RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13202
(242 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 67.8 bits (164), Expect = 6e-14
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Query: 63 NNLELSLDIYQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFIL 122
L L L +L + L F +E L +N + C C + ++ K+ I K P V ++
Sbjct: 189 MYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLV 248
Query: 123 LLKRFNY----------LCLKISCAVQVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHY 172
LKRF+Y + + Y+ K + NL S H+G GHY
Sbjct: 249 HLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD-GGHY 307
Query: 173 NC-IGSTSSGSYHYFGDDRVQASNLQQV--TNAYVVIYE 208
+ + + F D V ++ V + AY++ Y
Sbjct: 308 TAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYT 346
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 64.8 bits (156), Expect = 7e-13
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 72 YQLSSLDEALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLC 131
Y +L + + F ++ L D C +C + K+FSI++ P + +L LKRF+
Sbjct: 187 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESR 246
Query: 132 LKISCAVQVPLYLEFGKFM---------HCRRNLVSAVIHHGSSSFSGHYNC-IGSTSSG 181
++ S + + H NL + H G++ GHY S +G
Sbjct: 247 IRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTM-GGHYTAYCRSPGTG 305
Query: 182 SYHYFGDDRVQASNLQQV--TNAYVVIYEL 209
+H F D V + QV ++AY++ YEL
Sbjct: 306 EWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 335
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 45.1 bits (105), Expect = 3e-06
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 155 NLVSAVIHHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQV---------TNAYVV 205
+L + + H G SS SGHY + F DD+V + + AYV+
Sbjct: 319 DLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVL 378
Query: 206 IYE 208
+Y
Sbjct: 379 LYG 381
Score = 25.9 bits (55), Expect = 4.7
Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 55/203 (27%)
Query: 3 KTLAACQAESGSAIIPELIINKLKLIAHHFE------YYRPEDSHEFLLYLIEGIHRSYL 56
+ L ++ S+I P +++ L + F Y +D++E + ++ + +
Sbjct: 57 RDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLE 116
Query: 57 K------------------------VISGSNNLELSLDIYQLSSLDEALGQFF------- 85
+I +E + S +E + +
Sbjct: 117 AIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLS 176
Query: 86 -------------AKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNY--- 129
K L + Q K I + P + + RF Y
Sbjct: 177 CFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK 236
Query: 130 --LCLKISCAVQVPLYLEFGKFM 150
+ K+ V+ PL L+ +
Sbjct: 237 ESVNAKVLKDVKFPLMLDMYELC 259
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 45.2 bits (105), Expect = 3e-06
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 139 QVPLYLEFGKFMHCRRNLVSAVIHHGSSSFSGHYNCI--GSTSSGSYHYFGDDRVQASNL 196
P LE G+ C NL+ + H G++S SGHY ++ F DD+V
Sbjct: 313 HFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEK 372
Query: 197 QQV---------TNAYVVIYE 208
+++ +A +++Y+
Sbjct: 373 EKIESLAGGGESDSALILMYK 393
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 43.9 bits (102), Expect = 7e-06
Identities = 38/158 (24%), Positives = 54/158 (34%), Gaps = 30/158 (18%)
Query: 80 ALGQFFAKEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILLLKRFNYLC-----LKI 134
+ + A E L DN Y + G EA K P V L L RF Y +KI
Sbjct: 156 SFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKI 214
Query: 135 SCAVQVPLYLEFGKFMHCRRNLVS------AVIHHGSSSFSGHYNCIG-STSSGSYHYFG 187
+ + P L +F+ AV+ H + GHY G + F
Sbjct: 215 NDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFD 274
Query: 188 DDRVQASNLQQV-----------------TNAYVVIYE 208
DD V ++ TNAY+++Y
Sbjct: 275 DDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI 312
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 284
Score = 26.9 bits (59), Expect = 2.1
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 17 IPELIINKLKLIAHHFEYYRPED--------------SHEFLLYLIEGIHRSYLKVISG 61
+ + L+ F Y+ D + ++ L +I+ H S+ ++I+G
Sbjct: 174 VEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAG 232
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human
(Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 25.6 bits (55), Expect = 2.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 161 IHHGSSSFSGHYNCIGSTSSGS 182
I + + SG Y C + S+ S
Sbjct: 56 IDAATVNDSGEYRCQTNLSTLS 77
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 26.3 bits (57), Expect = 2.7
Identities = 15/68 (22%), Positives = 23/68 (33%)
Query: 162 HHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSL 221
H +S F G + GD A T+A ++ + H
Sbjct: 68 HGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLA 127
Query: 222 HSSSPGSV 229
HSS PG++
Sbjct: 128 HSSDPGAL 135
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 26.0 bits (56), Expect = 3.3
Identities = 11/68 (16%), Positives = 18/68 (26%)
Query: 162 HHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSL 221
H +F G + GD + ++ + H
Sbjct: 63 HGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLG 122
Query: 222 HSSSPGSV 229
HSS P +V
Sbjct: 123 HSSDPKAV 130
>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 110
Score = 25.6 bits (55), Expect = 3.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 169 SGHYNCIGSTSSGSYHYFG 187
S Y C S +SG+Y FG
Sbjct: 83 SATYFCAASANSGTYQRFG 101
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 26.1 bits (57), Expect = 4.3
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 87 KEYLVRDNLYQCEKCGYKTEATKQFSIEKPPIVFILL 123
+ + +C+K G E K F++EK I ++
Sbjct: 225 EPFFPESCKIECQKLGIDIEMLKSFNVEKDAIELLIP 261
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 25.6 bits (55), Expect = 5.2
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 162 HHGSSSFSGHYNCIGSTSSGSYHYFGDDRVQASNLQQVTNAYVVIYELLPSSLHHLNSSL 221
H F G + +Y GD ++ ++ + H
Sbjct: 69 HGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLD 128
Query: 222 HSSSPGSV 229
HS PG++
Sbjct: 129 HSKDPGAL 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 910,124
Number of extensions: 41236
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 15
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.7 bits)