999865532 689
Q ss_pred EEEEEecCCCCeE--EEcCCcceee-cccccc--------ceEEEEEEE
Q psy13202 172 YNCIGSTSSGSYH--YFGDDRVQAS-NLQQVT--------NAYVVIYEL 209 (242)
Q Consensus 172 Y~~~vr~~~~~W~--~~nD~~V~~~-~~~~v~--------~aYiLfY~r 209 (242)
|.|++.. .++|+ ..+|..+..+ ++..|. .+=||||+.
T Consensus 742 ~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~ 789 (806)
T KOG1887|consen 742 YICFAYE-PNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEA 789 (806)
T ss_pred EEEeecc-CCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHH
Confidence 9999997 77888 8888766665 333333 455555554
No 65
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=25.36 E-value=73 Score=23.69 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=22.9
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeeccc
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQ 197 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~ 197 (242)
-+.|||+..-. - +|.++|.|+.|||.-..-++.+
T Consensus 57 V~~AViVRtkk--------~-~rR~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKK--------E-VRRPDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCC--------c-eEcCCCCEEEeCCceEEEECCC
Confidence 56677776543 1 2335999999999866555544
No 66
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=23.15 E-value=40 Score=21.85 Aligned_cols=12 Identities=50% Similarity=1.373 Sum_probs=8.7
Q ss_pred CCccccCcCCCc
Q psy13202 93 DNLYQCEKCGYK 104 (242)
Q Consensus 93 ~~~~~C~~C~~~ 104 (242)
.+.|.|++||-.
T Consensus 48 g~~Y~Cp~CGF~ 59 (61)
T COG2888 48 GNPYRCPKCGFE 59 (61)
T ss_pred CCceECCCcCcc
Confidence 366889998743
No 67
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=22.45 E-value=85 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=14.0
Q ss_pred CCCCcEEEEEecCCCCeEEEcCC
Q psy13202 167 SFSGHYNCIGSTSSGSYHYFGDD 189 (242)
Q Consensus 167 ~~~GHY~~~vr~~~~~W~~~nD~ 189 (242)
...|||++.+--.++.++.++|-
T Consensus 121 ~~~~H~vvi~Gy~~~~~~~v~DP 143 (144)
T PF13529_consen 121 TYGGHYVVIIGYDEDGYVYVNDP 143 (144)
T ss_dssp -TTEEEEEEEEE-SSE-EEEE-T
T ss_pred CcCCEEEEEEEEeCCCEEEEeCC
Confidence 56899999887644346777773
No 68
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=21.91 E-value=69 Score=22.54 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=17.4
Q ss_pred CCCCcEEEEEecCCCCeEEEc
Q psy13202 167 SFSGHYNCIGSTSSGSYHYFG 187 (242)
Q Consensus 167 ~~~GHY~~~vr~~~~~W~~~n 187 (242)
...+|.++-+..++++|+.+|
T Consensus 92 ~~~~H~w~ev~~~~~~W~~~D 112 (113)
T PF01841_consen 92 GNDNHAWVEVYLPGGGWIPLD 112 (113)
T ss_dssp SEEEEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEEEEcCCcEEEcC
Confidence 455799999998788899886
No 69
>KOG0402|consensus
Probab=21.32 E-value=24 Score=24.43 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=12.7
Q ss_pred cccCCCccccCcCCCcee
Q psy13202 89 YLVRDNLYQCEKCGYKTE 106 (242)
Q Consensus 89 ~i~~~~~~~C~~C~~~~~ 106 (242)
++..-.+|.|+.||+.+-
T Consensus 30 ei~Qhaky~CsfCGK~~v 47 (92)
T KOG0402|consen 30 EIQQHAKYTCSFCGKKTV 47 (92)
T ss_pred HHHHhhhhhhhhcchhhh
Confidence 444456699999998653
No 70
>PF14353 CpXC: CpXC protein
Probab=21.32 E-value=99 Score=22.90 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=9.6
Q ss_pred ccccCcCCCcee
Q psy13202 95 LYQCEKCGYKTE 106 (242)
Q Consensus 95 ~~~C~~C~~~~~ 106 (242)
.+.|++||....
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 389999998654
No 71
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=20.94 E-value=57 Score=23.71 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.7
Q ss_pred CCCCcEEEEEecCC
Q psy13202 167 SFSGHYNCIGSTSS 180 (242)
Q Consensus 167 ~~~GHY~~~vr~~~ 180 (242)
.++|+|+|.+|+.+
T Consensus 80 eDSG~Y~C~~rN~t 93 (104)
T cd05896 80 QDSGLYTCVLRNST 93 (104)
T ss_pred hhCeEEEEEECCCC
Confidence 57899999999743
No 72
>PHA02131 hypothetical protein
Probab=20.38 E-value=1e+02 Score=19.68 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=19.3
Q ss_pred CCCCcEEEEEecCCCCeEEEcCCcceeeccc
Q psy13202 167 SFSGHYNCIGSTSSGSYHYFGDDRVQASNLQ 197 (242)
Q Consensus 167 ~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~ 197 (242)
+-.|||.--+. -|+.|-|..|......
T Consensus 20 mirgh~~~g~~----c~imfk~~~v~dctfk 46 (70)
T PHA02131 20 MIRGHYRFGIS----CWIMFKNDQVIDCTFK 46 (70)
T ss_pred EeccceecceE----EEEEEcCCCEEEeeec
Confidence 44588865444 3999999998876543
Done!