RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13202
(242 letters)
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 133 bits (336), Expect = 1e-36
Identities = 61/259 (23%), Positives = 94/259 (36%), Gaps = 64/259 (24%)
Query: 12 SGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNN------- 64
+ ++ I + Y +D+HEF ++I IH+SY+ + +
Sbjct: 215 TNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNK 274
Query: 65 ----------------------------------LELSLDIYQLSSLDEALGQFFAKEYL 90
L+LSLDI L E L F KE L
Sbjct: 275 QCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQL 334
Query: 91 VRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLC----LKISCAVQVPLYLEF 146
+D Y C +C +A KQ I K P V +L LKRF +L K+ ++ P YL
Sbjct: 335 -KDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNM 393
Query: 147 GKFMHCRR---------------NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRV 191
+ + L+ V H G+ + GHY S G + F D V
Sbjct: 394 KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN-EGHYIAFCKISGGQWFKFNDSMV 452
Query: 192 QASNLQQV--TNAYVVIYE 208
+ + ++V AY++ Y
Sbjct: 453 SSISQEEVLKEQAYLLFYT 471
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 131 bits (330), Expect = 1e-36
Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 73/273 (26%)
Query: 9 QAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIH----RSYLKVISGSNN 64
+ + P +++ A F Y +D+ EFL +L++G+H R L+ S N
Sbjct: 70 TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129
Query: 65 LE----------------------------------------------------LSLDI- 71
L+ LSL I
Sbjct: 130 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 189
Query: 72 ---YQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFN 128
Y +L + + F ++ L D C +C + K+FSI++ P + +L LKRF+
Sbjct: 190 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFS 249
Query: 129 YLCL---KISCAVQVPL-YLEFGKFM-----HCRRNLVSAVIHHGSSSFSGHYNC-IGST 178
+ K++ V PL L+ +F H NL + H G ++ GHY S
Sbjct: 250 ESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSG-TTMGGHYTAYCRSP 308
Query: 179 SSGSYHYFGDDRVQASNLQQV--TNAYVVIYEL 209
+G +H F D V + QV ++AY++ YEL
Sbjct: 309 GTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 341
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 114 bits (286), Expect = 7e-30
Identities = 57/269 (21%), Positives = 94/269 (34%), Gaps = 72/269 (26%)
Query: 11 ESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIE--------------------- 49
I P+ + I F Y +DS E LL+L++
Sbjct: 126 GQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENND 185
Query: 50 ----------------------------GIHRSYLKVISG---SNNLE----LSLDI--Y 72
G +S ++ ++ S E LSL +
Sbjct: 186 HLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLAST 245
Query: 73 QLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCL 132
+L + L F +E L +N + C C + ++ K+ I K P V ++ LKRF+Y
Sbjct: 246 SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGR 305
Query: 133 ---KISCAVQVPL-------YLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNC-IGSTSSG 181
K+ +V PL Y+ K + NL S H+G GHY + +
Sbjct: 306 WKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQ 364
Query: 182 SYHYFGDDRVQASNLQQV--TNAYVVIYE 208
+ F D V ++ V + AY++ Y
Sbjct: 365 RWFKFDDHEVSDISVSSVKSSAAYILFYT 393
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 110 bits (276), Expect = 9e-29
Identities = 47/255 (18%), Positives = 80/255 (31%), Gaps = 61/255 (23%)
Query: 11 ESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIH------------------ 52
S + + + + + D E L++ +
Sbjct: 62 HSDKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRG 119
Query: 53 --RSYLKVISGSNN-------LELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGY 103
SY++ ++ L I ++ E+ + A E L DN Y + G
Sbjct: 120 KMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL 179
Query: 104 KTEATKQFSIEKPPIVFILLLKRFNYLC-----LKISCAVQVPLYLEFGKFM-------H 151
+ EA K P V L L RF Y +KI+ + P L +F+
Sbjct: 180 Q-EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDP 238
Query: 152 CRRNLVSAVIHHGSSSFSGHYNCIG-STSSGSYHYFGDDRVQASNLQQV----------- 199
L + ++H G + GHY G + F DD V ++
Sbjct: 239 ANYILHAVLVHSGDNH-GGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDD 297
Query: 200 ------TNAYVVIYE 208
TNAY+++Y
Sbjct: 298 LSVRHCTNAYMLVYI 312
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 110 bits (277), Expect = 3e-28
Identities = 47/254 (18%), Positives = 78/254 (30%), Gaps = 59/254 (23%)
Query: 11 ESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIH------------------ 52
S + + + + + D E L++ +
Sbjct: 231 HSDKPVGTKKLTKSFGW--ETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRG 288
Query: 53 --RSYLKVISGSNN-------LELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGY 103
SY++ ++ L I ++ E+ + A E L DN Y + G
Sbjct: 289 KMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL 348
Query: 104 KTEATKQFSIEKPPIVFILLLKRFNYLC-----LKISCAVQVPLYLEFGKFMHCRRNLVS 158
+ EA K P V L L RF Y +KI+ + P L +F+
Sbjct: 349 Q-EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDP 407
Query: 159 ------AVIHHGSSSFSGHYNCIG-STSSGSYHYFGDDRVQASNLQQV------------ 199
AV+ H + GHY G + F DD V ++
Sbjct: 408 ANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL 467
Query: 200 -----TNAYVVIYE 208
TNAY+++Y
Sbjct: 468 SVRHCTNAYMLVYI 481
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 101 bits (252), Expect = 2e-25
Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 33 EYYRPEDSHEFLLYLIEGIHRSYLKVISGSNN-------LELSLDIYQLS------SLDE 79
Y EDS ++ L G +S LK + +LSL I + SL +
Sbjct: 153 RYLEREDSK--IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRD 210
Query: 80 ALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLCL---KISC 136
F +E L +N C++C KT +TK+ ++++ P + +L L RF+ K S
Sbjct: 211 CFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSV 270
Query: 137 AVQVPL-YLEFGKFM-----HCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDR 190
V PL L G F L + H GS GHY + +H + D R
Sbjct: 271 GVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVH-YGHYTALCR-CQTGWHVYNDSR 328
Query: 191 VQASNLQQVTN--AYVVIYELLPSS 213
V + QV + YV+ Y+L+
Sbjct: 329 VSPVSENQVASSEGYVLFYQLMQEP 353
Score = 45.0 bits (106), Expect = 8e-06
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 9 QAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKV 58
+S A+ P + F Y +D+ EFL L+E +H +
Sbjct: 63 HPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRR 112
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 98.1 bits (244), Expect = 3e-24
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 72 YQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLC 131
+L + + F E L + + C C +ATK+F + P + ++ LKRF+Y
Sbjct: 208 KTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNR 267
Query: 132 L---KISCAVQVPL-------YLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNC-IGSTSS 180
K+ V+ P+ ++ +L++ H+G + GHY + +
Sbjct: 268 YWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLN 326
Query: 181 GSYHYFGDDRVQASNLQQV--TNAYVVIYE 208
G ++YF D V ++ Q+ AYV+ Y+
Sbjct: 327 GKWYYFDDSNVSLASEDQIVTKAAYVLFYQ 356
Score = 50.3 bits (120), Expect = 1e-07
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVIS 60
+ + + + + P + ++ A F Y+ +DS E L +L++G+H +V
Sbjct: 62 YAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKK 121
Query: 61 GSNNLELSLDIYQLSSL-DEALGQFFAKEY-LVRDNLY-------QCEKCGYKT 105
+ + + EA + ++ D + C +C +
Sbjct: 122 KPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVS 175
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 62.4 bits (151), Expect = 2e-11
Identities = 35/274 (12%), Positives = 70/274 (25%), Gaps = 67/274 (24%)
Query: 11 ESGSAIIPELIINKLKLIAHHFEY------YRPEDSHEFLLYLIEGIHRSYLKVISGSNN 64
++ S+I P +++ L + F Y +D++E + ++ + + + S
Sbjct: 75 KTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK 134
Query: 65 LE----------------------------------------------LSLDIY---QLS 75
L L + ++
Sbjct: 135 ETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVK 194
Query: 76 SLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY-----L 130
L L +E Q K I + P + + RF Y +
Sbjct: 195 YLFTGLKLRLQEE-----ITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESV 249
Query: 131 CLKISCAVQVPLYLEFGKFM--HCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGD 188
K+ V+ PL L+ + + +VS ++ S
Sbjct: 250 NAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEV 309
Query: 189 DRVQASNLQQVTNAYVVIYELLPSSLHHLNSSLH 222
S + + Y+L H SS
Sbjct: 310 KYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSS 343
Score = 47.7 bits (113), Expect = 1e-06
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 145 EFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTN--- 201
+ G +L + + H G SS SGHY + F DD+V + +
Sbjct: 319 DIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSG 378
Query: 202 ------AYVVIYE 208
AYV++Y
Sbjct: 379 GGDWHIAYVLLYG 391
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 53.0 bits (126), Expect = 3e-08
Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 7/138 (5%)
Query: 17 IPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLELSLDIYQLSS 76
I L K+K + + L E + K + + L +
Sbjct: 488 IKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVP 547
Query: 77 LDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRF----NYLCL 132
L + A E + + + K+ A K P ++ +K+F +++
Sbjct: 548 FSSCLEAYGAPEQV---DDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPK 604
Query: 133 KISCAVQVPLYLEFGKFM 150
K+ ++++P L+ +
Sbjct: 605 KLDVSIEMPEELDISQLR 622
Score = 44.5 bits (104), Expect = 2e-05
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 152 CRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLP 211
+ L + + H G+S+ GHY C G + + D +V AS Y+ Y+ +
Sbjct: 795 GKYQLFAFISHMGTSTMCGHYVCH-IKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVA 853
Query: 212 S 212
S
Sbjct: 854 S 854
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-05
Identities = 57/352 (16%), Positives = 94/352 (26%), Gaps = 156/352 (44%)
Query: 25 LKLIAHHFE--YYRPEDSHEFLLYLIE----------GIHRSYLKVISGSNNLELSLDIY 72
L L FE Y D H L++ + ++Y+ + D
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR---PFDKK 140
Query: 73 QLSSLDEAL------------GQ-----FFAKE-------Y--LVRD-------NLYQCE 99
S+L A+ GQ +F +E Y LV D L +
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 100 KCGYKTEA--TKQFSIEK--------PPIVFILLLKRFNYLCLKISCAVQVPL------- 142
+ E T+ +I + P +YL S + PL
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDK---------DYLL---SIPISCPLIGVIQLA 247
Query: 143 -YLEFGKFMH---------------CRRNLVSAVIHHGSSSFSGHYNC----------IG 176
Y+ K + + LV+AV + S+ + IG
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 177 STSSGSY--HYFGDDRVQAS-----------------NLQQV------TNAYV----VIY 207
+Y ++ S +QV TN+++ +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 208 ELL------------PSSLHHLNSSLH----------SSSPGSVE-PRTHHR 236
L P SL+ LN +L S P S + +R
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Score = 38.1 bits (88), Expect = 0.002
Identities = 36/231 (15%), Positives = 62/231 (26%), Gaps = 78/231 (33%)
Query: 7 ACQAESGSAIIPELIINKLKLIAHHFEYYRPEDSHEFLLYLIEGIHRSYLKVISGSNNLE 66
A E + EL+ L ++ E + + L + YL+ N
Sbjct: 49 AADDEPTTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-----GN-- 99
Query: 67 LSLDIYQL--SSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLL 124
DI+ L L E + L+++ Y + +K L
Sbjct: 100 ---DIHALAAKLLQENDTTLVKTKELIKN--Y------ITARIMAKRPFDKKS--NSALF 146
Query: 125 KRFNYLCLKISCAVQ---VPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGSTSSG 181
+ AV L FG G G+T
Sbjct: 147 R-----------AVGEGNAQLVAIFG----------------------GQ----GNTDD- 168
Query: 182 SYHYFGDDRVQASNLQQVTNAY-VVIYELLPSSLHHLNSSLHSSSPGSVEP 231
YF + L+ + Y V++ +L+ S L+ + E
Sbjct: 169 ---YFEE-------LRDLYQTYHVLVGDLIKFSAETLSEL--IRTTLDAEK 207
Score = 32.3 bits (73), Expect = 0.15
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 30/109 (27%)
Query: 151 HCRRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGD---DRVQASNLQQVTNAYVVIY 207
+ R L + HGS T+S + ++ L + T +
Sbjct: 4 YSTRPLT---LSHGSLEHVLLV----PTAS---FFIASQLQEQFNKI-LPEPTEGFAADD 52
Query: 208 ELLPSS--------LHHLNSSLHSSSPGSVEP------RTHHRNYMAHE 242
E P++ L +++S + S G + Y+
Sbjct: 53 E--PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 43.7 bits (102), Expect = 3e-05
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 32/184 (17%)
Query: 1 MRKTLAACQAESGSAIIPELIINKLKLIAHHFEY-------YRPEDSHEFLLYLIEGIHR 53
M++ Q +S +++P +++N L+ F Y+ +D+ E L +
Sbjct: 80 MKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSI 139
Query: 54 SYLKVISGSNNLELSLDI-----------------YQLSSLDEALGQFFAKEYLVRDNLY 96
+ S ++ I +L F L N
Sbjct: 140 VFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK 199
Query: 97 ---QCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY-----LCLKISCAVQVPLYLEFGK 148
+ + G + + + I + P + RF + KI V P L+
Sbjct: 200 IEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVAD 259
Query: 149 FMHC 152
+
Sbjct: 260 MLTP 263
Score = 41.0 bits (95), Expect = 2e-04
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 83 QFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLC----------- 131
++ A++ VRD L + EK + E + P ++ R Y
Sbjct: 264 EYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQ 323
Query: 132 LKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCIGST--SSGSYHYFGDD 189
P LE G+ C NL+ + H G++S SGHY ++ F DD
Sbjct: 324 WLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDD 383
Query: 190 RVQASNLQQV---------TNAYVVIYE 208
+V +++ +A +++Y+
Sbjct: 384 KVSVVEKEKIESLAGGGESDSALILMYK 411
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.016
Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 27/110 (24%)
Query: 28 IAHHFEYYRPEDSHEFL--LYL----IEG--IHRSYLKVISGS-NNLELSLDIYQ----- 73
I HH + + ++L +E H S SGS N L Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 74 ----LSSLDEALGQFFAK--EYLVRD---NLYQC----EKCGYKTEATKQ 110
L A+ F K E L+ +L + E EA KQ
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 32.9 bits (74), Expect = 0.090
Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 96/229 (41%)
Query: 3 KT-LAA--CQAES--------------GSAIIPELIINKLKLIAHHFEYYRPEDSHEFLL 45
KT +A C + + PE ++ L+ + + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------------ 210
Query: 46 YLIEGIHRSYLKVISGSNNLELSLDIYQLSSLDEALGQFFA-KEY----LVRDNLYQCE- 99
++ S+N++L + S+ L + K Y LV N+ +
Sbjct: 211 -------PNWTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 100 ------KCGYKT---------------EATKQFSIEKPPIVFI------LLLKRFNYLCL 132
C K T S++ + LLLK YL
Sbjct: 259 WNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDC 313
Query: 133 KISC----AVQV-PLYLEFGKFMHCRRNLVSAVIHHGSSSFSG--HYNC 174
+ + P L ++++ I G +++ H NC
Sbjct: 314 RPQDLPREVLTTNPRRL----------SIIAESIRDGLATWDNWKHVNC 352
Score = 27.1 bits (59), Expect = 6.2
Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 76/229 (33%)
Query: 9 QAESGS----AIIPELIINKLKLIAHHFEYYRPEDSHE-------FLLYLIEGIHRSY-- 55
+ + + +II E I + L ++ ++ + + L L +R
Sbjct: 321 EVLTTNPRRLSIIAESIRDGL----ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 56 -LKVISGSNNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIE 114
L V S ++ L LS + + + V + + K + KQ
Sbjct: 377 RLSVFPPSAHIPTIL----LSLIWFDV-----IKSDVMVVVNKLHK---YSLVEKQP--- 421
Query: 115 KPPIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNC 174
K + I + YL LK+ + L H R++V HYN
Sbjct: 422 KESTISIPSI----YLELKVKLENEYAL--------H--RSIVD------------HYNI 455
Query: 175 IGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSLHS 223
+ DD + + Y Y + HHL + H
Sbjct: 456 P-------KTFDSDDL-----IPPYLDQY--FYSHIG---HHLKNIEHP 487
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.90
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 213 SLHHLNSSLHSSSPGSVEP 231
+L L +SL + S P
Sbjct: 21 ALKKLQASLKLYADDSA-P 38
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Length = 209
Score = 29.3 bits (65), Expect = 0.94
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 57 KVISGSNNLELSLDIYQLSSLDEALGQFFAK------EYLVRDNLYQCEKCGYK 104
KVIS L + Y L++ + LG A + QC K K
Sbjct: 145 KVIS----LGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK 194
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 28.3 bits (62), Expect = 1.9
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 153 RRNLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPS 212
++ S I +G Y + + +++ + + E L S
Sbjct: 78 QKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLES 137
Query: 213 SL-HHLNSSLHSSSPGSVEPR 232
L+ SL S
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLT 158
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 28.0 bits (63), Expect = 3.1
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 1 MRKTLAACQAES---GSAIIPELIINKLKLIAHHFEYY 35
M L + GS +IP +++ A+ ++ Y
Sbjct: 240 MLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGY 277
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 27.1 bits (59), Expect = 6.5
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 96 YQCEKCGYKTEATKQFSIEKP-PIVFILLLKRFNYLCLKISCAVQVPLYLEFGKFMHCRR 154
G T+ + ++++ P L + N +K+ + L
Sbjct: 537 VGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKIN---VKLGGVNNILLPQGRPPVFQQPV 593
Query: 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYH---YFGDDRVQASNLQQVTNAYVVIYELL 210
+ A + H + + S H Y RVQ + + + ++ ELL
Sbjct: 594 IFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELL 652
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,730,854
Number of extensions: 212105
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 34
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)