Query psy13202
Match_columns 242
No_of_seqs 194 out of 1277
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:47:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.6E-49 5.6E-54 351.8 20.1 214 1-215 62-363 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.1E-48 7.1E-53 348.4 16.8 209 2-211 117-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 6.9E-48 2.3E-52 337.7 19.1 213 1-214 61-346 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.1E-47 3.6E-52 337.4 15.3 211 1-213 54-353 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 4.7E-45 1.6E-49 322.0 17.5 212 1-217 53-321 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 5.9E-45 2E-49 326.0 16.4 208 1-214 66-397 (404)
7 1vjv_A Ubiquitin carboxyl-term 100.0 1.9E-44 6.4E-49 324.3 17.2 206 1-211 80-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 1.9E-43 6.5E-48 322.9 16.9 209 1-211 192-474 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 6E-43 2.1E-47 323.1 17.8 215 1-220 222-493 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 2.1E-41 7.1E-46 327.0 18.5 147 1-150 396-622 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.7 1E-18 3.4E-23 151.7 4.9 157 2-188 60-308 (374)
12 3mp2_A Non-structural protein 76.9 2.7 9.1E-05 33.5 4.2 36 157-196 161-196 (211)
13 3o65_A Putative ataxin-3-like 72.2 2.2 7.5E-05 33.4 2.6 55 155-215 109-173 (191)
14 1qmy_A Protease, leader protea 61.3 13 0.00044 27.6 4.7 38 155-197 108-145 (167)
15 2fe8_A PP1AB, ORF1AB, replicas 51.1 13 0.00044 31.4 3.7 36 158-196 261-296 (315)
16 2ww6_A Fibritin, T4 fibritin; 43.2 9.2 0.00032 19.6 1.0 14 174-188 12-25 (27)
17 3b79_A Toxin secretion ATP-bin 38.3 45 0.0015 23.2 4.6 47 159-209 72-126 (129)
18 3k8u_A Putative ABC transporte 30.4 43 0.0015 24.4 3.5 56 159-214 84-145 (156)
19 1flt_X FLT-1, VGR1, FMS-like t 29.0 35 0.0012 23.2 2.5 30 157-187 59-88 (95)
20 2kvh_A Zinc finger and BTB dom 25.1 26 0.00089 16.3 1.0 10 95-104 3-12 (27)
21 3c5t_B Exendin-4, exenatide; l 24.5 32 0.0011 18.4 1.2 12 39-50 10-21 (31)
22 3aqy_A Beta-1,3-glucan-binding 23.8 1.6E+02 0.0055 20.3 5.2 24 166-189 42-66 (106)
23 2kvf_A Zinc finger and BTB dom 23.5 30 0.001 16.1 1.0 10 95-104 3-12 (28)
24 1p7a_A BF3, BKLF, kruppel-like 23.1 34 0.0012 17.4 1.3 12 93-104 9-20 (37)
25 1znf_A 31ST zinc finger from X 23.0 31 0.0011 15.8 1.0 9 96-104 2-10 (27)
26 1fv5_A First zinc finger of U- 22.1 29 0.001 18.8 0.8 13 92-104 5-17 (36)
27 2elm_A Zinc finger protein 406 21.7 32 0.0011 17.7 0.9 12 93-104 7-18 (37)
28 2kvg_A Zinc finger and BTB dom 21.3 26 0.0009 16.4 0.5 9 95-103 3-11 (27)
29 3ie4_A GRAM-negative binding p 20.4 1.5E+02 0.0051 20.6 4.4 24 167-190 42-66 (107)
30 2m0d_A Zinc finger and BTB dom 20.2 37 0.0013 15.9 0.9 10 95-104 3-12 (30)
31 1srk_A Zinc finger protein ZFP 20.2 40 0.0014 16.8 1.1 12 93-104 5-16 (35)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=351.80 Aligned_cols=214 Identities=24% Similarity=0.434 Sum_probs=190.9
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC----------------------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV---------------------- 58 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------- 58 (242)
|+.|+..||.+...+++|..|++.+++..+.|.+++||||||||.+|||.|++++...
T Consensus 62 l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~ 141 (367)
T 2y6e_A 62 YAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKE 141 (367)
T ss_dssp HHHHHHHHTSSSCSEECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHH
Confidence 4678999999888999999999999999999999999999999999999999986421
Q ss_pred ---------------Ccc---------------c----cceeeeeeCCCC-------------------CCHHHHHHhhc
Q psy13202 59 ---------------ISG---------------S----NNLELSLDIYQL-------------------SSLDEALGQFF 85 (242)
Q Consensus 59 ---------------~f~---------------S----~f~~l~l~i~~~-------------------~sl~~~l~~~~ 85 (242)
.|+ | +|++|+|+||.. .+|++||+.|+
T Consensus 142 ~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~ 221 (367)
T 2y6e_A 142 AWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFT 221 (367)
T ss_dssp HHHHHHHHCCSHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHT
T ss_pred HHHHHHHhcCCccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhc
Confidence 143 2 899999999852 58999999999
Q ss_pred ccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec---ccccceeEEecc-ccccCccccCCC------c
Q psy13202 86 AKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL---CLKISCAVQVPL-YLEFGKFMHCRR------N 155 (242)
Q Consensus 86 ~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~---~~K~~~~v~fp~-~Ldl~~~~~~~~------~ 155 (242)
.+|.++++++|.|++|+.++.+.|+..|.++|++|+|||+||.+. ..|+.+.|.||. .|||.+++..+. +
T Consensus 222 ~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~ 301 (367)
T 2y6e_A 222 TMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYD 301 (367)
T ss_dssp SCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEE
T ss_pred ccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEE
Confidence 999999999999999999999999999999999999999999953 489999999996 799999987643 9
Q ss_pred eeEEEEeecccCCCCcEEEEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeCCCcc
Q psy13202 156 LVSAVIHHGSSSFSGHYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLPSSLH 215 (242)
Q Consensus 156 L~~vI~H~G~s~~~GHY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~~~~~ 215 (242)
|+|||+|.|. .++|||+||+|.. +++||+|||+.|++++.+++. .||||||+|++...+
T Consensus 302 L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~ 363 (367)
T 2y6e_A 302 LIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY 363 (367)
T ss_dssp EEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred EEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence 9999999996 8999999999986 789999999999999999998 999999999886543
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.1e-48 Score=348.38 Aligned_cols=209 Identities=27% Similarity=0.429 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC-----------------------
Q psy13202 2 RKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV----------------------- 58 (242)
Q Consensus 2 ~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------------- 58 (242)
+.++..+|.+...+++|..|++.++...+.|.+++||||||||.+|||.|++++...
T Consensus 117 ~~l~~~l~~~~~~~i~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~ 196 (396)
T 2gfo_A 117 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHA 196 (396)
T ss_dssp HHHHHHHHHSCEEEECCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCceECHHHHHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHH
Confidence 568889999888899999999999999999999999999999999999999987532
Q ss_pred --------------Ccc---------------c----cceeeeeeCCC--CCCHHHHHHhhcccccccCCCccccCcCCC
Q psy13202 59 --------------ISG---------------S----NNLELSLDIYQ--LSSLDEALGQFFAKEYLVRDNLYQCEKCGY 103 (242)
Q Consensus 59 --------------~f~---------------S----~f~~l~l~i~~--~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~ 103 (242)
.|+ | +|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|+.
T Consensus 197 w~~~~~~~~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~ 276 (396)
T 2gfo_A 197 WQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 276 (396)
T ss_dssp HHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTE
T ss_pred HHHhhhccCCccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCccc
Confidence 143 2 89999999997 469999999999999999999999999999
Q ss_pred ceeEEEEEEccccCceeEEEEEEEeec---ccccceeEEec-cccccCccccCCC------ceeEEEEeecccCCCCcEE
Q psy13202 104 KTEATKQFSIEKPPIVFILLLKRFNYL---CLKISCAVQVP-LYLEFGKFMHCRR------NLVSAVIHHGSSSFSGHYN 173 (242)
Q Consensus 104 ~~~~~~~~~i~~~P~vL~i~l~Rf~~~---~~K~~~~v~fp-~~Ldl~~~~~~~~------~L~~vI~H~G~s~~~GHY~ 173 (242)
.+.+.++..|.++|++|+|||+||.+. ..|+.+.|.|| +.|||.+++..+. +|+|||+|.| ++++|||+
T Consensus 277 ~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~ 355 (396)
T 2gfo_A 277 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYT 355 (396)
T ss_dssp EECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES-CTTTCEEE
T ss_pred ccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC-CCCCCceE
Confidence 999999999999999999999999954 37999999999 5799999987642 9999999999 69999999
Q ss_pred EEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeC
Q psy13202 174 CIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLP 211 (242)
Q Consensus 174 ~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~ 211 (242)
||+|.. +++||+|||+.|++++.+++. +||||||+|++
T Consensus 356 a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 356 AYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred EEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 999986 689999999999999999988 99999999974
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=6.9e-48 Score=337.74 Aligned_cols=213 Identities=27% Similarity=0.466 Sum_probs=190.5
Q ss_pred CHHHHHHHH-hcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC---------------------
Q psy13202 1 MRKTLAACQ-AESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV--------------------- 58 (242)
Q Consensus 1 l~~ll~~~~-~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------- 58 (242)
|+.|+..+| .+...+++|..|++.++...+.|.+++|||||||+.+||+.|++++...
T Consensus 61 l~~l~~~l~~~~~~~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
T 3nhe_A 61 FAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGR 140 (348)
T ss_dssp HHHHHHHHTTCCTTCEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 467888998 5677899999999999999999999999999999999999999987431
Q ss_pred ----------------Ccc---------------c----cceeeeeeCCCC----CCHHHHHHhhcccccccCCCccccC
Q psy13202 59 ----------------ISG---------------S----NNLELSLDIYQL----SSLDEALGQFFAKEYLVRDNLYQCE 99 (242)
Q Consensus 59 ----------------~f~---------------S----~f~~l~l~i~~~----~sl~~~l~~~~~~e~i~~~~~~~C~ 99 (242)
.|+ | +|++|+|+++.. .+|+++|+.|+.+|.++++++|.|+
T Consensus 141 ~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~ 220 (348)
T 3nhe_A 141 QMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCC 220 (348)
T ss_dssp HHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEET
T ss_pred HHHHHHHhhcCCccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECC
Confidence 143 2 899999999974 4999999999999999999999999
Q ss_pred cCCCceeEEEEEEccccCceeEEEEEEEee---cccccceeEEec-cccccCccccCCC-----ceeEEEEeecccCCCC
Q psy13202 100 KCGYKTEATKQFSIEKPPIVFILLLKRFNY---LCLKISCAVQVP-LYLEFGKFMHCRR-----NLVSAVIHHGSSSFSG 170 (242)
Q Consensus 100 ~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~---~~~K~~~~v~fp-~~Ldl~~~~~~~~-----~L~~vI~H~G~s~~~G 170 (242)
+|+.++.+.++..|.++|++|+|||+||.+ ...|+.+.|.|| ..|||.+++.... +|+|||+|.| +..+|
T Consensus 221 ~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~~~~~Y~L~avv~H~G-~~~~G 299 (348)
T 3nhe_A 221 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSG-TTMGG 299 (348)
T ss_dssp TTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTCCCCEEEEEEEEEEEE-CSSCE
T ss_pred CCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCCCCCcEEEEEEEEccC-CCCCc
Confidence 999999999999999999999999999983 458999999999 5799999986543 9999999999 58999
Q ss_pred cEEEEEecC-CCCeEEEcCCcceeecccccc--ceEEEEEEEeCCCc
Q psy13202 171 HYNCIGSTS-SGSYHYFGDDRVQASNLQQVT--NAYVVIYELLPSSL 214 (242)
Q Consensus 171 HY~~~vr~~-~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~~~~ 214 (242)
||+||+|.+ +++||+|||+.|++++.+++. +||||||+|++.+.
T Consensus 300 HY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 300 HYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 346 (348)
T ss_dssp EEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC---
T ss_pred ccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCCC
Confidence 999999985 789999999999999999998 99999999987654
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.1e-47 Score=337.40 Aligned_cols=211 Identities=27% Similarity=0.437 Sum_probs=185.4
Q ss_pred CHHHHHHHHhcCC-CccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCC---------------------
Q psy13202 1 MRKTLAACQAESG-SAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV--------------------- 58 (242)
Q Consensus 1 l~~ll~~~~~~~~-~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------- 58 (242)
|+.++..||.+.. .+++|..|+.++++..+.|.+++||||||||.+||+.|++++...
T Consensus 54 l~~l~~~l~~~~~~~~v~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~ 133 (355)
T 3i3t_A 54 FADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGG 133 (355)
T ss_dssp HHHHHHHTSSCSSCCCBCCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC---------------------
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCcccccc
Confidence 3577888887654 789999999999999999999999999999999999999987431
Q ss_pred -------------------------------Ccc---------------c----cceeeeeeCCCC------CCHHHHHH
Q psy13202 59 -------------------------------ISG---------------S----NNLELSLDIYQL------SSLDEALG 82 (242)
Q Consensus 59 -------------------------------~f~---------------S----~f~~l~l~i~~~------~sl~~~l~ 82 (242)
.|+ | +|++|+|+++.. .+|+++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~ 213 (355)
T 3i3t_A 134 ALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFN 213 (355)
T ss_dssp -------CCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHH
Confidence 133 1 899999999863 49999999
Q ss_pred hhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee---cccccceeEEec-cccccCccccCCC----
Q psy13202 83 QFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY---LCLKISCAVQVP-LYLEFGKFMHCRR---- 154 (242)
Q Consensus 83 ~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~---~~~K~~~~v~fp-~~Ldl~~~~~~~~---- 154 (242)
.|+.+|.+++.|+|.|++|+.++.+.++..|.++|++|+|||+||.+ ...|+...|.|| +.||+.+++..+.
T Consensus 214 ~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~~~~~ 293 (355)
T 3i3t_A 214 LFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPV 293 (355)
T ss_dssp HHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC----CCE
T ss_pred HhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999994 347999999999 6699999876543
Q ss_pred -ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecccccc--ceEEEEEEEeCCC
Q psy13202 155 -NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVT--NAYVVIYELLPSS 213 (242)
Q Consensus 155 -~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~~~ 213 (242)
+|+|||+|.| +.++|||+||+|. ++.||+|||+.|++++.++|. +||||||+|++.+
T Consensus 294 Y~L~avv~H~G-~~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 294 YQLYALCNHSG-SVHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred eEEEEEEEecC-CCCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 9999999999 5999999999998 677999999999999999987 9999999998764
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=4.7e-45 Score=321.97 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=183.7
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------cc-----------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------SG----------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f~----------- 61 (242)
|+++|..|+.+. .+++|..|+..+. .+.|.++.|||||||+.+||+.|++++.... |+
T Consensus 53 l~~lf~~l~~~~-~~~~~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~ 129 (353)
T 1nb8_A 53 LQRVFYELQHSD-KPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKE 129 (353)
T ss_dssp HHHHHHHHHHCS-SCBCCHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESS
T ss_pred HHHHHHHHhhcC-CCCCCHHHHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCCCccchhhhhceeEEEEEEEecc
Confidence 467888888765 5899999998875 3678999999999999999999999875421 43
Q ss_pred ----c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee----
Q psy13202 62 ----S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY---- 129 (242)
Q Consensus 62 ----S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~---- 129 (242)
| +|++|+|+|++..++.++|..|+.+|.++++++|.|+.|+ .+.+.++..|.++|++|+|||+||.+
T Consensus 130 C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 208 (353)
T 1nb8_A 130 VDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQT 208 (353)
T ss_dssp SCCEEEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC-----
T ss_pred CCCeeceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEeccc
Confidence 2 8999999999999999999999999999999999999996 57799999999999999999999984
Q ss_pred -cccccceeEEeccccccCccccCC-----C--ceeEEEEeecccCCCCcEEEEEec-CCCCeEEEcCCcceeecccccc
Q psy13202 130 -LCLKISCAVQVPLYLEFGKFMHCR-----R--NLVSAVIHHGSSSFSGHYNCIGST-SSGSYHYFGDDRVQASNLQQVT 200 (242)
Q Consensus 130 -~~~K~~~~v~fp~~Ldl~~~~~~~-----~--~L~~vI~H~G~s~~~GHY~~~vr~-~~~~W~~~nD~~V~~~~~~~v~ 200 (242)
...|+.+.|.||+.|||.+++... . +|+|||+|.|. .++|||+||+|. .+++||+|||+.|++++.+++.
T Consensus 209 ~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~ 287 (353)
T 1nb8_A 209 DQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAI 287 (353)
T ss_dssp ---CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHT
T ss_pred CceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHH
Confidence 347999999999999999988652 1 99999999996 899999999996 4789999999999999987752
Q ss_pred -----------------ceEEEEEEEeCCCcccC
Q psy13202 201 -----------------NAYVVIYELLPSSLHHL 217 (242)
Q Consensus 201 -----------------~aYiLfY~r~~~~~~~~ 217 (242)
+||||||+|.+.....+
T Consensus 288 ~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~~~~ 321 (353)
T 1nb8_A 288 EHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVL 321 (353)
T ss_dssp GGGSCCC-------CCEEEEEEEEEETTTHHHHT
T ss_pred HHhcCCCccccccCcCCeEEEEEEEECchhhhhh
Confidence 69999999988755433
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=5.9e-45 Score=326.01 Aligned_cols=208 Identities=24% Similarity=0.323 Sum_probs=180.5
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCC------CCCCCcHHHHHHHHHHHHHHhhcCC----------------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFE------YYRPEDSHEFLLYLIEGIHRSYLKV---------------- 58 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~------~~~QqDa~Efl~~ll~~l~~~~~~~---------------- 58 (242)
|+.||..|+.+. .+++|..|++.+++..+.|. ++.||||||||.+||+.|++++...
T Consensus 66 l~~lf~~l~~~~-~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~ 144 (404)
T 2ayn_A 66 LRDLFDSMDKTS-SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAA 144 (404)
T ss_dssp HHHHHHHHHHHC-SEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------
T ss_pred HHHHHHHHhcCC-CcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhh
Confidence 578999999876 89999999999999998887 5899999999999999999987531
Q ss_pred -----------Ccc---------------c------cceeeeeeCCCC-CCHHHHHHhhcccccccCCCccccCcCCCce
Q psy13202 59 -----------ISG---------------S------NNLELSLDIYQL-SSLDEALGQFFAKEYLVRDNLYQCEKCGYKT 105 (242)
Q Consensus 59 -----------~f~---------------S------~f~~l~l~i~~~-~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~ 105 (242)
.|+ | +|++|+|+|+.. .+|+++|+.++. |.+. +.|++|+..+
T Consensus 145 ~~~~~~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~ 219 (404)
T 2ayn_A 145 TPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNA 219 (404)
T ss_dssp -----CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEEC
T ss_pred hccccCchhhhhccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCcc
Confidence 144 1 899999999975 689999999987 4444 7999999999
Q ss_pred eEEEEEEccccCceeEEEEEEEeec-----ccccceeEEeccccccCccccC----------------------------
Q psy13202 106 EATKQFSIEKPPIVFILLLKRFNYL-----CLKISCAVQVPLYLEFGKFMHC---------------------------- 152 (242)
Q Consensus 106 ~~~~~~~i~~~P~vL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~---------------------------- 152 (242)
.+.++..|.++|+||+|||+||.+. ..|+.+.|.||..|||.+|+..
T Consensus 220 ~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (404)
T 2ayn_A 220 LYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTS 299 (404)
T ss_dssp CEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------
T ss_pred ceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhc
Confidence 9999999999999999999999843 4899999999999999887642
Q ss_pred -------------------------CC--ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecccccc--c--
Q psy13202 153 -------------------------RR--NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVT--N-- 201 (242)
Q Consensus 153 -------------------------~~--~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v~--~-- 201 (242)
+. +|+|||+|.|.++++|||+||+|..+++||+|||+.|++++.++|. .
T Consensus 300 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g 379 (404)
T 2ayn_A 300 DKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGG 379 (404)
T ss_dssp ------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSS
T ss_pred cccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCC
Confidence 11 9999999999779999999999987889999999999999999887 4
Q ss_pred -----eEEEEEEEeCCCc
Q psy13202 202 -----AYVVIYELLPSSL 214 (242)
Q Consensus 202 -----aYiLfY~r~~~~~ 214 (242)
||||||+|++...
T Consensus 380 ~~~~~aYiLfY~r~~~~~ 397 (404)
T 2ayn_A 380 GDWHIAYVLLYGPRRVEI 397 (404)
T ss_dssp SSSCEEEEEEEECC----
T ss_pred CCCceEEEEEEEecCCCC
Confidence 9999999988754
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.9e-44 Score=324.26 Aligned_cols=206 Identities=19% Similarity=0.322 Sum_probs=174.6
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCC-------CCCCCcHHHHHHHHHHHHHHhhc----CCCcc--------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFE-------YYRPEDSHEFLLYLIEGIHRSYL----KVISG-------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~-------~~~QqDa~Efl~~ll~~l~~~~~----~~~f~-------- 61 (242)
|++||..|+.+...+++|..|++.++...+.|. ++.||||+||+.+||+.|++++. ...|+
T Consensus 80 l~~lf~~l~~~~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~~~i~~~F~~~~~~~~C 159 (415)
T 1vjv_A 80 MKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKD 159 (415)
T ss_dssp HHHHHHHHHCC-CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHHHHTTTCEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhccchHHHHHHhheEEEEE
Confidence 578999999888789999999999999999998 79999999999999999999863 44555
Q ss_pred ------c------cceeeeeeCCCC-CCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEe
Q psy13202 62 ------S------NNLELSLDIYQL-SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN 128 (242)
Q Consensus 62 ------S------~f~~l~l~i~~~-~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~ 128 (242)
| +|++|+|+|+.. .+|+++|+.++.. .+. +.|+.|+..+.+.++..|.++|+||+|||+||.
T Consensus 160 ~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~ 234 (415)
T 1vjv_A 160 TANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFF 234 (415)
T ss_dssp TTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEE
T ss_pred CCCCCCccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEE
Confidence 1 899999999975 5899999999874 344 799999999999999999999999999999998
Q ss_pred ec-----ccccceeEEeccccccCccccC---------------------------------------------------
Q psy13202 129 YL-----CLKISCAVQVPLYLEFGKFMHC--------------------------------------------------- 152 (242)
Q Consensus 129 ~~-----~~K~~~~v~fp~~Ldl~~~~~~--------------------------------------------------- 152 (242)
+. ..|+++.|.||..|||.+|+..
T Consensus 235 ~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~ 314 (415)
T 1vjv_A 235 WKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQV 314 (415)
T ss_dssp EETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHH
T ss_pred EeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhch
Confidence 43 3899999999999999887631
Q ss_pred ---------------------------C-C--ceeEEEEeecccCCCCcEEEEEec--CCCCeEEEcCCcceeecccccc
Q psy13202 153 ---------------------------R-R--NLVSAVIHHGSSSFSGHYNCIGST--SSGSYHYFGDDRVQASNLQQVT 200 (242)
Q Consensus 153 ---------------------------~-~--~L~~vI~H~G~s~~~GHY~~~vr~--~~~~W~~~nD~~V~~~~~~~v~ 200 (242)
+ . +|+|||+|.|.++++|||+||+|. .+++||+|||+.|++++.++|.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~ 394 (415)
T 1vjv_A 315 ALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIE 394 (415)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHH
T ss_pred hhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHh
Confidence 0 1 999999999977999999999998 4889999999999999999887
Q ss_pred --c-------eEEEEEEEeC
Q psy13202 201 --N-------AYVVIYELLP 211 (242)
Q Consensus 201 --~-------aYiLfY~r~~ 211 (242)
. ||||||+|++
T Consensus 395 ~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 395 SLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp GGGCCTTSCEEEEEEEEETT
T ss_pred hhcCCCCcceEEEEEEEecC
Confidence 3 9999999975
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.9e-43 Score=322.91 Aligned_cols=209 Identities=31% Similarity=0.473 Sum_probs=181.1
Q ss_pred CHHHHHHHHhcCC---------CccChHHHHHHH---HhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC-----------
Q psy13202 1 MRKTLAACQAESG---------SAIIPELIINKL---KLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK----------- 57 (242)
Q Consensus 1 l~~ll~~~~~~~~---------~~i~p~~~~~~l---~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~----------- 57 (242)
|+.++..++.... ..+.|..++..+ ++..+.|.+++||||||||.+||+.|++++..
T Consensus 192 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~ 271 (476)
T 3mhs_A 192 LDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRA 271 (476)
T ss_dssp HHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 3567778876432 256676666555 48889999999999999999999999987531
Q ss_pred ----------CCcc---------------c-----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeE
Q psy13202 58 ----------VISG---------------S-----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEA 107 (242)
Q Consensus 58 ----------~~f~---------------S-----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~ 107 (242)
..|+ | +|++|+|++++..+|+++|+.|+.+|.+++. .|.|++|+.++.+
T Consensus 272 ~~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~-~~~C~~C~~~~~a 350 (476)
T 3mhs_A 272 NNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDF-NYHCGECNSTQDA 350 (476)
T ss_dssp CCCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSC-CCEETTTTEECCC
T ss_pred ccccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCC-CCcCCccCCcccE
Confidence 0144 2 8999999999999999999999999999864 4999999999999
Q ss_pred EEEEEccccCceeEEEEEEEee----cccccceeEEeccccccCccccCC------------C---ceeEEEEeecccCC
Q psy13202 108 TKQFSIEKPPIVFILLLKRFNY----LCLKISCAVQVPLYLEFGKFMHCR------------R---NLVSAVIHHGSSSF 168 (242)
Q Consensus 108 ~~~~~i~~~P~vL~i~l~Rf~~----~~~K~~~~v~fp~~Ldl~~~~~~~------------~---~L~~vI~H~G~s~~ 168 (242)
.++..|.++|++|+|||+||.+ ...|+.+.|.||+.|||.+++... . +|+|||+|.|. .+
T Consensus 351 ~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~ 429 (476)
T 3mhs_A 351 IKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VN 429 (476)
T ss_dssp EEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SS
T ss_pred EEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CC
Confidence 9999999999999999999983 347999999999999999987541 1 99999999995 99
Q ss_pred CCcEEEEEecCCCCeEEEcCCcceeecccccc--ceEEEEEEEeC
Q psy13202 169 SGHYNCIGSTSSGSYHYFGDDRVQASNLQQVT--NAYVVIYELLP 211 (242)
Q Consensus 169 ~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v~--~aYiLfY~r~~ 211 (242)
+|||++|+|..+|+||+|||+.|++++.++|. +||||||+|++
T Consensus 430 ~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 430 EGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 99999999987889999999999999999998 99999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=323.10 Aligned_cols=215 Identities=21% Similarity=0.316 Sum_probs=186.3
Q ss_pred CHHHHHHHHhcCCCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC--------cc-----------
Q psy13202 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVI--------SG----------- 61 (242)
Q Consensus 1 l~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------f~----------- 61 (242)
|+++|..|+.+. .+++|..|++.+. .+.|.++.|||||||+.+||+.|++++.... |+
T Consensus 222 l~~lf~~l~~~~-~~~~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C~~ 298 (522)
T 2f1z_A 222 LQRVFYELQHSD-KPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKE 298 (522)
T ss_dssp HHHHHHHHHHCS-SCBCCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECCSS
T ss_pred HHHHHHHHhcCC-CccCcHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCCccccchhhheeEEEEEEEEcCC
Confidence 578888998765 6899999988764 2678999999999999999999999875421 43
Q ss_pred ----c----cceeeeeeCCCCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeec---
Q psy13202 62 ----S----NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL--- 130 (242)
Q Consensus 62 ----S----~f~~l~l~i~~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~--- 130 (242)
| +|++|+|+|++..+|+++|+.|+.+|.++++++|.|+.|+ .+.+.++..|.++|++|+|||+||.+.
T Consensus 299 C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 377 (522)
T 2f1z_A 299 VDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQT 377 (522)
T ss_dssp SCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSS
T ss_pred CCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccC
Confidence 2 8999999999999999999999999999999999999996 577899999999999999999999843
Q ss_pred --ccccceeEEeccccccCccccCC-----C--ceeEEEEeecccCCCCcEEEEEec-CCCCeEEEcCCcceeecccccc
Q psy13202 131 --CLKISCAVQVPLYLEFGKFMHCR-----R--NLVSAVIHHGSSSFSGHYNCIGST-SSGSYHYFGDDRVQASNLQQVT 200 (242)
Q Consensus 131 --~~K~~~~v~fp~~Ldl~~~~~~~-----~--~L~~vI~H~G~s~~~GHY~~~vr~-~~~~W~~~nD~~V~~~~~~~v~ 200 (242)
..|+++.|.||+.|||.+++... . +|+|||+|.|. .++|||+||+|. .+++||+|||+.|++++.+++.
T Consensus 378 ~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~ 456 (522)
T 2f1z_A 378 DQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAI 456 (522)
T ss_dssp SCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHS
T ss_pred CcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHH
Confidence 47999999999999999988653 1 99999999996 899999999996 3789999999999999987653
Q ss_pred -----------------ceEEEEEEEeCCCcccCCCC
Q psy13202 201 -----------------NAYVVIYELLPSSLHHLNSS 220 (242)
Q Consensus 201 -----------------~aYiLfY~r~~~~~~~~~~~ 220 (242)
+||||||+|.+....-+...
T Consensus 457 ~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~~~~~~~ 493 (522)
T 2f1z_A 457 EHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQAV 493 (522)
T ss_dssp TTSSCCC--------CEEEEEEEEEETTSHHHHTCCC
T ss_pred HhhcCCCccccccCcCCceEEEEEEECCchHHhhccc
Confidence 69999999988765544443
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=327.01 Aligned_cols=147 Identities=17% Similarity=0.230 Sum_probs=129.9
Q ss_pred CHHHHHHHHhcC--------------------CCccChHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhcC---
Q psy13202 1 MRKTLAACQAES--------------------GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLK--- 57 (242)
Q Consensus 1 l~~ll~~~~~~~--------------------~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~--- 57 (242)
|++|+..||.+. ..+++|..|++.+++..+.|.+++||||+|||.+||+.|++++..
T Consensus 396 l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~~s~ 475 (854)
T 3ihp_A 396 VAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSEN 475 (854)
T ss_dssp HHHHHHHHHSCC---------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTTSCC
T ss_pred HHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcccCC
Confidence 467788888643 458999999999999999999999999999999999999999754
Q ss_pred --CCcc---------------c----cceeeeeeCCCC--------------------------------CCHHHHHHhh
Q psy13202 58 --VISG---------------S----NNLELSLDIYQL--------------------------------SSLDEALGQF 84 (242)
Q Consensus 58 --~~f~---------------S----~f~~l~l~i~~~--------------------------------~sl~~~l~~~ 84 (242)
..|+ | +|+.|+|+||.. .+|++||+.|
T Consensus 476 i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f 555 (854)
T 3ihp_A 476 PNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAY 555 (854)
T ss_dssp GGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHH
T ss_pred chhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHh
Confidence 2354 1 999999999952 4999999999
Q ss_pred cccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEee----cccccceeEEeccccccCccc
Q psy13202 85 FAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY----LCLKISCAVQVPLYLEFGKFM 150 (242)
Q Consensus 85 ~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~----~~~K~~~~v~fp~~Ldl~~~~ 150 (242)
+.+|.+++ |.|++|+.++.+.|+..|.++|++|+|||+||.+ ...|+++.|.||+.|||++|+
T Consensus 556 ~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 556 GAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp HSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGB
T ss_pred cCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhc
Confidence 99999986 9999999999999999999999999999999985 347999999999999998773
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=151.73 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHHhhcCCCC-----CCCCCcHHHHHHHHHHHHHHh-hc-C---CCcc---ccceeee
Q psy13202 2 RKTLAACQAESGSAIIPELIINKLKLIAHHFE-----YYRPEDSHEFLLYLIEGIHRS-YL-K---VISG---SNNLELS 68 (242)
Q Consensus 2 ~~ll~~~~~~~~~~i~p~~~~~~l~~~~~~f~-----~~~QqDa~Efl~~ll~~l~~~-~~-~---~~f~---S~f~~l~ 68 (242)
+.++..|.. ..+.|..|+..|++..|+|. +++||||.||++.|+..|... +. . ...+ +.+..+-
T Consensus 60 r~i~~~Lrk---~~~~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f 136 (374)
T 2vhf_A 60 TEIVNPLRI---YGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIF 136 (374)
T ss_dssp HTTHHHHHH---TSEECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECC
T ss_pred HHHHHHHhh---cCCCcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHh
Confidence 345566665 68999999999999988775 379999999999999998865 31 0 0000 0011111
Q ss_pred eeCC---CCCCHHHHHHhhcccccccCCCccccCcCCCceeEEEEEEccccCceeEEEEEEEeecccccceeEEeccccc
Q psy13202 69 LDIY---QLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLE 145 (242)
Q Consensus 69 l~i~---~~~sl~~~l~~~~~~e~i~~~~~~~C~~C~~~~~~~~~~~i~~~P~vL~i~l~Rf~~~~~K~~~~v~fp~~Ld 145 (242)
.+-+ ...+++..++..+-.+ | ..|.++|++|+||+.|| +...|+-.+|.||.+||
T Consensus 137 ~E~~e~~~~e~~~qL~e~nfl~~---g------------------ikisrLP~yLtVq~vRF-gKkaKIlrkV~fp~eLD 194 (374)
T 2vhf_A 137 MEKNEKVGVPTIQQLLEWSFINS---N------------------LKFAEAPSCLIIQMPRF-GKDFKLFKKIFPSLELN 194 (374)
T ss_dssp CCCC--CCCCBHHHHHHHHHHHH---T------------------EEESSCCSEEEEECCCC-SSSSSCCCCCBCCSEEC
T ss_pred cCcccccCCcHHHHhhhHHHHHc---C------------------CeeecCCcceEEeeecc-CccccccCCCCCcchhc
Confidence 1111 1234544433211111 1 22899999999999999 55689999999999999
Q ss_pred cCccccC-------------------------------------------------------------C-----------
Q psy13202 146 FGKFMHC-------------------------------------------------------------R----------- 153 (242)
Q Consensus 146 l~~~~~~-------------------------------------------------------------~----------- 153 (242)
+.+++.. +
T Consensus 195 vtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ps 274 (374)
T 2vhf_A 195 ITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPC 274 (374)
T ss_dssp CGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC----------------
T ss_pred cHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCc
Confidence 8665422 1
Q ss_pred C--ceeEEEEeecccCCCCcEEEEEec--CCCCeEEEcC
Q psy13202 154 R--NLVSAVIHHGSSSFSGHYNCIGST--SSGSYHYFGD 188 (242)
Q Consensus 154 ~--~L~~vI~H~G~s~~~GHY~~~vr~--~~~~W~~~nD 188 (242)
. +|+|||+ +++|||+||||. .+++|++||-
T Consensus 275 g~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 275 QNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred eeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0 8999999 678999999997 3789999985
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=76.86 E-value=2.7 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=28.9
Q ss_pred eEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecc
Q psy13202 157 VSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNL 196 (242)
Q Consensus 157 ~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~ 196 (242)
.+.++-.|+ .++|||+.+... .+ +.+|-..+.+++.
T Consensus 161 ~~~~vF~G~-~~~GHY~~~~~~-~~--~~vDG~~~~~~~~ 196 (211)
T 3mp2_A 161 VMHAVYTGT-TQNGHYMVDDIE-HG--YCVDGMGIKPLKK 196 (211)
T ss_dssp SEEEEEESC-TTTCEEEEEETT-TT--EEEETTEEECCCC
T ss_pred eeEEEEEcC-CCCceEEEEecc-cc--eEEeCCceeEccc
Confidence 567777995 999999999875 33 8889888888863
No 13
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=72.23 E-value=2.2 Score=33.44 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=41.4
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeeccccc--c--------ceEEEEEEEeCCCcc
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQV--T--------NAYVVIYELLPSSLH 215 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~~v--~--------~aYiLfY~r~~~~~~ 215 (242)
...|+|++.. -|++|..|- +|.||.+|-..-.+.-..+. . .+|=+|-.+-+-+..
T Consensus 109 ~~~~FI~N~~-----~HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~lP~~ 173 (191)
T 3o65_A 109 NERSFICNYK-----QHWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDC 173 (191)
T ss_dssp GCCEEEEEES-----SCEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCCCCC
T ss_pred hhhhhhhccc-----cceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCCCCC
Confidence 6789999985 699999998 89999999876555433332 1 889999888655543
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=61.27 E-value=13 Score=27.62 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=29.8
Q ss_pred ceeEEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeeccc
Q psy13202 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQ 197 (242)
Q Consensus 155 ~L~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~~ 197 (242)
+..|-|.-.|. +|-+-++-. ..-||.+||+...+-...
T Consensus 108 DfhAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 108 DFHAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp GEEEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCC
T ss_pred hhhhheeecCC----CceEEEEEc-cCceEEecccccccCCCC
Confidence 66777777776 899988887 445999999999886544
No 15
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=51.09 E-value=13 Score=31.45 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.9
Q ss_pred EEEEeecccCCCCcEEEEEecCCCCeEEEcCCcceeecc
Q psy13202 158 SAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNL 196 (242)
Q Consensus 158 ~vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~V~~~~~ 196 (242)
+..+-.|. .++|||+.+.-. ++. +++|-..+.+++.
T Consensus 261 ~a~vF~G~-~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 261 CANEYTGN-YQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EEEEEESC-GGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred EEEEEECC-CCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 33444895 889999988864 333 8999999988875
No 16
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=43.20 E-value=9.2 Score=19.64 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=11.0
Q ss_pred EEEecCCCCeEEEcC
Q psy13202 174 CIGSTSSGSYHYFGD 188 (242)
Q Consensus 174 ~~vr~~~~~W~~~nD 188 (242)
+|+|. +|.|+..++
T Consensus 12 ~Yvr~-dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRK-FGEWVLLST 25 (27)
T ss_dssp EEEEE-TTEEEEGGG
T ss_pred eeEEE-cCeEEEccc
Confidence 67887 899997654
No 17
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.32 E-value=45 Score=23.19 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=28.6
Q ss_pred EEEeecccCCCCcEEEEEecCCC-CeEEEcC----Ccceeecccccc---ceEEEEEEE
Q psy13202 159 AVIHHGSSSFSGHYNCIGSTSSG-SYHYFGD----DRVQASNLQQVT---NAYVVIYEL 209 (242)
Q Consensus 159 vI~H~G~s~~~GHY~~~vr~~~~-~W~~~nD----~~V~~~~~~~v~---~aYiLfY~r 209 (242)
+|.|... |||+...+..++ ..+.+.| .....++.++.. ++++++-++
T Consensus 72 ~I~~~~~----~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~~ef~~~w~G~~l~~~~ 126 (129)
T 3b79_A 72 AILVLKG----GDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQYTGRYFLVKK 126 (129)
T ss_dssp EEEEEGG----GEEEEEEEEETTTTEEEEECTTTTTSCEEEEHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcC----CCEEEEEEEcCCCceEEEEccCCCCCcEEeeHHHHHhhCCEEEEEEec
Confidence 5667654 799998876433 2444444 334556666655 788777655
No 18
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=30.44 E-value=43 Score=24.41 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=31.2
Q ss_pred EEEeecccCCCCcEEEEEecCCCCeEEEcCCc---ceeecccccc---ceEEEEEEEeCCCc
Q psy13202 159 AVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDR---VQASNLQQVT---NAYVVIYELLPSSL 214 (242)
Q Consensus 159 vI~H~G~s~~~GHY~~~vr~~~~~W~~~nD~~---V~~~~~~~v~---~aYiLfY~r~~~~~ 214 (242)
+|.|...+...|||+...+..++.++..|-.. ...++.++.. ++++|+-++.....
T Consensus 84 ~I~~~~~~g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~ef~~~w~G~~l~~~p~~~f~ 145 (156)
T 3k8u_A 84 FIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERFQSEWTGLAIFLAPQPNYK 145 (156)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTEEEEEECSTTTEEEEEEHHHHHHHEEEEEEEEEEC----
T ss_pred EEEEEEecCCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcHHHHHhhCceEEEEEEcCcccc
Confidence 56665321123799998876444444444322 4556666655 88888887765543
No 19
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=29.01 E-value=35 Score=23.21 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.6
Q ss_pred eEEEEeecccCCCCcEEEEEecCCCCeEEEc
Q psy13202 157 VSAVIHHGSSSFSGHYNCIGSTSSGSYHYFG 187 (242)
Q Consensus 157 ~~vI~H~G~s~~~GHY~~~vr~~~~~W~~~n 187 (242)
.|+++|.-.-...|.|+|-.+. +|+++.=+
T Consensus 59 ~Gf~I~~~~~~~~g~y~C~a~~-~g~~~~S~ 88 (95)
T 1flt_X 59 KGFIISNATYKEIGLLTCEATV-NGHLYKTN 88 (95)
T ss_dssp TEEEESSCCGGGCEEEEEEEEE-TTEEEEEE
T ss_pred CCEEEeCCCcccCcEEEEEEEE-CCEEEEEE
Confidence 5777777666788999999998 88777644
No 20
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.12 E-value=26 Score=16.30 Aligned_cols=10 Identities=20% Similarity=0.783 Sum_probs=7.8
Q ss_pred ccccCcCCCc
Q psy13202 95 LYQCEKCGYK 104 (242)
Q Consensus 95 ~~~C~~C~~~ 104 (242)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 5889999863
No 21
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=24.50 E-value=32 Score=18.41 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHH
Q psy13202 39 DSHEFLLYLIEG 50 (242)
Q Consensus 39 Da~Efl~~ll~~ 50 (242)
=|+||+.+|++.
T Consensus 10 aakdFv~WL~ng 21 (31)
T 3c5t_B 10 AVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 378999998853
No 22
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=23.77 E-value=1.6e+02 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=18.8
Q ss_pred cCCCCcEEEEEecC-CCCeEEEcCC
Q psy13202 166 SSFSGHYNCIGSTS-SGSYHYFGDD 189 (242)
Q Consensus 166 s~~~GHY~~~vr~~-~~~W~~~nD~ 189 (242)
+...|++...+... +|+|+.-|+.
T Consensus 42 ~~~~g~~~~dit~~~~GrW~~~d~~ 66 (106)
T 3aqy_A 42 GLEAGHWARDITKPKEGRWTFRDRN 66 (106)
T ss_dssp SSCCCSEEEEECCCBTTEEEEEECS
T ss_pred ccccceeeeeeeEecCCEEEEECCc
Confidence 35569998888766 8899988875
No 23
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.53 E-value=30 Score=16.14 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=7.7
Q ss_pred ccccCcCCCc
Q psy13202 95 LYQCEKCGYK 104 (242)
Q Consensus 95 ~~~C~~C~~~ 104 (242)
.|.|+.|++.
T Consensus 3 ~~~C~~C~k~ 12 (28)
T 2kvf_A 3 PYSCSVCGKR 12 (28)
T ss_dssp SEECSSSCCE
T ss_pred CccCCCCCcc
Confidence 4889999863
No 24
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.13 E-value=34 Score=17.38 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=9.2
Q ss_pred CCccccCcCCCc
Q psy13202 93 DNLYQCEKCGYK 104 (242)
Q Consensus 93 ~~~~~C~~C~~~ 104 (242)
...|.|+.|++.
T Consensus 9 ~k~~~C~~C~k~ 20 (37)
T 1p7a_A 9 IKPFQCPDCDRS 20 (37)
T ss_dssp SSSBCCTTTCCC
T ss_pred CCCccCCCCCcc
Confidence 456999999863
No 25
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.05 E-value=31 Score=15.82 Aligned_cols=9 Identities=33% Similarity=0.995 Sum_probs=6.8
Q ss_pred cccCcCCCc
Q psy13202 96 YQCEKCGYK 104 (242)
Q Consensus 96 ~~C~~C~~~ 104 (242)
|.|+.|++.
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 678888753
No 26
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=22.13 E-value=29 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=9.9
Q ss_pred CCCccccCcCCCc
Q psy13202 92 RDNLYQCEKCGYK 104 (242)
Q Consensus 92 ~~~~~~C~~C~~~ 104 (242)
++..|.|+.|++.
T Consensus 5 gekp~~C~~CgK~ 17 (36)
T 1fv5_A 5 KPARFMCLPCGIA 17 (36)
T ss_dssp SCCCCEETTTTEE
T ss_pred CccCeECCCCCCc
Confidence 4567999999863
No 27
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.69 E-value=32 Score=17.74 Aligned_cols=12 Identities=42% Similarity=1.182 Sum_probs=9.2
Q ss_pred CCccccCcCCCc
Q psy13202 93 DNLYQCEKCGYK 104 (242)
Q Consensus 93 ~~~~~C~~C~~~ 104 (242)
...|.|+.|++.
T Consensus 7 ~k~~~C~~C~k~ 18 (37)
T 2elm_A 7 GHLYYCSQCHYS 18 (37)
T ss_dssp SCEEECSSSSCE
T ss_pred CcCeECCCCCcc
Confidence 456999999864
No 28
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.35 E-value=26 Score=16.43 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=7.3
Q ss_pred ccccCcCCC
Q psy13202 95 LYQCEKCGY 103 (242)
Q Consensus 95 ~~~C~~C~~ 103 (242)
.|.|+.|++
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvg_A 3 PYRCPLCRA 11 (27)
T ss_dssp TEEETTTTE
T ss_pred CcCCCCCCc
Confidence 588999985
No 29
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=20.36 E-value=1.5e+02 Score=20.56 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=18.8
Q ss_pred CCCCcEEEEEecC-CCCeEEEcCCc
Q psy13202 167 SFSGHYNCIGSTS-SGSYHYFGDDR 190 (242)
Q Consensus 167 ~~~GHY~~~vr~~-~~~W~~~nD~~ 190 (242)
...|++...+... +|+|+.-|+..
T Consensus 42 ~~~g~~~~dit~~~~GrW~~~d~~~ 66 (107)
T 3ie4_A 42 LEAGTWARDIVKAKNGRWTFRDRIT 66 (107)
T ss_dssp SCCCSEEEEECCCBTTEEEEEESSC
T ss_pred ccccEeEEeEeEecCCEEEEECCCc
Confidence 5569998888765 89999888753
No 30
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.23 E-value=37 Score=15.85 Aligned_cols=10 Identities=50% Similarity=1.222 Sum_probs=7.7
Q ss_pred ccccCcCCCc
Q psy13202 95 LYQCEKCGYK 104 (242)
Q Consensus 95 ~~~C~~C~~~ 104 (242)
.|.|+.|++.
T Consensus 3 ~~~C~~C~~~ 12 (30)
T 2m0d_A 3 PYQCDYCGRS 12 (30)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 4889999863
No 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.21 E-value=40 Score=16.79 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=9.0
Q ss_pred CCccccCcCCCc
Q psy13202 93 DNLYQCEKCGYK 104 (242)
Q Consensus 93 ~~~~~C~~C~~~ 104 (242)
...|.|+.|++.
T Consensus 5 ~k~~~C~~C~k~ 16 (35)
T 1srk_A 5 KRPFVCRICLSA 16 (35)
T ss_dssp CSCEECSSSCCE
T ss_pred CcCeeCCCCCcc
Confidence 346899999863
Done!