RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13202
(242 letters)
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 147 bits (373), Expect = 4e-43
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 47/243 (19%)
Query: 12 SGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNN------- 64
SG P + + LK I+ HF R ED+HEFL YL++ + ++ L
Sbjct: 61 SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120
Query: 65 -------------------------------LELSLDIYQLSSLDEALGQFFAKEYLVRD 93
L+LSLDI SL++AL QF E L +
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGE 180
Query: 94 NLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCL-KISCAVQVPLYLEFGKFM-- 150
N Y+CE+C K +A+KQ +I + P V + LKRF+ KI+ + P L+ +M
Sbjct: 181 NKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQ 240
Query: 151 ----HCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTN--AYV 204
+ L + ++H G S SGHY C +S+G ++ D +V +++ V + AY+
Sbjct: 241 PNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYI 300
Query: 205 VIY 207
+ Y
Sbjct: 301 LFY 303
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 104 bits (261), Expect = 1e-26
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 52/252 (20%)
Query: 8 CQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLE- 66
+++ P+ + L I+ F Y +D+HEFLL+L++ +H + ++
Sbjct: 62 SPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAAE 121
Query: 67 ----------------------------------LSLDIYQLSSLDEAL-GQFFAKEYLV 91
LSL I SS+ + L G F E L
Sbjct: 122 NESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLKLLTGNFLKLEELE 181
Query: 92 RDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRF----NYLCLKISCAVQVPLYLEFG 147
++ Y C KCG K A K+ I + P V I+ LKRF KIS V+ PL L+
Sbjct: 182 KEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLELDLS 241
Query: 148 KFM---------HCRRNLVSAVIHHGSSSFSGHYNC-IGSTSSGSYHYFGDDRVQASNLQ 197
++ + LV+ V+H GSS GHY I + F D++V +
Sbjct: 242 SYLEEELEGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEE 301
Query: 198 QV--TNAYVVIY 207
+V ++AY++ Y
Sbjct: 302 EVLRSSAYILFY 313
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 98.7 bits (246), Expect = 6e-25
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 34 YYRPEDSHEFLLYLIEGIHRSYLKVISGSNN----------------------------- 64
+ +D+HEFLL+L++ +H K +++
Sbjct: 19 FSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHES 78
Query: 65 --------LELSLDI--YQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIE 114
L L L + SL++ L +FF +E L DN Y+CEK K EATK+ I+
Sbjct: 79 VSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIK 137
Query: 115 KPPIVFILLLKRFNYLC----LKISCAVQVPLYLEFGKFMHCRR------------NLVS 158
K P V I+ LKRF++ K++ V PL L+ ++ LV+
Sbjct: 138 KLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVA 197
Query: 159 AVIHHGSSSFSGHYNC-IGSTSSGSYHYFGDDRVQASNLQQV-------TNAYVVIYE 208
V+H G+S+ SGHY + S G ++ F DD+V + ++V ++AY++ YE
Sbjct: 198 VVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 80.8 bits (200), Expect = 2e-18
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 39/208 (18%)
Query: 39 DSHEFLLYLIEGIHRSYLKVISG--------------SNNLE----LSLDIYQLS----- 75
D+ EFLL+L++G+H + + G S E LSL I S
Sbjct: 24 DAQEFLLFLLDGLHSIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPK 83
Query: 76 -SLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCL-- 132
+L++ L F +E L DN ++C KC K +ATK+ +I + P V I+ LKRF++
Sbjct: 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGST 143
Query: 133 -KISCAVQVPL--------YLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNC-IGSTSSGS 182
K++ V PL + +L + V H+GS + GHY + +
Sbjct: 144 RKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLN-GGHYTAYCKNNETND 202
Query: 183 YHYFGDDRVQASNLQQV--TNAYVVIYE 208
++ F D RV + V ++AY++ YE
Sbjct: 203 WYKFDDSRVTKVSESSVVSSSAYILFYE 230
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 81.3 bits (201), Expect = 4e-18
Identities = 61/251 (24%), Positives = 92/251 (36%), Gaps = 73/251 (29%)
Query: 28 IAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNN----------------------- 64
+ + Y +D+HEF +L++ +H Y + +N+
Sbjct: 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQ 138
Query: 65 ------------LELSLDIYQLS---------------SLDEALGQFFAKEYLVRDNLYQ 97
L+LSLDI S +L + L +F E L D Y+
Sbjct: 139 RCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL-GDFAYK 197
Query: 98 CEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCL----KISCAVQVPLYLEFGKFMHCR 153
C CG EATKQ SI+K P V LKRF + KI VQ PL L +
Sbjct: 198 CSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSS 257
Query: 154 RN---------------LVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQ 198
L + V+H G+ +GHY G + F D + + ++
Sbjct: 258 IGDTQDSNSLDPDYTYDLFAVVVHKGTLD-TGHYTAYCRQGDGQWFKFDDAMITRVSEEE 316
Query: 199 V--TNAYVVIY 207
V + AY++ Y
Sbjct: 317 VLKSQAYLLFY 327
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 79.3 bits (196), Expect = 2e-17
Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 66/267 (24%)
Query: 7 ACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLI-------EGIHRSYLKVI 59
+ Q + I P+ I +LK F+ Y +D+HEFL +L+ + ++
Sbjct: 35 SEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR 94
Query: 60 SGSNN-------------------------------------LELSLDIYQLSSLDEALG 82
+NN L+LS+D+ Q +S+ L
Sbjct: 95 KLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQNTSITSCLR 154
Query: 83 QFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYL-----CLKISCA 137
QF A E L N + C++C EA K+ I+K P + L LKRF Y +K+
Sbjct: 155 QFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYR 214
Query: 138 VQVPLYLE-FGKFMHCRR-----NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRV 191
V PL L F LV+ V+H G GHY I + G + F D+ V
Sbjct: 215 VVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGG-WLLFDDETV 273
Query: 192 QASNLQQVTN----------AYVVIYE 208
+ + V AYV+ Y+
Sbjct: 274 EKIDENAVEEFFGDSPNQATAYVLFYQ 300
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 79.0 bits (195), Expect = 2e-17
Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 65/238 (27%)
Query: 32 FEYYRPEDSHEFLLYLIEGIHRSYLKVISGSN-------------------NLELSLDIY 72
F+ Y+ +DSHE L YL++G+ R+++ I G L+LSL
Sbjct: 46 FKGYQQQDSHELLRYLLDGL-RTFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRS 104
Query: 73 QLS----SLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRF- 127
S++ L QF E L +N + CE C T+A KQ+ I K P V ++ LKRF
Sbjct: 105 DEIKSECSIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKRFQ 161
Query: 128 ---NYLCLKISCAVQVPLYLEFGKFMHCRRNLVSA----------VIHHGSSSFSGHY-- 172
+ K+S V P L+ F + N V+ H + SGHY
Sbjct: 162 QPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVA 221
Query: 173 --------------------NCIGSTSSGSYHYFGDDRVQASNLQQVTN--AYVVIYE 208
SG ++Y D V+ +L++V AY++ YE
Sbjct: 222 YVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 70.1 bits (172), Expect = 3e-14
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 65 LELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLL 124
EL L + +L+E + +F +E L DN Y CE C KT+AT++ + P L
Sbjct: 146 YELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQL 205
Query: 125 KRFNYLCL-----KISCAVQVPLYLEFGKFM------HCRRNLVSAVIHHGSSSFSGHYN 173
RF + K++ ++ P L+ G+++ L +IH G S++SGHY
Sbjct: 206 LRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYI 265
Query: 174 C-IGSTSSGSYHYFGDDRVQ 192
I +G ++ F D+ V+
Sbjct: 266 AHIKDEQTGEWYKFNDEDVE 285
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 68.4 bits (168), Expect = 1e-13
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 65 LELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLL 124
L+L + + +L+E+L + E L DN Y CEKCG K +A K +K P V L L
Sbjct: 141 LDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQL 200
Query: 125 KRFNYLCLKISCAVQVPLYLEF----------GKFMH-------------CRRNLVSAVI 161
KRF + + +++ EF K + L ++
Sbjct: 201 KRFEF-DFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLV 259
Query: 162 HHGSSSFSGHY-NCIGSTSSGSYHYFGDDRVQASNLQQVTNAY 203
H G + GHY + I G ++ F DD V +
Sbjct: 260 HSGDAH-GGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEEC 301
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 61.1 bits (148), Expect = 6e-11
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 59 ISGSNNLELSLDI-----YQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSI 113
S + E S +I ++ +L A+ QF + E +V ++ Y CE C + TEA +
Sbjct: 159 ESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLF 218
Query: 114 EKPPIVFILLLKRFNYLCL---------KISCAVQVPLYLE-FGKFMHCRRN---LVSAV 160
+K P V + LK F K++ + PL L + + L + V
Sbjct: 219 DKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVV 278
Query: 161 IHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQA 193
+H G++ SGHY T+ + F D V+
Sbjct: 279 MHSGATISSGHY-----TAYVRWLLFDDSEVKV 306
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 60.8 bits (148), Expect = 6e-11
Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 63/236 (26%)
Query: 26 KLIAH-HFEY--YRPEDSHEFLLYLIEGIHRSYLKVISGSN------------------- 63
LI H E+ R +D+ EFLL+LI+ + R G N
Sbjct: 86 ALIGKGHPEFSTMRQQDALEFLLHLIDKLDRE-SFKNLGLNPNDLFKFMIEDRLECLSCK 144
Query: 64 --------NLELSLDI--------------YQLSSLDEALGQFFAKEYLVRDNLYQCEKC 101
+ LSL + Y+ L++ L +FA E C C
Sbjct: 145 KVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPE----TIEDFCSTC 200
Query: 102 GYKTEATKQFSIEKPPIVFILLLKRF----NYLCLKISCAVQVPLYLEFGKFMHCRRNLV 157
KT ATK + P ++ +KRF N++ K+ + VP L GK+ L+
Sbjct: 201 KEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGKY-----ELI 255
Query: 158 SAVIHHGSSSFSGHYNCI---GSTSSGSYHYFGDDRVQASNL--QQVTNAYVVIYE 208
+ + H G+S SGHY G + F D++V AS + Y+ Y+
Sbjct: 256 AFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 60.2 bits (146), Expect = 1e-10
Identities = 60/247 (24%), Positives = 87/247 (35%), Gaps = 77/247 (31%)
Query: 38 EDSHEFLLYLIEGIHR--------------SYLKVISGSNNLELSLDIYQLS--SLDEAL 81
+D E+L YL++ +H L S S E D+ LS S+ + L
Sbjct: 82 QDCSEYLRYLLDRLHTLIEKMFGGKLSTTIRCLNCNSTSARTERFRDL-DLSFPSVQDLL 140
Query: 82 GQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY------------ 129
F + E L DN Y CEKC +A K+ + P IL L RF+Y
Sbjct: 141 NYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMD 200
Query: 130 -------LCLKISCAVQVPLYLEFGKFM--------HCRR---NLVSAVIHHGSSSFSGH 171
L L + + K R+ L + V+H G SS SGH
Sbjct: 201 NVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGH 260
Query: 172 Y-----NCIGSTS----------------SGSYHYFGDDRVQASNLQQVTN--------- 201
Y + + S S +++ F D RV S+ + V N
Sbjct: 261 YFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDT 320
Query: 202 AYVVIYE 208
Y++ YE
Sbjct: 321 PYILFYE 327
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 49.1 bits (117), Expect = 8e-07
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 76 SLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY---LCL 132
+L + L +F E L + + C C +A+KQ + + P++ I+ LKRF+
Sbjct: 676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735
Query: 133 KISCAVQVPL----------YLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNC-IGSTSSG 181
KI V+ P+ ++ + ++ L + H+G S GHY + ++
Sbjct: 736 KIDDLVEYPIDDLDLSGVEYMVDDPRLIYD---LYAVDNHYGGLS-GGHYTAYARNFANN 791
Query: 182 SYHYFGDDRVQASNLQQV--TNAYVVIYE 208
++ F D R+ + + ++AYV+ Y
Sbjct: 792 GWYLFDDSRITEVDPEDSVTSSAYVLFYR 820
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 14 SAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIH 52
A P + F Y +DS EF+ +L++G+H
Sbjct: 332 HAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLH 370
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 48.5 bits (115), Expect = 1e-06
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 21/162 (12%)
Query: 67 LSLDIYQLSS--LDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLL 124
L + Y++ L E + +F+ +E L + ++C KCG K + K+ I P V I+ +
Sbjct: 254 LLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHI 313
Query: 125 KRFN-------------YLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGH 171
RF+ S V V L G R+ + V+ H + GH
Sbjct: 314 SRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGH 373
Query: 172 YNCIGSTSSGSYHYFGDD----RVQASNLQQVTNAYVVIYEL 209
Y S Y DD + + ++Y++ Y
Sbjct: 374 YFSEVKRSGTWNVY--DDSQVRKGSRTTSGSHPSSYILFYTR 413
Score = 28.8 bits (64), Expect = 3.1
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 15 AIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELS------ 68
+I P I+ L F +DS EFL++ ++ +H S S LEL
Sbjct: 140 SISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEV 199
Query: 69 ---LDIYQLSSLDEALGQFFAKEYLVRDNLY-------QCEKCGYKTEATKQFSIEKPPI 118
L + S + L K LV + QCE C Y + FS P
Sbjct: 200 REELPLSHFSHHEWNLHLRSNKS-LVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPP 258
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 47.0 bits (112), Expect = 2e-06
Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 45/166 (27%)
Query: 38 EDSHEFLLYLIEGIHRSYLKVISGS---------------------NNLELSL---DIYQ 73
+D+HE L+E + + G L L +
Sbjct: 35 QDAHELFQVLLETLEQLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGS 94
Query: 74 LSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRF----NY 129
++L+ L F + E + D Y+C++C Q I + P + + L R
Sbjct: 95 GTTLEHCLDDFLSTEI-IDD--YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRG 143
Query: 130 LCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCI 175
K SC V P L + L + V+H+GS S SGHY C
Sbjct: 144 TSTKNSCKVSFPERLPKVLY-----RLRAVVVHYGSHS-SGHYVCY 183
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 47.9 bits (114), Expect = 2e-06
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 66 ELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLK 125
++ L++ + +L E+ ++ E L DN Y EK G + +A K E P V L LK
Sbjct: 329 DIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHGLQ-DAKKGVIFESLPPVLHLQLK 387
Query: 126 RFNY-----LCLKISCAVQVPLYLEFGKFM----------HCRRNLVSAVIHHGSSSFSG 170
RF Y + +KI+ + PL ++ F+ L ++H G
Sbjct: 388 RFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGH 447
Query: 171 HYNCIGSTSSGSYHYFGDDRVQASNLQQV 199
+Y + G ++ F D RV + ++V
Sbjct: 448 YYALLKPEKDGRWYKFDDTRVTRATEKEV 476
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 40.4 bits (94), Expect = 5e-04
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 44/156 (28%)
Query: 32 FEYYRPEDSHEFLLYLIEGIHR--------------------------------SYLKVI 59
F + +D+HEFLL+L+E I + SY ++
Sbjct: 389 FGKFAQQDAHEFLLFLLEKIRKGERSYLIPPITSLFEFEVERRLSCSGCMDVSYSYESML 448
Query: 60 SGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIV 119
LE + + +++ FF + + + CE C K +A+++ I+ P
Sbjct: 449 MICIFLE---GNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKY 501
Query: 120 FILLLKRF---NYLCLKISCAVQV--PLYLEFGKFM 150
IL + R+ NY K+S +++ ++ G FM
Sbjct: 502 LILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFM 537
Score = 27.3 bits (60), Expect = 8.9
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 155 NLVSAVIHHGSSSFSGHYNC-IGSTSSGSYHY--FGDDR-VQASNLQQV-TNAYVVIYEL 209
L + + H G S +GHY I + + D++ V S+++ + N Y+ +++
Sbjct: 689 ALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748
Query: 210 L 210
Sbjct: 749 C 749
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 32.0 bits (73), Expect = 0.23
Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 64 NLELSL---DIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVF 120
LEL D Q + L + +E + N C C + A + ++ P +
Sbjct: 149 TLELPYPPIDKPQGRTFSNILERSLNRE---KINRITCNSCRKYSLANSRKHVKSLPPIL 205
Query: 121 ILLLKRFNYLCLKISCA----VQVPLYLEFGKFMHCRRN-------------LVSAVIHH 163
+ LKR+N V +PL + F+ L V H
Sbjct: 206 GICLKRYNVTPNGNWSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLSGNFKYELQGVVCHI 265
Query: 164 GSSSFSGHY 172
G S+ SGH
Sbjct: 266 GDSTHSGHL 274
>gnl|CDD|220145 pfam09223, YodA, YodA lipocalin-like domain. Members of this
family of prokaryotic domains have been identified as
part of the response of bacteria to a challenge with the
toxic heavy metal cadmium. They are able to bind to
cadmium, and ensure its subsequent elimination.
Length = 182
Score = 29.5 bits (67), Expect = 0.95
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 168 FSGHYNCIGSTSSGSYH-YFGDDRVQASNLQQVTN 201
FS H I T + +H Y+G+D Q L+++ N
Sbjct: 130 FSDHN--IAPTKADHFHLYWGNDS-QEKLLKEMEN 161
>gnl|CDD|129440 TIGR00340, zpr1_rel, ZPR1-related zinc finger protein. This model
describes a strictly archaeal family homologous to the
domain duplicated in the eukaryotic zinc-binding protein
ZPR1. ZPR1 was shown experimentally to bind
approximately two moles of zinc; each copy of the domain
contains a putative zinc finger of the form
CXXCX(25)CXXC. ZPR1 binds the tyrosine kinase domain of
epidermal growth factor receptor, but is displaced by
receptor activation and autophosphorylation after which
it redistributes in part to the nucleus. The proteins
described by This model by analogy may be suggested to
play a role in signal transduction. A model ZPR1_znf
(TIGR00310) has been created to describe the domain
shared by this protein and ZPR1 [Unknown function,
General].
Length = 163
Score = 29.4 bits (66), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 96 YQCEKCGYKTEATKQFSIEKPPIVFIL 122
Y CEKCGY++ Q EK P+ +I+
Sbjct: 29 YICEKCGYRSTDVYQLE-EKEPVRYII 54
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 29.6 bits (67), Expect = 1.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 155 NLVSAVIHHGSSSFSGHY 172
LV+ + H G S+ SGHY
Sbjct: 242 ELVAVITHQGRSADSGHY 259
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 29.2 bits (65), Expect = 1.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 98 CEKCGYKTEATKQFSIEKPPIVF 120
C KCGY T TK S+ F
Sbjct: 212 CPKCGYPTTETKDLSMSTRSYKF 234
>gnl|CDD|232914 TIGR00310, ZPR1_znf, ZPR1 zinc finger domain. An orthologous
protein found once in each of the completed archaeal
genomes corresponds to a zinc finger-containing domain
repeated as the N-terminal and C-terminal halves of the
mouse protein ZPR1. ZPR1 is an experimentally proven
zinc-binding protein that binds the tyrosine kinase
domain of the epidermal growth factor receptor (EGFR);
binding is inhibited by EGF stimulation and tyrosine
phosphorylation, and activation by EGF is followed by
some redistribution of ZPR1 to the nucleus. By analogy,
other proteins with the ZPR1 zinc finger domain may be
regulatory proteins that sense protein phosphorylation
state and/or participate in signal transduction.
Length = 192
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 98 CEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCLKI----SCAVQVP 141
CE CGY++ K K P +IL + L ++ S +++P
Sbjct: 33 CEHCGYRSNDVKTLG-AKEPKRYILKIDDEADLNRRVVKSESATIRIP 79
>gnl|CDD|221428 pfam12115, Salp15, Salivary protein of 15kDa inhibits CD4+ T cell
activation. This is a family of 15kDa salivary
proteins from Acari Arachnids that is induced on
feeding and assists the parasite to remain attached to
its arthropod host. By repressing calcium fluxes
triggered by TCR engagement, Salp15 inhibits CD4+ T
cell activation. Salp15 shows weak similarity to
Inhibin A, a member of the TGF-beta superfamily that
inhibits the production of cytokines and the
proliferation of T cells.
Length = 112
Score = 26.2 bits (58), Expect = 8.2
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 4 TLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIE 49
L +C+ S S+ I + + E L L++
Sbjct: 11 GLCSCEESSSSSPDN---------IGGNLPDLIGDCKTELALQLLQ 47
>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes.The EcCorA-ZntB-like
family includes the Mg2+ transporters Escherichia coli
and Salmonella typhimurium CorAs, which can also
transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB-like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, such as occur in some ZntB
family proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 289
Score = 27.1 bits (61), Expect = 8.4
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 26 KLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISG----SNNLELSL-------DIYQL 74
+ + + FLL ++ I SYLK + + LE L +++QL
Sbjct: 91 DFLEGRVKNFDTSSKTRFLLQILYRIATSYLKYLRQINKERDELEQELRKSTKNKELFQL 150
Query: 75 SSL 77
L
Sbjct: 151 LDL 153
>gnl|CDD|111768 pfam02917, Pertussis_S1, Pertussis toxin, subunit 1.
Length = 239
Score = 27.0 bits (59), Expect = 8.5
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 185 YFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSLHSSSPGSVEPRTHHRNY 238
+F D + A+N+++V+ P H + S + EP H+ +
Sbjct: 134 WFADGPIAAANIRRVSAVLHDAIPGEPGHAEHPAARYVSEQTRANEPEMHNPHR 187
>gnl|CDD|237216 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
C-like protein; Provisional.
Length = 477
Score = 27.2 bits (60), Expect = 9.2
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 47 LIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTE 106
+I GI R L N LS Y + S+ + F ++ V + +
Sbjct: 146 MIAGILREVLISTKYLKNRNLSDFAYLVLSVGMVIASFLLTQFFVISVTTNLPE--IRIN 203
Query: 107 ATKQFSIEKPPIVFILLLKRFNYLCLKISCAVQVPLYLEF 146
S F + L + ++ L + + +++ +
Sbjct: 204 GGFDLSFNAVSQTFKISLVVYTWIILYFGIGIIIFMWVLY 243
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 26.7 bits (59), Expect = 9.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 132 LKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHY 172
LK + + K+ +LV+ + H G S + GHY
Sbjct: 167 LKKNEEIMKKYCGTDAKY-----SLVAVICHLGESPYDGHY 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,027,223
Number of extensions: 1111853
Number of successful extensions: 952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 51
Length of query: 242
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 148
Effective length of database: 6,768,326
Effective search space: 1001712248
Effective search space used: 1001712248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)