Query psy13204
Match_columns 189
No_of_seqs 155 out of 2569
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:49:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09445 Methyltransf_15: RNA 99.9 1.7E-23 3.6E-28 148.8 8.8 122 65-188 1-128 (163)
2 KOG2730|consensus 99.9 2.2E-22 4.9E-27 146.5 4.4 155 32-188 60-223 (263)
3 TIGR02085 meth_trns_rumB 23S r 99.7 4.7E-17 1E-21 131.6 12.6 115 26-141 190-312 (374)
4 PHA03412 putative methyltransf 99.7 1.7E-16 3.7E-21 118.9 13.7 144 28-184 13-165 (241)
5 PRK03522 rumB 23S rRNA methylu 99.7 5.7E-17 1.2E-21 128.4 10.6 116 26-142 130-253 (315)
6 COG2263 Predicted RNA methylas 99.7 1.7E-16 3.8E-21 113.8 11.3 102 37-142 13-121 (198)
7 PF05175 MTS: Methyltransferas 99.7 3.3E-16 7.1E-21 113.7 11.3 101 41-142 7-111 (170)
8 PRK05031 tRNA (uracil-5-)-meth 99.7 1.4E-16 3.1E-21 128.2 10.0 117 25-142 159-301 (362)
9 COG2265 TrmA SAM-dependent met 99.7 9.1E-16 2E-20 125.3 13.2 106 37-143 262-376 (432)
10 PF13659 Methyltransf_26: Meth 99.7 2.3E-16 5.1E-21 107.3 7.6 79 64-142 1-83 (117)
11 PRK13168 rumA 23S rRNA m(5)U19 99.7 1.9E-15 4E-20 125.0 14.2 105 37-142 266-380 (443)
12 TIGR00095 RNA methyltransferas 99.7 3.1E-16 6.8E-21 115.4 8.0 128 41-170 24-162 (189)
13 PF05958 tRNA_U5-meth_tr: tRNA 99.7 8.2E-16 1.8E-20 123.4 10.9 106 37-143 166-292 (352)
14 TIGR02143 trmA_only tRNA (urac 99.6 7.9E-16 1.7E-20 123.5 9.8 117 25-142 150-292 (353)
15 COG4123 Predicted O-methyltran 99.6 1.8E-15 3.8E-20 114.3 10.6 82 64-145 45-131 (248)
16 PRK10909 rsmD 16S rRNA m(2)G96 99.6 2.5E-15 5.4E-20 111.2 11.0 98 43-141 30-133 (199)
17 PF03602 Cons_hypoth95: Conser 99.6 1.3E-15 2.7E-20 111.5 8.6 130 39-170 14-156 (183)
18 TIGR00479 rumA 23S rRNA (uraci 99.6 2.2E-15 4.7E-20 124.3 10.8 115 26-141 249-374 (431)
19 TIGR01177 conserved hypothetic 99.6 7E-15 1.5E-19 117.2 13.1 91 52-143 169-262 (329)
20 TIGR03533 L3_gln_methyl protei 99.6 1E-14 2.3E-19 113.9 13.1 106 37-143 91-203 (284)
21 COG2890 HemK Methylase of poly 99.6 4.4E-15 9.6E-20 115.5 10.9 91 51-143 97-190 (280)
22 KOG3420|consensus 99.6 4.2E-16 9E-21 106.9 3.0 132 49-185 28-167 (185)
23 PF01170 UPF0020: Putative RNA 99.6 6.3E-15 1.4E-19 107.7 9.4 92 51-142 14-119 (179)
24 PRK11805 N5-glutamine S-adenos 99.6 2.5E-14 5.4E-19 112.8 12.5 106 37-143 103-215 (307)
25 COG0742 N6-adenine-specific me 99.6 3.2E-14 6.9E-19 103.0 11.4 132 38-171 14-158 (187)
26 PRK15001 SAM-dependent 23S rib 99.6 3.5E-14 7.7E-19 114.2 12.4 101 42-142 205-311 (378)
27 COG1092 Predicted SAM-dependen 99.6 8.5E-15 1.8E-19 117.7 8.7 101 44-146 200-307 (393)
28 PRK14966 unknown domain/N5-glu 99.6 3.7E-14 8E-19 114.6 12.3 105 37-143 224-333 (423)
29 PF12847 Methyltransf_18: Meth 99.6 5.7E-14 1.2E-18 94.7 11.2 74 64-137 2-78 (112)
30 PRK15128 23S rRNA m(5)C1962 me 99.6 1.7E-14 3.7E-19 117.1 10.0 98 44-143 203-307 (396)
31 PHA03411 putative methyltransf 99.6 3E-14 6.5E-19 109.2 10.4 97 42-146 45-143 (279)
32 TIGR00536 hemK_fam HemK family 99.6 6.3E-14 1.4E-18 109.6 12.2 107 37-143 84-196 (284)
33 COG1041 Predicted DNA modifica 99.6 4.6E-14 1E-18 110.7 11.1 106 40-146 170-281 (347)
34 COG2813 RsmC 16S RNA G1207 met 99.5 7.9E-14 1.7E-18 107.5 11.3 103 37-141 130-236 (300)
35 KOG2187|consensus 99.5 1.4E-14 3E-19 117.7 7.2 120 26-146 340-472 (534)
36 PRK14967 putative methyltransf 99.5 1.6E-13 3.6E-18 103.7 12.3 81 61-143 34-115 (223)
37 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.5E-14 5.4E-19 106.6 7.6 103 63-182 59-162 (243)
38 TIGR03704 PrmC_rel_meth putati 99.5 1.6E-13 3.5E-18 105.4 12.1 103 37-143 56-167 (251)
39 TIGR03534 RF_mod_PrmC protein- 99.5 2E-13 4.3E-18 104.8 12.3 92 51-143 74-168 (251)
40 PRK01544 bifunctional N5-gluta 99.5 1.3E-13 2.8E-18 115.5 12.1 81 64-144 139-221 (506)
41 COG0116 Predicted N6-adenine-s 99.5 1.3E-13 2.9E-18 109.5 11.4 91 51-141 177-311 (381)
42 PF02475 Met_10: Met-10+ like- 99.5 1.6E-13 3.6E-18 101.3 10.5 108 37-144 74-184 (200)
43 PF10672 Methyltrans_SAM: S-ad 99.5 6.5E-14 1.4E-18 108.6 8.8 98 44-143 106-209 (286)
44 PRK09489 rsmC 16S ribosomal RN 99.5 2.1E-13 4.7E-18 108.9 11.9 101 38-141 169-273 (342)
45 smart00650 rADc Ribosomal RNA 99.5 1.5E-13 3.3E-18 99.6 10.1 76 63-141 13-89 (169)
46 TIGR00537 hemK_rel_arch HemK-r 99.5 3.7E-13 8E-18 98.4 11.9 77 64-143 20-96 (179)
47 PRK11783 rlmL 23S rRNA m(2)G24 99.5 7.5E-14 1.6E-18 121.1 9.3 97 44-142 521-621 (702)
48 COG2226 UbiE Methylase involve 99.5 8E-14 1.7E-18 105.2 7.6 94 63-157 51-148 (238)
49 COG2264 PrmA Ribosomal protein 99.5 2.4E-13 5.3E-18 105.3 10.1 92 46-137 145-237 (300)
50 PF13847 Methyltransf_31: Meth 99.5 5.2E-13 1.1E-17 95.1 10.3 80 63-143 3-87 (152)
51 PRK11207 tellurite resistance 99.5 2E-13 4.4E-18 101.3 8.3 94 63-157 30-126 (197)
52 TIGR00477 tehB tellurite resis 99.5 1.7E-13 3.7E-18 101.6 7.8 95 64-162 31-128 (195)
53 KOG2904|consensus 99.5 1.4E-12 2.9E-17 98.7 11.9 117 51-167 131-266 (328)
54 PRK11036 putative S-adenosyl-L 99.5 1.8E-13 3.9E-18 105.5 7.2 95 63-157 44-141 (255)
55 PRK09328 N5-glutamine S-adenos 99.4 2.7E-12 5.8E-17 99.9 12.3 92 51-143 94-189 (275)
56 PRK14968 putative methyltransf 99.4 3.8E-12 8.2E-17 93.4 12.4 81 62-142 22-103 (188)
57 PTZ00338 dimethyladenosine tra 99.4 2.2E-12 4.7E-17 101.0 11.4 91 52-143 23-115 (294)
58 PLN02244 tocopherol O-methyltr 99.4 1.2E-12 2.6E-17 104.8 10.1 95 63-157 118-215 (340)
59 PRK00107 gidB 16S rRNA methylt 99.4 2.5E-12 5.4E-17 94.5 10.7 78 59-137 41-120 (187)
60 PRK14904 16S rRNA methyltransf 99.4 3.1E-12 6.7E-17 105.9 12.4 83 62-145 249-334 (445)
61 PF06325 PrmA: Ribosomal prote 99.4 1.6E-12 3.5E-17 101.5 10.0 89 48-139 146-235 (295)
62 PRK11727 23S rRNA mA1618 methy 99.4 1.6E-12 3.4E-17 102.6 9.9 81 64-144 115-204 (321)
63 TIGR00446 nop2p NOL1/NOP2/sun 99.4 3.8E-12 8.3E-17 98.5 11.5 83 62-145 70-156 (264)
64 COG2520 Predicted methyltransf 99.4 1.1E-12 2.4E-17 103.5 8.4 115 29-143 153-270 (341)
65 PF03848 TehB: Tellurite resis 99.4 1.1E-12 2.3E-17 96.1 7.7 99 64-166 31-132 (192)
66 PRK00274 ksgA 16S ribosomal RN 99.4 2.2E-12 4.9E-17 100.3 9.7 88 52-143 29-119 (272)
67 COG2242 CobL Precorrin-6B meth 99.4 8.6E-12 1.9E-16 90.0 11.7 88 48-136 17-109 (187)
68 PRK14896 ksgA 16S ribosomal RN 99.4 4.8E-12 1E-16 97.7 11.0 87 52-142 16-104 (258)
69 TIGR00138 gidB 16S rRNA methyl 99.4 3.1E-12 6.7E-17 93.7 9.2 73 64-137 43-117 (181)
70 PF02353 CMAS: Mycolic acid cy 99.4 5.9E-13 1.3E-17 103.2 5.7 114 26-142 17-140 (273)
71 TIGR02752 MenG_heptapren 2-hep 99.4 3.7E-12 8E-17 96.7 9.9 102 55-157 35-143 (231)
72 TIGR00080 pimt protein-L-isoas 99.4 1.1E-11 2.4E-16 93.3 12.2 88 53-141 65-158 (215)
73 PF01209 Ubie_methyltran: ubiE 99.4 5.7E-12 1.2E-16 95.7 10.7 73 62-135 46-122 (233)
74 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.8E-12 3.9E-17 99.5 7.9 98 59-157 52-156 (247)
75 PLN02396 hexaprenyldihydroxybe 99.4 6.7E-13 1.4E-17 105.1 5.5 99 64-164 132-232 (322)
76 PRK10258 biotin biosynthesis p 99.4 1.3E-12 2.9E-17 100.4 6.9 99 53-157 30-132 (251)
77 PRK12335 tellurite resistance 99.4 1.6E-12 3.4E-17 101.9 6.6 95 64-162 121-218 (287)
78 PRK11783 rlmL 23S rRNA m(2)G24 99.4 7E-12 1.5E-16 108.9 11.2 92 51-142 175-316 (702)
79 PRK14903 16S rRNA methyltransf 99.4 8.9E-12 1.9E-16 102.6 11.3 84 62-146 236-324 (431)
80 COG2230 Cfa Cyclopropane fatty 99.4 3.1E-12 6.7E-17 98.4 7.9 95 61-157 70-168 (283)
81 PRK14103 trans-aconitate 2-met 99.3 2.9E-12 6.2E-17 98.8 7.0 92 63-164 29-123 (255)
82 PF02384 N6_Mtase: N-6 DNA Met 99.3 7.3E-12 1.6E-16 99.2 9.1 97 48-144 29-140 (311)
83 PRK10901 16S rRNA methyltransf 99.3 2.7E-11 5.8E-16 99.9 12.6 80 62-143 243-327 (427)
84 PLN02672 methionine S-methyltr 99.3 6.4E-12 1.4E-16 111.9 9.4 81 64-144 119-218 (1082)
85 PRK13944 protein-L-isoaspartat 99.3 5.2E-11 1.1E-15 88.9 12.8 89 53-141 60-154 (205)
86 PLN02233 ubiquinone biosynthes 99.3 1.3E-11 2.8E-16 95.4 9.7 96 62-157 72-174 (261)
87 PRK01683 trans-aconitate 2-met 99.3 4.5E-12 9.9E-17 97.8 7.0 89 63-157 31-122 (258)
88 PRK14901 16S rRNA methyltransf 99.3 2.6E-11 5.6E-16 100.2 11.7 83 62-145 251-341 (434)
89 PRK00377 cbiT cobalt-precorrin 99.3 5.3E-11 1.2E-15 88.4 11.8 90 48-137 23-119 (198)
90 PRK04338 N(2),N(2)-dimethylgua 99.3 1.4E-11 3E-16 99.8 9.3 95 43-138 31-134 (382)
91 TIGR02021 BchM-ChlM magnesium 99.3 4.7E-11 1E-15 90.0 11.6 74 63-138 55-128 (219)
92 PRK08287 cobalt-precorrin-6Y C 99.3 8E-11 1.7E-15 86.7 12.4 91 47-139 13-107 (187)
93 PRK14902 16S rRNA methyltransf 99.3 3.8E-11 8.3E-16 99.5 11.8 82 62-144 249-335 (444)
94 TIGR00406 prmA ribosomal prote 99.3 4.8E-11 1E-15 93.6 11.7 88 51-139 147-235 (288)
95 PRK00121 trmB tRNA (guanine-N( 99.3 6.6E-12 1.4E-16 93.6 5.7 76 63-139 40-121 (202)
96 TIGR00740 methyltransferase, p 99.3 1.9E-11 4E-16 93.4 8.3 96 61-157 51-153 (239)
97 TIGR03587 Pse_Me-ase pseudamin 99.3 3.9E-11 8.4E-16 89.5 9.8 77 60-142 40-118 (204)
98 PF13649 Methyltransf_25: Meth 99.3 1.7E-11 3.7E-16 81.2 7.1 67 67-135 1-73 (101)
99 TIGR00563 rsmB ribosomal RNA s 99.3 7.7E-11 1.7E-15 97.2 12.0 84 63-146 238-326 (426)
100 PRK13942 protein-L-isoaspartat 99.3 1.2E-10 2.7E-15 87.3 12.1 84 53-137 64-153 (212)
101 PRK00312 pcm protein-L-isoaspa 99.3 1.6E-10 3.4E-15 86.8 12.4 88 53-141 66-156 (212)
102 TIGR02469 CbiT precorrin-6Y C5 99.3 2.4E-10 5.3E-15 78.0 12.4 87 52-139 6-98 (124)
103 PRK10742 putative methyltransf 99.2 5.7E-11 1.2E-15 89.8 9.6 85 62-146 85-181 (250)
104 PF07021 MetW: Methionine bios 99.2 5.3E-11 1.1E-15 86.4 9.1 79 55-141 5-87 (193)
105 PRK00517 prmA ribosomal protei 99.2 8.7E-11 1.9E-15 90.3 10.6 82 51-139 107-189 (250)
106 PF08241 Methyltransf_11: Meth 99.2 3.7E-12 8.1E-17 82.8 2.5 71 68-142 1-73 (95)
107 TIGR00755 ksgA dimethyladenosi 99.2 1E-10 2.2E-15 90.2 10.6 87 52-142 16-107 (253)
108 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.8E-11 3.9E-16 91.8 6.2 96 62-157 33-144 (213)
109 PRK11088 rrmA 23S rRNA methylt 99.2 4.3E-11 9.3E-16 93.1 8.4 103 28-136 49-158 (272)
110 PRK11873 arsM arsenite S-adeno 99.2 4.4E-11 9.5E-16 93.0 8.3 96 61-157 75-175 (272)
111 KOG3191|consensus 99.2 1.4E-10 3.1E-15 82.8 9.8 81 64-146 44-127 (209)
112 TIGR00091 tRNA (guanine-N(7)-) 99.2 5.2E-11 1.1E-15 88.2 8.0 77 63-140 16-98 (194)
113 COG4106 Tam Trans-aconitate me 99.2 2.3E-11 4.9E-16 89.3 5.8 73 64-142 31-105 (257)
114 KOG1270|consensus 99.2 1E-11 2.2E-16 93.6 3.8 76 64-141 90-170 (282)
115 PTZ00098 phosphoethanolamine N 99.2 6E-11 1.3E-15 91.8 8.2 97 62-163 51-152 (263)
116 PLN02781 Probable caffeoyl-CoA 99.2 1.4E-10 3.1E-15 88.2 10.1 85 54-139 60-154 (234)
117 PRK15068 tRNA mo(5)U34 methylt 99.2 4.1E-11 9E-16 95.2 7.4 101 64-166 123-225 (322)
118 PRK05785 hypothetical protein; 99.2 9.9E-11 2.1E-15 88.7 8.7 80 53-141 41-122 (226)
119 PLN02336 phosphoethanolamine N 99.2 1.3E-10 2.8E-15 97.2 10.0 99 62-164 265-366 (475)
120 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.7E-10 5.7E-15 91.8 10.9 77 64-141 123-204 (390)
121 PRK07402 precorrin-6B methylas 99.2 4.8E-10 1E-14 83.1 11.6 89 48-137 23-117 (196)
122 smart00828 PKS_MT Methyltransf 99.2 4.8E-11 1E-15 90.2 6.1 93 65-157 1-96 (224)
123 COG0030 KsgA Dimethyladenosine 99.2 3.2E-10 6.9E-15 86.5 10.3 90 53-145 18-111 (259)
124 TIGR00452 methyltransferase, p 99.2 1.1E-10 2.3E-15 92.3 7.7 101 64-166 122-224 (314)
125 KOG0820|consensus 99.2 4.4E-10 9.5E-15 85.2 10.2 96 49-146 43-140 (315)
126 PRK11705 cyclopropane fatty ac 99.2 2.7E-10 5.8E-15 92.6 9.8 96 62-165 166-265 (383)
127 COG2518 Pcm Protein-L-isoaspar 99.1 7.2E-10 1.6E-14 81.7 11.0 83 53-136 60-145 (209)
128 PLN02585 magnesium protoporphy 99.1 5.1E-10 1.1E-14 88.5 10.7 74 64-139 145-222 (315)
129 PRK07580 Mg-protoporphyrin IX 99.1 6.5E-10 1.4E-14 84.2 10.5 77 63-141 63-139 (230)
130 PLN02476 O-methyltransferase 99.1 6.9E-10 1.5E-14 85.9 10.1 86 54-140 110-205 (278)
131 PRK04266 fibrillarin; Provisio 99.1 1E-09 2.2E-14 83.0 10.3 74 62-138 71-150 (226)
132 PF05401 NodS: Nodulation prot 99.1 5.1E-10 1.1E-14 81.6 7.7 75 64-141 44-118 (201)
133 PRK06922 hypothetical protein; 99.1 1E-09 2.2E-14 93.1 10.6 77 63-141 418-499 (677)
134 TIGR03438 probable methyltrans 99.1 6.2E-10 1.3E-14 87.8 8.8 105 53-157 53-169 (301)
135 PF01596 Methyltransf_3: O-met 99.1 8.7E-10 1.9E-14 82.1 9.0 86 53-139 36-131 (205)
136 PRK13943 protein-L-isoaspartat 99.1 2.5E-09 5.4E-14 84.8 12.0 83 53-136 68-156 (322)
137 TIGR02987 met_A_Alw26 type II 99.1 7.7E-10 1.7E-14 93.6 9.6 94 49-143 8-126 (524)
138 PRK00216 ubiE ubiquinone/menaq 99.1 9.2E-10 2E-14 83.6 9.1 78 63-140 51-132 (239)
139 PRK13255 thiopurine S-methyltr 99.1 1.7E-09 3.7E-14 81.4 10.2 96 62-157 36-147 (218)
140 COG0286 HsdM Type I restrictio 99.1 6.4E-09 1.4E-13 87.0 14.4 138 48-185 169-332 (489)
141 PLN02490 MPBQ/MSBQ methyltrans 99.1 7.1E-10 1.5E-14 88.4 8.0 103 51-157 98-207 (340)
142 TIGR02081 metW methionine bios 99.0 1.2E-09 2.5E-14 80.9 8.6 82 56-145 6-91 (194)
143 PLN02336 phosphoethanolamine N 99.0 4.4E-10 9.6E-15 94.0 7.0 91 64-157 38-134 (475)
144 COG2519 GCD14 tRNA(1-methylade 99.0 2.1E-09 4.4E-14 81.1 9.7 81 61-141 92-175 (256)
145 PF01135 PCMT: Protein-L-isoas 99.0 3.7E-09 8E-14 78.9 10.6 86 53-139 60-151 (209)
146 PLN03075 nicotianamine synthas 99.0 1.2E-09 2.5E-14 85.1 8.0 101 63-166 123-232 (296)
147 KOG1271|consensus 99.0 2E-09 4.3E-14 77.2 8.4 93 42-134 39-141 (227)
148 TIGR02072 BioC biotin biosynth 99.0 7.6E-10 1.6E-14 84.0 6.8 89 64-157 35-127 (240)
149 PRK08317 hypothetical protein; 99.0 1.8E-09 3.8E-14 81.9 8.6 94 62-157 18-116 (241)
150 PF08003 Methyltransf_9: Prote 99.0 1.1E-09 2.4E-14 84.7 7.2 116 64-181 116-233 (315)
151 KOG1540|consensus 99.0 4.5E-09 9.7E-14 79.1 10.0 100 56-157 91-206 (296)
152 PRK06202 hypothetical protein; 99.0 2.2E-09 4.8E-14 81.6 8.4 78 63-144 60-144 (232)
153 PRK05134 bifunctional 3-demeth 99.0 1.6E-09 3.5E-14 82.4 7.4 77 64-142 49-127 (233)
154 TIGR00308 TRM1 tRNA(guanine-26 99.0 4.6E-09 9.9E-14 84.9 10.4 74 65-140 46-124 (374)
155 PF08242 Methyltransf_12: Meth 99.0 2.6E-11 5.6E-16 80.0 -2.2 89 68-157 1-95 (99)
156 TIGR01983 UbiG ubiquinone bios 99.0 1.4E-09 3.1E-14 82.1 7.0 93 64-157 46-141 (224)
157 KOG2671|consensus 99.0 6.5E-10 1.4E-14 86.7 5.0 87 60-146 205-301 (421)
158 PF08704 GCD14: tRNA methyltra 99.0 8.7E-09 1.9E-13 78.6 10.9 81 61-141 38-125 (247)
159 PF13489 Methyltransf_23: Meth 99.0 4.2E-10 9.1E-15 80.3 3.5 91 54-155 13-105 (161)
160 PF05185 PRMT5: PRMT5 arginine 99.0 6.6E-09 1.4E-13 85.8 10.9 83 53-135 170-264 (448)
161 COG2521 Predicted archaeal met 99.0 3.5E-10 7.6E-15 84.0 2.7 96 62-157 133-237 (287)
162 PRK11933 yebU rRNA (cytosine-C 99.0 1.2E-08 2.6E-13 84.7 11.8 84 62-146 112-200 (470)
163 PRK00811 spermidine synthase; 99.0 7.1E-09 1.5E-13 81.1 9.9 76 62-137 75-158 (283)
164 cd02440 AdoMet_MTases S-adenos 98.9 5.9E-09 1.3E-13 68.0 7.9 75 66-141 1-78 (107)
165 PRK04148 hypothetical protein; 98.9 1.6E-08 3.4E-13 69.8 10.0 81 52-140 3-89 (134)
166 PRK04457 spermidine synthase; 98.9 2.9E-09 6.2E-14 82.4 7.2 75 63-137 66-144 (262)
167 KOG1500|consensus 98.9 7E-09 1.5E-13 81.0 8.8 74 64-138 178-252 (517)
168 COG4122 Predicted O-methyltran 98.9 1E-08 2.2E-13 76.6 9.3 85 53-138 50-141 (219)
169 PLN02589 caffeoyl-CoA O-methyl 98.9 9.9E-09 2.1E-13 78.4 8.6 85 53-138 70-165 (247)
170 TIGR02716 C20_methyl_CrtF C-20 98.9 1.1E-08 2.5E-13 80.8 8.9 102 63-167 149-255 (306)
171 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.1E-08 2.4E-13 76.9 8.4 76 63-141 39-118 (223)
172 KOG1499|consensus 98.9 9.5E-09 2.1E-13 80.7 8.0 71 64-135 61-133 (346)
173 PRK13256 thiopurine S-methyltr 98.9 2.5E-08 5.3E-13 75.2 9.4 98 44-142 22-137 (226)
174 PF05971 Methyltransf_10: Prot 98.9 2.2E-08 4.7E-13 78.1 9.3 80 64-143 103-191 (299)
175 PTZ00146 fibrillarin; Provisio 98.8 3.2E-08 6.8E-13 77.0 10.1 90 46-138 110-211 (293)
176 PRK03612 spermidine synthase; 98.8 1.2E-08 2.6E-13 86.1 8.4 80 62-141 296-385 (521)
177 smart00138 MeTrc Methyltransfe 98.8 5.6E-09 1.2E-13 80.9 5.8 106 64-171 100-246 (264)
178 COG0144 Sun tRNA and rRNA cyto 98.8 6.1E-08 1.3E-12 78.1 11.7 83 63-146 156-246 (355)
179 COG4076 Predicted RNA methylas 98.8 4.6E-09 1E-13 75.7 4.5 70 64-135 33-102 (252)
180 PRK01581 speE spermidine synth 98.8 2.5E-08 5.4E-13 79.6 8.9 82 59-140 146-237 (374)
181 PRK11188 rrmJ 23S rRNA methylt 98.8 2E-08 4.3E-13 75.2 7.7 65 61-137 49-125 (209)
182 PF00398 RrnaAD: Ribosomal RNA 98.8 2.9E-08 6.2E-13 76.9 8.7 88 51-141 16-109 (262)
183 PRK00050 16S rRNA m(4)C1402 me 98.8 2.3E-08 5E-13 78.2 8.1 77 62-141 18-102 (296)
184 PLN02366 spermidine synthase 98.8 5.9E-08 1.3E-12 76.6 10.5 79 61-139 89-175 (308)
185 PF02390 Methyltransf_4: Putat 98.8 4.4E-08 9.6E-13 72.5 9.1 77 64-141 18-100 (195)
186 PF05724 TPMT: Thiopurine S-me 98.8 2.4E-08 5.2E-13 75.1 7.5 100 44-143 16-130 (218)
187 KOG1541|consensus 98.8 4E-08 8.6E-13 72.6 7.7 66 64-135 51-118 (270)
188 PF04445 SAM_MT: Putative SAM- 98.7 5.3E-08 1.1E-12 73.3 7.7 79 65-143 77-165 (234)
189 cd00315 Cyt_C5_DNA_methylase C 98.7 7.6E-08 1.6E-12 75.0 8.5 102 66-177 2-108 (275)
190 TIGR00417 speE spermidine synt 98.7 1.3E-07 2.7E-12 73.6 9.7 78 63-140 72-156 (270)
191 TIGR00438 rrmJ cell division p 98.7 7.4E-08 1.6E-12 70.9 7.6 65 61-137 30-106 (188)
192 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 1.1E-07 2.4E-12 74.3 8.6 86 63-149 85-176 (283)
193 KOG3010|consensus 98.7 1E-08 2.2E-13 76.6 2.1 106 50-155 20-126 (261)
194 PF00145 DNA_methylase: C-5 cy 98.6 2.4E-07 5.1E-12 73.7 8.7 101 66-178 2-108 (335)
195 KOG4300|consensus 98.6 2.6E-08 5.7E-13 72.9 2.8 101 65-170 78-186 (252)
196 KOG2915|consensus 98.5 8.2E-07 1.8E-11 67.7 9.5 84 61-144 103-192 (314)
197 COG4976 Predicted methyltransf 98.5 3.5E-09 7.6E-14 78.6 -3.1 112 49-168 110-226 (287)
198 PLN02823 spermine synthase 98.5 6.1E-07 1.3E-11 71.7 9.3 77 62-138 102-185 (336)
199 COG0220 Predicted S-adenosylme 98.5 3.9E-07 8.5E-12 68.8 7.7 76 65-141 50-131 (227)
200 PF10294 Methyltransf_16: Puta 98.5 4.9E-07 1.1E-11 65.7 7.9 75 64-139 46-130 (173)
201 COG3963 Phospholipid N-methylt 98.5 6.2E-07 1.4E-11 63.6 7.5 92 49-146 32-134 (194)
202 KOG1663|consensus 98.5 1.5E-06 3.2E-11 64.8 9.5 92 46-138 55-158 (237)
203 KOG2078|consensus 98.5 6.9E-08 1.5E-12 77.5 1.9 89 37-125 222-312 (495)
204 COG0270 Dcm Site-specific DNA 98.5 1.5E-06 3.2E-11 69.5 9.4 101 65-175 4-111 (328)
205 PF04816 DUF633: Family of unk 98.4 1.6E-06 3.5E-11 64.5 8.9 69 67-135 1-72 (205)
206 TIGR00675 dcm DNA-methyltransf 98.4 1.6E-06 3.5E-11 68.9 8.4 101 67-177 1-105 (315)
207 PF13679 Methyltransf_32: Meth 98.4 2.9E-06 6.3E-11 59.6 8.3 73 63-135 25-105 (141)
208 COG3897 Predicted methyltransf 98.4 1.1E-06 2.3E-11 64.0 5.7 80 52-135 66-148 (218)
209 TIGR00006 S-adenosyl-methyltra 98.3 6.5E-06 1.4E-10 64.7 9.9 76 63-140 20-103 (305)
210 PRK11524 putative methyltransf 98.3 3.1E-06 6.7E-11 66.3 8.1 57 50-106 194-251 (284)
211 PF08123 DOT1: Histone methyla 98.3 6.6E-06 1.4E-10 61.3 9.3 91 48-139 26-132 (205)
212 PF11599 AviRa: RRNA methyltra 98.3 5.8E-06 1.2E-10 61.1 8.7 109 34-142 16-181 (246)
213 TIGR01444 fkbM_fam methyltrans 98.3 2.9E-06 6.4E-11 59.4 7.1 58 66-124 1-60 (143)
214 KOG1661|consensus 98.3 6.6E-06 1.4E-10 60.6 8.7 84 53-136 72-169 (237)
215 PF03291 Pox_MCEL: mRNA cappin 98.3 4.8E-06 1E-10 66.5 8.2 74 63-136 62-152 (331)
216 PF01564 Spermine_synth: Sperm 98.2 7.1E-06 1.5E-10 63.0 8.6 87 53-139 66-160 (246)
217 PF01861 DUF43: Protein of unk 98.2 1.7E-05 3.7E-10 59.9 10.0 78 64-144 45-127 (243)
218 PF01555 N6_N4_Mtase: DNA meth 98.2 4.9E-06 1.1E-10 62.5 7.2 54 50-103 177-231 (231)
219 TIGR00497 hsdM type I restrict 98.2 4.3E-05 9.3E-10 64.6 13.5 136 49-184 199-360 (501)
220 COG3129 Predicted SAM-dependen 98.2 5.1E-06 1.1E-10 62.0 6.6 79 64-142 79-166 (292)
221 TIGR00478 tly hemolysin TlyA f 98.2 2.4E-06 5.1E-11 64.7 4.8 37 64-100 76-113 (228)
222 PRK11760 putative 23S rRNA C24 98.2 4.7E-06 1E-10 66.1 6.5 72 62-141 210-282 (357)
223 PRK10458 DNA cytosine methylas 98.2 2.8E-05 6.1E-10 64.7 10.8 80 64-146 88-186 (467)
224 PRK13699 putative methylase; P 98.1 1.3E-05 2.9E-10 60.7 8.1 59 50-108 149-208 (227)
225 PRK01544 bifunctional N5-gluta 98.1 9.6E-06 2.1E-10 68.4 7.8 77 64-141 348-429 (506)
226 COG2384 Predicted SAM-dependen 98.1 2.7E-05 5.8E-10 57.9 9.1 82 54-135 7-91 (226)
227 KOG4058|consensus 98.1 1.3E-05 2.9E-10 55.8 6.6 90 45-135 53-146 (199)
228 PF02527 GidB: rRNA small subu 98.1 4.1E-05 8.8E-10 56.1 8.9 69 66-135 51-121 (184)
229 COG4262 Predicted spermidine s 98.0 9.6E-06 2.1E-10 64.5 5.0 83 59-141 285-377 (508)
230 COG0357 GidB Predicted S-adeno 98.0 3.5E-05 7.6E-10 57.6 7.4 71 64-135 68-141 (215)
231 KOG1975|consensus 98.0 7.8E-06 1.7E-10 63.9 3.9 82 59-140 113-207 (389)
232 PF00891 Methyltransf_2: O-met 98.0 4.7E-05 1E-09 58.1 8.2 67 64-140 101-169 (241)
233 COG0421 SpeE Spermidine syntha 98.0 5.3E-05 1.2E-09 59.1 8.3 74 64-137 77-157 (282)
234 PF12147 Methyltransf_20: Puta 97.9 6.6E-05 1.4E-09 58.2 8.4 79 64-142 136-222 (311)
235 KOG1122|consensus 97.9 7.7E-05 1.7E-09 60.3 8.7 82 63-145 241-328 (460)
236 KOG1227|consensus 97.8 3.2E-05 6.9E-10 59.9 4.9 77 59-135 190-268 (351)
237 PF05219 DREV: DREV methyltran 97.8 0.00017 3.7E-09 55.1 8.7 82 44-135 69-157 (265)
238 PF02005 TRM: N2,N2-dimethylgu 97.8 7.1E-05 1.5E-09 60.8 7.1 77 64-141 50-132 (377)
239 PHA01634 hypothetical protein 97.8 0.00017 3.7E-09 49.1 7.4 69 64-136 29-99 (156)
240 PF07091 FmrO: Ribosomal RNA m 97.8 0.00015 3.3E-09 55.1 7.7 83 51-135 93-177 (251)
241 PF06080 DUF938: Protein of un 97.8 5.5E-05 1.2E-09 56.0 5.0 98 49-146 10-119 (204)
242 PRK00536 speE spermidine synth 97.7 0.00056 1.2E-08 52.9 10.1 78 61-140 70-150 (262)
243 PF05148 Methyltransf_8: Hypot 97.7 3E-05 6.5E-10 57.4 2.4 101 52-171 62-163 (219)
244 PF01728 FtsJ: FtsJ-like methy 97.6 4.1E-05 8.9E-10 55.9 2.7 62 64-137 24-99 (181)
245 COG0293 FtsJ 23S rRNA methylas 97.6 0.00017 3.7E-09 53.4 5.8 68 60-139 42-121 (205)
246 KOG2361|consensus 97.6 6.6E-05 1.4E-09 56.5 3.3 68 66-135 74-150 (264)
247 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.00038 8.2E-09 55.6 7.3 76 64-141 53-132 (380)
248 KOG2899|consensus 97.5 0.00017 3.7E-09 54.4 4.9 43 64-106 59-103 (288)
249 PF01269 Fibrillarin: Fibrilla 97.5 0.0023 5E-08 48.0 10.8 90 46-138 51-152 (229)
250 PLN02232 ubiquinone biosynthes 97.5 7.9E-05 1.7E-09 53.4 2.5 69 89-157 1-73 (160)
251 KOG1501|consensus 97.5 0.00028 6.1E-09 57.5 5.6 61 65-125 68-129 (636)
252 PF01795 Methyltransf_5: MraW 97.4 0.00016 3.5E-09 56.9 4.2 77 62-140 19-104 (310)
253 TIGR03439 methyl_EasF probable 97.4 0.0014 3E-08 52.2 9.3 72 53-124 66-144 (319)
254 PF09243 Rsm22: Mitochondrial 97.4 0.0012 2.7E-08 51.4 8.7 54 54-107 22-80 (274)
255 COG0275 Predicted S-adenosylme 97.4 0.0016 3.5E-08 50.8 9.1 82 54-137 12-104 (314)
256 KOG3045|consensus 97.3 0.00024 5.2E-09 54.2 3.4 87 64-170 181-268 (325)
257 PF05891 Methyltransf_PK: AdoM 97.2 0.001 2.2E-08 49.6 5.9 71 64-135 56-128 (218)
258 KOG2940|consensus 97.2 0.00062 1.3E-08 51.2 4.5 77 64-143 73-151 (325)
259 KOG2198|consensus 97.1 0.0024 5.2E-08 51.1 7.2 86 60-146 152-253 (375)
260 PRK10611 chemotaxis methyltran 97.1 0.00067 1.5E-08 53.2 4.0 136 33-171 84-266 (287)
261 PF13578 Methyltransf_24: Meth 97.0 0.00022 4.7E-09 47.3 0.4 70 68-138 1-78 (106)
262 COG1189 Predicted rRNA methyla 97.0 0.00042 9.1E-09 52.2 1.8 72 64-141 80-156 (245)
263 PF03059 NAS: Nicotianamine sy 96.9 0.0044 9.5E-08 48.2 7.2 71 65-135 122-198 (276)
264 COG1889 NOP1 Fibrillarin-like 96.8 0.013 2.8E-07 43.3 8.3 88 46-136 54-152 (231)
265 KOG2912|consensus 96.8 0.0034 7.4E-08 49.4 5.4 75 68-142 107-191 (419)
266 PF01739 CheR: CheR methyltran 96.7 0.0086 1.9E-07 44.4 7.2 106 64-171 32-179 (196)
267 KOG4589|consensus 96.7 0.0024 5.3E-08 46.5 3.9 66 61-138 67-145 (232)
268 COG0863 DNA modification methy 96.6 0.015 3.3E-07 45.7 8.2 59 50-108 208-267 (302)
269 PF06962 rRNA_methylase: Putat 96.6 0.0094 2E-07 41.6 6.0 59 87-145 1-62 (140)
270 COG1568 Predicted methyltransf 96.5 0.0039 8.4E-08 48.2 4.2 77 64-142 153-234 (354)
271 COG1352 CheR Methylase of chem 96.5 0.028 6.1E-07 43.7 8.9 131 36-171 62-245 (268)
272 PF03141 Methyltransf_29: Puta 96.4 0.002 4.3E-08 53.6 2.3 92 66-166 120-218 (506)
273 PF07757 AdoMet_MTase: Predict 96.4 0.005 1.1E-07 40.7 3.4 32 64-95 59-90 (112)
274 COG0500 SmtA SAM-dependent met 96.3 0.036 7.8E-07 38.0 8.1 73 67-141 52-131 (257)
275 KOG3115|consensus 96.3 0.008 1.7E-07 44.4 4.6 63 64-126 61-131 (249)
276 KOG2360|consensus 96.3 0.018 4E-07 46.4 6.9 84 64-148 214-303 (413)
277 PF02086 MethyltransfD12: D12 95.9 0.016 3.4E-07 44.6 5.1 50 52-101 7-58 (260)
278 KOG1709|consensus 95.9 0.053 1.1E-06 40.6 7.1 73 62-136 100-176 (271)
279 KOG1253|consensus 95.8 0.0041 8.8E-08 51.6 1.5 79 62-141 108-194 (525)
280 KOG3987|consensus 95.8 0.003 6.5E-08 46.8 0.6 62 42-103 87-152 (288)
281 KOG0919|consensus 95.8 0.0092 2E-07 45.3 3.1 80 65-146 4-86 (338)
282 KOG1269|consensus 95.8 0.016 3.6E-07 47.0 4.6 107 59-167 106-216 (364)
283 PF04989 CmcI: Cephalosporin h 95.6 0.038 8.2E-07 41.1 5.5 66 56-124 26-97 (206)
284 PF07942 N2227: N2227-like pro 95.6 0.045 9.8E-07 42.5 6.2 37 64-100 57-93 (270)
285 KOG0822|consensus 95.5 0.069 1.5E-06 45.0 7.3 82 52-135 351-445 (649)
286 PF04672 Methyltransf_19: S-ad 94.9 0.065 1.4E-06 41.5 5.2 59 65-124 70-133 (267)
287 KOG2651|consensus 94.8 0.12 2.6E-06 41.9 6.6 39 64-102 154-193 (476)
288 PF03686 UPF0146: Uncharacteri 94.4 0.2 4.2E-06 34.3 6.0 77 52-141 3-83 (127)
289 PTZ00357 methyltransferase; Pr 94.2 0.22 4.7E-06 43.7 7.1 60 66-125 703-776 (1072)
290 PF07669 Eco57I: Eco57I restri 94.1 0.064 1.4E-06 35.6 3.3 51 129-182 2-54 (106)
291 KOG0821|consensus 94.0 0.38 8.3E-06 36.3 7.4 77 64-142 51-142 (326)
292 KOG3178|consensus 93.9 0.17 3.7E-06 40.5 5.7 64 65-135 179-242 (342)
293 KOG2352|consensus 93.8 0.27 5.8E-06 41.1 6.8 80 54-135 38-120 (482)
294 PF07279 DUF1442: Protein of u 93.7 1 2.3E-05 33.7 9.2 73 64-136 42-122 (218)
295 PF10237 N6-adenineMlase: Prob 93.6 0.42 9E-06 34.3 6.8 80 51-141 13-98 (162)
296 PF04378 RsmJ: Ribosomal RNA s 93.5 0.06 1.3E-06 41.3 2.4 73 68-143 62-139 (245)
297 COG1565 Uncharacterized conser 93.2 0.73 1.6E-05 37.3 8.2 45 64-108 78-132 (370)
298 COG2961 ComJ Protein involved 93.1 0.23 5E-06 38.0 4.9 73 68-143 93-170 (279)
299 PRK13699 putative methylase; P 93.0 0.045 9.8E-07 41.5 1.2 26 115-140 3-31 (227)
300 PRK11524 putative methyltransf 93.0 0.054 1.2E-06 42.5 1.6 29 113-141 8-39 (284)
301 COG1743 Adenine-specific DNA m 93.0 0.13 2.8E-06 45.3 3.9 42 64-105 91-132 (875)
302 KOG3924|consensus 93.0 0.28 6.1E-06 40.0 5.5 89 49-137 177-280 (419)
303 KOG2920|consensus 92.8 0.098 2.1E-06 40.7 2.7 35 64-98 117-152 (282)
304 COG2933 Predicted SAM-dependen 92.8 0.36 7.7E-06 37.4 5.6 74 60-141 208-282 (358)
305 PF05050 Methyltransf_21: Meth 92.3 0.64 1.4E-05 32.7 6.4 51 69-119 1-59 (167)
306 KOG1201|consensus 92.1 1 2.2E-05 35.5 7.5 71 64-137 38-122 (300)
307 KOG1596|consensus 91.8 0.56 1.2E-05 35.9 5.6 89 47-138 135-235 (317)
308 PF02254 TrkA_N: TrkA-N domain 91.7 0.67 1.4E-05 30.8 5.6 57 72-136 4-69 (116)
309 PF02636 Methyltransf_28: Puta 91.7 0.42 9E-06 36.8 5.1 43 65-107 20-72 (252)
310 KOG2793|consensus 91.2 1.7 3.7E-05 33.4 7.8 77 64-141 87-175 (248)
311 COG3510 CmcI Cephalosporin hyd 91.1 0.55 1.2E-05 34.7 4.8 62 56-124 63-130 (237)
312 PRK06194 hypothetical protein; 91.0 2.5 5.4E-05 32.7 8.9 75 64-141 6-95 (287)
313 KOG2798|consensus 89.8 0.93 2E-05 36.1 5.3 37 64-100 151-187 (369)
314 KOG1099|consensus 89.8 0.31 6.6E-06 37.0 2.6 61 64-136 42-122 (294)
315 KOG2352|consensus 89.7 0.15 3.2E-06 42.7 1.0 72 64-136 296-377 (482)
316 PRK05854 short chain dehydroge 89.5 4.6 0.0001 32.0 9.4 75 64-139 14-103 (313)
317 PRK05867 short chain dehydroge 89.0 3.9 8.5E-05 31.0 8.4 74 64-140 9-97 (253)
318 KOG2782|consensus 89.0 0.33 7.2E-06 36.5 2.3 89 54-143 32-132 (303)
319 PRK07478 short chain dehydroge 88.9 4.8 0.0001 30.4 8.9 73 64-139 6-93 (254)
320 PF11968 DUF3321: Putative met 88.7 1 2.3E-05 33.8 4.8 73 50-139 32-114 (219)
321 PRK12826 3-ketoacyl-(acyl-carr 88.5 5.9 0.00013 29.7 9.1 75 64-141 6-95 (251)
322 PRK13394 3-hydroxybutyrate deh 88.5 4.9 0.00011 30.4 8.7 74 64-140 7-95 (262)
323 PRK07523 gluconate 5-dehydroge 88.5 5.9 0.00013 30.0 9.1 74 64-140 10-98 (255)
324 PRK07890 short chain dehydroge 88.4 5.5 0.00012 30.1 8.9 73 64-139 5-92 (258)
325 KOG1098|consensus 88.1 0.5 1.1E-05 40.8 3.0 36 60-95 41-79 (780)
326 PRK07063 short chain dehydroge 88.1 6.1 0.00013 30.0 9.0 75 64-139 7-96 (260)
327 PRK06197 short chain dehydroge 88.1 7.2 0.00016 30.6 9.6 75 64-139 16-105 (306)
328 PRK05876 short chain dehydroge 88.0 5.9 0.00013 30.7 8.9 74 64-140 6-94 (275)
329 KOG0024|consensus 87.9 2.1 4.5E-05 34.3 6.1 43 61-103 167-212 (354)
330 COG5379 BtaA S-adenosylmethion 87.7 1.8 3.8E-05 34.3 5.5 45 61-105 61-105 (414)
331 COG0338 Dam Site-specific DNA 87.6 0.67 1.5E-05 36.2 3.3 33 113-145 156-190 (274)
332 PRK06172 short chain dehydroge 87.6 6.4 0.00014 29.7 8.8 73 64-139 7-94 (253)
333 KOG1331|consensus 87.6 0.34 7.3E-06 37.8 1.6 75 59-143 41-117 (293)
334 PF11899 DUF3419: Protein of u 87.5 2.7 5.9E-05 34.5 6.9 46 60-105 32-77 (380)
335 COG1255 Uncharacterized protei 87.3 3.5 7.6E-05 27.8 6.0 70 53-135 4-76 (129)
336 PRK06124 gluconate 5-dehydroge 87.2 7.6 0.00017 29.3 9.0 74 64-140 11-99 (256)
337 PRK08339 short chain dehydroge 87.1 8.2 0.00018 29.6 9.2 73 64-138 8-94 (263)
338 PRK09496 trkA potassium transp 87.0 2.4 5.2E-05 35.3 6.6 67 64-138 231-306 (453)
339 PRK07102 short chain dehydroge 86.8 5.2 0.00011 30.0 7.8 72 66-139 3-86 (243)
340 PRK07062 short chain dehydroge 86.4 8.9 0.00019 29.2 9.0 75 64-139 8-97 (265)
341 PRK06949 short chain dehydroge 86.2 9.8 0.00021 28.7 9.1 73 64-139 9-96 (258)
342 COG1064 AdhP Zn-dependent alco 86.0 1.2 2.5E-05 36.0 3.9 44 61-104 164-209 (339)
343 PRK10669 putative cation:proto 85.9 2.3 5E-05 36.7 6.0 56 72-135 423-487 (558)
344 COG0569 TrkA K+ transport syst 85.7 3.4 7.4E-05 31.3 6.2 57 73-135 7-72 (225)
345 PRK06125 short chain dehydroge 85.6 11 0.00023 28.7 9.1 74 64-139 7-91 (259)
346 PRK07666 fabG 3-ketoacyl-(acyl 85.6 12 0.00026 28.0 9.2 74 64-140 7-95 (239)
347 PRK07097 gluconate 5-dehydroge 85.4 10 0.00022 28.9 8.9 75 64-140 10-98 (265)
348 PRK07576 short chain dehydroge 85.2 12 0.00025 28.7 9.2 72 64-138 9-95 (264)
349 COG3392 Adenine-specific DNA m 85.1 1.1 2.5E-05 34.7 3.3 31 63-93 27-57 (330)
350 PRK08862 short chain dehydroge 85.1 8.7 0.00019 28.9 8.2 72 64-137 5-91 (227)
351 PRK06139 short chain dehydroge 85.1 8.9 0.00019 30.7 8.7 74 64-140 7-95 (330)
352 PRK09291 short chain dehydroge 85.0 6.6 0.00014 29.6 7.7 73 65-140 3-84 (257)
353 PRK08217 fabG 3-ketoacyl-(acyl 84.9 11 0.00024 28.2 8.9 73 64-139 5-92 (253)
354 PRK05866 short chain dehydroge 84.9 11 0.00024 29.4 9.1 73 64-139 40-127 (293)
355 PRK07035 short chain dehydroge 84.8 11 0.00024 28.3 8.9 73 64-139 8-95 (252)
356 PRK03659 glutathione-regulated 84.7 2.7 5.8E-05 36.7 5.9 56 72-135 406-470 (601)
357 PRK08251 short chain dehydroge 84.7 15 0.00032 27.6 9.4 74 65-139 3-91 (248)
358 PRK07904 short chain dehydroge 84.2 7.7 0.00017 29.6 7.7 75 63-139 7-97 (253)
359 PRK06181 short chain dehydroge 84.1 13 0.00029 28.1 9.0 69 66-137 3-86 (263)
360 TIGR00571 dam DNA adenine meth 83.6 1.4 3E-05 34.3 3.4 29 113-141 155-184 (266)
361 PRK08303 short chain dehydroge 83.6 9.9 0.00021 30.0 8.3 71 64-137 8-103 (305)
362 PRK08277 D-mannonate oxidoredu 83.5 14 0.0003 28.3 9.0 73 64-139 10-97 (278)
363 TIGR03206 benzo_BadH 2-hydroxy 83.3 13 0.00028 27.9 8.6 74 64-140 3-91 (250)
364 PRK08589 short chain dehydroge 83.1 13 0.00028 28.6 8.6 73 64-140 6-93 (272)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 82.8 1.8 3.8E-05 31.8 3.5 26 77-102 15-40 (185)
366 PRK06113 7-alpha-hydroxysteroi 82.7 15 0.00033 27.7 8.9 74 64-140 11-99 (255)
367 PRK07791 short chain dehydroge 82.7 13 0.00028 29.0 8.5 74 64-140 6-103 (286)
368 PRK09242 tropinone reductase; 82.5 18 0.0004 27.3 9.2 76 64-140 9-99 (257)
369 PRK07533 enoyl-(acyl carrier p 82.3 13 0.00029 28.3 8.4 73 64-139 10-98 (258)
370 COG4889 Predicted helicase [Ge 82.2 2.8 6.2E-05 38.2 5.0 21 64-84 846-866 (1518)
371 PRK03562 glutathione-regulated 82.1 3.6 7.8E-05 36.1 5.6 61 65-135 401-470 (621)
372 PRK06196 oxidoreductase; Provi 82.0 14 0.0003 29.2 8.6 69 64-139 26-109 (315)
373 PRK05650 short chain dehydroge 82.0 11 0.00024 28.8 7.9 71 67-140 3-88 (270)
374 PRK07231 fabG 3-ketoacyl-(acyl 82.0 9.4 0.0002 28.6 7.4 72 64-139 5-91 (251)
375 PRK08703 short chain dehydroge 81.9 16 0.00035 27.3 8.6 73 64-138 6-96 (239)
376 PRK12939 short chain dehydroge 81.9 14 0.00029 27.7 8.3 73 64-139 7-94 (250)
377 TIGR00571 dam DNA adenine meth 81.8 3.4 7.3E-05 32.1 4.9 48 51-100 12-60 (266)
378 PRK07109 short chain dehydroge 81.8 16 0.00034 29.3 8.9 73 64-139 8-95 (334)
379 PRK07454 short chain dehydroge 81.8 18 0.0004 26.9 8.9 74 64-140 6-94 (241)
380 PRK06940 short chain dehydroge 81.4 19 0.00041 27.8 9.0 71 66-140 4-87 (275)
381 PRK07677 short chain dehydroge 80.8 15 0.00033 27.7 8.2 71 65-138 2-87 (252)
382 PRK12429 3-hydroxybutyrate deh 80.5 11 0.00023 28.4 7.3 74 64-140 4-92 (258)
383 PRK06200 2,3-dihydroxy-2,3-dih 80.4 14 0.0003 28.1 7.9 71 64-140 6-91 (263)
384 PRK08340 glucose-1-dehydrogena 80.3 13 0.00028 28.2 7.7 69 67-139 3-86 (259)
385 PRK12481 2-deoxy-D-gluconate 3 80.2 15 0.00034 27.7 8.1 72 64-140 8-94 (251)
386 cd08283 FDH_like_1 Glutathione 80.2 4.9 0.00011 32.8 5.6 43 62-104 183-228 (386)
387 PRK07024 short chain dehydroge 80.0 9.9 0.00021 28.8 7.0 69 66-138 4-87 (257)
388 PF02737 3HCDH_N: 3-hydroxyacy 80.0 5.8 0.00013 28.9 5.4 38 69-106 4-43 (180)
389 KOG1562|consensus 79.9 3.4 7.3E-05 32.7 4.2 77 60-136 118-202 (337)
390 PRK09424 pntA NAD(P) transhydr 79.8 4.9 0.00011 34.4 5.5 40 64-103 165-206 (509)
391 KOG3201|consensus 79.7 2.2 4.7E-05 30.8 2.9 85 51-135 15-109 (201)
392 PRK08213 gluconate 5-dehydroge 79.7 19 0.00041 27.3 8.4 74 64-140 12-100 (259)
393 PRK06720 hypothetical protein; 79.6 20 0.00044 25.7 9.0 75 64-140 16-104 (169)
394 PRK05599 hypothetical protein; 79.5 16 0.00035 27.6 8.0 71 67-139 3-87 (246)
395 PRK05855 short chain dehydroge 79.4 13 0.00027 31.8 8.1 73 64-139 315-402 (582)
396 PRK07326 short chain dehydroge 79.3 16 0.00035 27.1 7.8 70 64-137 6-90 (237)
397 PRK08085 gluconate 5-dehydroge 79.2 23 0.0005 26.7 8.8 74 64-140 9-97 (254)
398 PRK07774 short chain dehydroge 79.2 15 0.00033 27.5 7.8 74 64-140 6-94 (250)
399 KOG1205|consensus 79.0 17 0.00036 28.7 7.9 80 64-143 12-105 (282)
400 PRK12384 sorbitol-6-phosphate 79.0 25 0.00055 26.5 8.9 75 65-140 3-92 (259)
401 PRK07453 protochlorophyllide o 78.7 19 0.00042 28.4 8.4 73 64-139 6-93 (322)
402 PRK08643 acetoin reductase; Va 78.6 26 0.00056 26.4 9.5 73 65-140 3-90 (256)
403 PRK08945 putative oxoacyl-(acy 78.6 25 0.00055 26.3 9.2 73 64-138 12-101 (247)
404 TIGR02415 23BDH acetoin reduct 78.5 23 0.00051 26.5 8.6 67 73-141 8-89 (254)
405 COG0338 Dam Site-specific DNA 78.5 1.7 3.6E-05 34.0 2.2 49 51-100 13-61 (274)
406 PLN03209 translocon at the inn 78.5 14 0.00031 32.2 7.9 73 64-137 80-167 (576)
407 PRK05717 oxidoreductase; Valid 77.9 18 0.00039 27.3 7.8 71 64-140 10-95 (255)
408 PRK06914 short chain dehydroge 77.9 15 0.00032 28.2 7.4 76 65-141 4-93 (280)
409 PF02086 MethyltransfD12: D12 77.9 4.1 8.9E-05 31.1 4.3 34 113-146 159-194 (260)
410 PF05206 TRM13: Methyltransfer 77.2 4.9 0.00011 31.2 4.4 64 61-125 16-86 (259)
411 PRK08265 short chain dehydroge 77.2 19 0.0004 27.5 7.8 70 64-139 6-90 (261)
412 PLN02989 cinnamyl-alcohol dehy 76.9 15 0.00033 28.9 7.4 74 64-138 5-86 (325)
413 PRK06079 enoyl-(acyl carrier p 76.6 18 0.00039 27.4 7.5 72 64-140 7-94 (252)
414 PLN02780 ketoreductase/ oxidor 76.6 19 0.0004 28.7 7.8 75 64-139 53-142 (320)
415 PRK05565 fabG 3-ketoacyl-(acyl 76.2 19 0.00042 26.7 7.6 73 65-140 6-94 (247)
416 PRK07814 short chain dehydroge 76.1 27 0.00059 26.5 8.4 72 64-138 10-96 (263)
417 PRK10904 DNA adenine methylase 75.8 3.5 7.6E-05 32.2 3.4 29 113-141 157-186 (271)
418 PF00106 adh_short: short chai 75.7 20 0.00042 24.9 7.1 70 70-141 5-92 (167)
419 KOG2356|consensus 75.7 1.5 3.2E-05 34.5 1.2 32 112-143 162-198 (366)
420 PRK09496 trkA potassium transp 75.6 12 0.00026 31.2 6.7 58 72-136 6-72 (453)
421 PF01234 NNMT_PNMT_TEMT: NNMT/ 75.5 3.8 8.3E-05 31.7 3.4 43 64-106 57-100 (256)
422 PF02719 Polysacc_synt_2: Poly 75.3 12 0.00026 29.6 6.2 72 70-141 3-89 (293)
423 PRK07832 short chain dehydroge 75.3 22 0.00048 27.2 7.7 68 71-139 6-88 (272)
424 PF00107 ADH_zinc_N: Zinc-bind 75.1 4.3 9.4E-05 27.2 3.4 31 73-103 1-32 (130)
425 PRK05653 fabG 3-ketoacyl-(acyl 75.0 27 0.00059 25.8 8.1 74 64-140 5-93 (246)
426 PRK08415 enoyl-(acyl carrier p 74.9 34 0.00074 26.4 8.7 74 64-140 5-94 (274)
427 PRK07889 enoyl-(acyl carrier p 74.6 17 0.00037 27.7 6.9 72 64-140 7-96 (256)
428 PRK06182 short chain dehydroge 74.6 25 0.00055 26.9 7.9 69 64-141 3-86 (273)
429 PRK09186 flagellin modificatio 74.5 30 0.00065 26.0 8.2 73 64-137 4-91 (256)
430 PRK06138 short chain dehydroge 74.4 24 0.00053 26.4 7.7 73 64-140 5-92 (252)
431 PRK05872 short chain dehydroge 74.3 26 0.00056 27.3 8.0 73 64-140 9-96 (296)
432 TIGR01289 LPOR light-dependent 74.0 31 0.00067 27.3 8.4 73 64-139 3-91 (314)
433 PF05063 MT-A70: MT-A70 ; Int 73.9 2.5 5.4E-05 30.7 2.0 15 130-144 1-15 (176)
434 PRK10904 DNA adenine methylase 73.8 6.8 0.00015 30.5 4.5 48 51-100 15-62 (271)
435 KOG3350|consensus 73.5 29 0.00062 25.5 7.1 78 53-144 63-150 (217)
436 KOG0725|consensus 73.5 41 0.00089 26.2 9.2 78 64-141 8-101 (270)
437 TIGR01963 PHB_DH 3-hydroxybuty 73.0 24 0.00052 26.4 7.3 67 71-139 7-88 (255)
438 PRK07041 short chain dehydroge 72.8 30 0.00066 25.5 7.8 65 72-139 4-79 (230)
439 COG0300 DltE Short-chain dehyd 72.8 43 0.00094 26.1 10.2 78 64-143 6-98 (265)
440 PRK08594 enoyl-(acyl carrier p 72.4 31 0.00067 26.3 7.9 73 64-140 7-98 (257)
441 PRK06701 short chain dehydroge 72.2 37 0.00079 26.5 8.4 73 64-139 46-134 (290)
442 KOG1209|consensus 72.2 24 0.00052 26.9 6.7 38 63-100 6-47 (289)
443 PRK08993 2-deoxy-D-gluconate 3 72.1 33 0.00072 25.9 8.0 72 64-140 10-96 (253)
444 PRK12823 benD 1,6-dihydroxycyc 72.1 38 0.00083 25.5 8.3 71 64-138 8-93 (260)
445 PRK07819 3-hydroxybutyryl-CoA 71.9 14 0.0003 29.0 5.9 40 66-105 7-48 (286)
446 PLN02668 indole-3-acetate carb 71.8 3.1 6.8E-05 34.2 2.3 20 64-83 64-83 (386)
447 PLN00015 protochlorophyllide r 71.5 25 0.00054 27.7 7.3 66 72-139 4-85 (308)
448 PRK07831 short chain dehydroge 71.3 42 0.00092 25.4 9.0 76 64-140 17-108 (262)
449 PF03514 GRAS: GRAS domain fam 71.2 57 0.0012 26.8 11.3 117 64-186 111-249 (374)
450 KOG0022|consensus 70.9 15 0.00033 29.6 5.7 45 59-103 188-235 (375)
451 PRK07067 sorbitol dehydrogenas 70.2 27 0.00059 26.3 7.1 71 64-140 6-91 (257)
452 PLN02253 xanthoxin dehydrogena 70.2 29 0.00063 26.6 7.4 72 64-139 18-104 (280)
453 PRK05786 fabG 3-ketoacyl-(acyl 70.1 42 0.0009 24.8 8.3 71 64-138 5-90 (238)
454 KOG1208|consensus 69.9 38 0.00082 27.1 8.0 73 64-136 35-121 (314)
455 COG1748 LYS9 Saccharopine dehy 69.7 20 0.00044 29.6 6.5 72 65-143 2-83 (389)
456 COG4301 Uncharacterized conser 69.6 52 0.0011 25.7 8.2 59 64-124 79-145 (321)
457 COG1062 AdhC Zn-dependent alco 69.5 16 0.00035 29.6 5.7 43 61-103 183-228 (366)
458 PRK12743 oxidoreductase; Provi 69.3 38 0.00082 25.6 7.7 73 65-140 3-91 (256)
459 PLN02662 cinnamyl-alcohol dehy 69.1 16 0.00034 28.7 5.8 74 64-138 4-85 (322)
460 PRK06935 2-deoxy-D-gluconate 3 69.0 47 0.001 25.0 8.2 73 64-140 15-102 (258)
461 PRK08267 short chain dehydroge 68.7 23 0.00051 26.7 6.5 71 66-141 3-89 (260)
462 cd05564 PTS_IIB_chitobiose_lic 68.6 9.7 0.00021 24.6 3.7 52 70-139 4-56 (96)
463 PRK07984 enoyl-(acyl carrier p 68.4 47 0.001 25.4 8.2 74 64-140 6-95 (262)
464 PRK06057 short chain dehydroge 67.9 38 0.00083 25.5 7.5 68 64-139 7-89 (255)
465 PRK07074 short chain dehydroge 67.6 38 0.00082 25.5 7.4 70 66-140 4-88 (257)
466 cd00423 Pterin_binding Pterin 67.4 36 0.00077 26.3 7.2 36 40-75 9-48 (258)
467 PRK07201 short chain dehydroge 67.3 46 0.001 29.2 8.7 74 64-140 371-459 (657)
468 PRK08690 enoyl-(acyl carrier p 67.3 49 0.0011 25.2 8.0 74 64-140 6-95 (261)
469 TIGR03325 BphB_TodD cis-2,3-di 66.9 35 0.00076 25.9 7.2 69 64-138 5-88 (262)
470 PRK05875 short chain dehydroge 66.9 54 0.0012 25.0 8.4 74 64-138 7-95 (276)
471 PRK08226 short chain dehydroge 66.8 53 0.0012 24.8 8.6 73 64-140 6-93 (263)
472 COG1063 Tdh Threonine dehydrog 66.6 15 0.00033 29.7 5.3 41 64-104 169-212 (350)
473 PF10354 DUF2431: Domain of un 66.3 24 0.00053 25.3 5.7 69 72-141 3-87 (166)
474 PRK10538 malonic semialdehyde 65.9 31 0.00067 25.9 6.6 63 71-138 6-83 (248)
475 PRK08293 3-hydroxybutyryl-CoA 65.6 19 0.00042 28.1 5.5 40 66-105 5-46 (287)
476 PRK07825 short chain dehydroge 65.4 53 0.0011 25.0 7.9 69 64-139 5-88 (273)
477 PRK08628 short chain dehydroge 65.4 53 0.0012 24.7 7.9 72 64-139 7-93 (258)
478 PLN02650 dihydroflavonol-4-red 64.8 23 0.00051 28.3 6.0 70 69-138 9-86 (351)
479 PRK07066 3-hydroxybutyryl-CoA 64.6 24 0.00053 28.3 6.0 41 65-105 8-50 (321)
480 PRK15057 UDP-glucose 6-dehydro 64.6 12 0.00026 30.9 4.3 31 73-103 7-40 (388)
481 PRK01438 murD UDP-N-acetylmura 64.5 68 0.0015 27.0 9.0 68 64-137 16-86 (480)
482 COG0677 WecC UDP-N-acetyl-D-ma 64.5 7.1 0.00015 32.3 2.9 24 78-101 25-48 (436)
483 PRK07424 bifunctional sterol d 64.5 36 0.00077 28.3 7.1 70 64-139 178-255 (406)
484 PRK14106 murD UDP-N-acetylmura 64.3 46 0.001 27.7 7.9 71 64-139 5-78 (450)
485 cd05188 MDR Medium chain reduc 64.3 24 0.00052 26.4 5.8 41 62-102 133-175 (271)
486 PRK10310 PTS system galactitol 64.2 34 0.00073 22.0 5.6 55 70-141 7-62 (94)
487 PRK09072 short chain dehydroge 64.1 56 0.0012 24.7 7.8 73 64-140 5-91 (263)
488 KOG1207|consensus 63.9 28 0.0006 25.7 5.5 56 64-124 7-65 (245)
489 PF05575 V_cholerae_RfbT: Vibr 63.9 10 0.00022 27.5 3.3 56 53-108 69-126 (286)
490 PRK07060 short chain dehydroge 63.7 58 0.0013 24.1 8.5 70 64-141 9-89 (245)
491 PRK07069 short chain dehydroge 63.7 51 0.0011 24.6 7.4 69 72-140 6-90 (251)
492 TIGR01832 kduD 2-deoxy-D-gluco 63.6 59 0.0013 24.2 8.5 72 64-140 5-91 (248)
493 TIGR03201 dearomat_had 6-hydro 63.5 23 0.00051 28.3 5.8 41 62-102 165-207 (349)
494 PRK06505 enoyl-(acyl carrier p 63.4 66 0.0014 24.7 8.3 73 64-139 7-95 (271)
495 PRK08177 short chain dehydroge 63.4 24 0.00052 26.1 5.5 63 70-139 6-81 (225)
496 cd08254 hydroxyacyl_CoA_DH 6-h 63.3 25 0.00053 27.6 5.8 42 61-102 163-206 (338)
497 TIGR02632 RhaD_aldol-ADH rhamn 63.1 70 0.0015 28.5 9.0 75 64-140 414-504 (676)
498 PRK09260 3-hydroxybutyryl-CoA 62.6 20 0.00044 28.0 5.2 38 67-104 4-43 (288)
499 PRK12748 3-ketoacyl-(acyl-carr 62.5 64 0.0014 24.3 8.6 73 64-139 5-105 (256)
500 PRK08063 enoyl-(acyl carrier p 62.3 60 0.0013 24.2 7.6 72 64-138 4-91 (250)
No 1
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.90 E-value=1.7e-23 Score=148.80 Aligned_cols=122 Identities=54% Similarity=0.976 Sum_probs=94.8
Q ss_pred CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC----ccEEEECCCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ----GDVVFLSPPWG 140 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~D~v~~npp~~ 140 (189)
..|+|++||.|+.++.+|+...+|+++|+++..++.|++|+...|+.++++++++|+.+..+... +|+|+++|||+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 36899999999999999999999999999999999999999999998899999999998763222 89999999999
Q ss_pred CCcccc-ccccccccC-cCCCCchhHHHHhhhcCCceEEEcCCCCCcccc
Q psy13204 141 GPEYAR-SSFSIDNIF-PEQGGGRRLFQVARGISPNVGYYLPRTSDVFEL 188 (189)
Q Consensus 141 ~~~~~~-~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~~~l 188 (189)
+.+|.+ ..+++...+ |- ++..++...+.++++.+++|||++|+++|
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~--~~~~l~~~~~~~t~nv~l~LPRn~dl~ql 128 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPF--NLEDLLKAARKITPNVVLFLPRNSDLNQL 128 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS----HHHHHHHHHHH-S-EEEEEETTB-HHHH
T ss_pred CccccccCccCHHHccCCC--CHHHHHHHHHhhCCCEEEEeCCCCCHHHH
Confidence 999998 567774444 53 47799999999999999999999999876
No 2
>KOG2730|consensus
Probab=99.86 E-value=2.2e-22 Score=146.47 Aligned_cols=155 Identities=51% Similarity=0.914 Sum_probs=136.7
Q ss_pred hhhcCCcccCCCcccccChHHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204 32 LTLADADNDATESWYSVTPEKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 108 (189)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (189)
..+.++..++++.||+.+|+.++..++..... ...|+|.+||.|+.++.++..+..|+++|++|.-+..|++|++..
T Consensus 60 srfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiY 139 (263)
T KOG2730|consen 60 SRFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVY 139 (263)
T ss_pred HhhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceee
Confidence 45556788999999999999888887765443 678999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCcccCCCCC-----CccEEEECCCCCCCcccc-ccccccccCcCCCCchhHHHHhhhcCCceEEEcCCC
Q psy13204 109 GVSHKIQFIQGDFFALAPSL-----QGDVVFLSPPWGGPEYAR-SSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT 182 (189)
Q Consensus 109 ~~~~~~~~~~~d~~~~~~~~-----~~D~v~~npp~~~~~~~~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~ 182 (189)
|++++++++++|.++..... .+|++++-|||++.++.. ...|++..+++ .+..++.....++|..+.|||++
T Consensus 140 GI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p--~~~~~fk~s~kispnv~~flprn 217 (263)
T KOG2730|consen 140 GVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKP--MGTKIFKSSLKISPNVAYFLPRN 217 (263)
T ss_pred cCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcch--hHHHHHHhhhhcCcchhhhCCcc
Confidence 99999999999999876322 467999999999999998 66789888865 37799999999999999999999
Q ss_pred CCcccc
Q psy13204 183 SDVFEL 188 (189)
Q Consensus 183 ~~~~~l 188 (189)
.+.++|
T Consensus 218 tdv~ql 223 (263)
T KOG2730|consen 218 TDVNQL 223 (263)
T ss_pred hhHHHH
Confidence 998765
No 3
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.73 E-value=4.7e-17 Score=131.58 Aligned_cols=115 Identities=21% Similarity=0.350 Sum_probs=92.7
Q ss_pred cchhhhhhhcC-CcccCCCcccccChHHHH---HHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204 26 GLEYFELTLAD-ADNDATESWYSVTPEKVA---QHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99 (189)
Q Consensus 26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~ 99 (189)
|++++.+.+.+ .+.+++.+|+|.++.... +.+...+. .+.+|+|+|||+|.+++.++..+.+|+|+|+++.+++
T Consensus 190 G~~~i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~ 269 (374)
T TIGR02085 190 EQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIA 269 (374)
T ss_pred CCCeeEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHH
Confidence 45555555544 588899999999985433 22333332 3679999999999999999988899999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCCCC
Q psy13204 100 LAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGG 141 (189)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~~~ 141 (189)
.|++|++.+++ .+++++++|+.+... ...||+|++|||+.+
T Consensus 270 ~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 270 CAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred HHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 99999999998 489999999987652 246999999999975
No 4
>PHA03412 putative methyltransferase; Provisional
Probab=99.72 E-value=1.7e-16 Score=118.86 Aligned_cols=144 Identities=14% Similarity=0.230 Sum_probs=98.5
Q ss_pred hhhhhhhcCCcccC---CCcccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh-----CCeEEEEeCCHHHHH
Q psy13204 28 EYFELTLADADNDA---TESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLR 99 (189)
Q Consensus 28 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-----~~~v~~vD~~~~~~~ 99 (189)
.+..+++.++.... ...|| ||..+++.++.....+.+|||+|||+|.+++.+++. ..+++++|+++.+++
T Consensus 13 ~f~~~n~~~~~~~~~~~~GqFf--TP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~ 90 (241)
T PHA03412 13 LFIIENFHEGAFTNNSELGAFF--TPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK 90 (241)
T ss_pred HHHHhhcccccccccccCCccC--CCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH
Confidence 34455555432222 23444 555666666433333789999999999999999864 358999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCccccccccccccCcC-CCCchhHHHHhhhcCCceEEE
Q psy13204 100 LAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPE-QGGGRRLFQVARGISPNVGYY 178 (189)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~-~~~g~~~~~~~~~~~~~~~~~ 178 (189)
.|++|.. ++.++++|+.......+||+|++||||......+. ..... ..-...++..+.++.+...++
T Consensus 91 ~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~-----~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 91 LGKRIVP------EATWINADALTTEFDTLFDMAISNPPFGKIKTSDF-----KGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred HHHhhcc------CCEEEEcchhcccccCCccEEEECCCCCCcccccc-----CCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 9998853 57899999987654568999999999997442221 01111 000224666666788888889
Q ss_pred cCCCCC
Q psy13204 179 LPRTSD 184 (189)
Q Consensus 179 lp~~~~ 184 (189)
||+++-
T Consensus 160 LP~~~~ 165 (241)
T PHA03412 160 IPQMSA 165 (241)
T ss_pred eCcccc
Confidence 999863
No 5
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.71 E-value=5.7e-17 Score=128.44 Aligned_cols=116 Identities=20% Similarity=0.309 Sum_probs=92.7
Q ss_pred cchhhhhhhcC-CcccCCCcccccChHH---HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204 26 GLEYFELTLAD-ADNDATESWYSVTPEK---VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99 (189)
Q Consensus 26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~ 99 (189)
|.+++.+.+.+ .+.+.+.+|+|.++.. +.+.+.+.+. .+.+|||+|||+|.+++.+++.+.+|+|+|+++.+++
T Consensus 130 g~~~~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~ 209 (315)
T PRK03522 130 EQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIA 209 (315)
T ss_pred CCCeEEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 44455555544 5778899999998853 3333333332 3789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCC
Q psy13204 100 LAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~ 142 (189)
.|++|+..+++ .+++++++|+.++. ....||+|++|||+.+.
T Consensus 210 ~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~ 253 (315)
T PRK03522 210 CAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGI 253 (315)
T ss_pred HHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc
Confidence 99999999998 58999999998765 23479999999998763
No 6
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.7e-16 Score=113.83 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=79.0
Q ss_pred CcccCCCcccc-cChHHHHHHHHHhC--CC---CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204 37 ADNDATESWYS-VTPEKVAQHIASRC--KA---SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYG 109 (189)
Q Consensus 37 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~---~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~ 109 (189)
++.-+.....| .||..++..++... .. +..|+|+|||+|.+++.++..| .+|+|+|+++++++.+++|....+
T Consensus 13 ~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~ 92 (198)
T COG2263 13 GFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL 92 (198)
T ss_pred CCCCCCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC
Confidence 34444334433 35555555544332 11 7789999999999999999987 579999999999999999998844
Q ss_pred CCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 110 ~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
.++.++++|+.++ ...+|.+++||||+..
T Consensus 93 --g~v~f~~~dv~~~--~~~~dtvimNPPFG~~ 121 (198)
T COG2263 93 --GDVEFVVADVSDF--RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred --CceEEEEcchhhc--CCccceEEECCCCccc
Confidence 5899999999887 4678999999999863
No 7
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.69 E-value=3.3e-16 Score=113.68 Aligned_cols=101 Identities=23% Similarity=0.381 Sum_probs=76.6
Q ss_pred CCCcccccChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCe--EEEEeCCHHHHHHHHHHHHHhCCCCceEE
Q psy13204 41 ATESWYSVTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQF 116 (189)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 116 (189)
.+.-|.....+.-...+++.+. .+.+|||+|||+|.+++.+++.+.. |+++|+++.+++.+++|+..+++.. +++
T Consensus 7 ~~gvFs~~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~ 85 (170)
T PF05175_consen 7 HPGVFSPPRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEV 85 (170)
T ss_dssp ETTSTTTTSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEE
T ss_pred CCCeeCCCCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccc
Confidence 3434433444333333333332 3789999999999999999998554 9999999999999999999999953 999
Q ss_pred EeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 117 IQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 117 ~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
+++|..+..+..+||+|++|||++..
T Consensus 86 ~~~d~~~~~~~~~fD~Iv~NPP~~~~ 111 (170)
T PF05175_consen 86 VQSDLFEALPDGKFDLIVSNPPFHAG 111 (170)
T ss_dssp EESSTTTTCCTTCEEEEEE---SBTT
T ss_pred ccccccccccccceeEEEEccchhcc
Confidence 99999888777899999999998753
No 8
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.69 E-value=1.4e-16 Score=128.21 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=93.7
Q ss_pred ccchhhhhhh--cC---CcccCCCcccccChH---HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204 25 TGLEYFELTL--AD---ADNDATESWYSVTPE---KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP 95 (189)
Q Consensus 25 ~~~~~~~~~~--~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~ 95 (189)
+|++++.+.+ .+ .+..++.+|||.++. .+.+.+.+.+.. +..|||+|||+|.+++.+++...+|+|+|+++
T Consensus 159 ~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~ 238 (362)
T PRK05031 159 LDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISK 238 (362)
T ss_pred cCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCH
Confidence 4667776666 23 477789999999974 455555555542 35799999999999999999888999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----------------CCCccEEEECCCCCCC
Q psy13204 96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------------SLQGDVVFLSPPWGGP 142 (189)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------------~~~~D~v~~npp~~~~ 142 (189)
.+++.|++|+..+++ .+++++++|+.++.+ ...||+|++|||+.+.
T Consensus 239 ~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 239 PSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred HHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC
Confidence 999999999999998 589999999977531 1258999999999763
No 9
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.1e-16 Score=125.33 Aligned_cols=106 Identities=27% Similarity=0.521 Sum_probs=90.7
Q ss_pred CcccCCCcccccChHH---HHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204 37 ADNDATESWYSVTPEK---VAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 111 (189)
.+.++.++|||.++.. +..+..+.+.. +++++|++||.|.+++.+|+...+|+|+|+++++++.|++|++.+++
T Consensus 262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i- 340 (432)
T COG2265 262 SFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI- 340 (432)
T ss_pred EEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-
Confidence 4667788999999854 44444455543 67999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCcccCCCC----CCccEEEECCCCCCCc
Q psy13204 112 HKIQFIQGDFFALAPS----LQGDVVFLSPPWGGPE 143 (189)
Q Consensus 112 ~~~~~~~~d~~~~~~~----~~~D~v~~npp~~~~~ 143 (189)
.+++++.+++.++.+. ..+|+|+.|||+.+.+
T Consensus 341 ~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred CcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC
Confidence 4699999999998732 4789999999999865
No 10
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.67 E-value=2.3e-16 Score=107.32 Aligned_cols=79 Identities=30% Similarity=0.518 Sum_probs=69.8
Q ss_pred CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPW 139 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp~ 139 (189)
|.+|+|+|||+|.+++.+++.+ .+++|+|+++.+++.++.++...++..+++++++|+.+.. +..+||+|++||||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999998 8999999999999999999999988778999999998875 56789999999999
Q ss_pred CCC
Q psy13204 140 GGP 142 (189)
Q Consensus 140 ~~~ 142 (189)
...
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 863
No 11
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.67 E-value=1.9e-15 Score=124.97 Aligned_cols=105 Identities=23% Similarity=0.312 Sum_probs=88.1
Q ss_pred CcccCCCcccccChH---HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC
Q psy13204 37 ADNDATESWYSVTPE---KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 111 (189)
.+.+++.+|+|.++. .+.+.+.+.+. ++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|++|+..+++
T Consensus 266 ~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~- 344 (443)
T PRK13168 266 RLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL- 344 (443)
T ss_pred EEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-
Confidence 577889999999874 34445555443 478999999999999999999989999999999999999999999988
Q ss_pred CceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204 112 HKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 112 ~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~ 142 (189)
.+++++++|+.+.. ...+||+|++||||.+.
T Consensus 345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh
Confidence 57999999987643 23579999999999874
No 12
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.66 E-value=3.1e-16 Score=115.44 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=93.5
Q ss_pred CCCcccccChHHHHHHHHHhCC---CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEE
Q psy13204 41 ATESWYSVTPEKVAQHIASRCK---ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQF 116 (189)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~---~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 116 (189)
.......++.+.+.+.+...+. .+.+|||+|||+|.++++++.+|+ +|+++|.++.+++.+++|+..+++.+++++
T Consensus 24 p~~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 24 PPGGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence 3444555666666655555443 388999999999999999999876 799999999999999999999998657899
Q ss_pred EeCCcccCCC-----CCCccEEEECCCCCCCcccccc--ccccccCcCCCCchhHHHHhhh
Q psy13204 117 IQGDFFALAP-----SLQGDVVFLSPPWGGPEYARSS--FSIDNIFPEQGGGRRLFQVARG 170 (189)
Q Consensus 117 ~~~d~~~~~~-----~~~~D~v~~npp~~~~~~~~~~--~~~~~~l~~~~~g~~~~~~~~~ 170 (189)
+++|+.+... ...+|+|+.||||......... ..-..++++ +++.++++...
T Consensus 104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~--~~iiv~E~~~~ 162 (189)
T TIGR00095 104 VRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILED--TVLIVVEEDRE 162 (189)
T ss_pred EehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCC--CeEEEEEecCC
Confidence 9999976531 2248999999999863332211 122345554 46677766554
No 13
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.66 E-value=8.2e-16 Score=123.39 Aligned_cols=106 Identities=28% Similarity=0.486 Sum_probs=76.4
Q ss_pred CcccCCCcccccChHH---HHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204 37 ADNDATESWYSVTPEK---VAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSH 112 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 112 (189)
.+..++++|||.++.. +.+.+.+.++. +..++|++||+|.+++.+|+.+.+|+|+|+++.+++.|++|+..+++ .
T Consensus 166 ~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~ 244 (352)
T PF05958_consen 166 SFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-D 244 (352)
T ss_dssp EEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---
T ss_pred EEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-C
Confidence 3667889999999854 44555566654 44899999999999999999999999999999999999999999999 6
Q ss_pred ceEEEeCCcccCC-----------------CCCCccEEEECCCCCCCc
Q psy13204 113 KIQFIQGDFFALA-----------------PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 113 ~~~~~~~d~~~~~-----------------~~~~~D~v~~npp~~~~~ 143 (189)
+++++++++.++. ....+|+|+.|||+.+.+
T Consensus 245 n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 245 NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 8999998876542 122689999999999865
No 14
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.65 E-value=7.9e-16 Score=123.50 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=92.1
Q ss_pred ccchhhhhhh--cC---CcccCCCcccccChH---HHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204 25 TGLEYFELTL--AD---ADNDATESWYSVTPE---KVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP 95 (189)
Q Consensus 25 ~~~~~~~~~~--~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~ 95 (189)
+|++++.+.+ .+ .+..++.+|+|.++. .+.+.+.+.+.. +..|+|+|||+|.+++.+++...+|+|+|+++
T Consensus 150 ~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~ 229 (353)
T TIGR02143 150 LDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAK 229 (353)
T ss_pred cCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCH
Confidence 3666665555 23 466788999999974 445555555542 44799999999999999999888999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-----------------CCccEEEECCCCCCC
Q psy13204 96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-----------------LQGDVVFLSPPWGGP 142 (189)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~D~v~~npp~~~~ 142 (189)
++++.|++|+..+++ .+++++++|+.++.+. ..+|+|++|||+.+.
T Consensus 230 ~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 230 PSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred HHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCC
Confidence 999999999999998 4799999998875421 137999999998763
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.64 E-value=1.8e-15 Score=114.27 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp 138 (189)
..+|+|+|||+|..++.++++ ..+++|||+++++.+.|++|+..+++..+++++++|+.++. ...+||+|+||||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 789999999999999999988 37899999999999999999999999889999999999886 3346999999999
Q ss_pred CCCCccc
Q psy13204 139 WGGPEYA 145 (189)
Q Consensus 139 ~~~~~~~ 145 (189)
|......
T Consensus 125 yf~~~~~ 131 (248)
T COG4123 125 YFKQGSR 131 (248)
T ss_pred CCCCccc
Confidence 9987666
No 16
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.64 E-value=2.5e-15 Score=111.23 Aligned_cols=98 Identities=14% Similarity=0.243 Sum_probs=77.6
Q ss_pred CcccccChHHHHHHHHHhC---CCCCEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204 43 ESWYSVTPEKVAQHIASRC---KASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118 (189)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (189)
...+..+.+.+.+.+...+ ..+.+|||+|||+|.++++++ +...+|+++|+++.+++.+++|+..+++ .++++++
T Consensus 30 ~~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~ 108 (199)
T PRK10909 30 SPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVN 108 (199)
T ss_pred CCCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEE
Confidence 3445666666655554433 237899999999999999754 4457899999999999999999999988 4899999
Q ss_pred CCcccCCC--CCCccEEEECCCCCC
Q psy13204 119 GDFFALAP--SLQGDVVFLSPPWGG 141 (189)
Q Consensus 119 ~d~~~~~~--~~~~D~v~~npp~~~ 141 (189)
+|+.+..+ ...||+|++||||..
T Consensus 109 ~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 109 TNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred chHHHHHhhcCCCceEEEECCCCCC
Confidence 99987652 346999999999864
No 17
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.63 E-value=1.3e-15 Score=111.50 Aligned_cols=130 Identities=19% Similarity=0.333 Sum_probs=88.9
Q ss_pred ccCCCcccccChHHHHHHHHHhCC----CCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204 39 NDATESWYSVTPEKVAQHIASRCK----ASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHK 113 (189)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~ 113 (189)
.........+|++.+.+.+...+. .+.+|||++||+|.+++++..+|+ +|+.||.++.+++.+++|+...+..++
T Consensus 14 ~~p~~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~ 93 (183)
T PF03602_consen 14 KTPKGDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDK 93 (183)
T ss_dssp E-TT--TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGG
T ss_pred cCCCCCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcc
Confidence 334445566676666665555443 289999999999999999988865 799999999999999999999998667
Q ss_pred eEEEeCCcccCC-----CCCCccEEEECCCCCCCcc-cccccc--ccccCcCCCCchhHHHHhhh
Q psy13204 114 IQFIQGDFFALA-----PSLQGDVVFLSPPWGGPEY-ARSSFS--IDNIFPEQGGGRRLFQVARG 170 (189)
Q Consensus 114 ~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~~~-~~~~~~--~~~~l~~~~~g~~~~~~~~~ 170 (189)
+++++.|+.... ....||+|++||||..... .+.... -..++.+ +++.++|+...
T Consensus 94 ~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~--~~~ii~E~~~~ 156 (183)
T PF03602_consen 94 IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNE--DGLIIIEHSKK 156 (183)
T ss_dssp EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEE--EEEEEEEEETT
T ss_pred eeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCC--CEEEEEEecCC
Confidence 999999987665 4578999999999997653 332222 2355543 47777777655
No 18
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.63 E-value=2.2e-15 Score=124.30 Aligned_cols=115 Identities=23% Similarity=0.457 Sum_probs=91.9
Q ss_pred cchhhhhhhcC-CcccCCCcccccChHH---HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204 26 GLEYFELTLAD-ADNDATESWYSVTPEK---VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99 (189)
Q Consensus 26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~ 99 (189)
|.+++.+.+.+ .+.+++.+|+|.+++. +.+.+.+.+. ++.+|+|+|||+|.+++.+++.+.+|+|+|+++.+++
T Consensus 249 G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~ 328 (431)
T TIGR00479 249 GEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVE 328 (431)
T ss_pred CCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHH
Confidence 44455544443 5778899999998753 3333444333 3679999999999999999998889999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCC
Q psy13204 100 LAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~ 141 (189)
.|++|+..+++ .+++++++|+.+.. ....||+|++|||+.+
T Consensus 329 ~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 329 KAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKG 374 (431)
T ss_pred HHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCC
Confidence 99999999998 58999999997643 2346999999999876
No 19
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.63 E-value=7e-15 Score=117.23 Aligned_cols=91 Identities=32% Similarity=0.465 Sum_probs=77.4
Q ss_pred HHHHHHHHh--CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204 52 KVAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL 128 (189)
Q Consensus 52 ~~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 128 (189)
.++..++.. .+++..|+|+|||+|+++++++..+.+++|+|+++.+++.++.|+...++. ++.+.++|+.+.. +..
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccC
Confidence 455555543 345889999999999999999888999999999999999999999999985 4899999998875 456
Q ss_pred CccEEEECCCCCCCc
Q psy13204 129 QGDVVFLSPPWGGPE 143 (189)
Q Consensus 129 ~~D~v~~npp~~~~~ 143 (189)
.||+|++||||+...
T Consensus 248 ~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 248 SVDAIATDPPYGRST 262 (329)
T ss_pred CCCEEEECCCCcCcc
Confidence 899999999998643
No 20
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.62 E-value=1e-14 Score=113.88 Aligned_cols=106 Identities=22% Similarity=0.290 Sum_probs=82.0
Q ss_pred CcccCCCcccccCh--HHHHHHHH-HhC--CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204 37 ADNDATESWYSVTP--EKVAQHIA-SRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG 109 (189)
Q Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~ 109 (189)
.+.+++..|. +.+ +.+....+ ..+ ..+.+|+|+|||+|.+++.+++. +.+++|+|+|+.+++.|++|+..++
T Consensus 91 ~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~ 169 (284)
T TIGR03533 91 EFYVDERVLI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG 169 (284)
T ss_pred EEEECCCCcc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 3555665555 333 23333322 233 23578999999999999999987 5689999999999999999999998
Q ss_pred CCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 110 ~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
+.++++++++|+.+..+...||+|++||||....
T Consensus 170 ~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~ 203 (284)
T TIGR03533 170 LEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDAE 203 (284)
T ss_pred CCCcEEEEECchhhccCCCCccEEEECCCCCCcc
Confidence 8667999999987765556899999999998654
No 21
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=4.4e-15 Score=115.50 Aligned_cols=91 Identities=27% Similarity=0.389 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCCCCC-EEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204 51 EKVAQHIASRCKASD-VVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS 127 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~-~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 127 (189)
+.+.+.+........ +|+|+|||+|..++.++.... +|+|+|+|+.+++.|+.|+..+++ .++.++++|.++..+.
T Consensus 97 e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~ 175 (280)
T COG2890 97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG 175 (280)
T ss_pred HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC
Confidence 445555433333333 699999999999999999865 899999999999999999999998 6777888888777654
Q ss_pred CCccEEEECCCCCCCc
Q psy13204 128 LQGDVVFLSPPWGGPE 143 (189)
Q Consensus 128 ~~~D~v~~npp~~~~~ 143 (189)
+||+|++||||-...
T Consensus 176 -~fDlIVsNPPYip~~ 190 (280)
T COG2890 176 -KFDLIVSNPPYIPAE 190 (280)
T ss_pred -ceeEEEeCCCCCCCc
Confidence 999999999999866
No 22
>KOG3420|consensus
Probab=99.60 E-value=4.2e-16 Score=106.94 Aligned_cols=132 Identities=22% Similarity=0.371 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHhCCC------CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204 49 TPEKVAQHIASRCKA------SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 121 (189)
Q Consensus 49 ~~~~~~~~~~~~~~~------~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 121 (189)
++..++..|+..+.. |+.++|+|||+|-+++.++.-+ ..|+|+|++|++++.++.|+....+ +++++++|+
T Consensus 28 T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdi 105 (185)
T KOG3420|consen 28 TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDI 105 (185)
T ss_pred CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeec
Confidence 444456555555433 8899999999999998887764 4689999999999999999999988 789999999
Q ss_pred ccCC-CCCCccEEEECCCCCCCccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCCCCCc
Q psy13204 122 FALA-PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDV 185 (189)
Q Consensus 122 ~~~~-~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~ 185 (189)
.+.- ....||.+++||||+..........+...++- --.+++..+.-+.+..+-||+..++
T Consensus 106 ldle~~~g~fDtaviNppFGTk~~~aDm~fv~~al~~---~~~VySLHKtSTRey~~kLP~~ykF 167 (185)
T KOG3420|consen 106 LDLELKGGIFDTAVINPPFGTKKKGADMEFVSAALKV---ASAVYSLHKTSTREYRYKLPKLYKF 167 (185)
T ss_pred cchhccCCeEeeEEecCCCCcccccccHHHHHHHHHH---HHHHHHHhcccHHHHHHhcchhhhh
Confidence 8875 55689999999999863222111111212211 1145555555556666667766554
No 23
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.60 E-value=6.3e-15 Score=107.67 Aligned_cols=92 Identities=35% Similarity=0.502 Sum_probs=72.1
Q ss_pred HHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC--e---------EEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204 51 EKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ--K---------VISIDIDPAKLRLAQHNASVYGVSHKIQFI 117 (189)
Q Consensus 51 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~--~---------v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (189)
+.++..++..... +..|+|++||+|++.++++..+. . ++|.|+++++++.|++|+...++...+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 5677777666544 78999999999999999987633 3 779999999999999999999997789999
Q ss_pred eCCcccCC-CCCCccEEEECCCCCCC
Q psy13204 118 QGDFFALA-PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 118 ~~d~~~~~-~~~~~D~v~~npp~~~~ 142 (189)
+.|+.+.. ....+|+|++||||+..
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE--STTS
T ss_pred ecchhhcccccCCCCEEEECcchhhh
Confidence 99999987 66789999999999963
No 24
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=2.5e-14 Score=112.79 Aligned_cols=106 Identities=22% Similarity=0.301 Sum_probs=81.7
Q ss_pred CcccCCCcccccCh--HHHHHHH-HHhCCC-C-CEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204 37 ADNDATESWYSVTP--EKVAQHI-ASRCKA-S-DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG 109 (189)
Q Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~-~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~ 109 (189)
.+.+++..+. +.+ +.+.... ...++. + .+|+|+|||+|.+++.+++. +.+++++|+|+.+++.|++|+..++
T Consensus 103 ~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~ 181 (307)
T PRK11805 103 EFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG 181 (307)
T ss_pred EEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4556666655 333 2233322 223332 2 68999999999999999887 5689999999999999999999998
Q ss_pred CCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 110 VSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 110 ~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
+.++++++++|+.+..+..+||+|++||||....
T Consensus 182 l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~ 215 (307)
T PRK11805 182 LEDRVTLIESDLFAALPGRRYDLIVSNPPYVDAE 215 (307)
T ss_pred CCCcEEEEECchhhhCCCCCccEEEECCCCCCcc
Confidence 8667999999987765556899999999998754
No 25
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.58 E-value=3.2e-14 Score=102.97 Aligned_cols=132 Identities=14% Similarity=0.241 Sum_probs=98.6
Q ss_pred cccCCCcccccChHHHHHHHHHhCCC----CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204 38 DNDATESWYSVTPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSH 112 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~ 112 (189)
++.....-..+|.+.+.+.+-+.+.+ +.++||+++|+|.+++++..+|+ .++.||.|..++..+++|+...++..
T Consensus 14 L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~ 93 (187)
T COG0742 14 LKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG 93 (187)
T ss_pred ccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc
Confidence 44445456667777777766666543 78999999999999999988855 69999999999999999999999777
Q ss_pred ceEEEeCCcccCC--CC--CCccEEEECCCCCCCcccc--cc--ccccccCcCCCCchhHHHHhhhc
Q psy13204 113 KIQFIQGDFFALA--PS--LQGDVVFLSPPWGGPEYAR--SS--FSIDNIFPEQGGGRRLFQVARGI 171 (189)
Q Consensus 113 ~~~~~~~d~~~~~--~~--~~~D~v~~npp~~~~~~~~--~~--~~~~~~l~~~~~g~~~~~~~~~~ 171 (189)
+++++..|+...+ .. ..||+|++||||+.--... .. .....++.+ +++.+++.....
T Consensus 94 ~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~--~~~iv~E~~~~~ 158 (187)
T COG0742 94 EARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKP--GALIVVEHDKDV 158 (187)
T ss_pred ceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCC--CcEEEEEeCCCc
Confidence 8999999998664 22 2499999999999422211 11 123456744 477777776553
No 26
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=3.5e-14 Score=114.23 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=79.6
Q ss_pred CCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCC--CceE
Q psy13204 42 TESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQ 115 (189)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~ 115 (189)
+.-|-...-+.-.+.+.+.++. +.+|||+|||+|.+++.+++. ..+|+++|.|+.+++.|++|+..++.. .+++
T Consensus 205 ~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 205 ANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred CCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEE
Confidence 3334333334445666677754 468999999999999999887 568999999999999999999888642 2689
Q ss_pred EEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 116 FIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 116 ~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
+..+|..+..+..+||+|++||||+..
T Consensus 285 ~~~~D~l~~~~~~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 285 FMINNALSGVEPFRFNAVLCNPPFHQQ 311 (378)
T ss_pred EEEccccccCCCCCEEEEEECcCcccC
Confidence 999998776555689999999999864
No 27
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.57 E-value=8.5e-15 Score=117.72 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=86.1
Q ss_pred cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204 44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF 121 (189)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~ 121 (189)
+||...++ .+..+...++ |++|||++|-||++++.++..|+ +|++||+|..+++.|++|+..||+. .++.++++|+
T Consensus 200 GfFlDqR~-~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv 277 (393)
T COG1092 200 GFFLDQRD-NRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV 277 (393)
T ss_pred eeeHHhHH-HHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH
Confidence 66666654 4666666667 99999999999999999999998 8999999999999999999999985 3589999999
Q ss_pred ccCC-----CCCCccEEEECCCCCCCcccc
Q psy13204 122 FALA-----PSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 122 ~~~~-----~~~~~D~v~~npp~~~~~~~~ 146 (189)
++++ .+.+||+|++|||-...+...
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~r~k~~ 307 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFARSKKQ 307 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccccCccc
Confidence 9987 456899999999977655443
No 28
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.57 E-value=3.7e-14 Score=114.57 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=82.5
Q ss_pred CcccCCCccccc-ChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204 37 ADNDATESWYSV-TPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHK 113 (189)
Q Consensus 37 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 113 (189)
.+.+++..+... ..+.+.+.+...++++.+|+|+|||+|.+++.+++. +.+++|+|+|+.+++.|++|+..++. +
T Consensus 224 ~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--r 301 (423)
T PRK14966 224 RFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--R 301 (423)
T ss_pred EEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 455556555421 235566666666666779999999999999998865 67899999999999999999988875 8
Q ss_pred eEEEeCCcccCC--CCCCccEEEECCCCCCCc
Q psy13204 114 IQFIQGDFFALA--PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 114 ~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~ 143 (189)
++++++|+.+.. ...+||+|++||||....
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENG 333 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCCCCCcc
Confidence 999999987643 235799999999997644
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=5.7e-14 Score=94.71 Aligned_cols=74 Identities=34% Similarity=0.467 Sum_probs=65.8
Q ss_pred CCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc-ccCCCCCCccEEEECC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALAPSLQGDVVFLSP 137 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~D~v~~np 137 (189)
+.+|||+|||+|.+++.+++ .+.+++|+|+|+++++.|++++...+...+++++++|+ ........||+|+++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 67999999999999999999 59999999999999999999997777777999999999 4444456799999976
No 30
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.57 E-value=1.7e-14 Score=117.10 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=77.8
Q ss_pred cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204 44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF 121 (189)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~ 121 (189)
+||-..++ .+..+.. +..+.+|||+|||+|++++.++..++ +|+++|+|+.+++.|++|+..+++. .+++++++|+
T Consensus 203 G~flDqr~-~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~ 280 (396)
T PRK15128 203 GYYLDQRD-SRLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV 280 (396)
T ss_pred CcChhhHH-HHHHHHH-hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH
Confidence 46655433 2333333 34589999999999999998776654 8999999999999999999999984 3789999999
Q ss_pred ccCC-----CCCCccEEEECCCCCCCc
Q psy13204 122 FALA-----PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 122 ~~~~-----~~~~~D~v~~npp~~~~~ 143 (189)
.+.+ ...+||+|++||||...+
T Consensus 281 ~~~l~~~~~~~~~fDlVilDPP~f~~~ 307 (396)
T PRK15128 281 FKLLRTYRDRGEKFDVIVMDPPKFVEN 307 (396)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 8875 245899999999996544
No 31
>PHA03411 putative methyltransferase; Provisional
Probab=99.56 E-value=3e-14 Score=109.16 Aligned_cols=97 Identities=21% Similarity=0.399 Sum_probs=75.0
Q ss_pred CCcccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204 42 TESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119 (189)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (189)
...|| ||+.+...+......+.+|||+|||+|.+++.++.+ +.+++++|+++.+++.++++. .+++++++
T Consensus 45 ~G~Ff--TP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~ 116 (279)
T PHA03411 45 SGAFF--TPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITS 116 (279)
T ss_pred ceeEc--CCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEEC
Confidence 44555 455555444322333679999999999999988775 569999999999999998864 26889999
Q ss_pred CcccCCCCCCccEEEECCCCCCCcccc
Q psy13204 120 DFFALAPSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 120 d~~~~~~~~~~D~v~~npp~~~~~~~~ 146 (189)
|+.+.....+||+|++||||......+
T Consensus 117 D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 117 DVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred chhhhcccCCCcEEEEcCCccccCchh
Confidence 999876556899999999999865444
No 32
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.56 E-value=6.3e-14 Score=109.62 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=82.2
Q ss_pred CcccCCCcccc-cChHHHHHHHHHhCC-C--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204 37 ADNDATESWYS-VTPEKVAQHIASRCK-A--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV 110 (189)
Q Consensus 37 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~ 110 (189)
.+.+++..+.. ...+.+...+...+. . ..+|+|+|||+|.+++.++.. +.+++|+|+|+++++.|++|+..+++
T Consensus 84 ~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~ 163 (284)
T TIGR00536 84 EFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL 163 (284)
T ss_pred EEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 35555554432 122455555544332 2 268999999999999999986 46899999999999999999999988
Q ss_pred CCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 111 SHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 111 ~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
.++++++++|+.+..+..+||+|++||||....
T Consensus 164 ~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~ 196 (284)
T TIGR00536 164 EHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEE 196 (284)
T ss_pred CCcEEEEECchhccCcCCCccEEEECCCCCCcc
Confidence 556999999998765555899999999998754
No 33
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.55 E-value=4.6e-14 Score=110.69 Aligned_cols=106 Identities=25% Similarity=0.437 Sum_probs=83.8
Q ss_pred cCCCcccccCh--HHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceE
Q psy13204 40 DATESWYSVTP--EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 115 (189)
Q Consensus 40 ~~~~~~~~~~~--~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~ 115 (189)
..++.|+++.. ..+++.+++.. ++|..|+|++||||++.+++.-.|.+++|.|++..|++-|+.|+...++. +..
T Consensus 170 ~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~ 248 (347)
T COG1041 170 PEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYP 248 (347)
T ss_pred cccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-cee
Confidence 34445665532 34666665544 44889999999999999999999999999999999999999999999884 444
Q ss_pred EEeC-CcccCC-CCCCccEEEECCCCCCCcccc
Q psy13204 116 FIQG-DFFALA-PSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 116 ~~~~-d~~~~~-~~~~~D~v~~npp~~~~~~~~ 146 (189)
+... |+.+.+ +..++|.|++||||+.....+
T Consensus 249 ~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~ 281 (347)
T COG1041 249 VLKVLDATNLPLRDNSVDAIATDPPYGRSTKIK 281 (347)
T ss_pred EEEecccccCCCCCCccceEEecCCCCcccccc
Confidence 4444 888876 555799999999999876554
No 34
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=7.9e-14 Score=107.50 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=83.6
Q ss_pred CcccCCCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204 37 ADNDATESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSH 112 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~ 112 (189)
.+..++.-|.....+.=.+.+++.++. +..|+|+|||.|.+++.+++.. .+++-+|+|..+++.|+.|+..+++.
T Consensus 130 ~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~- 208 (300)
T COG2813 130 TFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE- 208 (300)
T ss_pred EEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-
Confidence 344556666555555556677777765 5599999999999999999985 48999999999999999999999984
Q ss_pred ceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 113 KIQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 113 ~~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
+..+..+|..+.... +||.|++||||+.
T Consensus 209 ~~~v~~s~~~~~v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 209 NTEVWASNLYEPVEG-KFDLIISNPPFHA 236 (300)
T ss_pred ccEEEEecccccccc-cccEEEeCCCccC
Confidence 437888888777655 9999999999995
No 35
>KOG2187|consensus
Probab=99.54 E-value=1.4e-14 Score=117.74 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=98.4
Q ss_pred cchhhhhhhcC-CcccCCCcccccChH---HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH
Q psy13204 26 GLEYFELTLAD-ADNDATESWYSVTPE---KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR 99 (189)
Q Consensus 26 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~ 99 (189)
+..++.+.+.+ ++.+++.+|||.+.. .+.+.+-+.+ +.++.++|++||+|.+++.+++...+|+|||+++.+++
T Consensus 340 ~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 340 GDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVE 419 (534)
T ss_pred cccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcc
Confidence 56688888876 899999999999763 3334444444 33789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCcccCCCC------CCcc-EEEECCCCCCCcccc
Q psy13204 100 LAQHNASVYGVSHKIQFIQGDFFALAPS------LQGD-VVFLSPPWGGPEYAR 146 (189)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~D-~v~~npp~~~~~~~~ 146 (189)
.|+.|+..+|+ .+++|+++-+++..+. ..-+ ++++|||+.++.+..
T Consensus 420 dA~~nA~~Ngi-sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ 472 (534)
T KOG2187|consen 420 DAEKNAQINGI-SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKV 472 (534)
T ss_pred hhhhcchhcCc-cceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHH
Confidence 99999999999 5999999977765521 1345 889999999877554
No 36
>PRK14967 putative methyltransferase; Provisional
Probab=99.53 E-value=1.6e-13 Score=103.69 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=70.9
Q ss_pred CCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 139 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~ 139 (189)
+.++.+|||+|||+|.+++.+++.+. +++++|+++.+++.+++|+..++. +++++++|+.+..+...||+|++||||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCCC
Confidence 34478999999999999999988765 899999999999999999988876 688999998876666789999999999
Q ss_pred CCCc
Q psy13204 140 GGPE 143 (189)
Q Consensus 140 ~~~~ 143 (189)
....
T Consensus 112 ~~~~ 115 (223)
T PRK14967 112 VPAP 115 (223)
T ss_pred CCCC
Confidence 8654
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=2.5e-14 Score=106.64 Aligned_cols=103 Identities=25% Similarity=0.236 Sum_probs=84.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWGG 141 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp~~~ 141 (189)
.+.+|||+|||.|.++..+|+.|++|+|+|+++++++.|+..+...++ ++++.+.++++... +.+||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~c------ 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTC------ 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEE------
Confidence 389999999999999999999999999999999999999999999988 68889999888863 379999999
Q ss_pred CccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCCC
Q psy13204 142 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRT 182 (189)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~ 182 (189)
.++-+.+|+ ...++..|.+.+.|...+++...
T Consensus 131 -------mEVlEHv~d--p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 131 -------MEVLEHVPD--PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -------hhHHHccCC--HHHHHHHHHHHcCCCcEEEEecc
Confidence 233334444 24466678888888777776543
No 38
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.53 E-value=1.6e-13 Score=105.36 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=78.0
Q ss_pred CcccCCCccccc-ChHHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCC
Q psy13204 37 ADNDATESWYSV-TPEKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGV 110 (189)
Q Consensus 37 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~ 110 (189)
.+.+++..|... ..+.+.+.+...++. +.+|+|+|||+|.+++.+++. +.+++++|+|+.+++.|++|+..++
T Consensus 56 ~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~- 134 (251)
T TIGR03704 56 RIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG- 134 (251)
T ss_pred EEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-
Confidence 466677777632 224455555544432 458999999999999999876 5689999999999999999998765
Q ss_pred CCceEEEeCCcccCCC---CCCccEEEECCCCCCCc
Q psy13204 111 SHKIQFIQGDFFALAP---SLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 111 ~~~~~~~~~d~~~~~~---~~~~D~v~~npp~~~~~ 143 (189)
.+++++|+.+..+ ...||+|++||||...+
T Consensus 135 ---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 135 ---GTVHEGDLYDALPTALRGRVDILAANAPYVPTD 167 (251)
T ss_pred ---CEEEEeechhhcchhcCCCEeEEEECCCCCCch
Confidence 3788999877542 24799999999998644
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=2e-13 Score=104.79 Aligned_cols=92 Identities=27% Similarity=0.434 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC
Q psy13204 51 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS 127 (189)
Q Consensus 51 ~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 127 (189)
+.+...+...+.. +.+|+|+|||+|.++..+++. ..+++|+|+++.+++.|+.++...++ .++.++++|+.+..+.
T Consensus 74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~ 152 (251)
T TIGR03534 74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPG 152 (251)
T ss_pred HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcC
Confidence 4455555555543 568999999999999999987 56899999999999999999998888 4799999999886666
Q ss_pred CCccEEEECCCCCCCc
Q psy13204 128 LQGDVVFLSPPWGGPE 143 (189)
Q Consensus 128 ~~~D~v~~npp~~~~~ 143 (189)
.+||+|++||||....
T Consensus 153 ~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEA 168 (251)
T ss_pred CceeEEEECCCCCchh
Confidence 7899999999998644
No 40
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=1.3e-13 Score=115.47 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
+.+|||+|||+|.+++.++.. +.+++++|+|+.+++.|++|+..+++.++++++++|+.+..+..+||+|++||||..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 468999999999999998875 678999999999999999999988886679999999877655568999999999997
Q ss_pred Ccc
Q psy13204 142 PEY 144 (189)
Q Consensus 142 ~~~ 144 (189)
.+.
T Consensus 219 ~~~ 221 (506)
T PRK01544 219 HSE 221 (506)
T ss_pred chh
Confidence 554
No 41
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.3e-13 Score=109.52 Aligned_cols=91 Identities=31% Similarity=0.433 Sum_probs=79.8
Q ss_pred HHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC-----------------------------------------e
Q psy13204 51 EKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ-----------------------------------------K 87 (189)
Q Consensus 51 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~-----------------------------------------~ 87 (189)
+.++..|+.+... +..++|+.||+|++.+++|..+. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 6677777766655 66899999999999999998763 2
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-CCccEEEECCCCCC
Q psy13204 88 VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGG 141 (189)
Q Consensus 88 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~npp~~~ 141 (189)
++|+|+++.+++.|+.|+...|+.+.|+|.++|+.++.+. ..+|+||+||||+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGe 311 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGE 311 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcch
Confidence 6799999999999999999999988899999999988754 68999999999995
No 42
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.51 E-value=1.6e-13 Score=101.33 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=76.4
Q ss_pred CcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204 37 ADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHK 113 (189)
Q Consensus 37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 113 (189)
.+.+|.. .+|...-..-...++...+++..|+|++||.|.+++.+++ .+..|+++|+||.+++.+++|++.+++.+.
T Consensus 74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~ 153 (200)
T PF02475_consen 74 RFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENR 153 (200)
T ss_dssp EEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTT
T ss_pred EEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCe
Confidence 5666755 4455443333556667777799999999999999999998 578899999999999999999999999878
Q ss_pred eEEEeCCcccCCCCCCccEEEECCCCCCCcc
Q psy13204 114 IQFIQGDFFALAPSLQGDVVFLSPPWGGPEY 144 (189)
Q Consensus 114 ~~~~~~d~~~~~~~~~~D~v~~npp~~~~~~ 144 (189)
+..+++|+.++.+...+|-|+||.|.....+
T Consensus 154 i~~~~~D~~~~~~~~~~drvim~lp~~~~~f 184 (200)
T PF02475_consen 154 IEVINGDAREFLPEGKFDRVIMNLPESSLEF 184 (200)
T ss_dssp EEEEES-GGG---TT-EEEEEE--TSSGGGG
T ss_pred EEEEcCCHHHhcCccccCEEEECChHHHHHH
Confidence 9999999999987778999999999775443
No 43
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.51 E-value=6.5e-14 Score=108.61 Aligned_cols=98 Identities=27% Similarity=0.375 Sum_probs=75.3
Q ss_pred cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204 44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF 121 (189)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~ 121 (189)
++|-..++ .+.++....+ +++|||++|-+|++++.++..|+ +|+.||.|..+++.+++|+..+++. ..++++++|+
T Consensus 106 GlFlDqR~-nR~~v~~~~~-gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv 183 (286)
T PF10672_consen 106 GLFLDQRE-NRKWVRKYAK-GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV 183 (286)
T ss_dssp SS-GGGHH-HHHHHHHHCT-TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H
T ss_pred eEcHHHHh-hHHHHHHHcC-CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH
Confidence 77777765 4566666554 89999999999999999998886 6999999999999999999999985 4789999999
Q ss_pred ccCC----CCCCccEEEECCCCCCCc
Q psy13204 122 FALA----PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 122 ~~~~----~~~~~D~v~~npp~~~~~ 143 (189)
+++. ...+||+||+|||-...+
T Consensus 184 f~~l~~~~~~~~fD~IIlDPPsF~k~ 209 (286)
T PF10672_consen 184 FKFLKRLKKGGRFDLIILDPPSFAKS 209 (286)
T ss_dssp HHHHHHHHHTT-EEEEEE--SSEESS
T ss_pred HHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 8865 346899999999966433
No 44
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=2.1e-13 Score=108.87 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=80.1
Q ss_pred cccCCCcccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCc
Q psy13204 38 DNDATESWYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHK 113 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 113 (189)
+...+..|.+...+.-.+.+.+.+.. ..+|||+|||+|.++..+++.. .+++++|+++.+++.|++++..+++ .
T Consensus 169 i~~~pgvFs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~ 246 (342)
T PRK09489 169 VKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--E 246 (342)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--C
Confidence 44457777776655444555555543 5689999999999999998873 5899999999999999999999887 4
Q ss_pred eEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 114 IQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 114 ~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
.+++.+|..+.. ...||+|++||||+.
T Consensus 247 ~~~~~~D~~~~~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 247 GEVFASNVFSDI-KGRFDMIISNPPFHD 273 (342)
T ss_pred CEEEEccccccc-CCCccEEEECCCccC
Confidence 577888876643 468999999999985
No 45
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.51 E-value=1.5e-13 Score=99.57 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=67.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~ 141 (189)
.+.+|+|+|||+|.++..+++.+.+++++|+++.+++.+++++.. . .+++++++|+.+.. +...+|.|++||||+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 377999999999999999999888999999999999999988753 2 47899999999886 4446999999999986
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=3.7e-13 Score=98.44 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=68.9
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
+.+|+|+|||+|.++..+++.+.+++++|+++.+++.+++|...++. +++++++|..+... .+||+|++||||+...
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECCCCCCCc
Confidence 67899999999999999999888999999999999999999988876 68899999877643 4899999999998654
No 47
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.50 E-value=7.5e-14 Score=121.11 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=79.5
Q ss_pred cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCc
Q psy13204 44 SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDF 121 (189)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~ 121 (189)
++|-..++ .+..+....+ +.+|||+|||+|.+++.+++.|+ +|+++|+|+.+++.|++|+..+++. .+++++++|+
T Consensus 521 G~flDqr~-~R~~~~~~~~-g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~ 598 (702)
T PRK11783 521 GLFLDHRP-TRRMIGQMAK-GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC 598 (702)
T ss_pred eECHHHHH-HHHHHHHhcC-CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH
Confidence 45544443 3455554444 88999999999999999999876 5999999999999999999999985 4799999999
Q ss_pred ccCCC--CCCccEEEECCCCCCC
Q psy13204 122 FALAP--SLQGDVVFLSPPWGGP 142 (189)
Q Consensus 122 ~~~~~--~~~~D~v~~npp~~~~ 142 (189)
.++.. ..+||+|++|||+...
T Consensus 599 ~~~l~~~~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 599 LAWLKEAREQFDLIFIDPPTFSN 621 (702)
T ss_pred HHHHHHcCCCcCEEEECCCCCCC
Confidence 87652 4589999999999764
No 48
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=8e-14 Score=105.22 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=76.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 139 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~ 139 (189)
+|.+|||+|||||.+++.+++.. ++|+|+|+|+.|++.|+++....+.. +++++++|+++.+ ++++||++.+.--.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCCCCCccCEEEeeehh
Confidence 48999999999999999999985 78999999999999999999988774 4999999999998 88999999995444
Q ss_pred CCCcccc-ccccccccCcC
Q psy13204 140 GGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 140 ~~~~~~~-~~~~~~~~l~~ 157 (189)
+...... .+.++.+++++
T Consensus 130 rnv~d~~~aL~E~~RVlKp 148 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKP 148 (238)
T ss_pred hcCCCHHHHHHHHHHhhcC
Confidence 4333222 34456666643
No 49
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.4e-13 Score=105.29 Aligned_cols=92 Identities=25% Similarity=0.257 Sum_probs=76.3
Q ss_pred cccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204 46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124 (189)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 124 (189)
+..|...+.+++.....++.+|||+|||+|-+++++++.|+. ++|+|++|-+++.|++|+..|++...++....+..+.
T Consensus 145 ~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred CChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 445566778888888888999999999999999999999875 9999999999999999999999843344555555555
Q ss_pred CCCCCccEEEECC
Q psy13204 125 APSLQGDVVFLSP 137 (189)
Q Consensus 125 ~~~~~~D~v~~np 137 (189)
....+||+|++|-
T Consensus 225 ~~~~~~DvIVANI 237 (300)
T COG2264 225 PENGPFDVIVANI 237 (300)
T ss_pred cccCcccEEEehh
Confidence 5556999999985
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=5.2e-13 Score=95.06 Aligned_cols=80 Identities=28% Similarity=0.382 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--CCccEEEECC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSP 137 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~np 137 (189)
.+.+|||+|||+|.++..+++. +.+++|+|+|+++++.|+++++..++. +++++++|+.++... ..||+|+++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 3679999999999999999943 679999999999999999999999994 899999999995422 6899999998
Q ss_pred CCCCCc
Q psy13204 138 PWGGPE 143 (189)
Q Consensus 138 p~~~~~ 143 (189)
+++...
T Consensus 82 ~l~~~~ 87 (152)
T PF13847_consen 82 VLHHFP 87 (152)
T ss_dssp TGGGTS
T ss_pred chhhcc
Confidence 885533
No 51
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=2e-13 Score=101.32 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
++.+|||+|||+|..+..+++++.+|+|+|+|+.+++.++++....++ .++++.+.|+.+......||+|+++..++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVLMFL 108 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecchhhC
Confidence 367999999999999999999999999999999999999999888887 4689999998776544679999998877654
Q ss_pred cccc---ccccccccCcC
Q psy13204 143 EYAR---SSFSIDNIFPE 157 (189)
Q Consensus 143 ~~~~---~~~~~~~~l~~ 157 (189)
.... ....+.+++++
T Consensus 109 ~~~~~~~~l~~i~~~Lkp 126 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKP 126 (197)
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 3222 23356666644
No 52
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.47 E-value=1.7e-13 Score=101.56 Aligned_cols=95 Identities=18% Similarity=0.122 Sum_probs=75.5
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
+.+|||+|||+|..+..+++++.+|+|+|+|+.+++.+++++...++ ++++.+.|........+||+|+++.+++...
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCEEEEecccccCC
Confidence 67999999999999999999999999999999999999999888777 4778888876544345799999999988654
Q ss_pred ccc---ccccccccCcCCCCch
Q psy13204 144 YAR---SSFSIDNIFPEQGGGR 162 (189)
Q Consensus 144 ~~~---~~~~~~~~l~~~~~g~ 162 (189)
... ....+.++|++ ||+
T Consensus 109 ~~~~~~~l~~~~~~Lkp--gG~ 128 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRP--GGY 128 (195)
T ss_pred HHHHHHHHHHHHHHhCC--CcE
Confidence 322 33355666654 454
No 53
>KOG2904|consensus
Probab=99.46 E-value=1.4e-12 Score=98.68 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCC-----CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc--
Q psy13204 51 EKVAQHIASRCKA-----SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-- 121 (189)
Q Consensus 51 ~~~~~~~~~~~~~-----~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-- 121 (189)
|++.+++.+.+.. +..++|+|||+|.+++.++.. -.+++++|.++.++..|.+|+.++++.+.+.+++-+.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 4566666555433 668999999999999999876 4578999999999999999999999988888885533
Q ss_pred --ccCC--CCCCccEEEECCCCCCCcccc------ccccccccCcCCCCchhHHHH
Q psy13204 122 --FALA--PSLQGDVVFLSPPWGGPEYAR------SSFSIDNIFPEQGGGRRLFQV 167 (189)
Q Consensus 122 --~~~~--~~~~~D~v~~npp~~~~~~~~------~~~~~~~~l~~~~~g~~~~~~ 167 (189)
.+.. .....|++++||||-..+... +.++....|.+..+|+.++-+
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~ 266 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVH 266 (328)
T ss_pred ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHH
Confidence 3222 346899999999999766544 333333344433345544333
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=1.8e-13 Score=105.52 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=78.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWG 140 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~ 140 (189)
.+.+|||+|||+|.++..+++.+.+|+++|+++++++.|+++....++..+++++++|+.+.. ...+||+|+++.+++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~ 123 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLE 123 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHH
Confidence 367999999999999999999999999999999999999999988887668999999998764 456899999988877
Q ss_pred CCcccc-ccccccccCcC
Q psy13204 141 GPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 141 ~~~~~~-~~~~~~~~l~~ 157 (189)
...... ....+.+++++
T Consensus 124 ~~~~~~~~l~~~~~~Lkp 141 (255)
T PRK11036 124 WVADPKSVLQTLWSVLRP 141 (255)
T ss_pred hhCCHHHHHHHHHHHcCC
Confidence 654333 33456667754
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=2.7e-12 Score=99.90 Aligned_cols=92 Identities=27% Similarity=0.443 Sum_probs=73.7
Q ss_pred HHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204 51 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126 (189)
Q Consensus 51 ~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 126 (189)
+.+.+.+.... .++.+|+|+|||+|.+++.++... .+++|+|+++.+++.|++|+. .....++.++++|+.+..+
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~ 172 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP 172 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC
Confidence 44555554333 237799999999999999998874 789999999999999999988 3333579999999876555
Q ss_pred CCCccEEEECCCCCCCc
Q psy13204 127 SLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 127 ~~~~D~v~~npp~~~~~ 143 (189)
..+||+|++||||....
T Consensus 173 ~~~fD~Iv~npPy~~~~ 189 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEA 189 (275)
T ss_pred CCceeEEEECCCcCCcc
Confidence 56899999999998644
No 56
>PRK14968 putative methyltransferase; Provisional
Probab=99.43 E-value=3.8e-12 Score=93.45 Aligned_cols=81 Identities=27% Similarity=0.405 Sum_probs=70.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCc-eEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
.++.+|||+|||+|.++..++..+.+++++|+++++++.+++++..++..++ +.++++|..+......||+|++||||.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 3478999999999999999998899999999999999999999988877322 889999988766556899999999997
Q ss_pred CC
Q psy13204 141 GP 142 (189)
Q Consensus 141 ~~ 142 (189)
..
T Consensus 102 ~~ 103 (188)
T PRK14968 102 PT 103 (188)
T ss_pred CC
Confidence 63
No 57
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.42 E-value=2.2e-12 Score=101.05 Aligned_cols=91 Identities=24% Similarity=0.297 Sum_probs=76.5
Q ss_pred HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204 52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 129 (189)
Q Consensus 52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 129 (189)
.+...+++.+ .++..|+|+|||+|.++..+++.+.+|+++|+|+.+++.+++++...+..++++++++|+.+... ..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~ 101 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PY 101 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cc
Confidence 3555555544 34789999999999999999999899999999999999999998877654689999999988642 46
Q ss_pred ccEEEECCCCCCCc
Q psy13204 130 GDVVFLSPPWGGPE 143 (189)
Q Consensus 130 ~D~v~~npp~~~~~ 143 (189)
+|+|++|+||...+
T Consensus 102 ~d~VvaNlPY~Ist 115 (294)
T PTZ00338 102 FDVCVANVPYQISS 115 (294)
T ss_pred cCEEEecCCcccCc
Confidence 89999999999765
No 58
>PLN02244 tocopherol O-methyltransferase
Probab=99.42 E-value=1.2e-12 Score=104.81 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=77.0
Q ss_pred CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 140 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~ 140 (189)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++....++.++++++++|+.+.. ++.+||+|++.-..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 4789999999999999999986 78999999999999999999988888668999999998875 667899999976655
Q ss_pred CCcccc-ccccccccCcC
Q psy13204 141 GPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 141 ~~~~~~-~~~~~~~~l~~ 157 (189)
+..... ....+.+++++
T Consensus 198 h~~d~~~~l~e~~rvLkp 215 (340)
T PLN02244 198 HMPDKRKFVQELARVAAP 215 (340)
T ss_pred ccCCHHHHHHHHHHHcCC
Confidence 443222 33456666644
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.42 E-value=2.5e-12 Score=94.46 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=67.9
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 136 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n 136 (189)
..++++.+|||+|||+|..++.+++. +.+|+++|.++.+++.|++++..+++. +++++++|+.+.....+||+|+++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEc
Confidence 44555889999999999999999864 679999999999999999999999984 599999999887655689999996
Q ss_pred C
Q psy13204 137 P 137 (189)
Q Consensus 137 p 137 (189)
.
T Consensus 120 ~ 120 (187)
T PRK00107 120 A 120 (187)
T ss_pred c
Confidence 3
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=3.1e-12 Score=105.95 Aligned_cols=83 Identities=27% Similarity=0.421 Sum_probs=72.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 138 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp 138 (189)
.++.+|||+|||+|+.+..+++. +.+|+++|+++.+++.+++++...|+ .+++++++|+.+..+...||+|++|||
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34889999999999999888764 46899999999999999999999998 479999999988766668999999999
Q ss_pred CCCCccc
Q psy13204 139 WGGPEYA 145 (189)
Q Consensus 139 ~~~~~~~ 145 (189)
|.+.+..
T Consensus 328 csg~g~~ 334 (445)
T PRK14904 328 CTGTGVL 334 (445)
T ss_pred CCCcchh
Confidence 9886643
No 61
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.41 E-value=1.6e-12 Score=101.46 Aligned_cols=89 Identities=28% Similarity=0.274 Sum_probs=69.2
Q ss_pred cChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204 48 VTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 126 (189)
.|...+.+.+.....++.+|||+|||+|-+++.+++.|+ +|+|+|++|.+++.|++|+..|++..++.+. ...+. .
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~ 222 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-V 222 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-C
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-c
Confidence 345667788888878799999999999999999999977 6999999999999999999999996655442 22222 3
Q ss_pred CCCccEEEECCCC
Q psy13204 127 SLQGDVVFLSPPW 139 (189)
Q Consensus 127 ~~~~D~v~~npp~ 139 (189)
..+||+|++|--.
T Consensus 223 ~~~~dlvvANI~~ 235 (295)
T PF06325_consen 223 EGKFDLVVANILA 235 (295)
T ss_dssp CS-EEEEEEES-H
T ss_pred cccCCEEEECCCH
Confidence 4789999998544
No 62
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.41 E-value=1.6e-12 Score=102.58 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=65.6
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEe-CCcccCC-----CCCCccEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQ-GDFFALA-----PSLQGDVVF 134 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~-----~~~~~D~v~ 134 (189)
+.++||+|||+|.+...++.. +.+++|+|+++.+++.|++|+..+ ++.+++++++ .|..+.. +...||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 579999999999887777654 789999999999999999999999 7877788864 3333322 345899999
Q ss_pred ECCCCCCCcc
Q psy13204 135 LSPPWGGPEY 144 (189)
Q Consensus 135 ~npp~~~~~~ 144 (189)
+||||.....
T Consensus 195 cNPPf~~s~~ 204 (321)
T PRK11727 195 CNPPFHASAA 204 (321)
T ss_pred eCCCCcCcch
Confidence 9999997543
No 63
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.40 E-value=3.8e-12 Score=98.55 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=71.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP 137 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np 137 (189)
+++.+|||+|||+|+.+..+++. ...|+++|+++.+++.+++|+...++ .++.+++.|+.+.. ....||+|++||
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45889999999999999998875 35899999999999999999999998 47999999987654 334699999999
Q ss_pred CCCCCccc
Q psy13204 138 PWGGPEYA 145 (189)
Q Consensus 138 p~~~~~~~ 145 (189)
||.+.+..
T Consensus 149 Pcsg~G~~ 156 (264)
T TIGR00446 149 PCSGEGVI 156 (264)
T ss_pred CCCCCccc
Confidence 99986544
No 64
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=103.55 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=94.9
Q ss_pred hhhhhhcCCcccCCC-cccccChHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHH
Q psy13204 29 YFELTLADADNDATE-SWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNAS 106 (189)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~ 106 (189)
.++.+....+++|.. .+|...-..-...++.....|.+|+|++||.|.+++.+|+.|.. |+++|+||.+++++++|++
T Consensus 153 TihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~ 232 (341)
T COG2520 153 TIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIR 232 (341)
T ss_pred EEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHH
Confidence 344455556788755 56665544446667777777999999999999999999999776 9999999999999999999
Q ss_pred HhCCCCceEEEeCCcccCCCC-CCccEEEECCCCCCCc
Q psy13204 107 VYGVSHKIQFIQGDFFALAPS-LQGDVVFLSPPWGGPE 143 (189)
Q Consensus 107 ~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~npp~~~~~ 143 (189)
.|++.+.+..+++|+.+..+. ..+|-|+|+.|.....
T Consensus 233 LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a~~ 270 (341)
T COG2520 233 LNKVEGRVEPILGDAREVAPELGVADRIIMGLPKSAHE 270 (341)
T ss_pred hcCccceeeEEeccHHHhhhccccCCEEEeCCCCcchh
Confidence 999976799999999999865 7899999998875433
No 65
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=1.1e-12 Score=96.14 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
+.++||+|||.|+.++++|++|..|+++|+|+.+++.+++.+...++ +++..+.|+.+......||+|++.-.+....
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCEEEEEEEeccCC
Confidence 77999999999999999999999999999999999999988888888 6999999998877557899998754444433
Q ss_pred ccc---ccccccccCcCCCCchhHHH
Q psy13204 144 YAR---SSFSIDNIFPEQGGGRRLFQ 166 (189)
Q Consensus 144 ~~~---~~~~~~~~l~~~~~g~~~~~ 166 (189)
... ....+...+.. ||+.++.
T Consensus 109 ~~~~~~i~~~m~~~~~p--GG~~li~ 132 (192)
T PF03848_consen 109 RELRPQIIENMKAATKP--GGYNLIV 132 (192)
T ss_dssp GGGHHHHHHHHHHTEEE--EEEEEEE
T ss_pred HHHHHHHHHHHHhhcCC--cEEEEEE
Confidence 222 12234444433 4665543
No 66
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.39 E-value=2.2e-12 Score=100.26 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=71.2
Q ss_pred HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-
Q psy13204 52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL- 128 (189)
Q Consensus 52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~- 128 (189)
.+.+.+++.+. ++.+|+|+|||+|.++..+++.+.+|+|+|+++.+++.++++... .+++++++|+.+.....
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence 45555655543 478999999999999999999988999999999999999887632 47999999999875222
Q ss_pred CccEEEECCCCCCCc
Q psy13204 129 QGDVVFLSPPWGGPE 143 (189)
Q Consensus 129 ~~D~v~~npp~~~~~ 143 (189)
.++.|++||||....
T Consensus 105 ~~~~vv~NlPY~iss 119 (272)
T PRK00274 105 QPLKVVANLPYNITT 119 (272)
T ss_pred CcceEEEeCCccchH
Confidence 258999999998743
No 67
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.39 E-value=8.6e-12 Score=90.00 Aligned_cols=88 Identities=30% Similarity=0.479 Sum_probs=76.8
Q ss_pred cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204 48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 123 (189)
.|.++++......+.. +.+++|+|||+|+.+++++.. ..+|+++|.++++++..++|....++ ++++++.+++-+
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~ 95 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE 95 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence 4667778777776654 889999999999999999955 57899999999999999999999997 799999999999
Q ss_pred CCCCC-CccEEEEC
Q psy13204 124 LAPSL-QGDVVFLS 136 (189)
Q Consensus 124 ~~~~~-~~D~v~~n 136 (189)
.+++. ++|.||+.
T Consensus 96 ~L~~~~~~daiFIG 109 (187)
T COG2242 96 ALPDLPSPDAIFIG 109 (187)
T ss_pred hhcCCCCCCEEEEC
Confidence 87544 69999994
No 68
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.39 E-value=4.8e-12 Score=97.71 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=72.3
Q ss_pred HHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204 52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 129 (189)
Q Consensus 52 ~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 129 (189)
.+.+.+++.+ .++.+|+|+|||+|.++..+++.+.+++++|+++.+++.+++++.. . .+++++++|+.+.. ...
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~-~~~ 91 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVD-LPE 91 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCC-chh
Confidence 3555565554 3478999999999999999999988999999999999999988754 2 47999999998864 235
Q ss_pred ccEEEECCCCCCC
Q psy13204 130 GDVVFLSPPWGGP 142 (189)
Q Consensus 130 ~D~v~~npp~~~~ 142 (189)
+|.|++||||+..
T Consensus 92 ~d~Vv~NlPy~i~ 104 (258)
T PRK14896 92 FNKVVSNLPYQIS 104 (258)
T ss_pred ceEEEEcCCcccC
Confidence 8999999999864
No 69
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=3.1e-12 Score=93.65 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 137 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np 137 (189)
+.+|+|+|||+|..++.++.. ..+|+|+|.++.+++.++++++..++ .+++++++|+.+.....+||+|+++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh
Confidence 889999999999999998866 46899999999999999999998888 47999999998875557899999986
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=5.9e-13 Score=103.22 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=71.4
Q ss_pred cchhhhhhhcCCcccCCCcccccChH---H----HHHHHHHh--CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCH
Q psy13204 26 GLEYFELTLADADNDATESWYSVTPE---K----VAQHIASR--CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDP 95 (189)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~ 95 (189)
+.+++...++..+.++. ++|....+ + ..+.+.+. +++|.+|||+|||.|++++.+++. |.+|+|+.+|+
T Consensus 17 ~ndfy~l~Ld~~m~YS~-~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~ 95 (273)
T PF02353_consen 17 GNDFYRLFLDPTMKYSC-AYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE 95 (273)
T ss_dssp -HHHHTTTS-TT---S-----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H
T ss_pred cHHHHHHhcCCCCCCCC-eecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH
Confidence 44555555555555443 33333222 1 22333443 345999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 96 AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
+..+.+++.+...|+.+.+++.+.|..+... +||.|++--.+.+.
T Consensus 96 ~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~fD~IvSi~~~Ehv 140 (273)
T PF02353_consen 96 EQAEYARERIREAGLEDRVEVRLQDYRDLPG--KFDRIVSIEMFEHV 140 (273)
T ss_dssp HHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGT
T ss_pred HHHHHHHHHHHhcCCCCceEEEEeeccccCC--CCCEEEEEechhhc
Confidence 9999999999999998889999999988743 99999985444443
No 71
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.38 E-value=3.7e-12 Score=96.68 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=76.9
Q ss_pred HHHHHhCC--CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204 55 QHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL 128 (189)
Q Consensus 55 ~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 128 (189)
+.++..+. ++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++....+. .+++++++|+.+.. +..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence 33444443 4789999999999999999876 35899999999999999999887777 58999999998765 557
Q ss_pred CccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204 129 QGDVVFLSPPWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 129 ~~D~v~~npp~~~~~~~~-~~~~~~~~l~~ 157 (189)
+||+|+++.+++...... ....+.++|++
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKP 143 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHHcCc
Confidence 899999987766533222 22234445543
No 72
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.38 E-value=1.1e-11 Score=93.25 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=71.9
Q ss_pred HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204 53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P 126 (189)
Q Consensus 53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~ 126 (189)
....+.+.+ +++.+|||+|||+|.++..+++... +|+++|+++++++.|++++...++ ++++++++|..+.. .
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc
Confidence 334444443 3488999999999999999998743 499999999999999999999988 68999999998754 3
Q ss_pred CCCccEEEECCCCCC
Q psy13204 127 SLQGDVVFLSPPWGG 141 (189)
Q Consensus 127 ~~~~D~v~~npp~~~ 141 (189)
...||+|+++++...
T Consensus 144 ~~~fD~Ii~~~~~~~ 158 (215)
T TIGR00080 144 LAPYDRIYVTAAGPK 158 (215)
T ss_pred cCCCCEEEEcCCccc
Confidence 458999999877654
No 73
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.38 E-value=5.7e-12 Score=95.67 Aligned_cols=73 Identities=34% Similarity=0.511 Sum_probs=55.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 135 (189)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.|+++....+. .+++++++|+.+.+ ++++||+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhcCCCCceeEEEH
Confidence 44889999999999999999876 35899999999999999999998877 49999999999987 7789999998
No 74
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=1.8e-12 Score=99.48 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=76.5
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEE
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVF 134 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 134 (189)
..++++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++++...+...+++++++|+.+... ..+|+|+
T Consensus 52 ~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv 130 (247)
T PRK15451 52 RFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVV 130 (247)
T ss_pred HhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEe
Confidence 34556889999999999999888762 579999999999999999999888775689999999987643 4589999
Q ss_pred ECCCCCCCcccc---ccccccccCcC
Q psy13204 135 LSPPWGGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 135 ~npp~~~~~~~~---~~~~~~~~l~~ 157 (189)
++...+...... ....+.+.|++
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~Lkp 156 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNP 156 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCC
Confidence 988777654322 23345556643
No 75
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=6.7e-13 Score=105.06 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~ 142 (189)
+.+|||+|||+|.++..+++.+.+|+|+|.++++++.|+.+....+...+++++++|+.+.. +..+||+|++.-..++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 66999999999999999999899999999999999999988776655457999999998765 45689999996666554
Q ss_pred cccc-ccccccccCcCCCCchhH
Q psy13204 143 EYAR-SSFSIDNIFPEQGGGRRL 164 (189)
Q Consensus 143 ~~~~-~~~~~~~~l~~~~~g~~~ 164 (189)
.... ....+.+++++ ||..+
T Consensus 212 ~d~~~~L~~l~r~LkP--GG~li 232 (322)
T PLN02396 212 ANPAEFCKSLSALTIP--NGATV 232 (322)
T ss_pred CCHHHHHHHHHHHcCC--CcEEE
Confidence 4333 34456666744 35544
No 76
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.37 E-value=1.3e-12 Score=100.41 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=75.1
Q ss_pred HHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204 53 VAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ 129 (189)
Q Consensus 53 ~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 129 (189)
+...+++.++. +.+|||+|||+|.++..+++.+.+++++|+|+.+++.++++.. ...++++|+.+.+ +..+
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCc
Confidence 44455555543 6789999999999999998889999999999999999887642 3467889988765 5568
Q ss_pred ccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204 130 GDVVFLSPPWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 130 ~D~v~~npp~~~~~~~~-~~~~~~~~l~~ 157 (189)
||+|+++.++++..... ....+.+++++
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~ 132 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRP 132 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCC
Confidence 99999999888654333 23345556644
No 77
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.35 E-value=1.6e-12 Score=101.93 Aligned_cols=95 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCCc
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~~ 143 (189)
+.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.+++++...++ ++++.+.|+.......+||+|++...++...
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 56999999999999999999999999999999999999999988887 7888888887654456899999988777544
Q ss_pred ccc---ccccccccCcCCCCch
Q psy13204 144 YAR---SSFSIDNIFPEQGGGR 162 (189)
Q Consensus 144 ~~~---~~~~~~~~l~~~~~g~ 162 (189)
... ....+.+++++ ||+
T Consensus 199 ~~~~~~~l~~~~~~Lkp--gG~ 218 (287)
T PRK12335 199 RERIPAIIKNMQEHTNP--GGY 218 (287)
T ss_pred HHHHHHHHHHHHHhcCC--CcE
Confidence 222 23345566644 355
No 78
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.35 E-value=7e-12 Score=108.93 Aligned_cols=92 Identities=30% Similarity=0.422 Sum_probs=76.6
Q ss_pred HHHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhC------------------------------------------
Q psy13204 51 EKVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVC------------------------------------------ 85 (189)
Q Consensus 51 ~~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~------------------------------------------ 85 (189)
+.++..++..... +..++|++||+|++.++++..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 6677766665543 6799999999999999997631
Q ss_pred --CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---CCCccEEEECCCCCCC
Q psy13204 86 --QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGGP 142 (189)
Q Consensus 86 --~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~npp~~~~ 142 (189)
.+++|+|+++.+++.|+.|+..+|+.+.+++.++|+.+... ..++|+|++||||...
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 25899999999999999999999997779999999988752 2469999999999863
No 79
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=8.9e-12 Score=102.65 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS 136 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n 136 (189)
.++.+|||+|||+|+.+..++.. +.+|+++|+++.+++.+++|+...|+ .+++++++|+.+.. ...+||.|++|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhhhccCCEEEEC
Confidence 44889999999999999999875 57899999999999999999999998 46899999988764 24579999999
Q ss_pred CCCCCCcccc
Q psy13204 137 PPWGGPEYAR 146 (189)
Q Consensus 137 pp~~~~~~~~ 146 (189)
|||.+.+...
T Consensus 315 aPCsg~G~~~ 324 (431)
T PRK14903 315 APCTSLGTAR 324 (431)
T ss_pred CCCCCCcccc
Confidence 9998876543
No 80
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=3.1e-12 Score=98.43 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=79.1
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 139 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~ 139 (189)
+++|.+|||+|||.|.+++.+|+. +.+|+|+++|++..+.+++.+...|+..+++++..|..++.+ .||.|++=-.|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmf 147 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMF 147 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc--ccceeeehhhH
Confidence 355999999999999999999998 899999999999999999999999997789999999988843 49999997777
Q ss_pred CCCcccc---ccccccccCcC
Q psy13204 140 GGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 140 ~~~~~~~---~~~~~~~~l~~ 157 (189)
.+.+... ......++|++
T Consensus 148 Ehvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 148 EHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred HHhCcccHHHHHHHHHhhcCC
Confidence 7666533 22235556644
No 81
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=2.9e-12 Score=98.80 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=72.2
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ +++++++|+.+..+..+||+|+++..++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence 3789999999999999999887 67999999999999998652 5688999998776567899999999998
Q ss_pred CCcccc-ccccccccCcCCCCchhH
Q psy13204 141 GPEYAR-SSFSIDNIFPEQGGGRRL 164 (189)
Q Consensus 141 ~~~~~~-~~~~~~~~l~~~~~g~~~ 164 (189)
+..... ....+.+.|++ ||..+
T Consensus 101 ~~~d~~~~l~~~~~~Lkp--gG~l~ 123 (255)
T PRK14103 101 WVPEHADLLVRWVDELAP--GSWIA 123 (255)
T ss_pred hCCCHHHHHHHHHHhCCC--CcEEE
Confidence 764333 33345566644 35533
No 82
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.33 E-value=7.3e-12 Score=99.22 Aligned_cols=97 Identities=29% Similarity=0.501 Sum_probs=70.6
Q ss_pred cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHH---------hCCeEEEEeCCHHHHHHHHHHHHHhCCCCc-eE
Q psy13204 48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAA---------VCQKVISIDIDPAKLRLAQHNASVYGVSHK-IQ 115 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~ 115 (189)
.||..+.++++..+.. +.+|+|++||+|++..++.+ ...+++|+|+++.++..|+.|+...+.... ..
T Consensus 29 ~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~ 108 (311)
T PF02384_consen 29 YTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN 108 (311)
T ss_dssp ---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred ehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence 3777888888888765 66899999999999999876 256899999999999999999887776322 46
Q ss_pred EEeCCcccCCC---CCCccEEEECCCCCCCcc
Q psy13204 116 FIQGDFFALAP---SLQGDVVFLSPPWGGPEY 144 (189)
Q Consensus 116 ~~~~d~~~~~~---~~~~D~v~~npp~~~~~~ 144 (189)
+.++|.+.... ...||+|++||||...++
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-
T ss_pred ccccccccccccccccccccccCCCCcccccc
Confidence 88999876642 358999999999998743
No 83
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2.7e-11 Score=99.91 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=69.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS 136 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n 136 (189)
.++.+|||+|||+|+.+..+++.+ .+|+++|+++.+++.+++|+...|+ +++++++|+.+.. +..+||.|++|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEEC
Confidence 348899999999999999998874 5899999999999999999999887 4789999998653 34579999999
Q ss_pred CCCCCCc
Q psy13204 137 PPWGGPE 143 (189)
Q Consensus 137 pp~~~~~ 143 (189)
|||.+.+
T Consensus 321 ~Pcs~~G 327 (427)
T PRK10901 321 APCSATG 327 (427)
T ss_pred CCCCccc
Confidence 9998644
No 84
>PLN02672 methionine S-methyltransferase
Probab=99.32 E-value=6.4e-12 Score=111.89 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=68.9
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCC---------------CceEEEeCCcccCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS---------------HKIQFIQGDFFALAP 126 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~d~~~~~~ 126 (189)
+.+|+|+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|+..+++. ++++++++|+.+..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999886 368999999999999999999886532 368999999988764
Q ss_pred C--CCccEEEECCCCCCCcc
Q psy13204 127 S--LQGDVVFLSPPWGGPEY 144 (189)
Q Consensus 127 ~--~~~D~v~~npp~~~~~~ 144 (189)
. ..||+|++||||-....
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e 218 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPN 218 (1082)
T ss_pred ccCCceEEEEECCCcCCCcc
Confidence 3 36999999999987554
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=5.2e-11 Score=88.95 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=72.5
Q ss_pred HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204 53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P 126 (189)
Q Consensus 53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~ 126 (189)
+...+.+.+. ++.+|||+|||+|..+..+++. +.+|+++|+++++++.|++|+...++..+++++++|..+.. .
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 4455555543 4789999999999999998876 36899999999999999999998887556899999998755 3
Q ss_pred CCCccEEEECCCCCC
Q psy13204 127 SLQGDVVFLSPPWGG 141 (189)
Q Consensus 127 ~~~~D~v~~npp~~~ 141 (189)
...||+|+++.+...
T Consensus 140 ~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 140 HAPFDAIIVTAAAST 154 (205)
T ss_pred CCCccEEEEccCcch
Confidence 458999999876543
No 86
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.32 E-value=1.3e-11 Score=95.44 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHH--hCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASV--YGVSHKIQFIQGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 135 (189)
+++.+|||+|||+|.++..+++. + .+|+|+|+|++|++.|+++... .+...+++++++|+.+.+ ++.+||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 44889999999999999998876 3 5899999999999999877542 222247899999998876 5678999999
Q ss_pred CCCCCCCcccc-ccccccccCcC
Q psy13204 136 SPPWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 136 npp~~~~~~~~-~~~~~~~~l~~ 157 (189)
+-.++...... ....+.++|++
T Consensus 152 ~~~l~~~~d~~~~l~ei~rvLkp 174 (261)
T PLN02233 152 GYGLRNVVDRLKAMQEMYRVLKP 174 (261)
T ss_pred ecccccCCCHHHHHHHHHHHcCc
Confidence 76665543222 33456666644
No 87
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=4.5e-12 Score=97.79 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++. .++.++.+|+.++.+..+||+|+++..++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDLIFANASLQ 104 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccEEEEccChh
Confidence 3789999999999999999886 578999999999999998764 36789999998776667899999999988
Q ss_pred CCcccc-ccccccccCcC
Q psy13204 141 GPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 141 ~~~~~~-~~~~~~~~l~~ 157 (189)
+..... ....+.+.|++
T Consensus 105 ~~~d~~~~l~~~~~~Lkp 122 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAP 122 (258)
T ss_pred hCCCHHHHHHHHHHhcCC
Confidence 764333 33445566644
No 88
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.6e-11 Score=100.19 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVV 133 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v 133 (189)
+++.+|||+|||+|+.+..+++. ..+|+++|+++.+++.+++|+...|+ .+++++++|+.+.. ...+||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEE
Confidence 34889999999999999999876 35899999999999999999999998 47999999998764 13579999
Q ss_pred EECCCCCCCccc
Q psy13204 134 FLSPPWGGPEYA 145 (189)
Q Consensus 134 ~~npp~~~~~~~ 145 (189)
++||||.+.+..
T Consensus 330 l~DaPCSg~G~~ 341 (434)
T PRK14901 330 LLDAPCSGLGTL 341 (434)
T ss_pred EEeCCCCccccc
Confidence 999999876543
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.30 E-value=5.3e-11 Score=88.40 Aligned_cols=90 Identities=26% Similarity=0.420 Sum_probs=72.8
Q ss_pred cChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204 48 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 122 (189)
.+.++++......+. ++.+|+|+|||+|.+++.+++. +.+|+++|+++.+++.+++|+..+++..++.++++|..
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 455666665555543 4889999999999999999875 46899999999999999999999886568999999987
Q ss_pred cCCC--CCCccEEEECC
Q psy13204 123 ALAP--SLQGDVVFLSP 137 (189)
Q Consensus 123 ~~~~--~~~~D~v~~np 137 (189)
+..+ ...||.|+++.
T Consensus 103 ~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 103 EILFTINEKFDRIFIGG 119 (198)
T ss_pred hhHhhcCCCCCEEEECC
Confidence 7542 35799999964
No 90
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.30 E-value=1.4e-11 Score=99.79 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=75.3
Q ss_pred CcccccChH---HHHHHHHHhCCC---CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCce
Q psy13204 43 ESWYSVTPE---KVAQHIASRCKA---SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKI 114 (189)
Q Consensus 43 ~~~~~~~~~---~~~~~~~~~~~~---~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 114 (189)
..|||.... .+...+++.+.. +.+|+|++||+|.+++.++... .+|+++|+++.+++.+++|++.+++ .++
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~ 109 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENE 109 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-Cce
Confidence 478887653 233344443332 3689999999999999998763 3899999999999999999999998 467
Q ss_pred EEEeCCcccCCC-CCCccEEEECCC
Q psy13204 115 QFIQGDFFALAP-SLQGDVVFLSPP 138 (189)
Q Consensus 115 ~~~~~d~~~~~~-~~~~D~v~~npp 138 (189)
++.++|+...+. ...||+|++|||
T Consensus 110 ~v~~~Da~~~l~~~~~fD~V~lDP~ 134 (382)
T PRK04338 110 KVFNKDANALLHEERKFDVVDIDPF 134 (382)
T ss_pred EEEhhhHHHHHhhcCCCCEEEECCC
Confidence 899999977654 467999999997
No 91
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=4.7e-11 Score=90.02 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=64.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 138 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp 138 (189)
++.+|||+|||+|.++..++..+.+++|+|++++++..|++++...+...++.+.++|+.+.. .+||+|++.-.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhH
Confidence 378999999999999999998888999999999999999999987776557999999988764 78999987433
No 92
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.29 E-value=8e-11 Score=86.66 Aligned_cols=91 Identities=25% Similarity=0.335 Sum_probs=72.9
Q ss_pred ccChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc
Q psy13204 47 SVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122 (189)
Q Consensus 47 ~~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 122 (189)
..+.+.+...+...+ .++.+|||+|||+|.+++.+++. ..+++++|+++.+++.|++|+..+++ .+++++++|..
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~ 91 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAP 91 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCch
Confidence 345666666665554 34889999999999999999887 46899999999999999999988887 47999999875
Q ss_pred cCCCCCCccEEEECCCC
Q psy13204 123 ALAPSLQGDVVFLSPPW 139 (189)
Q Consensus 123 ~~~~~~~~D~v~~npp~ 139 (189)
... ...||+|+++...
T Consensus 92 ~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 92 IEL-PGKADAIFIGGSG 107 (187)
T ss_pred hhc-CcCCCEEEECCCc
Confidence 433 3579999997543
No 93
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=3.8e-11 Score=99.49 Aligned_cols=82 Identities=28% Similarity=0.410 Sum_probs=70.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEEC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLS 136 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~n 136 (189)
.++.+|||+|||+|+.+..+++. ..+++++|+++.+++.+++|+...|+. +++++++|+.+... ...||+|++|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 34789999999999999999875 468999999999999999999999984 69999999987642 2579999999
Q ss_pred CCCCCCcc
Q psy13204 137 PPWGGPEY 144 (189)
Q Consensus 137 pp~~~~~~ 144 (189)
|||.+.+.
T Consensus 328 ~Pcsg~G~ 335 (444)
T PRK14902 328 APCSGLGV 335 (444)
T ss_pred CCCCCCee
Confidence 99987553
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=4.8e-11 Score=93.56 Aligned_cols=88 Identities=25% Similarity=0.208 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 129 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 129 (189)
..+.+.+.....++.+|+|+|||+|.+++.+++.+. +|+|+|+++.+++.|++|+..+++...+.+..++.... ...+
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~ 225 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGK 225 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCC
Confidence 334444444455689999999999999999988765 79999999999999999999998865677777764333 3468
Q ss_pred ccEEEECCCC
Q psy13204 130 GDVVFLSPPW 139 (189)
Q Consensus 130 ~D~v~~npp~ 139 (189)
||+|++|...
T Consensus 226 fDlVvan~~~ 235 (288)
T TIGR00406 226 ADVIVANILA 235 (288)
T ss_pred ceEEEEecCH
Confidence 9999999754
No 95
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=6.6e-12 Score=93.56 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=64.7
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc-ccCC---CCCCccEEEEC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF-FALA---PSLQGDVVFLS 136 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~---~~~~~D~v~~n 136 (189)
.+.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|++++...++ .++.++++|+ .... +..+||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3789999999999999999876 46899999999999999999988887 5899999999 4332 45689999997
Q ss_pred CCC
Q psy13204 137 PPW 139 (189)
Q Consensus 137 pp~ 139 (189)
.|.
T Consensus 119 ~~~ 121 (202)
T PRK00121 119 FPD 121 (202)
T ss_pred CCC
Confidence 654
No 96
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.27 E-value=1.9e-11 Score=93.41 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=73.2
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEEC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 136 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~n 136 (189)
..++.+|||+|||+|..+..+++. +.+++|+|+++.|++.|++++...+...+++++++|+.+... ..+|+|+++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~ 129 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN 129 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeee
Confidence 455789999999999999999874 578999999999999999998776654578999999988753 358999987
Q ss_pred CCCCCCcccc---ccccccccCcC
Q psy13204 137 PPWGGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 137 pp~~~~~~~~---~~~~~~~~l~~ 157 (189)
-..+...... ....+.+.+++
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~Lkp 153 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNP 153 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCC
Confidence 7766543221 23345555543
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=3.9e-11 Score=89.49 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=64.1
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 137 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np 137 (189)
.++++.+|||+|||+|..+..+++. +.+++|+|+|+++++.|+++.. ++.+.++|+.+..+..+||+|+++-
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLTKG 113 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEECC
Confidence 4555789999999999999999886 6899999999999999987642 5678889988744677999999987
Q ss_pred CCCCC
Q psy13204 138 PWGGP 142 (189)
Q Consensus 138 p~~~~ 142 (189)
..++.
T Consensus 114 vL~hl 118 (204)
T TIGR03587 114 VLIHI 118 (204)
T ss_pred hhhhC
Confidence 76654
No 98
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.27 E-value=1.7e-11 Score=81.25 Aligned_cols=67 Identities=34% Similarity=0.453 Sum_probs=57.6
Q ss_pred EEEecCCCChHHHHHHHhC-----CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204 67 VIDGFCGCGGNTIQFAAVC-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 135 (189)
|||+|||+|..+..+.+.. .+++|+|+|+++++.++++....+. +++++++|+.++. ...+||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999874 7899999999999999999887766 8999999998876 4569999999
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=7.7e-11 Score=97.17 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP 137 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~np 137 (189)
++.+|||+|||+|+.+..+++. ..+++++|+++++++.+++|++..|+...+.+..+|..... +..+||.|++||
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 4889999999999999999886 36899999999999999999999988433445777766543 346799999999
Q ss_pred CCCCCcccc
Q psy13204 138 PWGGPEYAR 146 (189)
Q Consensus 138 p~~~~~~~~ 146 (189)
||.+.+...
T Consensus 318 PcSg~G~~~ 326 (426)
T TIGR00563 318 PCSATGVIR 326 (426)
T ss_pred CCCCCcccc
Confidence 999876543
No 100
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=87.31 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=69.3
Q ss_pred HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204 53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P 126 (189)
Q Consensus 53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~ 126 (189)
+...+.+.+ +++.+|||+|||+|..+..+++. ..+|+++|+++++++.+++++...+. .+++++++|..... +
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc
Confidence 444444443 45899999999999999998876 26899999999999999999998887 58999999987654 4
Q ss_pred CCCccEEEECC
Q psy13204 127 SLQGDVVFLSP 137 (189)
Q Consensus 127 ~~~~D~v~~np 137 (189)
...||+|+++-
T Consensus 143 ~~~fD~I~~~~ 153 (212)
T PRK13942 143 NAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEECC
Confidence 56899999864
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=1.6e-10 Score=86.76 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=72.0
Q ss_pred HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204 53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ 129 (189)
Q Consensus 53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 129 (189)
+...+...+ .++.+|||+|||+|..+..+++.+.+++++|+++++++.|++++...++ .+++++++|..+.. ....
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCCcCCC
Confidence 344444444 3478999999999999998888877999999999999999999998888 46999999987654 3368
Q ss_pred ccEEEECCCCCC
Q psy13204 130 GDVVFLSPPWGG 141 (189)
Q Consensus 130 ~D~v~~npp~~~ 141 (189)
||+|+++.++..
T Consensus 145 fD~I~~~~~~~~ 156 (212)
T PRK00312 145 FDRILVTAAAPE 156 (212)
T ss_pred cCEEEEccCchh
Confidence 999999876654
No 102
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.26 E-value=2.4e-10 Score=78.03 Aligned_cols=87 Identities=30% Similarity=0.386 Sum_probs=68.6
Q ss_pred HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204 52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-- 125 (189)
Q Consensus 52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 125 (189)
.+...+...+. .+.+|+|+|||+|.++..+++. +.+++++|+++.+++.+++++...+. .+++++.+|.....
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChh
Confidence 34444444443 3779999999999999999987 46899999999999999999988877 47899999876533
Q ss_pred CCCCccEEEECCCC
Q psy13204 126 PSLQGDVVFLSPPW 139 (189)
Q Consensus 126 ~~~~~D~v~~npp~ 139 (189)
...+||+|+++.+.
T Consensus 85 ~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 85 SLPEPDRVFIGGSG 98 (124)
T ss_pred hcCCCCEEEECCcc
Confidence 23589999996543
No 103
>PRK10742 putative methyltransferase; Provisional
Probab=99.25 E-value=5.7e-11 Score=89.78 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=71.3
Q ss_pred CCCC--EEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh------C--CCCceEEEeCCcccCCC--CCC
Q psy13204 62 KASD--VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY------G--VSHKIQFIQGDFFALAP--SLQ 129 (189)
Q Consensus 62 ~~~~--~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~d~~~~~~--~~~ 129 (189)
+++. +|||+++|+|..++.++..|++|+++|.++......++++... + +..+++++++|+.+++. ...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~ 164 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence 3455 8999999999999999999999999999999999999888764 2 22478999999998872 247
Q ss_pred ccEEEECCCCCCCcccc
Q psy13204 130 GDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 130 ~D~v~~npp~~~~~~~~ 146 (189)
||+|++||||.......
T Consensus 165 fDVVYlDPMfp~~~ksa 181 (250)
T PRK10742 165 PQVVYLDPMFPHKQKSA 181 (250)
T ss_pred CcEEEECCCCCCCcccc
Confidence 99999999999865443
No 104
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=5.3e-11 Score=86.44 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=65.1
Q ss_pred HHHHHhCCCCCEEEEecCCCChHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCc
Q psy13204 55 QHIASRCKASDVVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQG 130 (189)
Q Consensus 55 ~~~~~~~~~~~~vlD~g~G~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 130 (189)
+.+++.++++.+|||+|||.|.+...+.+ .+.+.+|+|++++.+..|.++ .+.++++|+.+-+ ++.+|
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCc
Confidence 45677888899999999999999999977 488899999999998776544 5679999988765 77899
Q ss_pred cEEEECCCCCC
Q psy13204 131 DVVFLSPPWGG 141 (189)
Q Consensus 131 D~v~~npp~~~ 141 (189)
|.|+++-..+.
T Consensus 77 D~VIlsqtLQ~ 87 (193)
T PF07021_consen 77 DYVILSQTLQA 87 (193)
T ss_pred cEEehHhHHHh
Confidence 99999644443
No 105
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.24 E-value=8.7e-11 Score=90.34 Aligned_cols=82 Identities=28% Similarity=0.398 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 129 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 129 (189)
..+.+.+.....++.+|+|+|||+|.+++.+++.+.. |+|+|+|+.+++.|++|+..+++...+.+..+|. +
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~ 179 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------K 179 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------C
Confidence 3445555555556899999999999999988887664 9999999999999999999888743444444332 7
Q ss_pred ccEEEECCCC
Q psy13204 130 GDVVFLSPPW 139 (189)
Q Consensus 130 ~D~v~~npp~ 139 (189)
||+|++|...
T Consensus 180 fD~Vvani~~ 189 (250)
T PRK00517 180 ADVIVANILA 189 (250)
T ss_pred cCEEEEcCcH
Confidence 9999998643
No 106
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.24 E-value=3.7e-12 Score=82.84 Aligned_cols=71 Identities=30% Similarity=0.294 Sum_probs=57.6
Q ss_pred EEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204 68 IDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 68 lD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~ 142 (189)
||+|||+|..+..+++. +.+++++|+++++++.++++.... ++.++++|..+.+ ++.+||+|+++--++..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec
Confidence 79999999999999999 899999999999999999887644 4459999999887 77899999996555543
No 107
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.23 E-value=1e-10 Score=90.15 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=70.6
Q ss_pred HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC
Q psy13204 52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ 129 (189)
Q Consensus 52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 129 (189)
.+.+.+++.+. ++..|+|+|||+|.++..+++.+.+++++|+++.+++.++.+... ..+++++++|+.+... ..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~-~~ 91 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL-PD 91 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh-hH
Confidence 34555555443 378999999999999999999988999999999999999877643 2478999999988753 24
Q ss_pred cc---EEEECCCCCCC
Q psy13204 130 GD---VVFLSPPWGGP 142 (189)
Q Consensus 130 ~D---~v~~npp~~~~ 142 (189)
+| +|++|+||+..
T Consensus 92 ~d~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 92 FPKQLKVVSNLPYNIS 107 (253)
T ss_pred cCCcceEEEcCChhhH
Confidence 56 99999999863
No 108
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.23 E-value=1.8e-11 Score=91.77 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEeCCcccCCC--CC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-----------GVSHKIQFIQGDFFALAP--SL 128 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~--~~ 128 (189)
+++.+|||+|||.|..++++|++|.+|+|+|+|+.+++.+....... .-..++++.++|+.+... ..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 45789999999999999999999999999999999999864322110 001368999999998763 34
Q ss_pred CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204 129 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 129 ~~D~v~~npp~~~~~~~~---~~~~~~~~l~~ 157 (189)
.||.|+-.--+++..... ....+.+++++
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp 144 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPP 144 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCC
Confidence 688887655555443222 22346667754
No 109
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=4.3e-11 Score=93.12 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=74.7
Q ss_pred hhhhhhhcCCcccCCCcccccChHHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHh-----CCeEEEEeCCHHHHHHH
Q psy13204 28 EYFELTLADADNDATESWYSVTPEKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLA 101 (189)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~-----~~~v~~vD~~~~~~~~a 101 (189)
++..+.+..+..+...++|+...+.+.+.+.+.+.. ..+|||+|||+|.++..+++. +.+++|+|+|+.+++.|
T Consensus 49 ~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A 128 (272)
T PRK11088 49 GDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYA 128 (272)
T ss_pred CcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHH
Confidence 344444443333334466776666666666665543 578999999999999998765 23789999999999998
Q ss_pred HHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204 102 QHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 136 (189)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n 136 (189)
.++. .++.+.++|+.+.+ ++.+||+|++.
T Consensus 129 ~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 129 AKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred HHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 7653 36789999988765 56789999973
No 110
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.22 E-value=4.4e-11 Score=93.05 Aligned_cols=96 Identities=23% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 136 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n 136 (189)
++++.+|||+|||+|..++.+++. + .+|+++|+++.+++.|+++....+. .+++++.+|+.+.. ++..||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEc
Confidence 455899999999999988877765 3 4799999999999999999988887 58899999988765 45689999998
Q ss_pred CCCCCCcccc-ccccccccCcC
Q psy13204 137 PPWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 137 pp~~~~~~~~-~~~~~~~~l~~ 157 (189)
..++...... ....+.++|++
T Consensus 154 ~v~~~~~d~~~~l~~~~r~Lkp 175 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKP 175 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCC
Confidence 7776543222 23345555644
No 111
>KOG3191|consensus
Probab=99.22 E-value=1.4e-10 Score=82.83 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=70.8
Q ss_pred CCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
...++|+|||+|..+.++++. + ....+.|+||++++..++.++.++. .++.++.|...-...+++|+++.||||.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcC
Confidence 677899999999999999887 3 3467899999999999999999987 7899999999888779999999999999
Q ss_pred CCcccc
Q psy13204 141 GPEYAR 146 (189)
Q Consensus 141 ~~~~~~ 146 (189)
..+...
T Consensus 122 pt~~~~ 127 (209)
T KOG3191|consen 122 PTSDEE 127 (209)
T ss_pred cCCccc
Confidence 755443
No 112
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.22 E-value=5.2e-11 Score=88.20 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=66.6
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEEC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLS 136 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~n 136 (189)
....+||+|||+|.++..+++. ..+++|+|+++.+++.|+.++...++ .+++++++|+.+.. +...+|.|++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 3678999999999999999987 56899999999999999999998888 48999999997643 34589999999
Q ss_pred CCCC
Q psy13204 137 PPWG 140 (189)
Q Consensus 137 pp~~ 140 (189)
.|-.
T Consensus 95 ~pdp 98 (194)
T TIGR00091 95 FPDP 98 (194)
T ss_pred CCCc
Confidence 7644
No 113
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.22 E-value=2.3e-11 Score=89.27 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=66.7
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
..+|+|+|||+|..+..++++ +++++|+|-|++|++.|++... +++|..+|+.++.+....|++++|..+++
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p~~~~dllfaNAvlqW 104 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKPEQPTDLLFANAVLQW 104 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCCCCccchhhhhhhhhh
Confidence 779999999999999999998 8899999999999999876653 88999999999988889999999999886
Q ss_pred C
Q psy13204 142 P 142 (189)
Q Consensus 142 ~ 142 (189)
.
T Consensus 105 l 105 (257)
T COG4106 105 L 105 (257)
T ss_pred c
Confidence 4
No 114
>KOG1270|consensus
Probab=99.21 E-value=1e-11 Score=93.57 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=59.2
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC-----CceEEEeCCcccCCCCCCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-----HKIQFIQGDFFALAPSLQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~npp 138 (189)
|..|||+|||.|.++..+++.|++|+|+|.++.+++.|++........ -++++.+.|..+.- ..||+|++--.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence 477999999999999999999999999999999999999885443221 13566677766653 45999998444
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
+.+
T Consensus 168 leH 170 (282)
T KOG1270|consen 168 LEH 170 (282)
T ss_pred HHH
Confidence 433
No 115
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.21 E-value=6e-11 Score=91.84 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 139 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~ 139 (189)
+++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++... ..++.+.++|+.+.. +..+||+|++...+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhH
Confidence 45889999999999999988765 77999999999999999987653 247899999988754 56789999996554
Q ss_pred CCCcc---ccccccccccCcCCCCchh
Q psy13204 140 GGPEY---ARSSFSIDNIFPEQGGGRR 163 (189)
Q Consensus 140 ~~~~~---~~~~~~~~~~l~~~~~g~~ 163 (189)
.+... ......+.++|++ ||..
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkP--GG~l 152 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKP--NGIL 152 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCC--CcEE
Confidence 44321 1133445666744 3553
No 116
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.21 E-value=1.4e-10 Score=88.21 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=70.6
Q ss_pred HHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----
Q psy13204 54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---- 126 (189)
Q Consensus 54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---- 126 (189)
...++...+ +++|||+|||+|..++++++. +.+++++|+++++++.|++|+..+++.++++++.+|+.+.++
T Consensus 60 L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 60 LSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 334444434 889999999999998888775 468999999999999999999999997789999999987641
Q ss_pred ---CCCccEEEECCCC
Q psy13204 127 ---SLQGDVVFLSPPW 139 (189)
Q Consensus 127 ---~~~~D~v~~npp~ 139 (189)
..+||+|++|.+.
T Consensus 139 ~~~~~~fD~VfiDa~k 154 (234)
T PLN02781 139 NDPKPEFDFAFVDADK 154 (234)
T ss_pred CCCCCCCCEEEECCCH
Confidence 3589999999653
No 117
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=4.1e-11 Score=95.21 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=72.5
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
+.+|||+|||+|.++..++..+. .|+|+|.++.++..++......+...++.++.+|+.+......||+|++.-..++.
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H~ 202 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHR 202 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhcc
Confidence 78999999999999999998865 59999999998876554433333224789999999887656789999985444433
Q ss_pred c-cccccccccccCcCCCCchhHHH
Q psy13204 143 E-YARSSFSIDNIFPEQGGGRRLFQ 166 (189)
Q Consensus 143 ~-~~~~~~~~~~~l~~~~~g~~~~~ 166 (189)
. .......+.+.|++ ||..+++
T Consensus 203 ~dp~~~L~~l~~~Lkp--GG~lvl~ 225 (322)
T PRK15068 203 RSPLDHLKQLKDQLVP--GGELVLE 225 (322)
T ss_pred CCHHHHHHHHHHhcCC--CcEEEEE
Confidence 2 22244456667754 4665554
No 118
>PRK05785 hypothetical protein; Provisional
Probab=99.20 E-value=9.9e-11 Score=88.67 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG 130 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 130 (189)
+.+.+.....++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++ ..++++|+.+.+ ++.+|
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sf 111 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSF 111 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCE
Confidence 34444444445789999999999999999888 68999999999999998753 135688888776 67789
Q ss_pred cEEEECCCCCC
Q psy13204 131 DVVFLSPPWGG 141 (189)
Q Consensus 131 D~v~~npp~~~ 141 (189)
|+|++.-..+.
T Consensus 112 D~v~~~~~l~~ 122 (226)
T PRK05785 112 DVVMSSFALHA 122 (226)
T ss_pred EEEEecChhhc
Confidence 99999655543
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.19 E-value=1.3e-10 Score=97.19 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 139 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~ 139 (189)
+++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++.. +...++++.++|+.+.. +..+||+|++.-.+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence 44789999999999999999876 7899999999999999998875 33247899999998765 55689999997666
Q ss_pred CCCcccc-ccccccccCcCCCCchhH
Q psy13204 140 GGPEYAR-SSFSIDNIFPEQGGGRRL 164 (189)
Q Consensus 140 ~~~~~~~-~~~~~~~~l~~~~~g~~~ 164 (189)
.+..... ....+.+++++ ||..+
T Consensus 343 ~h~~d~~~~l~~~~r~Lkp--gG~l~ 366 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKP--GGKVL 366 (475)
T ss_pred cccCCHHHHHHHHHHHcCC--CeEEE
Confidence 6544333 33456666654 45533
No 120
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.18 E-value=2.7e-10 Score=91.81 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~npp 138 (189)
+..+||+|||+|.+++.+|+. ...++|+|+++.+++.|..++...++ .++.++++|+... .++.++|.|+++.|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 679999999999999999987 56899999999999999999999998 5899999998654 36778999999987
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
..+
T Consensus 202 dPW 204 (390)
T PRK14121 202 VPW 204 (390)
T ss_pred CCc
Confidence 654
No 121
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.18 E-value=4.8e-10 Score=83.11 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=69.8
Q ss_pred cChHHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204 48 VTPEKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 123 (189)
.++..+...+...+. ++.+|||+|||+|.+++.+++. +.+|+++|+++++++.+++|+...++ .+++++++|+.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~ 101 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPE 101 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHH
Confidence 345566666666554 4789999999999999999865 57899999999999999999998888 579999999865
Q ss_pred CCC--CCCccEEEECC
Q psy13204 124 LAP--SLQGDVVFLSP 137 (189)
Q Consensus 124 ~~~--~~~~D~v~~np 137 (189)
... ...+|.++++.
T Consensus 102 ~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG 117 (196)
T ss_pred HHhhCCCCCCEEEEEC
Confidence 321 12457777753
No 122
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.17 E-value=4.8e-11 Score=90.18 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred CEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
++|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....++..+++++.+|..+.+...+||+|++.-.+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999886 4689999999999999999998888877899999998665434589999986555543
Q ss_pred cccc-ccccccccCcC
Q psy13204 143 EYAR-SSFSIDNIFPE 157 (189)
Q Consensus 143 ~~~~-~~~~~~~~l~~ 157 (189)
.... ....+.++|++
T Consensus 81 ~~~~~~l~~~~~~Lkp 96 (224)
T smart00828 81 KDKMDLFSNISRHLKD 96 (224)
T ss_pred CCHHHHHHHHHHHcCC
Confidence 3222 23345566644
No 123
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3.2e-10 Score=86.53 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=74.3
Q ss_pred HHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC--
Q psy13204 53 VAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-- 128 (189)
Q Consensus 53 ~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 128 (189)
+.+.+++... +++.|+|+|+|.|.++..+++.+.+|+++|+++.+++..++..... ++++++++|+++..-..
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhhc
Confidence 4555555443 3789999999999999999999999999999999999988876522 58999999999987333
Q ss_pred CccEEEECCCCCCCccc
Q psy13204 129 QGDVVFLSPPWGGPEYA 145 (189)
Q Consensus 129 ~~D~v~~npp~~~~~~~ 145 (189)
.++.|++|.||+..+..
T Consensus 95 ~~~~vVaNlPY~Isspi 111 (259)
T COG0030 95 QPYKVVANLPYNISSPI 111 (259)
T ss_pred CCCEEEEcCCCcccHHH
Confidence 78999999999986543
No 124
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.16 E-value=1.1e-10 Score=92.25 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=72.6
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
+++|+|+|||+|.++..++..+. .|+|+|.|+.++..++......+...++.+...++.+......||+|++.-...+.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYHR 201 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhcc
Confidence 78999999999999999988875 69999999999877644333323224678888888877655689999997655544
Q ss_pred ccc-cccccccccCcCCCCchhHHH
Q psy13204 143 EYA-RSSFSIDNIFPEQGGGRRLFQ 166 (189)
Q Consensus 143 ~~~-~~~~~~~~~l~~~~~g~~~~~ 166 (189)
... .....+.+.|++ ||..+++
T Consensus 202 ~dp~~~L~el~r~Lkp--GG~Lvle 224 (314)
T TIGR00452 202 KSPLEHLKQLKHQLVI--KGELVLE 224 (314)
T ss_pred CCHHHHHHHHHHhcCC--CCEEEEE
Confidence 332 344566777755 4654443
No 125
>KOG0820|consensus
Probab=99.15 E-value=4.4e-10 Score=85.17 Aligned_cols=96 Identities=24% Similarity=0.296 Sum_probs=78.6
Q ss_pred ChHHHHHHHHH--hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC
Q psy13204 49 TPEKVAQHIAS--RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126 (189)
Q Consensus 49 ~~~~~~~~~~~--~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 126 (189)
++. +...+.+ .+++++.||++|.|+|.++..+...|++|+++|+++.|+....++..-...+...+++.+|.++. +
T Consensus 43 Np~-v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-d 120 (315)
T KOG0820|consen 43 NPL-VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-D 120 (315)
T ss_pred CHH-HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-C
Confidence 444 4444444 34558999999999999999999999999999999999999888876665556789999999887 3
Q ss_pred CCCccEEEECCCCCCCcccc
Q psy13204 127 SLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 127 ~~~~D~v~~npp~~~~~~~~ 146 (189)
...||.++.|.||+..+...
T Consensus 121 ~P~fd~cVsNlPyqISSp~v 140 (315)
T KOG0820|consen 121 LPRFDGCVSNLPYQISSPLV 140 (315)
T ss_pred CcccceeeccCCccccCHHH
Confidence 46899999999999866443
No 126
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.15 E-value=2.7e-10 Score=92.56 Aligned_cols=96 Identities=21% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++.. ++ .+++...|..+. ..+||+|++...++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCchh
Confidence 45889999999999999999876 7899999999999999998874 33 578888888765 36899999988777
Q ss_pred CCcccc---ccccccccCcCCCCchhHH
Q psy13204 141 GPEYAR---SSFSIDNIFPEQGGGRRLF 165 (189)
Q Consensus 141 ~~~~~~---~~~~~~~~l~~~~~g~~~~ 165 (189)
+.+... ....+.++|++ ||..++
T Consensus 240 hvg~~~~~~~l~~i~r~Lkp--GG~lvl 265 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKP--DGLFLL 265 (383)
T ss_pred hCChHHHHHHHHHHHHHcCC--CcEEEE
Confidence 654321 33456667755 465444
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.2e-10 Score=81.72 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=70.9
Q ss_pred HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCC
Q psy13204 53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQ 129 (189)
Q Consensus 53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~ 129 (189)
+...+.+.+ +++.+|||+|||+|..+.-+++...+|+.+|..++..+.|++|+...|+ .++.++++|...-. +...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCC
Confidence 334444443 4499999999999999999999988999999999999999999999999 47999999988766 4478
Q ss_pred ccEEEEC
Q psy13204 130 GDVVFLS 136 (189)
Q Consensus 130 ~D~v~~n 136 (189)
||.|+..
T Consensus 139 yD~I~Vt 145 (209)
T COG2518 139 YDRIIVT 145 (209)
T ss_pred cCEEEEe
Confidence 9999884
No 128
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.14 E-value=5.1e-10 Score=88.46 Aligned_cols=74 Identities=26% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGV----SHKIQFIQGDFFALAPSLQGDVVFLSPPW 139 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~D~v~~npp~ 139 (189)
+.+|||+|||+|.+++.+++.|.+|+|+|+|+.|++.|+++....+. ..++++.++|+.+. ...||+|++.-.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~vL 222 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDVL 222 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCEE
Confidence 67999999999999999999999999999999999999999876421 13578888887654 4679999875443
No 129
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.13 E-value=6.5e-10 Score=84.22 Aligned_cols=77 Identities=26% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++....+...++++..+|... ....||+|++.-.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhc
Confidence 4779999999999999999998889999999999999999998877765578999999432 3467999998655533
No 130
>PLN02476 O-methyltransferase
Probab=99.11 E-value=6.9e-10 Score=85.89 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=72.7
Q ss_pred HHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----
Q psy13204 54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---- 126 (189)
Q Consensus 54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---- 126 (189)
...++...+ +++|||+|+|+|..+++++.. +.+++++|.+++..+.|+++++..|+.++++++.+|+.+.++
T Consensus 110 L~~L~~~~~-ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~ 188 (278)
T PLN02476 110 LAMLVQILG-AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ 188 (278)
T ss_pred HHHHHHhcC-CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence 344444444 889999999999999999885 567999999999999999999999998789999999988652
Q ss_pred ---CCCccEEEECCCCC
Q psy13204 127 ---SLQGDVVFLSPPWG 140 (189)
Q Consensus 127 ---~~~~D~v~~npp~~ 140 (189)
..+||.||+|++..
T Consensus 189 ~~~~~~FD~VFIDa~K~ 205 (278)
T PLN02476 189 NGEGSSYDFAFVDADKR 205 (278)
T ss_pred cccCCCCCEEEECCCHH
Confidence 25799999998853
No 131
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=1e-09 Score=83.00 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL 135 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~ 135 (189)
+++.+|+|+|||+|.++..+++.. .+|+|+|++++|++.+.++++.. .++.++.+|+.+.. ....||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 358899999999999999999873 58999999999999887776543 47889999986521 1246999998
Q ss_pred CCC
Q psy13204 136 SPP 138 (189)
Q Consensus 136 npp 138 (189)
|.+
T Consensus 148 d~~ 150 (226)
T PRK04266 148 DVA 150 (226)
T ss_pred CCC
Confidence 755
No 132
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.08 E-value=5.1e-10 Score=81.58 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=57.3
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
-.+++|+|||.|.++..++.++.+++++|+++.+++.|+++.... .+++++++|+.+..+..+||+|++--....
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 468999999999999999999999999999999999999887533 489999999998888899999998544433
No 133
>PRK06922 hypothetical protein; Provisional
Probab=99.08 E-value=1e-09 Score=93.10 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSP 137 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~np 137 (189)
++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|+++....+. ++.++++|+.+.. ++.+||+|++++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEch
Confidence 3889999999999999888875 67999999999999999988765554 7888999987753 456899999998
Q ss_pred CCCC
Q psy13204 138 PWGG 141 (189)
Q Consensus 138 p~~~ 141 (189)
+++.
T Consensus 496 vLH~ 499 (677)
T PRK06922 496 ILHE 499 (677)
T ss_pred HHHh
Confidence 8874
No 134
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.08 E-value=6.2e-10 Score=87.84 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CC
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PS 127 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~ 127 (189)
..+.++..++++.+|||+|||+|..+..++++ +.+++++|+|++|++.+.+++.......++.++++|..+.. ..
T Consensus 53 ~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 53 HADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred HHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 44455666666789999999999999999887 57899999999999999998765432126788999987643 11
Q ss_pred C----CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204 128 L----QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 128 ~----~~D~v~~npp~~~~~~~~---~~~~~~~~l~~ 157 (189)
. ...+++++-+++.....+ ....+.+.|++
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p 169 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP 169 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence 1 234566666666544333 23445556644
No 135
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.08 E-value=8.7e-10 Score=82.07 Aligned_cols=86 Identities=23% Similarity=0.312 Sum_probs=71.1
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---- 125 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---- 125 (189)
+...++...+ .++||++|+++|..++++++. +++++.+|.+++..+.|++++...|+.++++++.+|+.+.+
T Consensus 36 lL~~l~~~~~-~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 36 LLQMLVRLTR-PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHT--SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHhcC-CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 3444444444 889999999999999999986 67999999999999999999999999778999999998764
Q ss_pred -C--CCCccEEEECCCC
Q psy13204 126 -P--SLQGDVVFLSPPW 139 (189)
Q Consensus 126 -~--~~~~D~v~~npp~ 139 (189)
. ..+||.||+|..-
T Consensus 115 ~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HTTTTTSEEEEEEESTG
T ss_pred hccCCCceeEEEEcccc
Confidence 1 2479999998754
No 136
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=2.5e-09 Score=84.82 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=67.3
Q ss_pred HHHHHHHh--CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204 53 VAQHIASR--CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P 126 (189)
Q Consensus 53 ~~~~~~~~--~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~ 126 (189)
+...+.+. ++++.+|||+|||+|.++..+++.. .+|+++|+++++++.|++++...+. .++.++++|..+.. .
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc
Confidence 34444443 3457899999999999999998863 3699999999999999999998888 57999999987654 3
Q ss_pred CCCccEEEEC
Q psy13204 127 SLQGDVVFLS 136 (189)
Q Consensus 127 ~~~~D~v~~n 136 (189)
...||+|+++
T Consensus 147 ~~~fD~Ii~~ 156 (322)
T PRK13943 147 FAPYDVIFVT 156 (322)
T ss_pred cCCccEEEEC
Confidence 3579999996
No 137
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.07 E-value=7.7e-10 Score=93.58 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHhCC---------CCCEEEEecCCCChHHHHHHHhC----------CeEEEEeCCHHHHHHHHHHHHHhC
Q psy13204 49 TPEKVAQHIASRCK---------ASDVVIDGFCGCGGNTIQFAAVC----------QKVISIDIDPAKLRLAQHNASVYG 109 (189)
Q Consensus 49 ~~~~~~~~~~~~~~---------~~~~vlD~g~G~G~~~~~~~~~~----------~~v~~vD~~~~~~~~a~~~~~~~~ 109 (189)
||..+++.|++.+. ...+|+|+|||+|.+.+.++... ..++|+|+++.++..++.++...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 56667777776542 23589999999999999997642 368999999999999999987665
Q ss_pred CCCceEEEeCCcccCC------CCCCccEEEECCCCCCCc
Q psy13204 110 VSHKIQFIQGDFFALA------PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 110 ~~~~~~~~~~d~~~~~------~~~~~D~v~~npp~~~~~ 143 (189)
. ..+.+.+.|..... ....||+|++||||....
T Consensus 88 ~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 88 L-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred C-CCceeeecccccccccccccccCcccEEEeCCCccccC
Confidence 2 24566666654321 124799999999999754
No 138
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.07 E-value=9.2e-10 Score=83.62 Aligned_cols=78 Identities=28% Similarity=0.423 Sum_probs=65.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP 138 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp 138 (189)
++.+|+|+|||+|.++..+++.+ .+++++|+++.+++.++++....+...+++++.+|+.+.. +...||+|+++--
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 36799999999999999998875 7899999999999999999876655457899999998765 4467999998544
Q ss_pred CC
Q psy13204 139 WG 140 (189)
Q Consensus 139 ~~ 140 (189)
.+
T Consensus 131 l~ 132 (239)
T PRK00216 131 LR 132 (239)
T ss_pred cc
Confidence 43
No 139
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.06 E-value=1.7e-09 Score=81.41 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEeCCcccCCCC--C
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-----------GVSHKIQFIQGDFFALAPS--L 128 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~--~ 128 (189)
+++.+|||+|||.|..+++++++|.+|+|+|+|+.+++.+....... -...++++.++|+.+..+. .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 44789999999999999999999999999999999999864321110 0124689999999988532 4
Q ss_pred CccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204 129 QGDVVFLSPPWGGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 129 ~~D~v~~npp~~~~~~~~---~~~~~~~~l~~ 157 (189)
.||.|+--.-++...... ....+.+++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 688887433333332221 22345666654
No 140
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=99.06 E-value=6.4e-09 Score=87.05 Aligned_cols=138 Identities=22% Similarity=0.333 Sum_probs=97.7
Q ss_pred cChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHh-C-----CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC
Q psy13204 48 VTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV-C-----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119 (189)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~-~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (189)
.||..+.++++..+.+ ..+|+|+.||+|++...+.+. + ...+|.|+++..+..|+.|+-.+|+...+....+
T Consensus 169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 3777889999998874 679999999999999888765 1 4579999999999999999999998434677888
Q ss_pred CcccCC-C-----CCCccEEEECCCCCCCcccccc----c----cccccCcCCCCc-hhHHHHh-hhcCC--ceEEEcCC
Q psy13204 120 DFFALA-P-----SLQGDVVFLSPPWGGPEYARSS----F----SIDNIFPEQGGG-RRLFQVA-RGISP--NVGYYLPR 181 (189)
Q Consensus 120 d~~~~~-~-----~~~~D~v~~npp~~~~~~~~~~----~----~~~~~l~~~~~g-~~~~~~~-~~~~~--~~~~~lp~ 181 (189)
|....+ . ...||.|++||||...++.... . ......+...+. +.++++. ....| ...+++|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 776655 1 1469999999999855544411 0 111122222234 5444444 45554 57888888
Q ss_pred CCCc
Q psy13204 182 TSDV 185 (189)
Q Consensus 182 ~~~~ 185 (189)
+.-+
T Consensus 329 gvlf 332 (489)
T COG0286 329 GVLF 332 (489)
T ss_pred CcCc
Confidence 7654
No 141
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.05 E-value=7.1e-10 Score=88.35 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=74.4
Q ss_pred HHHHHHHHHhC---CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204 51 EKVAQHIASRC---KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125 (189)
Q Consensus 51 ~~~~~~~~~~~---~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 125 (189)
+.+...+.+.. .++.+|||+|||+|.++..+++. +.+++++|+++++++.|+++... .+++++.+|+.+..
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC
Confidence 33444444433 23679999999999999988775 56899999999999999987642 36788999998765
Q ss_pred -CCCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204 126 -PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 126 -~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~ 157 (189)
+...||+|+++...+...... ....+.+.|++
T Consensus 174 ~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkP 207 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKI 207 (340)
T ss_pred CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCC
Confidence 556899999987776533222 23345566644
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.05 E-value=1.2e-09 Score=80.94 Aligned_cols=82 Identities=22% Similarity=0.181 Sum_probs=63.7
Q ss_pred HHHHhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCcc
Q psy13204 56 HIASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGD 131 (189)
Q Consensus 56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D 131 (189)
.+.+.++++.+|+|+|||+|.++..+++. +..++|+|+++++++.++.+ +++++++|+.+. .+..+||
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcC
Confidence 34455667889999999999999988765 56789999999999887532 457788887652 2456899
Q ss_pred EEEECCCCCCCccc
Q psy13204 132 VVFLSPPWGGPEYA 145 (189)
Q Consensus 132 ~v~~npp~~~~~~~ 145 (189)
+|+++.++++....
T Consensus 78 ~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 78 YVILSQTLQATRNP 91 (194)
T ss_pred EEEEhhHhHcCcCH
Confidence 99999988876443
No 143
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.05 E-value=4.4e-10 Score=93.98 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=69.7
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC--C-CCCCccEEEECCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL--A-PSLQGDVVFLSPPWG 140 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~D~v~~npp~~ 140 (189)
+.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++.. .+...+++++++|+.+. . +..+||+|+++.+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 67999999999999999999988999999999999876542 22224789999998642 2 556899999999988
Q ss_pred CCcccc---ccccccccCcC
Q psy13204 141 GPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 141 ~~~~~~---~~~~~~~~l~~ 157 (189)
...... ....+.+++++
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~ 134 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKV 134 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCC
Confidence 765422 23345556644
No 144
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.1e-09 Score=81.13 Aligned_cols=81 Identities=22% Similarity=0.234 Sum_probs=71.8
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 137 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np 137 (189)
+.+|.+|+|.|.|+|.++.++++. -++|+.+|+.++..+.|++|+...++.+++++..+|+.+......||+|+.|.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm 171 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL 171 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence 455999999999999999999986 36899999999999999999999999666999999999887556999999998
Q ss_pred CCCC
Q psy13204 138 PWGG 141 (189)
Q Consensus 138 p~~~ 141 (189)
|--+
T Consensus 172 p~PW 175 (256)
T COG2519 172 PDPW 175 (256)
T ss_pred CChH
Confidence 7654
No 145
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.03 E-value=3.7e-09 Score=78.94 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=66.4
Q ss_pred HHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-C
Q psy13204 53 VAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-P 126 (189)
Q Consensus 53 ~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~ 126 (189)
+...+.+.+ +++.+|||+|||+|..+..++.. + ..|+++|.++...+.|++++...+. .++.++++|...-. .
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhcccc
Confidence 344444443 55999999999999999999987 3 3689999999999999999999998 58999999987755 4
Q ss_pred CCCccEEEECCCC
Q psy13204 127 SLQGDVVFLSPPW 139 (189)
Q Consensus 127 ~~~~D~v~~npp~ 139 (189)
...||.|+++...
T Consensus 139 ~apfD~I~v~~a~ 151 (209)
T PF01135_consen 139 EAPFDRIIVTAAV 151 (209)
T ss_dssp G-SEEEEEESSBB
T ss_pred CCCcCEEEEeecc
Confidence 4579999996544
No 146
>PLN03075 nicotianamine synthase; Provisional
Probab=99.02 E-value=1.2e-09 Score=85.15 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCEEEEecCCCChHHHH-HH-Hh--CCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204 63 ASDVVIDGFCGCGGNTIQ-FA-AV--CQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-PSLQGDVVFLS 136 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~-~~-~~--~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n 136 (189)
.+++|+|+|||.|.++.. ++ +. +.+++|+|+++++++.|++++.. .++.++++|..+|+.+.. ....||+|+++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 478999999998855333 33 33 56799999999999999999964 788778999999998865 34689999998
Q ss_pred CCCCCCcccc---ccccccccCcCCCCchhHHH
Q psy13204 137 PPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQ 166 (189)
Q Consensus 137 pp~~~~~~~~---~~~~~~~~l~~~~~g~~~~~ 166 (189)
-.+..+... ....+.+.+++ ||..++.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkP--GG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAP--GALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCC--CcEEEEe
Confidence 444332122 23345555544 3554443
No 147
>KOG1271|consensus
Probab=99.02 E-value=2e-09 Score=77.18 Aligned_cols=93 Identities=28% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCcccccCh-HHHHHHHHHhCC-----C-CCEEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy13204 42 TESWYSVTP-EKVAQHIASRCK-----A-SDVVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSH 112 (189)
Q Consensus 42 ~~~~~~~~~-~~~~~~~~~~~~-----~-~~~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~ 112 (189)
-+-||.... +.+..++...+. + ..+|||+|||.|.+...+++.+. ..+|+|.|+++++.|+..++..+.++
T Consensus 39 GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n 118 (227)
T KOG1271|consen 39 GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN 118 (227)
T ss_pred cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence 345666544 345566655443 2 44999999999999999999865 37999999999999999999999976
Q ss_pred ceEEEeCCcccCC-CCCCccEEE
Q psy13204 113 KIQFIQGDFFALA-PSLQGDVVF 134 (189)
Q Consensus 113 ~~~~~~~d~~~~~-~~~~~D~v~ 134 (189)
.|++.+.|+.+.. ...+||+|+
T Consensus 119 ~I~f~q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 119 EIRFQQLDITDPDFLSGQFDLVL 141 (227)
T ss_pred ceeEEEeeccCCcccccceeEEe
Confidence 6999999998843 344566654
No 148
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.02 E-value=7.6e-10 Score=84.02 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWG 140 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~ 140 (189)
+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++.+.. .++.++.+|+.+.. +..+||+|+++-.++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5689999999999999998875 467999999999999887654 36788999988776 567899999988777
Q ss_pred CCcccc-ccccccccCcC
Q psy13204 141 GPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 141 ~~~~~~-~~~~~~~~l~~ 157 (189)
...... ....+.+++++
T Consensus 110 ~~~~~~~~l~~~~~~L~~ 127 (240)
T TIGR02072 110 WCDDLSQALSELARVLKP 127 (240)
T ss_pred hccCHHHHHHHHHHHcCC
Confidence 653332 22344555543
No 149
>PRK08317 hypothetical protein; Provisional
Probab=99.01 E-value=1.8e-09 Score=81.94 Aligned_cols=94 Identities=26% Similarity=0.297 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSP 137 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~np 137 (189)
.++.+|||+|||+|.++..+++. ..+++|+|+++.+++.++++.... ..++++..+|+.+.. +...||+|+++-
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence 44789999999999999999876 368999999999999998883322 247899999987654 556899999987
Q ss_pred CCCCCcccc-ccccccccCcC
Q psy13204 138 PWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 138 p~~~~~~~~-~~~~~~~~l~~ 157 (189)
.++...... ....+.+++++
T Consensus 96 ~~~~~~~~~~~l~~~~~~L~~ 116 (241)
T PRK08317 96 VLQHLEDPARALAEIARVLRP 116 (241)
T ss_pred hhhccCCHHHHHHHHHHHhcC
Confidence 766543222 22344555543
No 150
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.00 E-value=1.1e-09 Score=84.73 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=77.9
Q ss_pred CCEEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE-CCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL-SPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~-npp~~~ 141 (189)
|++|+|+|||+|.++..|+.+|++ |+|+|.++..+-+.+.-....|....+..+..-+.+......||+|++ .-=||.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLYHr 195 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLYHR 195 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehhcc
Confidence 999999999999999999999775 899999988776654433444432233333334444445568999887 555777
Q ss_pred CccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCC
Q psy13204 142 PEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPR 181 (189)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~ 181 (189)
.+....+..+.+.+.. ||..+++..--..++.....|.
T Consensus 196 r~Pl~~L~~Lk~~L~~--gGeLvLETlvi~g~~~~~L~P~ 233 (315)
T PF08003_consen 196 RSPLDHLKQLKDSLRP--GGELVLETLVIDGDENTVLVPE 233 (315)
T ss_pred CCHHHHHHHHHHhhCC--CCEEEEEEeeecCCCceEEccC
Confidence 6666666677777754 5776666654444444444443
No 151
>KOG1540|consensus
Probab=99.00 E-value=4.5e-09 Score=79.14 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=76.8
Q ss_pred HHHHhCCC--CCEEEEecCCCChHHHHHHHh--------CCeEEEEeCCHHHHHHHHHHHHHhCCCCc--eEEEeCCccc
Q psy13204 56 HIASRCKA--SDVVIDGFCGCGGNTIQFAAV--------CQKVISIDIDPAKLRLAQHNASVYGVSHK--IQFIQGDFFA 123 (189)
Q Consensus 56 ~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~ 123 (189)
.....+.+ +..+||++||+|..++.+.+. ..+|+..|+||+|+..+++++...++..+ +.|+++|+++
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 33444444 789999999999999999876 26899999999999999999977777544 8999999999
Q ss_pred CC-CCCCccEEEECCCCCCCcccc---ccccccccCcC
Q psy13204 124 LA-PSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPE 157 (189)
Q Consensus 124 ~~-~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~ 157 (189)
.+ +++++|...+ -|+.....+ -..+.-++|++
T Consensus 171 LpFdd~s~D~yTi--afGIRN~th~~k~l~EAYRVLKp 206 (296)
T KOG1540|consen 171 LPFDDDSFDAYTI--AFGIRNVTHIQKALREAYRVLKP 206 (296)
T ss_pred CCCCCCcceeEEE--ecceecCCCHHHHHHHHHHhcCC
Confidence 98 8889999888 565555444 22234445544
No 152
>PRK06202 hypothetical protein; Provisional
Probab=98.99 E-value=2.2e-09 Score=81.62 Aligned_cols=78 Identities=26% Similarity=0.207 Sum_probs=59.0
Q ss_pred CCCEEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 135 (189)
.+.+|+|+|||+|.++..+++. + .+++|+|+++++++.|+++....+ +.+.+.+..... ++.+||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEEEE
Confidence 4779999999999999888753 3 489999999999999988765333 445555443332 4568999999
Q ss_pred CCCCCCCcc
Q psy13204 136 SPPWGGPEY 144 (189)
Q Consensus 136 npp~~~~~~ 144 (189)
+-.+++...
T Consensus 136 ~~~lhh~~d 144 (232)
T PRK06202 136 NHFLHHLDD 144 (232)
T ss_pred CCeeecCCh
Confidence 988877654
No 153
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.99 E-value=1.6e-09 Score=82.35 Aligned_cols=77 Identities=27% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~ 141 (189)
+..|||+|||+|.++..+++.+.+++++|+++.+++.++++....+. .+++...|..+.. ....||+|++.-.+..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 77999999999999999998889999999999999999998877665 6788888887764 4468999999766655
Q ss_pred C
Q psy13204 142 P 142 (189)
Q Consensus 142 ~ 142 (189)
.
T Consensus 127 ~ 127 (233)
T PRK05134 127 V 127 (233)
T ss_pred c
Confidence 4
No 154
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.99 E-value=4.6e-09 Score=84.87 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=65.3
Q ss_pred CEEEEecCCCChHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAV--C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPW 139 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~ 139 (189)
.+|||++||+|..++.++.. | .+|+++|+|+.+++.+++|++.+++ .++.++++|+...+. ...||+|++|| |
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 48999999999999999986 3 5799999999999999999999988 478999999988763 35799999999 5
Q ss_pred C
Q psy13204 140 G 140 (189)
Q Consensus 140 ~ 140 (189)
+
T Consensus 124 G 124 (374)
T TIGR00308 124 G 124 (374)
T ss_pred C
Confidence 4
No 155
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.99 E-value=2.6e-11 Score=79.99 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=52.9
Q ss_pred EEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC---CcccCCCCCCccEEEECCCCCCC
Q psy13204 68 IDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG---DFFALAPSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 68 lD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~D~v~~npp~~~~ 142 (189)
||+|||+|.++..+.+. ..+++|+|+|+.+++.++++....+. ........ +..+.....+||+|++.-.+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 69999999999999888 78899999999999988888877664 23333443 33333333599999998777776
Q ss_pred cccc-ccccccccCcC
Q psy13204 143 EYAR-SSFSIDNIFPE 157 (189)
Q Consensus 143 ~~~~-~~~~~~~~l~~ 157 (189)
.... ....+.+++++
T Consensus 80 ~~~~~~l~~~~~~L~p 95 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKP 95 (99)
T ss_dssp S-HHHHHHHHTTT-TS
T ss_pred hhHHHHHHHHHHHcCC
Confidence 3222 22234455533
No 156
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.98 E-value=1.4e-09 Score=82.05 Aligned_cols=93 Identities=19% Similarity=0.109 Sum_probs=71.4
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCCccEEEECCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQGDVVFLSPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~npp~~~ 141 (189)
+.+|+|+|||+|.++..+++.+.+++++|+++.+++.++.++...+. .++++.++|+.+... ...||+|+++-.++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 77999999999999999988888999999999999999999887765 268889999887652 268999999766554
Q ss_pred Ccccc-ccccccccCcC
Q psy13204 142 PEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 142 ~~~~~-~~~~~~~~l~~ 157 (189)
..... ....+.+.+..
T Consensus 125 ~~~~~~~l~~~~~~L~~ 141 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKP 141 (224)
T ss_pred CCCHHHHHHHHHHhcCC
Confidence 33222 22334445533
No 157
>KOG2671|consensus
Probab=98.98 E-value=6.5e-10 Score=86.75 Aligned_cols=87 Identities=32% Similarity=0.439 Sum_probs=71.2
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHH-------HHHHHHHHhCCCC-ceEEEeCCcccCC--CCCC
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR-------LAQHNASVYGVSH-KIQFIQGDFFALA--PSLQ 129 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~-~~~~~~~d~~~~~--~~~~ 129 (189)
..++|+.|+|++.|+|++.+.++.-|+.|+|-||+-.++. -.+.|++..|..+ -..++.+|..... ....
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 3456999999999999999999999999999999988876 2467888888643 3678888887765 4558
Q ss_pred ccEEEECCCCCCCcccc
Q psy13204 130 GDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 130 ~D~v~~npp~~~~~~~~ 146 (189)
||+|++||||+.....+
T Consensus 285 fDaIvcDPPYGVRe~~r 301 (421)
T KOG2671|consen 285 FDAIVCDPPYGVREGAR 301 (421)
T ss_pred eeEEEeCCCcchhhhhh
Confidence 99999999999765443
No 158
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.97 E-value=8.7e-09 Score=78.62 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEE
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVV 133 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v 133 (189)
+.+|.+|+|.|.|+|.++..+++. .++|+.+|..++..+.|++|++.+|+.+++++.+.|+.+.. ....+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 466999999999999999999987 46999999999999999999999999778999999986422 13579999
Q ss_pred EECCCCCC
Q psy13204 134 FLSPPWGG 141 (189)
Q Consensus 134 ~~npp~~~ 141 (189)
++|.|--+
T Consensus 118 fLDlp~Pw 125 (247)
T PF08704_consen 118 FLDLPDPW 125 (247)
T ss_dssp EEESSSGG
T ss_pred EEeCCCHH
Confidence 99988654
No 159
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.97 E-value=4.2e-10 Score=80.29 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=61.5
Q ss_pred HHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-CCCCCccE
Q psy13204 54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-APSLQGDV 132 (189)
Q Consensus 54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~ 132 (189)
...+......+.+|||+|||.|.++..+++.+.+++|+|+++.+++. . .......+.... .+...||+
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~fD~ 81 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPPFPDGSFDL 81 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---------T--TSEEEEEECHTHHCHSSSEEE
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhhccccchhh
Confidence 33333334558999999999999999999889999999999999988 1 223333322222 25679999
Q ss_pred EEECCCCCCCcccc-ccccccccC
Q psy13204 133 VFLSPPWGGPEYAR-SSFSIDNIF 155 (189)
Q Consensus 133 v~~npp~~~~~~~~-~~~~~~~~l 155 (189)
|+++-.+++..... ....+.+++
T Consensus 82 i~~~~~l~~~~d~~~~l~~l~~~L 105 (161)
T PF13489_consen 82 IICNDVLEHLPDPEEFLKELSRLL 105 (161)
T ss_dssp EEEESSGGGSSHHHHHHHHHHHCE
T ss_pred HhhHHHHhhcccHHHHHHHHHHhc
Confidence 99976666544322 223344444
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.97 E-value=6.6e-09 Score=85.82 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=65.5
Q ss_pred HHHHHHHhCCC------CCEEEEecCCCChHHHHHHHhC------CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204 53 VAQHIASRCKA------SDVVIDGFCGCGGNTIQFAAVC------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120 (189)
Q Consensus 53 ~~~~~~~~~~~------~~~vlD~g~G~G~~~~~~~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 120 (189)
+.+.+.+.... +..|+|+|||+|.++..+++++ .+|++||.|+.++..+++.+..++..+.|+++++|
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d 249 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGD 249 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 44445554443 4689999999999998887775 58999999999998888887888887789999999
Q ss_pred cccCCCCCCccEEEE
Q psy13204 121 FFALAPSLQGDVVFL 135 (189)
Q Consensus 121 ~~~~~~~~~~D~v~~ 135 (189)
+.++....++|+||+
T Consensus 250 ~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 250 MREVELPEKVDIIVS 264 (448)
T ss_dssp TTTSCHSS-EEEEEE
T ss_pred ccCCCCCCceeEEEE
Confidence 999986679999999
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.96 E-value=3.5e-10 Score=83.95 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC---CCCCccEEEEC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA---PSLQGDVVFLS 136 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---~~~~~D~v~~n 136 (189)
+.|.+|||.|.|-|..++++.++|+ +|+.+|.+|..++.|.-|-=-.++. ..+.++.+|+.+.. ++.+||+|+-|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 3499999999999999999999999 8999999999999988774222332 25799999998865 66789999999
Q ss_pred CCCCCCcccc----ccccccccCcC
Q psy13204 137 PPWGGPEYAR----SSFSIDNIFPE 157 (189)
Q Consensus 137 pp~~~~~~~~----~~~~~~~~l~~ 157 (189)
||..-....- ...++.++|+.
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkr 237 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKR 237 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCc
Confidence 9987543321 22345556644
No 162
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.95 E-value=1.2e-08 Score=84.71 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEEC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLS 136 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~n 136 (189)
+++.+|||+|||.|+-+..++.. ...++++|+++..++.+++|+.+.|+ .++.+.+.|..++. ....||.|+.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 45899999999999999999876 35799999999999999999999999 57899999987653 23479999999
Q ss_pred CCCCCCcccc
Q psy13204 137 PPWGGPEYAR 146 (189)
Q Consensus 137 pp~~~~~~~~ 146 (189)
+||.+.+...
T Consensus 191 aPCSG~G~~r 200 (470)
T PRK11933 191 APCSGEGTVR 200 (470)
T ss_pred CCCCCCcccc
Confidence 9999877655
No 163
>PRK00811 spermidine synthase; Provisional
Probab=98.95 E-value=7.1e-09 Score=81.12 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C--CCceEEEeCCcccCC--CCCCccEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V--SHKIQFIQGDFFALA--PSLQGDVV 133 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~--~~~~~D~v 133 (189)
+.+++||++|||.|..+.++.+. ..+|+++|+++.+++.|++.+...+ . ..+++++.+|+.++. ...+||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 44789999999999999999886 4589999999999999999876432 1 247899999998876 34689999
Q ss_pred EECC
Q psy13204 134 FLSP 137 (189)
Q Consensus 134 ~~np 137 (189)
++|.
T Consensus 155 i~D~ 158 (283)
T PRK00811 155 IVDS 158 (283)
T ss_pred EECC
Confidence 9984
No 164
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.94 E-value=5.9e-09 Score=67.98 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=62.3
Q ss_pred EEEEecCCCChHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCC
Q psy13204 66 VVIDGFCGCGGNTIQFAA-VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~ 141 (189)
+++|+|||.|.++..+++ ...+++++|+++.++..+++.....+. .++.++..|..+.. ....+|++++++|++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 479999999999999987 577899999999999998864443333 47899999998875 3567999999999986
No 165
>PRK04148 hypothetical protein; Provisional
Probab=98.94 E-value=1.6e-08 Score=69.85 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCC--CCEEEEecCCCCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--
Q psy13204 52 KVAQHIASRCKA--SDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-- 126 (189)
Q Consensus 52 ~~~~~~~~~~~~--~~~vlD~g~G~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 126 (189)
.+.+.+.+.+.. +.+++|+|||.|. .+..+++.|..|+++|+++.+++.++++ .++++++|.++...
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 355666665543 5789999999996 8889998899999999999998887665 35889999987652
Q ss_pred CCCccEEEE-CCCCC
Q psy13204 127 SLQGDVVFL-SPPWG 140 (189)
Q Consensus 127 ~~~~D~v~~-npp~~ 140 (189)
-..+|+|++ .||-.
T Consensus 75 y~~a~liysirpp~e 89 (134)
T PRK04148 75 YKNAKLIYSIRPPRD 89 (134)
T ss_pred HhcCCEEEEeCCCHH
Confidence 246888887 45544
No 166
>PRK04457 spermidine synthase; Provisional
Probab=98.94 E-value=2.9e-09 Score=82.41 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=63.2
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSP 137 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~np 137 (189)
.+.+|+|+|||+|.++..+++. +.+++++|+++++++.|++++...+..++++++++|+.++. ...+||+|++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4789999999999999999876 56899999999999999998765544358999999998765 235799999984
No 167
>KOG1500|consensus
Probab=98.92 E-value=7e-09 Score=81.00 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=66.7
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp 138 (189)
++.|+|+|||+|.++.+++++|+ +|+++|-+ +|.++|+.-++-+.++++|+++.+.+++..-.+++|++++.|.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence 88999999999999999999975 69999997 4899999999989998999999999999875578999999765
No 168
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.92 E-value=1e-08 Score=76.63 Aligned_cols=85 Identities=18% Similarity=0.279 Sum_probs=71.3
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe-CCcccCCC--
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ-GDFFALAP-- 126 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~-- 126 (189)
+...++... .++++|++|.+.|..+++++.. ..+++.+|++++..+.|++|++..|+.+++..+. +|+.+.+.
T Consensus 50 ~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 50 LLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 444444444 4889999999999999999986 4589999999999999999999999977789999 58888763
Q ss_pred -CCCccEEEECCC
Q psy13204 127 -SLQGDVVFLSPP 138 (189)
Q Consensus 127 -~~~~D~v~~npp 138 (189)
..+||+||+|.-
T Consensus 129 ~~~~fDliFIDad 141 (219)
T COG4122 129 LDGSFDLVFIDAD 141 (219)
T ss_pred cCCCccEEEEeCC
Confidence 478999999843
No 169
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=9.9e-09 Score=78.45 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--- 126 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--- 126 (189)
+...++...+ .++||++|+++|..++++++. +.+++++|.+++..+.|++++...|+.++++++.+|+.+.++
T Consensus 70 lL~~l~~~~~-ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 70 FLNMLLKLIN-AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHhC-CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 3444444444 789999999999999999875 568999999999999999999999998899999999988652
Q ss_pred -----CCCccEEEECCC
Q psy13204 127 -----SLQGDVVFLSPP 138 (189)
Q Consensus 127 -----~~~~D~v~~npp 138 (189)
..+||+||+|.-
T Consensus 149 ~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD 165 (247)
T ss_pred hccccCCcccEEEecCC
Confidence 258999999855
No 170
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.88 E-value=1.1e-08 Score=80.85 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=72.6
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
++.+|+|+|||+|.+++.++++ ..+++++|. +.+++.+++++...++.++++++.+|+.+... ..+|+|++.-..+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~~D~v~~~~~lh 226 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PEADAVLFCRILY 226 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CCCCEEEeEhhhh
Confidence 3679999999999999999988 468999998 78999999999999987789999999986432 2369887644333
Q ss_pred CCcccc---ccccccccCcCCCCchhHHHH
Q psy13204 141 GPEYAR---SSFSIDNIFPEQGGGRRLFQV 167 (189)
Q Consensus 141 ~~~~~~---~~~~~~~~l~~~~~g~~~~~~ 167 (189)
...... ....+.+.+++ +|.+.+.+.
T Consensus 227 ~~~~~~~~~il~~~~~~L~p-gG~l~i~d~ 255 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRS-GGRLLILDM 255 (306)
T ss_pred cCChHHHHHHHHHHHHhcCC-CCEEEEEEe
Confidence 222211 23345556643 133344443
No 171
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.88 E-value=1.1e-08 Score=76.86 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=62.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPP 138 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp 138 (189)
++.+|+|+|||+|..+..+++... +++++|+++.+++.++++.. ...+++++.+|+.+.. +...||+|+++-.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 478999999999999999988743 89999999999999988875 2247899999998865 4467999998655
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
.+.
T Consensus 116 ~~~ 118 (223)
T TIGR01934 116 LRN 118 (223)
T ss_pred eCC
Confidence 443
No 172
>KOG1499|consensus
Probab=98.87 E-value=9.5e-09 Score=80.74 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=64.1
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 135 (189)
++.|+|+|||+|-+++++|++|+ +|+|+|.+.-+ +.|++.+..+++.+.++++.+.+.+.. |..++|+|++
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence 89999999999999999999976 59999998754 999999999999777999999998875 6678999998
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=2.5e-08 Score=75.17 Aligned_cols=98 Identities=18% Similarity=0.298 Sum_probs=68.8
Q ss_pred cccccChH-HHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH------------HhC
Q psy13204 44 SWYSVTPE-KVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS------------VYG 109 (189)
Q Consensus 44 ~~~~~~~~-~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~------------~~~ 109 (189)
+|.+..+. .+.+...... .++.+|+++|||.|....+++.+|.+|+|+|+|+.+++.+.+... ...
T Consensus 22 ~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 22 GFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 55454443 2334443332 336899999999999999999999999999999999999755321 011
Q ss_pred CCCceEEEeCCcccCCC----CCCccEEEECCCCCCC
Q psy13204 110 VSHKIQFIQGDFFALAP----SLQGDVVFLSPPWGGP 142 (189)
Q Consensus 110 ~~~~~~~~~~d~~~~~~----~~~~D~v~~npp~~~~ 142 (189)
..++++.++|++++.+ ...||+|+----+...
T Consensus 102 -~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al 137 (226)
T PRK13256 102 -GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL 137 (226)
T ss_pred -cCceEEEEccCcCCCccccccCCcCeeeeehhHhcC
Confidence 1378999999999853 2468987654444443
No 174
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.85 E-value=2.2e-08 Score=78.08 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=49.2
Q ss_pred CCEEEEecCCCChH-HHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcc----cCC--CCCCccEEE
Q psy13204 64 SDVVIDGFCGCGGN-TIQFAA-VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFF----ALA--PSLQGDVVF 134 (189)
Q Consensus 64 ~~~vlD~g~G~G~~-~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~----~~~--~~~~~D~v~ 134 (189)
..++||+|+|...+ .+-.++ .+++.+|.|+++.+++.|++|+..+ ++..+|+++..... +.. +...||..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 34789999998764 343333 4999999999999999999999999 89888988866422 212 345899999
Q ss_pred ECCCCCCCc
Q psy13204 135 LSPPWGGPE 143 (189)
Q Consensus 135 ~npp~~~~~ 143 (189)
|||||....
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 999999754
No 175
>PTZ00146 fibrillarin; Provisional
Probab=98.85 E-value=3.2e-08 Score=76.98 Aligned_cols=90 Identities=17% Similarity=0.055 Sum_probs=65.0
Q ss_pred cccChHHHHHHHHHh-----CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204 46 YSVTPEKVAQHIASR-----CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117 (189)
Q Consensus 46 ~~~~~~~~~~~~~~~-----~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (189)
|.+.+..+++.+..- ++++.+|||+|||+|.++..++... .+|+++|+++.+.+.....+... .++.++
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I 186 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPI 186 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEE
Confidence 444555666665332 3458899999999999999999873 57999999998765554443322 378899
Q ss_pred eCCcccCC----CCCCccEEEECCC
Q psy13204 118 QGDFFALA----PSLQGDVVFLSPP 138 (189)
Q Consensus 118 ~~d~~~~~----~~~~~D~v~~npp 138 (189)
.+|+.... ....+|+|++|-.
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeCC
Confidence 99986431 2347999999874
No 176
>PRK03612 spermidine synthase; Provisional
Probab=98.84 E-value=1.2e-08 Score=86.11 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHh-----CCC-CceEEEeCCcccCC--CCCCcc
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVY-----GVS-HKIQFIQGDFFALA--PSLQGD 131 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----~~~-~~~~~~~~d~~~~~--~~~~~D 131 (189)
+++++|+|+|||+|..+.++.+.. .+++++|+|+++++.++++.... ... ++++++.+|..++. ...+||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 457899999999999999998873 68999999999999999853211 121 37899999998865 346899
Q ss_pred EEEECCCCCC
Q psy13204 132 VVFLSPPWGG 141 (189)
Q Consensus 132 ~v~~npp~~~ 141 (189)
+|++|+|...
T Consensus 376 vIi~D~~~~~ 385 (521)
T PRK03612 376 VIIVDLPDPS 385 (521)
T ss_pred EEEEeCCCCC
Confidence 9999988653
No 177
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.84 E-value=5.6e-09 Score=80.91 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=70.9
Q ss_pred CCEEEEecCCCCh----HHHHHHHh-------CCeEEEEeCCHHHHHHHHHHHH----HhC-------------------
Q psy13204 64 SDVVIDGFCGCGG----NTIQFAAV-------CQKVISIDIDPAKLRLAQHNAS----VYG------------------- 109 (189)
Q Consensus 64 ~~~vlD~g~G~G~----~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~----~~~------------------- 109 (189)
+.+|+|+|||+|. +++.+++. +.+|+|+|+|+.+++.|++... ..+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 5699999999996 45555543 3579999999999999987531 111
Q ss_pred ---CCCceEEEeCCcccCC-CCCCccEEEECCCCCCCcccc---ccccccccCcCCCCchhHHHHhhhc
Q psy13204 110 ---VSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGI 171 (189)
Q Consensus 110 ---~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~ 171 (189)
+..++++.++|+.+.. +...||+|++.-.++..+... ....+.+.|++ ||+.++.....+
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p--GG~L~lg~~E~~ 246 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP--GGYLFLGHSESL 246 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC--CeEEEEECcccC
Confidence 1136899999998875 467899999955554433222 23345566655 577665554443
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.1e-08 Score=78.13 Aligned_cols=83 Identities=27% Similarity=0.439 Sum_probs=70.7
Q ss_pred CCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CC-CCccEEE
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PS-LQGDVVF 134 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~-~~~D~v~ 134 (189)
+|.+|+|++++.|+=+..+++. +..|+++|.++.-++..++|+.+.|+ .++.+++.|..... .. ..||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecccccccccccccCcCcEEE
Confidence 3899999999999999999886 34579999999999999999999999 46888888876554 22 2599999
Q ss_pred ECCCCCCCcccc
Q psy13204 135 LSPPWGGPEYAR 146 (189)
Q Consensus 135 ~npp~~~~~~~~ 146 (189)
.|+||.+.+...
T Consensus 235 lDaPCSg~G~ir 246 (355)
T COG0144 235 LDAPCSGTGVIR 246 (355)
T ss_pred ECCCCCCCcccc
Confidence 999999988665
No 179
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.83 E-value=4.6e-09 Score=75.66 Aligned_cols=70 Identities=30% Similarity=0.336 Sum_probs=62.4
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 135 (189)
.+.+.|+|+|+|.++..++....+|+++|.+|....+|.+|+...|. .++.++++|+.+..- ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHH
Confidence 47899999999999999999989999999999999999999988888 699999999988742 45677776
No 180
>PRK01581 speE spermidine synthase; Validated
Probab=98.82 E-value=2.5e-08 Score=79.64 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=64.0
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHH--H---HhCC-CCceEEEeCCcccCC--CCC
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNA--S---VYGV-SHKIQFIQGDFFALA--PSL 128 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~--~---~~~~-~~~~~~~~~d~~~~~--~~~ 128 (189)
.....+.+||++|||.|..+.++.+.. .+++++|+++++++.|++.. . ...+ ..+++++.+|+.++. ...
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 334558899999999999988888763 68999999999999999621 1 1111 248999999999876 345
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.||+|++|.|-.
T Consensus 226 ~YDVIIvDl~DP 237 (374)
T PRK01581 226 LYDVIIIDFPDP 237 (374)
T ss_pred CccEEEEcCCCc
Confidence 799999998653
No 181
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.81 E-value=2e-08 Score=75.21 Aligned_cols=65 Identities=26% Similarity=0.245 Sum_probs=52.4
Q ss_pred CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---------CCCC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL 128 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~ 128 (189)
++++..|||+|||+|.++..+++.. .+|+|+|+++ + ... .+++++++|+.+. ....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 4668899999999999999998872 5899999998 1 122 3689999998874 2456
Q ss_pred CccEEEECC
Q psy13204 129 QGDVVFLSP 137 (189)
Q Consensus 129 ~~D~v~~np 137 (189)
.+|+|++|+
T Consensus 117 ~~D~V~S~~ 125 (209)
T PRK11188 117 KVQVVMSDM 125 (209)
T ss_pred CCCEEecCC
Confidence 899999986
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.81 E-value=2.9e-08 Score=76.92 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-
Q psy13204 51 EKVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS- 127 (189)
Q Consensus 51 ~~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~- 127 (189)
..+.+.+++.+. ++..|+|+|+|.|.++..+.+.+.+++++|+++.+++..++... ...+++++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 346666666655 38899999999999999999999999999999999999887655 225899999999998632
Q ss_pred ---CCccEEEECCCCCC
Q psy13204 128 ---LQGDVVFLSPPWGG 141 (189)
Q Consensus 128 ---~~~D~v~~npp~~~ 141 (189)
.....|++|.||..
T Consensus 93 ~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp HCSSSEEEEEEEETGTG
T ss_pred hhcCCceEEEEEecccc
Confidence 35679999999954
No 183
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.80 E-value=2.3e-08 Score=78.23 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=63.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCC--CccEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSL--QGDVV 133 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~--~~D~v 133 (189)
.++..++|.+||.|+.+..+++.. .+|+|+|.++.+++.|++++.. .+++.++++|..++. +.. .+|.|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 347799999999999999999873 6899999999999999988754 258999999998765 222 79999
Q ss_pred EECCCCCC
Q psy13204 134 FLSPPWGG 141 (189)
Q Consensus 134 ~~npp~~~ 141 (189)
++|.=..-
T Consensus 95 l~DLGvSs 102 (296)
T PRK00050 95 LLDLGVSS 102 (296)
T ss_pred EECCCccc
Confidence 99865544
No 184
>PLN02366 spermidine synthase
Probab=98.80 E-value=5.9e-08 Score=76.60 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=64.5
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--CC-CCceEEEeCCcccCC---CCCCccE
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GV-SHKIQFIQGDFFALA---PSLQGDV 132 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~---~~~~~D~ 132 (189)
.+.+++||++|||.|..+.++++. ..+|+.+|+++.+++.|++.+... ++ ..+++++.+|+.++. +..+||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 345889999999999999999887 358999999999999999987643 22 237999999987765 2458999
Q ss_pred EEECCCC
Q psy13204 133 VFLSPPW 139 (189)
Q Consensus 133 v~~npp~ 139 (189)
|++|.+-
T Consensus 169 Ii~D~~d 175 (308)
T PLN02366 169 IIVDSSD 175 (308)
T ss_pred EEEcCCC
Confidence 9998654
No 185
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.80 E-value=4.4e-08 Score=72.52 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=61.9
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSP 137 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~np 137 (189)
...+||+|||.|.+.+.+|+. ...++|+|+....+..+..++...++ .|+.++++|+...+ +..++|.|+++=
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 348899999999999999987 67899999999999999999999998 69999999998854 567899988875
Q ss_pred CCCC
Q psy13204 138 PWGG 141 (189)
Q Consensus 138 p~~~ 141 (189)
|--+
T Consensus 97 PDPW 100 (195)
T PF02390_consen 97 PDPW 100 (195)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 186
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.79 E-value=2.4e-08 Score=75.13 Aligned_cols=100 Identities=22% Similarity=0.368 Sum_probs=66.5
Q ss_pred cccccChH-HHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH-h------C----C
Q psy13204 44 SWYSVTPE-KVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASV-Y------G----V 110 (189)
Q Consensus 44 ~~~~~~~~-~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~------~----~ 110 (189)
.|.+..+. .+.+.+.. ..+.+.+||.+|||.|.....++++|.+|+|+|+|+.+++.+.+.... . + -
T Consensus 16 ~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 16 PWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 44443332 24444433 134467999999999999999999999999999999999998433221 0 0 0
Q ss_pred CCceEEEeCCcccCCCCC--CccEEEECCCCCCCc
Q psy13204 111 SHKIQFIQGDFFALAPSL--QGDVVFLSPPWGGPE 143 (189)
Q Consensus 111 ~~~~~~~~~d~~~~~~~~--~~D~v~~npp~~~~~ 143 (189)
..++++.++|+++..+.. +||+|+=---+..+.
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alp 130 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALP 130 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCC
Confidence 136799999999976433 699988654555443
No 187
>KOG1541|consensus
Probab=98.76 E-value=4e-08 Score=72.62 Aligned_cols=66 Identities=23% Similarity=0.190 Sum_probs=54.4
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~ 135 (189)
+..+||+|||+|..+..+...|...+|+|+|+.|++.|.+.-- .-.++.+|.-+-. +..+||.+|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~------egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL------EGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh------hcCeeeeecCCCCCCCCCccceEEE
Confidence 6789999999999999999999999999999999999987322 2367777776544 5678998776
No 188
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=98.73 E-value=5.3e-08 Score=73.34 Aligned_cols=79 Identities=25% Similarity=0.377 Sum_probs=48.2
Q ss_pred CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHH---HHHHhCC-----CCceEEEeCCcccCC--CCCCccEEE
Q psy13204 65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH---NASVYGV-----SHKIQFIQGDFFALA--PSLQGDVVF 134 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~---~~~~~~~-----~~~~~~~~~d~~~~~--~~~~~D~v~ 134 (189)
.+|||..+|.|..++-++..|++|+++|.||-.....+. ++....- ..+++++++|..+++ +..++|+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 489999999999999999889999999999976544433 3322211 137899999999987 456899999
Q ss_pred ECCCCCCCc
Q psy13204 135 LSPPWGGPE 143 (189)
Q Consensus 135 ~npp~~~~~ 143 (189)
+||+|....
T Consensus 157 ~DPMFp~~~ 165 (234)
T PF04445_consen 157 FDPMFPERK 165 (234)
T ss_dssp E--S-----
T ss_pred ECCCCCCcc
Confidence 999998744
No 189
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.71 E-value=7.6e-08 Score=75.05 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=71.3
Q ss_pred EEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC---CCCccEEEECCCCCC
Q psy13204 66 VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---SLQGDVVFLSPPWGG 141 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~npp~~~ 141 (189)
+|+|++||.|+++..+.+.|.+ +.++|+++.+++..+.|... .++++|+.+... ...+|+++++|||+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 5899999999999999988877 57899999999998888641 256677776652 346999999999998
Q ss_pred CccccccccccccCcCCCCch-hHHHHhhhcCCceEE
Q psy13204 142 PEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGY 177 (189)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~ 177 (189)
.+.........+ +. ...+ .++.......|+..+
T Consensus 75 fS~ag~~~~~~d--~r-~~L~~~~~~~i~~~~P~~~v 108 (275)
T cd00315 75 FSIAGKRKGFED--TR-GTLFFEIIRILKEKKPKYFL 108 (275)
T ss_pred hhHHhhcCCCCC--ch-HHHHHHHHHHHHhcCCCEEE
Confidence 766552221111 11 1112 555666666666544
No 190
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.71 E-value=1.3e-07 Score=73.63 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccEEEE
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVVFL 135 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~~ 135 (189)
.+.+||++|||+|..+..+.+. ..+++++|+++++++.+++++...+ + ..+++++.+|..++. ...+||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3679999999999999888776 3579999999999999999875432 1 136888899987754 2468999999
Q ss_pred CCCCC
Q psy13204 136 SPPWG 140 (189)
Q Consensus 136 npp~~ 140 (189)
|++..
T Consensus 152 D~~~~ 156 (270)
T TIGR00417 152 DSTDP 156 (270)
T ss_pred eCCCC
Confidence 98754
No 191
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.70 E-value=7.4e-08 Score=70.92 Aligned_cols=65 Identities=29% Similarity=0.396 Sum_probs=50.5
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---------CCCC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---------APSL 128 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~ 128 (189)
++++.+|||+|||+|.++..+++. ..+++++|+++.+ .. .+++++++|+.+. .+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 355899999999999999988776 3479999999854 12 3678888887653 2345
Q ss_pred CccEEEECC
Q psy13204 129 QGDVVFLSP 137 (189)
Q Consensus 129 ~~D~v~~np 137 (189)
.+|+|++|+
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 799999985
No 192
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.68 E-value=1.1e-07 Score=74.32 Aligned_cols=86 Identities=26% Similarity=0.381 Sum_probs=72.1
Q ss_pred CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS 136 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n 136 (189)
++..|||+|++.|+-+..+++. ...+++.|+++..+...+.++...|+ .++.+.+.|..... ....||.|+.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 3889999999999999998876 35899999999999999999999998 57888888887763 33469999999
Q ss_pred CCCCCCccccccc
Q psy13204 137 PPWGGPEYARSSF 149 (189)
Q Consensus 137 pp~~~~~~~~~~~ 149 (189)
+||.+.+...+..
T Consensus 164 aPCSg~G~i~r~p 176 (283)
T PF01189_consen 164 APCSGLGTIRRNP 176 (283)
T ss_dssp CSCCCGGGTTTCT
T ss_pred CCccchhhhhhcc
Confidence 9999987665333
No 193
>KOG3010|consensus
Probab=98.66 E-value=1e-08 Score=76.60 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCC
Q psy13204 50 PEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSL 128 (189)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 128 (189)
|-.+...++..-.....++|+|||+|..++.++..-.+|+|+|+|++|++.|++..+..-..........+..++. ..+
T Consensus 20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~ 99 (261)
T KOG3010|consen 20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE 99 (261)
T ss_pred cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence 3456666666665455889999999988888888888999999999999998776543322224455555555554 467
Q ss_pred CccEEEECCCCCCCccccccccccccC
Q psy13204 129 QGDVVFLSPPWGGPEYARSSFSIDNIF 155 (189)
Q Consensus 129 ~~D~v~~npp~~~~~~~~~~~~~~~~l 155 (189)
++|+|++---+|+.+.........++|
T Consensus 100 SVDlI~~Aqa~HWFdle~fy~~~~rvL 126 (261)
T KOG3010|consen 100 SVDLITAAQAVHWFDLERFYKEAYRVL 126 (261)
T ss_pred ceeeehhhhhHHhhchHHHHHHHHHHc
Confidence 899999876666655555444455555
No 194
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.61 E-value=2.4e-07 Score=73.69 Aligned_cols=101 Identities=23% Similarity=0.358 Sum_probs=70.6
Q ss_pred EEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECCCCC
Q psy13204 66 VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPPWG 140 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~npp~~ 140 (189)
+++|++||.|+++..+.++|.+ +.++|+++.+.+..+.|.. ....+|+.+.. +. .+|+++..|||+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 6899999999999999999876 5689999999999988874 77888888765 32 699999999999
Q ss_pred CCccccccccccccCcCCCCch-hHHHHhhhcCCceEEE
Q psy13204 141 GPEYARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGYY 178 (189)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~~ 178 (189)
..+.........+- . ...+ .++.......|...++
T Consensus 73 ~fS~ag~~~~~~d~--r-~~L~~~~~~~v~~~~Pk~~~~ 108 (335)
T PF00145_consen 73 GFSIAGKRKGFDDP--R-NSLFFEFLRIVKELKPKYFLL 108 (335)
T ss_dssp TTSTTSTHHCCCCH--T-TSHHHHHHHHHHHHS-SEEEE
T ss_pred eEeccccccccccc--c-chhhHHHHHHHhhccceEEEe
Confidence 98776632222221 1 1133 6677777777776554
No 195
>KOG4300|consensus
Probab=98.61 E-value=2.6e-08 Score=72.87 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=74.4
Q ss_pred CEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceE-EEeCCcccCC--CCCCccEEEECCCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQ-FIQGDFFALA--PSLQGDVVFLSPPWG 140 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~--~~~~~D~v~~npp~~ 140 (189)
..||++|||+|..--+.- ..+.+|+++|.++.|-+.+.+.++.+.- .++. +++++..+.. ++.++|+|++ .+.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~--Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVC--TLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEE--EEE
Confidence 357999999999665553 3488999999999999999998887744 4665 9999999887 7789999988 344
Q ss_pred CCcccc---ccccccccC-cCCCCchhHHHHhhh
Q psy13204 141 GPEYAR---SSFSIDNIF-PEQGGGRRLFQVARG 170 (189)
Q Consensus 141 ~~~~~~---~~~~~~~~l-~~~~~g~~~~~~~~~ 170 (189)
.++..+ .+..+.++| |+ |.+.++++.++
T Consensus 155 LCSve~~~k~L~e~~rlLRpg--G~iifiEHva~ 186 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPG--GRIIFIEHVAG 186 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCC--cEEEEEecccc
Confidence 444333 445567777 54 44566666543
No 196
>KOG2915|consensus
Probab=98.54 E-value=8.2e-07 Score=67.66 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEE
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVF 134 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~ 134 (189)
+.+|.+|++-|.|+|.++.++++.. .+++.+|......+.|++.++..++.+++++++-|+...- .+..+|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 4569999999999999999999984 6899999999999999999999999889999999987653 467899999
Q ss_pred ECCCCCCCcc
Q psy13204 135 LSPPWGGPEY 144 (189)
Q Consensus 135 ~npp~~~~~~ 144 (189)
+|.|--+...
T Consensus 183 LDlPaPw~Ai 192 (314)
T KOG2915|consen 183 LDLPAPWEAI 192 (314)
T ss_pred EcCCChhhhh
Confidence 9988766443
No 197
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.54 E-value=3.5e-09 Score=78.55 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHhCC-CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204 49 TPEKVAQHIASRCK-ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-- 125 (189)
Q Consensus 49 ~~~~~~~~~~~~~~-~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 125 (189)
.|+.+++.+...-. +-.+++|+|||+|..+..+..+..+++|+|+|..|++.|.++- + .-+..++++..+.
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg----~--YD~L~~Aea~~Fl~~ 183 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG----L--YDTLYVAEAVLFLED 183 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc----c--hHHHHHHHHHHHhhh
Confidence 56666665543222 1468999999999999999999899999999999999986542 2 2234445544444
Q ss_pred -CCCCccEEEECCCCCCCccccc-cccccccCcCCCCchhHHHHh
Q psy13204 126 -PSLQGDVVFLSPPWGGPEYARS-SFSIDNIFPEQGGGRRLFQVA 168 (189)
Q Consensus 126 -~~~~~D~v~~npp~~~~~~~~~-~~~~~~~l~~~~~g~~~~~~~ 168 (189)
.+..||+|+.--.+..++..+. ......++.+ ||+..|+.-
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~--gGlfaFSvE 226 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAP--GGLFAFSVE 226 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCC--CceEEEEec
Confidence 4567999887433333333332 2234445533 466555543
No 198
>PLN02823 spermine synthase
Probab=98.54 E-value=6.1e-07 Score=71.68 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCC--CCCCccEEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALA--PSLQGDVVF 134 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~ 134 (189)
+..++||.+|+|.|..+.++.+. ..+++.+|++++.++.|++.+...+ + ..+++++.+|..+++ ...+||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 34779999999999999988875 4679999999999999999876432 1 247999999999886 345899999
Q ss_pred ECCC
Q psy13204 135 LSPP 138 (189)
Q Consensus 135 ~npp 138 (189)
+|.+
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 9963
No 199
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.54 E-value=3.9e-07 Score=68.81 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=65.6
Q ss_pred CEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP 138 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~npp 138 (189)
..+||+|||.|.+.+.+|+.. ...+|||+....+..|...+...++ .|+.+++.|+.+.+ ++.+.|-|++|=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999999999984 4689999999999999999999998 49999999998865 4448998888766
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
--+
T Consensus 129 DPW 131 (227)
T COG0220 129 DPW 131 (227)
T ss_pred CCC
Confidence 444
No 200
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.53 E-value=4.9e-07 Score=65.71 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEeCCcccCC-----CCCCccEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-----PSLQGDVVF 134 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-----~~~~~D~v~ 134 (189)
+.+|||+|||+|..++.+++. +.+|+.-|.++ .++.++.|+..++ ...++.+...|..+.. ....||+|+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il 124 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL 124 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence 889999999999999999998 77899999999 9999999999887 4457888887765422 345799988
Q ss_pred E-CCCC
Q psy13204 135 L-SPPW 139 (189)
Q Consensus 135 ~-npp~ 139 (189)
. |--|
T Consensus 125 asDv~Y 130 (173)
T PF10294_consen 125 ASDVLY 130 (173)
T ss_dssp EES--S
T ss_pred Eecccc
Confidence 7 4333
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.51 E-value=6.2e-07 Score=63.60 Aligned_cols=92 Identities=20% Similarity=0.135 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204 49 TPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123 (189)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 123 (189)
+...+++.|+..+.+ |..|+++|.|+|-++-+..++| ..++++|.|++.+....+.. +.++++++|+.+
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~ 105 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFD 105 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhh
Confidence 335677778777765 7799999999999999998875 46899999999998876654 367799999887
Q ss_pred CC------CCCCccEEEECCCCCCCcccc
Q psy13204 124 LA------PSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 124 ~~------~~~~~D~v~~npp~~~~~~~~ 146 (189)
.. .+..||.|++.-|+--.....
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~ 134 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHR 134 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHH
Confidence 64 456799999998887544433
No 202
>KOG1663|consensus
Probab=98.49 E-value=1.5e-06 Score=64.80 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=75.3
Q ss_pred cccChH--HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCC
Q psy13204 46 YSVTPE--KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120 (189)
Q Consensus 46 ~~~~~~--~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d 120 (189)
....++ ++...+.+.++ +++.+|+|.-+|..++.+|.+ +++|+++|+++..++.+.+-.+..|....+++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~-ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLN-AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred eecChHHHHHHHHHHHHhC-CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 444554 23444444444 889999999999999999887 889999999999999999999999998899999999
Q ss_pred cccCC-------CCCCccEEEECCC
Q psy13204 121 FFALA-------PSLQGDVVFLSPP 138 (189)
Q Consensus 121 ~~~~~-------~~~~~D~v~~npp 138 (189)
+.+.+ ...+||.+|.|.=
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEccc
Confidence 88765 3568999999854
No 203
>KOG2078|consensus
Probab=98.46 E-value=6.9e-08 Score=77.50 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=74.4
Q ss_pred CcccCCCcccccCh-HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCc-e
Q psy13204 37 ADNDATESWYSVTP-EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHK-I 114 (189)
Q Consensus 37 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~ 114 (189)
+++.|....|+.++ ....+.+...+++|..|.|++||.|-+++.+++.+++|++.|++++++++.+.|++.+.+... +
T Consensus 222 ~Fk~DfskVYWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~i 301 (495)
T KOG2078|consen 222 RFKFDFSKVYWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAI 301 (495)
T ss_pred eEEEecceEEeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhhe
Confidence 57777665555544 334455666777799999999999999999999999999999999999999999999988665 8
Q ss_pred EEEeCCcccCC
Q psy13204 115 QFIQGDFFALA 125 (189)
Q Consensus 115 ~~~~~d~~~~~ 125 (189)
.+...|+.++.
T Consensus 302 ei~Nmda~~Fl 312 (495)
T KOG2078|consen 302 EIFNMDAKDFL 312 (495)
T ss_pred eeecccHHHHh
Confidence 99999988776
No 204
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.5e-06 Score=69.54 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=73.6
Q ss_pred CEEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC----CccEEEECCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL----QGDVVFLSPPW 139 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~D~v~~npp~ 139 (189)
-+++|++||.|++...+.++|.++ .++|+++.+++..+.|... ..++..|..+..... .+|+++..|||
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 479999999999999999999775 5799999999998888642 566777777665211 78999999999
Q ss_pred CCCccccccccccccCcCCCCch--hHHHHhhhcCCce
Q psy13204 140 GGPEYARSSFSIDNIFPEQGGGR--RLFQVARGISPNV 175 (189)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~ 175 (189)
+..+..... ....+..|.+ .++.....+.|..
T Consensus 78 Q~FS~aG~r----~~~~D~R~~L~~~~~r~I~~~~P~~ 111 (328)
T COG0270 78 QDFSIAGKR----RGYDDPRGSLFLEFIRLIEQLRPKF 111 (328)
T ss_pred cchhhcCcc----cCCcCccceeeHHHHHHHHhhCCCE
Confidence 997766622 2232222222 5666666666743
No 205
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.45 E-value=1.6e-06 Score=64.54 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=55.6
Q ss_pred EEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC-CccEEEE
Q psy13204 67 VIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL-QGDVVFL 135 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~ 135 (189)
|+|+||--|.+.+++.+.+. +++++|+++..++.|++++...++.++++++++|-++..+.. ..|+|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence 68999999999999999865 799999999999999999999999889999999988876444 4788877
No 206
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=1.6e-06 Score=68.91 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=69.4
Q ss_pred EEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCCc
Q psy13204 67 VIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~ 143 (189)
|+|++||.|+++..+.++|.++ .++|+++.+.+..+.|.. . .+.++|+.+.. ....+|+++..|||+..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 6899999999999999999886 579999999999888863 2 34556766654 223689999999999977
Q ss_pred cccccccccccCcCCCCch-hHHHHhhhcCCceEE
Q psy13204 144 YARSSFSIDNIFPEQGGGR-RLFQVARGISPNVGY 177 (189)
Q Consensus 144 ~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~~~ 177 (189)
......... ..++..+ .++.......|+.++
T Consensus 74 ~ag~~~~~~---d~r~~L~~~~~r~i~~~~P~~~v 105 (315)
T TIGR00675 74 IAGKRKGFE---DTRGTLFFEIVRILKEKKPKFFL 105 (315)
T ss_pred hhcccCCCC---CchhhHHHHHHHHHhhcCCCEEE
Confidence 655322211 1111112 455555666666544
No 207
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.37 E-value=2.9e-06 Score=59.58 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCCEEEEecCCCChHHHHHHH-----h-CCeEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEeCCcccCCCCCCccEEE
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAA-----V-CQKVISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALAPSLQGDVVF 134 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~-----~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~D~v~ 134 (189)
+...|+|+|||.|.++..++. . +.+|+++|.++..++.+.......+ ...+..+..++..+.......++++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 104 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDILV 104 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEEE
Confidence 377999999999999999988 3 7799999999999999988887766 3345666666655443344556666
Q ss_pred E
Q psy13204 135 L 135 (189)
Q Consensus 135 ~ 135 (189)
.
T Consensus 105 g 105 (141)
T PF13679_consen 105 G 105 (141)
T ss_pred E
Confidence 5
No 208
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=1.1e-06 Score=64.00 Aligned_cols=80 Identities=26% Similarity=0.298 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204 52 KVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL 128 (189)
Q Consensus 52 ~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 128 (189)
.+++++..+-+. +++|||+|+|+|.-++.+++.|+ .|++.|+.|...+.++.|++.++. ++.++..|... .+.
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~ 141 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPP 141 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCc
Confidence 345555443222 99999999999999999999976 588999999999999999999997 89999999876 456
Q ss_pred CccEEEE
Q psy13204 129 QGDVVFL 135 (189)
Q Consensus 129 ~~D~v~~ 135 (189)
.+|+++.
T Consensus 142 ~~Dl~La 148 (218)
T COG3897 142 AFDLLLA 148 (218)
T ss_pred ceeEEEe
Confidence 7898766
No 209
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.32 E-value=6.5e-06 Score=64.73 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=62.7
Q ss_pred CCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------CCCCccEEE
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------PSLQGDVVF 134 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~ 134 (189)
++..++|..+|.|+.+..+++. ..+|+|+|.++.+++.+++.+...+ .++.+++++..++. ....+|.|+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 4779999999999999999876 4789999999999999999876543 48999999988754 224699999
Q ss_pred ECCCCC
Q psy13204 135 LSPPWG 140 (189)
Q Consensus 135 ~npp~~ 140 (189)
+|.=..
T Consensus 98 ~DLGvS 103 (305)
T TIGR00006 98 VDLGVS 103 (305)
T ss_pred EeccCC
Confidence 985443
No 210
>PRK11524 putative methyltransferase; Provisional
Probab=98.31 E-value=3.1e-06 Score=66.34 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhC-CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204 50 PEKVAQHIASRC-KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 106 (189)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 106 (189)
|..+.+.+.... .+|+.|||++||+|+.++++.+.+.+.+|+|++++.++.|++++.
T Consensus 194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 355666655554 459999999999999999999999999999999999999999875
No 211
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.31 E-value=6.6e-06 Score=61.33 Aligned_cols=91 Identities=30% Similarity=0.395 Sum_probs=54.1
Q ss_pred cChHHHHHHHHHhC--CCCCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHHH-------HhCC-CCceE
Q psy13204 48 VTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNAS-------VYGV-SHKIQ 115 (189)
Q Consensus 48 ~~~~~~~~~~~~~~--~~~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~ 115 (189)
..+..+.+.+ +.+ .++++++|+|||.|...+.++.. +. +++|||+.+...+.|+.... ..|. ..+++
T Consensus 26 i~~~~~~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 26 ISPEFVSKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp CHHHHHHHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred cCHHHHHHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 3344444433 333 34889999999999998888754 54 59999999998887765432 2333 24688
Q ss_pred EEeCCcccCC--C--CCCccEEEECCCC
Q psy13204 116 FIQGDFFALA--P--SLQGDVVFLSPPW 139 (189)
Q Consensus 116 ~~~~d~~~~~--~--~~~~D~v~~npp~ 139 (189)
+..+|+.+.. . -...|+|++|--.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTC 132 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TT
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccc
Confidence 8999987643 1 1357999997544
No 212
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.31 E-value=5.8e-06 Score=61.09 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=59.9
Q ss_pred hcCCcccCCCcccccChHHHHHHHHHhC----CC--CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHH
Q psy13204 34 LADADNDATESWYSVTPEKVAQHIASRC----KA--SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~ 103 (189)
+.++.-+-...-+..-|-.++..+..+. .. +-+++|.|||+|.+..-+.-. -..|+|-|+++++++.|++
T Consensus 16 fAsG~VL~sApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 16 FASGRVLYSAPGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK 95 (246)
T ss_dssp CSTTTSS--BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred hcCCeEEecCCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence 3344333333333444545555554433 22 558999999999977666432 4579999999999999998
Q ss_pred HHHHh-----------------------------------------CCCCceEEEeCCcccCC------CCCCccEEEEC
Q psy13204 104 NASVY-----------------------------------------GVSHKIQFIQGDFFALA------PSLQGDVVFLS 136 (189)
Q Consensus 104 ~~~~~-----------------------------------------~~~~~~~~~~~d~~~~~------~~~~~D~v~~n 136 (189)
|+... |-.....+.+.|+++.. .....|+|+.|
T Consensus 96 NL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTD 175 (246)
T PF11599_consen 96 NLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITD 175 (246)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE
T ss_pred hhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEec
Confidence 87521 11234678888888743 33457999999
Q ss_pred CCCCCC
Q psy13204 137 PPWGGP 142 (189)
Q Consensus 137 pp~~~~ 142 (189)
.||+.+
T Consensus 176 lPYG~~ 181 (246)
T PF11599_consen 176 LPYGEM 181 (246)
T ss_dssp --CCCS
T ss_pred CCCccc
Confidence 999964
No 213
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.30 E-value=2.9e-06 Score=59.39 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=49.9
Q ss_pred EEEEecCCCChHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204 66 VVIDGFCGCGGNTIQFAAVCQ--KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 124 (189)
+++|+|||.|.++..+++.+. +++++|.++.+++.+++++..+++ .++++++..+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeCC
Confidence 489999999999999998854 699999999999999999998887 3688887776553
No 214
>KOG1661|consensus
Probab=98.29 E-value=6.6e-06 Score=60.56 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhC--------C-CCceEEEeC
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYG--------V-SHKIQFIQG 119 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~--------~-~~~~~~~~~ 119 (189)
+.+.+...+.+|..+||+|+|+|.++..+++. |...+|||.-++.++++++|+...- + ..+..++.+
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 34445555677999999999999999999976 3345899999999999999986543 1 136788899
Q ss_pred CcccCC-CCCCccEEEEC
Q psy13204 120 DFFALA-PSLQGDVVFLS 136 (189)
Q Consensus 120 d~~~~~-~~~~~D~v~~n 136 (189)
|..... +..+||.|.+.
T Consensus 152 Dgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred CccccCCccCCcceEEEc
Confidence 988775 55689999984
No 215
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.26 E-value=4.8e-06 Score=66.49 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=52.0
Q ss_pred CCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh---------CCCCceEEEeCCcccCC-----CC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVY---------GVSHKIQFIQGDFFALA-----PS 127 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~d~~~~~-----~~ 127 (189)
++..|||+|||-|+...-+..+ -..++|+|++..+++.|+++.... .......++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5789999999999988777766 567899999999999999988321 11125678888876432 22
Q ss_pred --CCccEEEEC
Q psy13204 128 --LQGDVVFLS 136 (189)
Q Consensus 128 --~~~D~v~~n 136 (189)
..||+|-+=
T Consensus 142 ~~~~FDvVScQ 152 (331)
T PF03291_consen 142 RSRKFDVVSCQ 152 (331)
T ss_dssp TTS-EEEEEEE
T ss_pred cCCCcceeehH
Confidence 489999884
No 216
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.25 E-value=7.1e-06 Score=62.98 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhCC---CCceEEEeCCcccCC--
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGV---SHKIQFIQGDFFALA-- 125 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~-- 125 (189)
+....+...+..++||=+|.|.|+.+.++.+.. .+++.||+++..++.|++.+..... ..+++++.+|...+.
T Consensus 66 l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 66 LVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp HHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT
T ss_pred HhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh
Confidence 333333344558999999999999999998874 6899999999999999988765322 247999999998876
Q ss_pred CCC-CccEEEECCCC
Q psy13204 126 PSL-QGDVVFLSPPW 139 (189)
Q Consensus 126 ~~~-~~D~v~~npp~ 139 (189)
... +||+|+.|.+-
T Consensus 146 ~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTD 160 (246)
T ss_dssp SSST-EEEEEEESSS
T ss_pred ccCCcccEEEEeCCC
Confidence 234 89999998765
No 217
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.23 E-value=1.7e-05 Score=59.89 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCEEEEecCCCChHHHHHH--HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC---CCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~v~~npp 138 (189)
|++|+=+|=+.- .+++++ ....+|+.+|+++..++..++.++..|+ +++....|+.+.+|. .+||+++.|||
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 889987773332 333333 3467899999999999999999999999 599999999988754 58999999999
Q ss_pred CCCCcc
Q psy13204 139 WGGPEY 144 (189)
Q Consensus 139 ~~~~~~ 144 (189)
|...+.
T Consensus 122 yT~~G~ 127 (243)
T PF01861_consen 122 YTPEGL 127 (243)
T ss_dssp SSHHHH
T ss_pred CCHHHH
Confidence 997443
No 218
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=98.23 E-value=4.9e-06 Score=62.55 Aligned_cols=54 Identities=22% Similarity=0.482 Sum_probs=41.3
Q ss_pred hHHHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHH
Q psy13204 50 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 50 ~~~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 103 (189)
|..+.+.+.. ...+++.|||++||+|+.+.++.+.+.+.+|+|++++.++.|++
T Consensus 177 P~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4455555444 44559999999999999999999999999999999999998864
No 219
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.22 E-value=4.3e-05 Score=64.58 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHhCCC----CCEEEEecCCCChHHHHHHHh---C---CeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEE
Q psy13204 49 TPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAV---C---QKVISIDIDPAKLRLAQHNASVYGVSH-KIQFI 117 (189)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~~~~~---~---~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~ 117 (189)
+|..+...++..+.+ +..+.|++||+|++.....+. + ..++|.|.++.+...++.|+..++... .....
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~ 278 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNII 278 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcc
Confidence 456677777665442 468999999999998876442 1 358999999999999999988777632 33444
Q ss_pred eCCcccCC---CCCCccEEEECCCCCCCcccc--------ccccccccC-cCCCCchhHHHHhhh-cC--CceEEEcCCC
Q psy13204 118 QGDFFALA---PSLQGDVVFLSPPWGGPEYAR--------SSFSIDNIF-PEQGGGRRLFQVARG-IS--PNVGYYLPRT 182 (189)
Q Consensus 118 ~~d~~~~~---~~~~~D~v~~npp~~~~~~~~--------~~~~~~~~l-~~~~~g~~~~~~~~~-~~--~~~~~~lp~~ 182 (189)
.+|.+..+ ....||++++||||....... ...-+...+ +...+++.++.+... +. +.....+|..
T Consensus 279 ~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 279 NADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred cCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 55554432 345699999999998643211 011111222 223356655555433 22 4556666765
Q ss_pred CC
Q psy13204 183 SD 184 (189)
Q Consensus 183 ~~ 184 (189)
.-
T Consensus 359 vl 360 (501)
T TIGR00497 359 IL 360 (501)
T ss_pred cc
Confidence 43
No 220
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.20 E-value=5.1e-06 Score=62.04 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCEEEEecCCCChHHHHH--HHhCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCccc-CC-----CCCCccEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQF--AAVCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFA-LA-----PSLQGDVVF 134 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~--~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~-----~~~~~D~v~ 134 (189)
..++||+|.|.--+=--+ ...|++.+|-|+++.+++.|+.++..+ ++...++.+...-.+ .. ..+.||+++
T Consensus 79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl 158 (292)
T COG3129 79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL 158 (292)
T ss_pred ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence 457789987754422222 233889999999999999999999887 665556666543222 22 356899999
Q ss_pred ECCCCCCC
Q psy13204 135 LSPPWGGP 142 (189)
Q Consensus 135 ~npp~~~~ 142 (189)
|||||+..
T Consensus 159 CNPPFh~s 166 (292)
T COG3129 159 CNPPFHDS 166 (292)
T ss_pred cCCCcchh
Confidence 99999974
No 221
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.19 E-value=2.4e-06 Score=64.68 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRL 100 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~ 100 (189)
+.++||+|||+|.++..+++.| .+|+|+|+++.++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 7799999999999999999995 479999999987765
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.19 E-value=4.7e-06 Score=66.08 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=56.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCCCC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPPWG 140 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp~~ 140 (189)
.++..++|+||++|+++..+.++|.+|++||..+ +-.. +... .+++....|...+.+ ...+|++++|.-..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~----L~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmve~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS----LMDT---GQVEHLRADGFKFRPPRKNVDWLVCDMVEK 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh----hhCC---CCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence 4588999999999999999999999999999655 2111 1111 478999999888765 66799999986654
Q ss_pred C
Q psy13204 141 G 141 (189)
Q Consensus 141 ~ 141 (189)
+
T Consensus 282 P 282 (357)
T PRK11760 282 P 282 (357)
T ss_pred H
Confidence 4
No 223
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.16 E-value=2.8e-05 Score=64.72 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeE-EEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----------------
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKV-ISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP---------------- 126 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------------- 126 (189)
.-+++|++||.|+++..+.+.|.++ .++|+++.+.+..+.|.... ......++|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 3489999999999999999888765 67999999999888875311 122344455544421
Q ss_pred --CCCccEEEECCCCCCCcccc
Q psy13204 127 --SLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 127 --~~~~D~v~~npp~~~~~~~~ 146 (189)
...+|+++..|||+..+...
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhc
Confidence 12579999999999977655
No 224
>PRK13699 putative methylase; Provisional
Probab=98.15 E-value=1.3e-05 Score=60.72 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=49.2
Q ss_pred hHHHHHHHHHh-CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204 50 PEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 108 (189)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (189)
|..+.+.+... ..+|+.|||++||+|+.++++.+.|.+.+|+|++++..+.+.+++...
T Consensus 149 P~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 149 PVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred cHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 45566655543 455999999999999999999999999999999999999998887643
No 225
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.14 E-value=9.6e-06 Score=68.45 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=64.6
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~npp 138 (189)
+..++|+|||.|.+.+.+|.. ...++|+|+....+..+...+...++ .|+.+++.|+... .+..++|.|+++=|
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 678899999999999999988 56789999999999999888888888 5888888887433 36678999999866
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
--+
T Consensus 427 DPW 429 (506)
T PRK01544 427 DPW 429 (506)
T ss_pred CCC
Confidence 544
No 226
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.13 E-value=2.7e-05 Score=57.90 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=70.1
Q ss_pred HHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204 54 AQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG 130 (189)
Q Consensus 54 ~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 130 (189)
...++..++.+..+.|+||--|.+..++.+. ...+++.|+++..++.|..++..+++.+.+++.++|.+... .+..+
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCc
Confidence 3445566666777999999999999999887 45789999999999999999999999889999999997776 44578
Q ss_pred cEEEE
Q psy13204 131 DVVFL 135 (189)
Q Consensus 131 D~v~~ 135 (189)
|+++.
T Consensus 87 d~ivI 91 (226)
T COG2384 87 DVIVI 91 (226)
T ss_pred CEEEE
Confidence 98887
No 227
>KOG4058|consensus
Probab=98.10 E-value=1.3e-05 Score=55.80 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=69.1
Q ss_pred ccccChHHHHHHHHHhCCC--CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCc
Q psy13204 45 WYSVTPEKVAQHIASRCKA--SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDF 121 (189)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 121 (189)
|-..+.+++... +..++. ....+|+|+|.|...+.+++.| ...+|+|+||..+.+++-.+-+.|+.++..|..-|.
T Consensus 53 YVpAtteQv~nV-LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 53 YVPATTEQVENV-LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred ccCccHHHHHHH-HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 334456665544 444443 4689999999999999999998 568999999999999999988899988899999999
Q ss_pred ccCC-CCCCccEEEE
Q psy13204 122 FALA-PSLQGDVVFL 135 (189)
Q Consensus 122 ~~~~-~~~~~D~v~~ 135 (189)
.+.. .+..+-+|+.
T Consensus 132 wK~dl~dy~~vviFg 146 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIFG 146 (199)
T ss_pred hhccccccceEEEee
Confidence 8886 3333334443
No 228
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.06 E-value=4.1e-05 Score=56.14 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204 66 VVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 135 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 135 (189)
+++|+|+|.|.-++.++-. ..+++.+|-+..-+...++-....++ .+++++++.+.+......||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEEEe
Confidence 8999999999999988765 66899999999999999999999999 589999999999445678999998
No 229
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.00 E-value=9.6e-06 Score=64.46 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=65.8
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC-----C-CCceEEEeCCcccCC--CCC
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG-----V-SHKIQFIQGDFFALA--PSL 128 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~~~d~~~~~--~~~ 128 (189)
+..+...+|+=+|.|.|.-..++.+. ..+++-+|++|+|++.++++..... + ..+++++..|+.++. ..+
T Consensus 285 s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 285 SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 33444679999999999999999886 5689999999999999996654322 1 236899999999997 445
Q ss_pred CccEEEECCCCCC
Q psy13204 129 QGDVVFLSPPWGG 141 (189)
Q Consensus 129 ~~D~v~~npp~~~ 141 (189)
.||+||.|-|=-.
T Consensus 365 ~fD~vIVDl~DP~ 377 (508)
T COG4262 365 MFDVVIVDLPDPS 377 (508)
T ss_pred cccEEEEeCCCCC
Confidence 8999999877543
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=3.5e-05 Score=57.62 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=62.0
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCC-ccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQ-GDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~D~v~~ 135 (189)
+.+++|+|+|.|.-++.+|-. ..+++-+|-...-+...+.-....++ .+++++++.++++..... ||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEe
Confidence 479999999999999998733 56799999999999999998899999 589999999999875445 999988
No 231
>KOG1975|consensus
Probab=97.97 E-value=7.8e-06 Score=63.89 Aligned_cols=82 Identities=23% Similarity=0.267 Sum_probs=60.3
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh-CC----CCceEEEeCCcccCC-------
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKLRLAQHNASVY-GV----SHKIQFIQGDFFALA------- 125 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~~----~~~~~~~~~d~~~~~------- 125 (189)
...++++.++|+|||.|+..+-.-++| ..++|+|+.+-+++.|+.+.+.. +. ...+.++.+|...-.
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 344558899999999999999887775 46899999999999998877532 11 125789999876532
Q ss_pred CCCCccEEEECCCCC
Q psy13204 126 PSLQGDVVFLSPPWG 140 (189)
Q Consensus 126 ~~~~~D~v~~npp~~ 140 (189)
++.+||+|-+---+|
T Consensus 193 ~dp~fDivScQF~~H 207 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFH 207 (389)
T ss_pred CCCCcceeeeeeeEe
Confidence 334599987644444
No 232
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.97 E-value=4.7e-05 Score=58.14 Aligned_cols=67 Identities=27% Similarity=0.443 Sum_probs=53.3
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~ 140 (189)
..+|+|+|+|.|.++..++++ +.+++.+|+ |+.++.+++ .++++++.+|+++..|. +|++++.--.|
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGG
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhh
Confidence 668999999999999999887 678999999 889888877 36999999999955554 99999843333
No 233
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.95 E-value=5.3e-05 Score=59.11 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=62.8
Q ss_pred CCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEeCCcccCCC--CCCccEEEEC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYG--V-SHKIQFIQGDFFALAP--SLQGDVVFLS 136 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~--~~~~D~v~~n 136 (189)
.++||=+|.|.|+.+.++.+.. .+++.||+++..++.+++.+.... . ..+++++.+|..++.. ..+||+|++|
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 4699999999999999999985 689999999999999999886543 2 2579999999999872 2379999997
Q ss_pred C
Q psy13204 137 P 137 (189)
Q Consensus 137 p 137 (189)
-
T Consensus 157 ~ 157 (282)
T COG0421 157 S 157 (282)
T ss_pred C
Confidence 3
No 234
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.94 E-value=6.6e-05 Score=58.18 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCEEEEecCCCChHHHHHHHhC----CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC----QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~ 135 (189)
.-+|+|+.||.|...+.+.... .++...|.++..++..++.++..|+.+-++|.++|+++.. -....++++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 6689999999999999887652 4688999999999999999999999655699999999864 1234677777
Q ss_pred CCCCCCC
Q psy13204 136 SPPWGGP 142 (189)
Q Consensus 136 npp~~~~ 142 (189)
.--|...
T Consensus 216 sGL~ElF 222 (311)
T PF12147_consen 216 SGLYELF 222 (311)
T ss_pred ecchhhC
Confidence 5444443
No 235
>KOG1122|consensus
Probab=97.91 E-value=7.7e-05 Score=60.34 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEEC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLS 136 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~n 136 (189)
++.+|+|+++-.|+-+.++|.. -..+++.|.+...++..+.|+...|+ .+..+.+.|..+++ -..+||-|++|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fDRVLLD 319 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFDRVLLD 319 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccceeeec
Confidence 3899999999999988888765 45789999999999999999999998 57778888887764 12289999999
Q ss_pred CCCCCCccc
Q psy13204 137 PPWGGPEYA 145 (189)
Q Consensus 137 pp~~~~~~~ 145 (189)
.||.+.+..
T Consensus 320 APCSGtgvi 328 (460)
T KOG1122|consen 320 APCSGTGVI 328 (460)
T ss_pred CCCCCCccc
Confidence 999995433
No 236
>KOG1227|consensus
Probab=97.82 E-value=3.2e-05 Score=59.91 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=64.1
Q ss_pred HhCCCCCEEEEecCCCChHHH-HHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204 59 SRCKASDVVIDGFCGCGGNTI-QFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 135 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~-~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 135 (189)
.....+..|+|+.+|.|.+++ .+..+|+ .|+++|.||.+++..+.++..++..++..++.+|.....+....|-|.+
T Consensus 190 ~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 190 NTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred hcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence 333348899999999999999 6667755 6899999999999999999999887788889999887767677777666
No 237
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.82 E-value=0.00017 Score=55.08 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=57.0
Q ss_pred cccccChHHHHHHHHHh-C---C--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204 44 SWYSVTPEKVAQHIASR-C---K--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117 (189)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-~---~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (189)
+-|-.+.++..+++... . + ...++||+|+|.|..+..++..-.+|++.|.|+.|....++ .|. +++
T Consensus 69 ~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~----~vl 140 (265)
T PF05219_consen 69 SMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF----TVL 140 (265)
T ss_pred cEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC----eEE
Confidence 33444567777766533 1 1 25689999999999999999999999999999999766433 333 333
Q ss_pred eCCcccCC-CCCCccEEEE
Q psy13204 118 QGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 118 ~~d~~~~~-~~~~~D~v~~ 135 (189)
..+- +. .+.+||+|.|
T Consensus 141 ~~~~--w~~~~~~fDvIsc 157 (265)
T PF05219_consen 141 DIDD--WQQTDFKFDVISC 157 (265)
T ss_pred ehhh--hhccCCceEEEee
Confidence 3322 22 3457999987
No 238
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.82 E-value=7.1e-05 Score=60.84 Aligned_cols=77 Identities=27% Similarity=0.399 Sum_probs=60.6
Q ss_pred CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCC-ceEEEeCCcccCC--CCCCccEEEECC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSH-KIQFIQGDFFALA--PSLQGDVVFLSP 137 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~--~~~~~D~v~~np 137 (189)
+-++||..+|+|.-++..+.. ..+|+..|+|+++++..+.|++.+++.. .+++.+.|+...+ ....||+|=.|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 458999999999999999887 3579999999999999999999999976 5899999998876 67889999999
Q ss_pred CCCC
Q psy13204 138 PWGG 141 (189)
Q Consensus 138 p~~~ 141 (189)
||+-
T Consensus 129 PfGS 132 (377)
T PF02005_consen 129 PFGS 132 (377)
T ss_dssp -SS-
T ss_pred CCCC
Confidence 6664
No 239
>PHA01634 hypothetical protein
Probab=97.79 E-value=0.00017 Score=49.06 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS 136 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n 136 (189)
+++|+|+|++.|..+++++-+|+ .|+++|.++...+..+++.+.+.+-+...... ++. .-..||+.++|
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 89999999999999999998876 59999999999999999988775432221111 121 22468888885
No 240
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.76 E-value=0.00015 Score=55.12 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCC
Q psy13204 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSL 128 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 128 (189)
+.+...+...++...+|+|+|||.=-+++..... +..++|+|++..+++....-+...+. +.++...|.....+..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~ 170 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKE 170 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTS
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCC
Confidence 3344444444555889999999999999887655 56899999999999999998888886 6777777877766666
Q ss_pred CccEEEE
Q psy13204 129 QGDVVFL 135 (189)
Q Consensus 129 ~~D~v~~ 135 (189)
..|+.++
T Consensus 171 ~~DlaLl 177 (251)
T PF07091_consen 171 PADLALL 177 (251)
T ss_dssp EESEEEE
T ss_pred CcchhhH
Confidence 7888776
No 241
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.75 E-value=5.5e-05 Score=55.98 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHhCCCCCE-EEEecCCCChHHHHHHHhCCe--EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204 49 TPEKVAQHIASRCKASDV-VIDGFCGCGGNTIQFAAVCQK--VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125 (189)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~-vlD~g~G~G~~~~~~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 125 (189)
+.+.+.+.+.+.++.... |||+|||+|..+.+++++-.. -.--|.++....-.+..+...++.+-..-+..|+.+..
T Consensus 10 Nk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 10 NKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred CHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 445677777777777555 999999999999999998544 34688998887777777777766321233444444432
Q ss_pred ---------CCCCccEEEECCCCCCCcccc
Q psy13204 126 ---------PSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 126 ---------~~~~~D~v~~npp~~~~~~~~ 146 (189)
....||+|++--..|.+.+..
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~ 119 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSA 119 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHH
Confidence 134799999866666554443
No 242
>PRK00536 speE spermidine synthase; Provisional
Probab=97.70 E-value=0.00056 Score=52.88 Aligned_cols=78 Identities=10% Similarity=-0.140 Sum_probs=58.5
Q ss_pred CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh--CCC-CceEEEeCCcccCCCCCCccEEEECC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY--GVS-HKIQFIQGDFFALAPSLQGDVVFLSP 137 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~D~v~~np 137 (189)
.+..++||=+|.|.|+.+.++.+...+|+-||++++.++.+++.++.. ++. .+++++.. ..+. ..++||+|++|-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 455899999999999999999998779999999999999999865432 221 35666541 1111 236899999995
Q ss_pred CCC
Q psy13204 138 PWG 140 (189)
Q Consensus 138 p~~ 140 (189)
.+.
T Consensus 148 ~~~ 150 (262)
T PRK00536 148 EPD 150 (262)
T ss_pred CCC
Confidence 544
No 243
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.66 E-value=3e-05 Score=57.36 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204 52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG 130 (189)
Q Consensus 52 ~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 130 (189)
.+++++.. .+.+..|.|+|||.+.++..+. .+.+|..+|+.. .+-.++.+|+...+ ++.++
T Consensus 62 ~iI~~l~~-~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 62 VIIEWLKK-RPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA----------------PNPRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-----------------SSTTEEES-TTS-S--TT-E
T ss_pred HHHHHHHh-cCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC----------------CCCCEEEecCccCcCCCCce
Confidence 34444432 2336789999999999995543 456899999975 13357788987776 77899
Q ss_pred cEEEECCCCCCCccccccccccccCcCCCCchhHHHHhhhc
Q psy13204 131 DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGI 171 (189)
Q Consensus 131 D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~ 171 (189)
|+++++...-+..+.+...+..++|+. +|.+.+.|..++.
T Consensus 124 Dv~VfcLSLMGTn~~~fi~EA~RvLK~-~G~L~IAEV~SRf 163 (219)
T PF05148_consen 124 DVAVFCLSLMGTNWPDFIREANRVLKP-GGILKIAEVKSRF 163 (219)
T ss_dssp EEEEEES---SS-HHHHHHHHHHHEEE-EEEEEEEEEGGG-
T ss_pred eEEEEEhhhhCCCcHHHHHHHHheecc-CcEEEEEEecccC
Confidence 999998888887777755555556633 1333444444443
No 244
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.62 E-value=4.1e-05 Score=55.89 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=43.9
Q ss_pred CCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------C--CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------P--SLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~--~~~ 129 (189)
+.+|+|+||++|+++..+.+++ .+|+|+|+.+. ... ..+..+++|..+.. . ...
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 4899999999999999999987 78999999886 111 24555565554321 2 258
Q ss_pred ccEEEECC
Q psy13204 130 GDVVFLSP 137 (189)
Q Consensus 130 ~D~v~~np 137 (189)
+|+|++|-
T Consensus 92 ~dlv~~D~ 99 (181)
T PF01728_consen 92 FDLVLSDM 99 (181)
T ss_dssp ESEEEE--
T ss_pred cceecccc
Confidence 99999996
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00017 Score=53.37 Aligned_cols=68 Identities=28% Similarity=0.248 Sum_probs=51.5
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------CC
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PS 127 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~ 127 (189)
.++++..|+|+||-.|+++..+++.. ..|+|+|+.|-.. + .++.++++|+.+.. ..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~-~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I-PGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C-CCceEEeeeccCccHHHHHHHHcCC
Confidence 34558999999999999999998873 3499999987322 1 36899999988754 23
Q ss_pred CCccEEEECCCC
Q psy13204 128 LQGDVVFLSPPW 139 (189)
Q Consensus 128 ~~~D~v~~npp~ 139 (189)
..+|+|++|+--
T Consensus 110 ~~~DvV~sD~ap 121 (205)
T COG0293 110 APVDVVLSDMAP 121 (205)
T ss_pred CCcceEEecCCC
Confidence 357999987544
No 246
>KOG2361|consensus
Probab=97.58 E-value=6.6e-05 Score=56.54 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=49.7
Q ss_pred EEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC-----CCCCCccEEEE
Q psy13204 66 VVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL-----APSLQGDVVFL 135 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~ 135 (189)
+++++|||.|.....+.+- +-.++++|.+|.+++..+++..... .++...+.|+... ....++|.+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 7899999999999999775 3579999999999999988876443 2444444443322 14457887665
No 247
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00038 Score=55.64 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=63.3
Q ss_pred CCEEEEecCCCChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--CCccEEEECCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--LQGDVVFLSPPW 139 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~npp~ 139 (189)
...|+|..||+|.-++..+.. +. +++.-|+||.+++.+++|++.+.. .+..+++.|+..++.. ..||+|=+| ||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiD-PF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDID-PF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecC-CC
Confidence 678999999999999999876 44 799999999999999999999944 3677777888777633 689999998 55
Q ss_pred CC
Q psy13204 140 GG 141 (189)
Q Consensus 140 ~~ 141 (189)
+-
T Consensus 131 GS 132 (380)
T COG1867 131 GS 132 (380)
T ss_pred CC
Confidence 53
No 248
>KOG2899|consensus
Probab=97.52 E-value=0.00017 Score=54.41 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=39.2
Q ss_pred CCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNAS 106 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~ 106 (189)
+..+||+||-+|.+++.+++. + ..++|+||++..++.|+++.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 789999999999999999997 4 458999999999999999875
No 249
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.52 E-value=0.0023 Score=47.96 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=63.2
Q ss_pred cccChHHHHHHHHHhCC-----CCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEE
Q psy13204 46 YSVTPEKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117 (189)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-----~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (189)
|.+.+..++..+..-+. +|.+||-+|+.+|+....++.. .+.|++||.++...+....-++.. .|+-.+
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeee
Confidence 44455667777755443 4889999999999999999887 458999999998877666555444 488999
Q ss_pred eCCcccCC----CCCCccEEEECCC
Q psy13204 118 QGDFFALA----PSLQGDVVFLSPP 138 (189)
Q Consensus 118 ~~d~~~~~----~~~~~D~v~~npp 138 (189)
.+|+.... --..+|+|+.|-.
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred eccCCChHHhhcccccccEEEecCC
Confidence 99988653 1237999999855
No 250
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.47 E-value=7.9e-05 Score=53.41 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=46.9
Q ss_pred EEEeCCHHHHHHHHHHHHHhC--CCCceEEEeCCcccCC-CCCCccEEEECCCCCCCcccc-ccccccccCcC
Q psy13204 89 ISIDIDPAKLRLAQHNASVYG--VSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYAR-SSFSIDNIFPE 157 (189)
Q Consensus 89 ~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~-~~~~~~~~l~~ 157 (189)
+|+|+|++|++.|+++....+ ...+++++++|+.+.+ ++.+||+|++.--.+...... ...++.+++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 489999999999987765332 2247899999999886 556899999854333322111 33456666644
No 251
>KOG1501|consensus
Probab=97.45 E-value=0.00028 Score=57.53 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=53.6
Q ss_pred CEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 125 (189)
..|||+|.|+|.++..++++|+ .|+++|.=..|.+.|++-...+|.+++|+++.--+.+..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 3679999999999999999865 699999999999999999999999889998877665543
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.45 E-value=0.00016 Score=56.93 Aligned_cols=77 Identities=23% Similarity=0.364 Sum_probs=55.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----C--CCCccE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----P--SLQGDV 132 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~~~D~ 132 (189)
.++..++|..-|.|+.+..+.+. ..+++|+|.++.+++.|++++... .+++.++++++.++. . ...+|.
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 34779999999999999999876 679999999999999998876644 358999999987754 1 237999
Q ss_pred EEECCCCC
Q psy13204 133 VFLSPPWG 140 (189)
Q Consensus 133 v~~npp~~ 140 (189)
|++|.=..
T Consensus 97 iL~DLGvS 104 (310)
T PF01795_consen 97 ILFDLGVS 104 (310)
T ss_dssp EEEE-S--
T ss_pred EEEccccC
Confidence 99985443
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.43 E-value=0.0014 Score=52.21 Aligned_cols=72 Identities=10% Similarity=0.061 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccC
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFAL 124 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~ 124 (189)
....|+..++++..++|+|||+|.-+..+.++ ..+.+++|+|.++++.+..++.....+ -.+.-+++|..+.
T Consensus 66 ~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 66 HSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34566677777889999999999976554332 356789999999999999988744332 1445588887664
No 254
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.41 E-value=0.0012 Score=51.45 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=39.2
Q ss_pred HHHHHHhCCC--CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHH
Q psy13204 54 AQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASV 107 (189)
Q Consensus 54 ~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~ 107 (189)
...+..+++. +.+|||+|||.|....++... -.+++++|.|+.+++.++.-+..
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 3334444433 679999999999866655543 45689999999999998876543
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0016 Score=50.81 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=64.7
Q ss_pred HHHHHHhCC--CCCEEEEecCCCChHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---
Q psy13204 54 AQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVC---QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--- 125 (189)
Q Consensus 54 ~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 125 (189)
...+.+.+. ++...+|..-|.|+.+.++.... .+++|+|.++.+++.|++.....+ ++++++++++.+..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence 333444443 37889999999999999998873 679999999999999999987766 48999999877654
Q ss_pred ---CCCCccEEEECC
Q psy13204 126 ---PSLQGDVVFLSP 137 (189)
Q Consensus 126 ---~~~~~D~v~~np 137 (189)
....+|-|++|.
T Consensus 90 ~~~~i~~vDGiL~DL 104 (314)
T COG0275 90 KELGIGKVDGILLDL 104 (314)
T ss_pred HhcCCCceeEEEEec
Confidence 224788888874
No 256
>KOG3045|consensus
Probab=97.30 E-value=0.00024 Score=54.17 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~ 142 (189)
..+|.|+|||.+.++. ..-.+|+.+|+.+ .+-+++.+|+.+.+ ++.+.|+++++...-+.
T Consensus 181 ~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt 241 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT 241 (325)
T ss_pred ceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhhcc
Confidence 6688899999998876 3356788999854 25578899998876 77899999998777776
Q ss_pred ccccccccccccCcCCCCchhHHHHhhh
Q psy13204 143 EYARSSFSIDNIFPEQGGGRRLFQVARG 170 (189)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~ 170 (189)
...+......++|+. +|.+.+.+..++
T Consensus 242 n~~df~kEa~RiLk~-gG~l~IAEv~SR 268 (325)
T KOG3045|consen 242 NLADFIKEANRILKP-GGLLYIAEVKSR 268 (325)
T ss_pred cHHHHHHHHHHHhcc-CceEEEEehhhh
Confidence 665544455566643 133344444333
No 257
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.21 E-value=0.001 Score=49.64 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCEEEEecCCCChHHHHH-HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC-CCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS-LQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~ 135 (189)
..+++|.|||.|+.+-.+ .....+|-.+|.++..++.|++.+..... .-.++.+.-.+++.|. .+||+|++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccCCCCcEeEEEe
Confidence 568999999999999877 44577899999999999999876544221 2467888888888765 68999998
No 258
>KOG2940|consensus
Probab=97.18 E-value=0.00062 Score=51.17 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=57.8
Q ss_pred CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~ 141 (189)
...++|+|||.|.....+... ..+++-+|.|-.|++.++..- ..++ .+....+|-.... ..+++|+|+.....|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 678999999999999998766 457899999999998876432 1333 4556667755544 6789999999777766
Q ss_pred Cc
Q psy13204 142 PE 143 (189)
Q Consensus 142 ~~ 143 (189)
..
T Consensus 150 ~N 151 (325)
T KOG2940|consen 150 TN 151 (325)
T ss_pred hc
Confidence 43
No 259
>KOG2198|consensus
Probab=97.09 E-value=0.0024 Score=51.14 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=64.4
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHhCC------eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAVCQ------KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------- 125 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------- 125 (189)
-++++++|||+|+-.|+-++.+.+... .|++-|.++..+....+......- .+..+...|+..++
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCc
Confidence 345699999999999999988877633 799999999999888887754433 35566666655443
Q ss_pred --CCCCccEEEECCCCCCCcccc
Q psy13204 126 --PSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 126 --~~~~~D~v~~npp~~~~~~~~ 146 (189)
....||-|++|-||.+-+...
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~r 253 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLR 253 (375)
T ss_pred hhhhhhcceeEEecccCCCcccc
Confidence 223699999999999864433
No 260
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.08 E-value=0.00067 Score=53.18 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=78.8
Q ss_pred hhcCCcccCCCcccccCh--HHHHHHHHHhCCCCCEEEEecCCCCh--HHHHH--HHh------CCeEEEEeCCHHHHHH
Q psy13204 33 TLADADNDATESWYSVTP--EKVAQHIASRCKASDVVIDGFCGCGG--NTIQF--AAV------CQKVISIDIDPAKLRL 100 (189)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vlD~g~G~G~--~~~~~--~~~------~~~v~~vD~~~~~~~~ 100 (189)
.+.+.+.+....||.... +.+.+.+... ...-+|+..||++|- .++++ ... ..+|+|.|+|+.+++.
T Consensus 84 ~li~~ltineT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~ 162 (287)
T PRK10611 84 AFINALTTNLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEK 162 (287)
T ss_pred HHHHHhhCCCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHH
Confidence 333445555556666543 2222222211 124599999999997 44444 332 2479999999999999
Q ss_pred HHHHHH------------------H------------hCCCCceEEEeCCcccCC--CCCCccEEEECCCCCCCcccc--
Q psy13204 101 AQHNAS------------------V------------YGVSHKIQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYAR-- 146 (189)
Q Consensus 101 a~~~~~------------------~------------~~~~~~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~~~~-- 146 (189)
|++-.- . ..+...++|.+.|+.+.. +...||+|+|--.+...+...
T Consensus 163 Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~ 242 (287)
T PRK10611 163 ARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQE 242 (287)
T ss_pred HHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHH
Confidence 976420 0 002245788888888743 346899999944443332222
Q ss_pred -ccccccccCcCCCCchhHHHHhhhc
Q psy13204 147 -SSFSIDNIFPEQGGGRRLFQVARGI 171 (189)
Q Consensus 147 -~~~~~~~~l~~~~~g~~~~~~~~~~ 171 (189)
....+...|++ ||+.++.+...+
T Consensus 243 ~vl~~l~~~L~p--gG~L~lG~sEsl 266 (287)
T PRK10611 243 RILRRFVPLLKP--DGLLFAGHSENF 266 (287)
T ss_pred HHHHHHHHHhCC--CcEEEEeCcccc
Confidence 22345556644 477665555444
No 261
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.98 E-value=0.00022 Score=47.32 Aligned_cols=70 Identities=27% Similarity=0.299 Sum_probs=26.5
Q ss_pred EEecCCCChHHHHHHHh---C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCC
Q psy13204 68 IDGFCGCGGNTIQFAAV---C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPP 138 (189)
Q Consensus 68 lD~g~G~G~~~~~~~~~---~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp 138 (189)
+|+|+..|..+..+++. . .+++++|..+. .+.+++.++..++..+++++++++.+.. +..++|++++|-+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 58999999988888764 2 37999999996 4444455555666568999999997765 3468999999853
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.00042 Score=52.23 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCce-EEEeCCcccCCC---CCCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKI-QFIQGDFFALAP---SLQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~---~~~~D~v~~npp 138 (189)
+..+||+|+.+|+|+-.+.++|+ +|+|+|..-..+..--++ . .++ .....|+....+ ....|++++|-.
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d---~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D---PRVIVLERTNVRYLTPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C---CcEEEEecCChhhCCHHHcccCCCeEEEEee
Confidence 89999999999999999999965 699999876544332111 1 233 333334444331 126788999877
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
|.-
T Consensus 154 FIS 156 (245)
T COG1189 154 FIS 156 (245)
T ss_pred hhh
Confidence 754
No 263
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.92 E-value=0.0044 Score=48.25 Aligned_cols=71 Identities=31% Similarity=0.327 Sum_probs=44.6
Q ss_pred CEEEEecCCCC-hHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEeCCcccCC-CCCCccEEEE
Q psy13204 65 DVVIDGFCGCG-GNTIQFAAV---CQKVISIDIDPAKLRLAQHNAS-VYGVSHKIQFIQGDFFALA-PSLQGDVVFL 135 (189)
Q Consensus 65 ~~vlD~g~G~G-~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 135 (189)
.+|+=+|||.= ..++.+++. +..++++|+++++.+.+++-.. ..++..++.++++|..+.. .-..||+|+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 59999999954 455555644 4678999999999999988776 5566668999999998775 3357999988
No 264
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.013 Score=43.34 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=66.6
Q ss_pred cccChHHHHHHHHHhCC-----CCCEEEEecCCCChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204 46 YSVTPEKVAQHIASRCK-----ASDVVIDGFCGCGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118 (189)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-----~~~~vlD~g~G~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (189)
|.+.+..++..++.-+. ++..||=+|+.+|+.....+.- + ..+++||.++...+-...-+... .|+-.+.
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL 130 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPIL 130 (231)
T ss_pred eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeee
Confidence 45556677777766554 3899999999999999999886 3 67999999998876665555433 4788889
Q ss_pred CCcccCC----CCCCccEEEEC
Q psy13204 119 GDFFALA----PSLQGDVVFLS 136 (189)
Q Consensus 119 ~d~~~~~----~~~~~D~v~~n 136 (189)
+|+.... --..+|+|+.|
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe
Confidence 9987643 12468999987
No 265
>KOG2912|consensus
Probab=96.76 E-value=0.0034 Score=49.38 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=55.1
Q ss_pred EEecCCCChHHHHH-H-HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------CCCCccEEEECC
Q psy13204 68 IDGFCGCGGNTIQF-A-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------PSLQGDVVFLSP 137 (189)
Q Consensus 68 lD~g~G~G~~~~~~-~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~D~v~~np 137 (189)
+|+|.|.-.+--.+ + +.++...+.|++...+..|..|+..+++...+.+++....+.. ++..||.+.+||
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence 57766544432222 2 2377889999999999999999999999877887777554432 334699999999
Q ss_pred CCCCC
Q psy13204 138 PWGGP 142 (189)
Q Consensus 138 p~~~~ 142 (189)
||...
T Consensus 187 PFfe~ 191 (419)
T KOG2912|consen 187 PFFEN 191 (419)
T ss_pred chhhc
Confidence 99865
No 266
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.72 E-value=0.0086 Score=44.38 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=54.5
Q ss_pred CCEEEEecCCCCh--HHHHH--HHh----C---CeEEEEeCCHHHHHHHHHHH--------------HHh-----C----
Q psy13204 64 SDVVIDGFCGCGG--NTIQF--AAV----C---QKVISIDIDPAKLRLAQHNA--------------SVY-----G---- 109 (189)
Q Consensus 64 ~~~vlD~g~G~G~--~~~~~--~~~----~---~~v~~vD~~~~~~~~a~~~~--------------~~~-----~---- 109 (189)
.-+|+..||++|- .++++ ... . .+++|.|+|+.+++.|++-. ... +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4589999999998 34333 331 1 37999999999999986521 000 1
Q ss_pred ----CCCceEEEeCCccc-CCCCCCccEEEECCCCCCCcccc---ccccccccCcCCCCchhHHHHhhhc
Q psy13204 110 ----VSHKIQFIQGDFFA-LAPSLQGDVVFLSPPWGGPEYAR---SSFSIDNIFPEQGGGRRLFQVARGI 171 (189)
Q Consensus 110 ----~~~~~~~~~~d~~~-~~~~~~~D~v~~npp~~~~~~~~---~~~~~~~~l~~~~~g~~~~~~~~~~ 171 (189)
+...++|.+.|..+ ..+...||+|+|--.....+... ....+.+.|.+ ||+.++.....+
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p--gG~L~lG~sE~l 179 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP--GGYLFLGHSESL 179 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE--EEEEEE-TT--S
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC--CCEEEEecCccC
Confidence 11468899999998 44556899999943333222221 12234455533 476666555444
No 267
>KOG4589|consensus
Probab=96.68 E-value=0.0024 Score=46.52 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=46.6
Q ss_pred CCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeC-CcccC---------CCC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG-DFFAL---------APS 127 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~---------~~~ 127 (189)
++++.+|||+||..|.++..+.+. ...|.|||+-.- ... ..++++++ |+.+. +++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 456999999999999999999887 457899998541 111 23455555 44432 266
Q ss_pred CCccEEEECCC
Q psy13204 128 LQGDVVFLSPP 138 (189)
Q Consensus 128 ~~~D~v~~npp 138 (189)
..+|+|++|.-
T Consensus 135 r~VdvVlSDMa 145 (232)
T KOG4589|consen 135 RPVDVVLSDMA 145 (232)
T ss_pred CcccEEEeccC
Confidence 78999999843
No 268
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.015 Score=45.65 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=48.1
Q ss_pred hHHHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204 50 PEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 108 (189)
Q Consensus 50 ~~~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (189)
|..+...... ....+..|+|+++|+|..++.+.+.+...+|+|++++.++.+.++....
T Consensus 208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 3444444433 3444999999999999999999999999999999999999998887644
No 269
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.55 E-value=0.0094 Score=41.60 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=43.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---CCCCccEEEECCCCCCCccc
Q psy13204 87 KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---PSLQGDVVFLSPPWGGPEYA 145 (189)
Q Consensus 87 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~npp~~~~~~~ 145 (189)
+|+|+|+.+++++.+++++...++..++++++.+-.... +...+|+++.|.=|-+-+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk 62 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDK 62 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-T
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCC
Confidence 589999999999999999999998778999999876654 33589999999777654433
No 270
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.52 E-value=0.0039 Score=48.18 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=61.5
Q ss_pred CCEEEEecCCCChHHHHHHH--hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC---CCccEEEECCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS---LQGDVVFLSPP 138 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~v~~npp 138 (189)
|+.|+=+| -.-..+++++- +..++..+|+++..+....+.+...|+ +++..+.-|..+.+|. ..||+++.|||
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCch
Confidence 66777777 44445555544 356899999999999999999999998 5799999999988754 47999999999
Q ss_pred CCCC
Q psy13204 139 WGGP 142 (189)
Q Consensus 139 ~~~~ 142 (189)
+...
T Consensus 231 eTi~ 234 (354)
T COG1568 231 ETIK 234 (354)
T ss_pred hhHH
Confidence 8753
No 271
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.49 E-value=0.028 Score=43.67 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=75.6
Q ss_pred CCcccCCCcccccCh--HHHHHHHHHhC----C-CCCEEEEecCCCCh--HHHHH--HHhC-------CeEEEEeCCHHH
Q psy13204 36 DADNDATESWYSVTP--EKVAQHIASRC----K-ASDVVIDGFCGCGG--NTIQF--AAVC-------QKVISIDIDPAK 97 (189)
Q Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~~~vlD~g~G~G~--~~~~~--~~~~-------~~v~~vD~~~~~ 97 (189)
+.+......||.... +.+.+.+...+ . ..-+|+..||++|- .++++ .+.. .+++|.|+|..+
T Consensus 62 ~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~ 141 (268)
T COG1352 62 DALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV 141 (268)
T ss_pred HHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence 445555556666533 23344443322 2 25689999999997 44444 3332 478999999999
Q ss_pred HHHHHHHH-----HHhCC-----------------------CCceEEEeCCcccCC-CCCCccEEEECCCCCCCcccc--
Q psy13204 98 LRLAQHNA-----SVYGV-----------------------SHKIQFIQGDFFALA-PSLQGDVVFLSPPWGGPEYAR-- 146 (189)
Q Consensus 98 ~~~a~~~~-----~~~~~-----------------------~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~~~~~~-- 146 (189)
++.|+.-. ...++ ...|.|.+.|..+-. ....||+|+| +.-+-|.+
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC---RNVLIYFd~~ 218 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC---RNVLIYFDEE 218 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEE---cceEEeeCHH
Confidence 99986422 10111 134677777777665 4567999988 22222222
Q ss_pred ----ccccccccCcCCCCchhHHHHhhhc
Q psy13204 147 ----SSFSIDNIFPEQGGGRRLFQVARGI 171 (189)
Q Consensus 147 ----~~~~~~~~l~~~~~g~~~~~~~~~~ 171 (189)
....+.+.|++ ||+.++-....+
T Consensus 219 ~q~~il~~f~~~L~~--gG~LflG~sE~~ 245 (268)
T COG1352 219 TQERILRRFADSLKP--GGLLFLGHSETI 245 (268)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEccCccc
Confidence 22345556655 577666555554
No 272
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.42 E-value=0.002 Score=53.63 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=51.9
Q ss_pred EEEEecCCCChHHHHHHHhCCeEEEE---eCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEEC---CC
Q psy13204 66 VVIDGFCGCGGNTIQFAAVCQKVISI---DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLS---PP 138 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~n---pp 138 (189)
.+||+|||+|.|+..+..++-.+..+ |..+..++.|.+ .|+ ...+-..-...++ ++..||+|-+- -|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGv--pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGV--PAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCc--chhhhhhccccccCCccchhhhhccccccc
Confidence 67999999999999999887665443 344444555433 333 1111111122333 77788887552 23
Q ss_pred CCCCccccccccccccCcCCCCchhHHH
Q psy13204 139 WGGPEYARSSFSIDNIFPEQGGGRRLFQ 166 (189)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 166 (189)
|+..+. ..+.++.++|.+ ||+.+++
T Consensus 194 W~~~~g-~~l~evdRvLRp--GGyfv~S 218 (506)
T PF03141_consen 194 WHPNDG-FLLFEVDRVLRP--GGYFVLS 218 (506)
T ss_pred chhccc-ceeehhhhhhcc--CceEEec
Confidence 333221 145677777744 4665443
No 273
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.35 E-value=0.005 Score=40.72 Aligned_cols=32 Identities=19% Similarity=0.050 Sum_probs=28.3
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDP 95 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~ 95 (189)
...++|+|||+|.+.--+.+.|..-.|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 45799999999999999999999999999754
No 274
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.32 E-value=0.036 Score=37.95 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=48.4
Q ss_pred EEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc--CC-CC-CCccEEEECCCC
Q psy13204 67 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA--LA-PS-LQGDVVFLSPPW 139 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~-~~-~~~D~v~~npp~ 139 (189)
++|+|||.|... .+... +..++++|.++.++..++......+. ..+.+...|... .. .. ..+|++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 33333 24889999999999885544433221 116788888766 22 33 378988555544
Q ss_pred CC
Q psy13204 140 GG 141 (189)
Q Consensus 140 ~~ 141 (189)
+.
T Consensus 130 ~~ 131 (257)
T COG0500 130 HL 131 (257)
T ss_pred hc
Confidence 43
No 275
>KOG3115|consensus
Probab=96.29 E-value=0.008 Score=44.45 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=50.1
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEeCCcccCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYG------VSHKIQFIQGDFFALAP 126 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~ 126 (189)
...+.|+|||=|++.+.++.. ..-++|.||--...++.++++.... ...++.+...+++.+.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 456899999999999999988 4457899998888888888776543 22578888888888764
No 276
>KOG2360|consensus
Probab=96.27 E-value=0.018 Score=46.43 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=69.2
Q ss_pred CCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CC--CCccEEEECC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PS--LQGDVVFLSP 137 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~D~v~~np 137 (189)
|..|+|.+|-.|.-+..++.. -.+++|+|.++...+..+..+...|. ..++..++|+.... +. ..+-.+++||
T Consensus 214 g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 214 GSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEKFRDVTYILVDP 292 (413)
T ss_pred CCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCCCCcccccceeEEEeCC
Confidence 889999999999988888664 56799999999999999999999998 46778899988853 21 2466899999
Q ss_pred CCCCCcccccc
Q psy13204 138 PWGGPEYARSS 148 (189)
Q Consensus 138 p~~~~~~~~~~ 148 (189)
++++.+...+.
T Consensus 293 scSgSgm~~r~ 303 (413)
T KOG2360|consen 293 SCSGSGMVSRQ 303 (413)
T ss_pred CCCCCccccce
Confidence 99998876633
No 277
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.93 E-value=0.016 Score=44.55 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=35.2
Q ss_pred HHHHHHHHhCC--CCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHH
Q psy13204 52 KVAQHIASRCK--ASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLA 101 (189)
Q Consensus 52 ~~~~~~~~~~~--~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a 101 (189)
.+...+.+.++ ...+++|++||+|..+..+.+.+.+++.-|+++..+...
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~ 58 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFW 58 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHH
Confidence 35666777777 488999999999999999988889999999999765443
No 278
>KOG1709|consensus
Probab=95.85 E-value=0.053 Score=40.63 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC---CCCCCccEEEEC
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL---APSLQGDVVFLS 136 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~n 136 (189)
.+|.+||++|-|.|.......++ -..-+-+|-+|+.++..+.+.-... .++.+..+-.++. +++..||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccccccCcceeEee
Confidence 45999999999999999888776 3345679999999988776653322 3677777765554 377789999987
No 279
>KOG1253|consensus
Probab=95.85 E-value=0.0041 Score=51.62 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=66.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEE
Q psy13204 62 KASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVV 133 (189)
Q Consensus 62 ~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v 133 (189)
..+-+|||..|++|..++..++. ..+|++.|.++.+++..+.|.+.++..+.++...+|+.... ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 34779999999999999999886 45789999999999999999999988767788888876654 33689999
Q ss_pred EECCCCCC
Q psy13204 134 FLSPPWGG 141 (189)
Q Consensus 134 ~~npp~~~ 141 (189)
=+| ||+-
T Consensus 188 DLD-PyGs 194 (525)
T KOG1253|consen 188 DLD-PYGS 194 (525)
T ss_pred ecC-CCCC
Confidence 998 5664
No 280
>KOG3987|consensus
Probab=95.83 E-value=0.003 Score=46.82 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=48.8
Q ss_pred CCcccccChHHHHHHHHHhCCC----CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHH
Q psy13204 42 TESWYSVTPEKVAQHIASRCKA----SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~----~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 103 (189)
+.+-|-.++++.+++++-.-+. +.++||+|+|.|-.+..++....+|++.|+|..|....+.
T Consensus 87 rGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 87 RGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred cCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 4445556778888877543222 5799999999999999998888889999999999987654
No 281
>KOG0919|consensus
Probab=95.81 E-value=0.0092 Score=45.27 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=51.1
Q ss_pred CEEEEecCCCChHHHHHHHh--CCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAV--CQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGG 141 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~~~ 141 (189)
-+|+++.+|.|++.-++..+ .++ |.++|+++-+-+....|...+ +....++.-..+.++ ...++|.++|.|||+.
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~-L~k~~~I~~lt~kef-d~l~~~m~lMSPpCQP 81 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSN-LVKTRNIQSLTVKEF-DKLQANMLLMSPPCQP 81 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccc-hhhccccceeeHhhh-hhcccceEeeCCCCCc
Confidence 47899999999988777554 455 678999998887776662111 101111111112222 2246899999999998
Q ss_pred Ccccc
Q psy13204 142 PEYAR 146 (189)
Q Consensus 142 ~~~~~ 146 (189)
.....
T Consensus 82 fTRiG 86 (338)
T KOG0919|consen 82 FTRIG 86 (338)
T ss_pred hhhhc
Confidence 76655
No 282
>KOG1269|consensus
Probab=95.76 E-value=0.016 Score=46.95 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=75.3
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEE-
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFL- 135 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~- 135 (189)
..+.++..++|+|||.|....+.+.- +.+++|++.++-.+..+........+.....++.+|+.+.+ ++..||.+.+
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 33444778999999999999999876 68899999999888887777666666556677888888875 7778997654
Q ss_pred CCCCCCCccccccccccccCcCCCCch-hHHHH
Q psy13204 136 SPPWGGPEYARSSFSIDNIFPEQGGGR-RLFQV 167 (189)
Q Consensus 136 npp~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~ 167 (189)
+--++.....+.+..+-+.+++ ||+ .+.+.
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kp--GG~~i~~e~ 216 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKP--GGLFIVKEW 216 (364)
T ss_pred eecccCCcHHHHHHHHhcccCC--CceEEeHHH
Confidence 4555554444444445445643 355 33333
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.56 E-value=0.038 Score=41.14 Aligned_cols=66 Identities=32% Similarity=0.373 Sum_probs=38.0
Q ss_pred HHHHhCCCCCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204 56 HIASRCKASDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124 (189)
Q Consensus 56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 124 (189)
.+...++ ++.++++|.-.|+.++.+|.. .++|+|+|++........ .....+.++++++++|+.+.
T Consensus 26 eli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 26 ELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp HHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSST
T ss_pred HHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCH
Confidence 3444455 789999999999999888764 368999999654432211 12233336899999998764
No 284
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.55 E-value=0.045 Score=42.54 Aligned_cols=37 Identities=16% Similarity=-0.025 Sum_probs=34.1
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 100 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~ 100 (189)
..+||=+|||.|+++.++|+.|..+.|.|.|--|+-.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~ 93 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA 93 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH
Confidence 5799999999999999999999999999999988644
No 285
>KOG0822|consensus
Probab=95.51 E-value=0.069 Score=45.05 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCC-----CCEEEEecCCCChHHHHHHHh------CCeEEEEeCCHHHHHHHHH-HHHHhCCCCceEEEeC
Q psy13204 52 KVAQHIASRCKA-----SDVVIDGFCGCGGNTIQFAAV------CQKVISIDIDPAKLRLAQH-NASVYGVSHKIQFIQG 119 (189)
Q Consensus 52 ~~~~~~~~~~~~-----~~~vlD~g~G~G~~~~~~~~~------~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~ 119 (189)
.+.+.+.++.+. -.++.=+|+|.|-+.-+..++ --+++++|.||.++-..+. |....+ ++++++.+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~--~~Vtii~~ 428 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD--NRVTIISS 428 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc--CeeEEEec
Confidence 344555555443 235678999999987666543 2367999999999977654 333333 48999999
Q ss_pred CcccCCCC-CCccEEEE
Q psy13204 120 DFFALAPS-LQGDVVFL 135 (189)
Q Consensus 120 d~~~~~~~-~~~D~v~~ 135 (189)
|..++.+. .+.|++++
T Consensus 429 DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 429 DMRKWNAPREQADIIVS 445 (649)
T ss_pred cccccCCchhhccchHH
Confidence 99999754 67888876
No 286
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.91 E-value=0.065 Score=41.52 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=37.5
Q ss_pred CEEEEecCCCC--hHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204 65 DVVIDGFCGCG--GNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124 (189)
Q Consensus 65 ~~vlD~g~G~G--~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 124 (189)
..+||+|||-- ...-+.++. .++|+-+|++|-.+..++..+..+.- ....++++|+.+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 58999999943 245555554 78999999999999988877765432 2488999998874
No 287
>KOG2651|consensus
Probab=94.80 E-value=0.12 Score=41.92 Aligned_cols=39 Identities=23% Similarity=0.087 Sum_probs=33.5
Q ss_pred CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQ 102 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~ 102 (189)
-+.|+|+|+|.|.++..++-. |..|.+||-|....+.|+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 678999999999999999765 889999999987766654
No 288
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.39 E-value=0.2 Score=34.32 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCCEEEEecCCCCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCC--C
Q psy13204 52 KVAQHIASRCKASDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPS--L 128 (189)
Q Consensus 52 ~~~~~~~~~~~~~~~vlD~g~G~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~ 128 (189)
++++.+++... ..+++++|-|.=. .+..++++|..|+++|+++. +++ . .+.++..|+.+.... .
T Consensus 3 ~~a~~ia~~~~-~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~ 69 (127)
T PF03686_consen 3 DFAEYIARLNN-YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYE 69 (127)
T ss_dssp HHHHHHHHHS--SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHT
T ss_pred hHHHHHHHhCC-CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhc
Confidence 35666666555 4599999998655 55555677999999999997 222 2 568899998875311 3
Q ss_pred CccEEEE-CCCCCC
Q psy13204 129 QGDVVFL-SPPWGG 141 (189)
Q Consensus 129 ~~D~v~~-npp~~~ 141 (189)
..|+|++ +||-..
T Consensus 70 ~a~lIYSiRPP~El 83 (127)
T PF03686_consen 70 GADLIYSIRPPPEL 83 (127)
T ss_dssp TEEEEEEES--TTS
T ss_pred CCcEEEEeCCChHH
Confidence 6788887 666654
No 289
>PTZ00357 methyltransferase; Provisional
Probab=94.20 E-value=0.22 Score=43.69 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=41.6
Q ss_pred EEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHHHhCCC--------CceEEEeCCcccCC
Q psy13204 66 VVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVS--------HKIQFIQGDFFALA 125 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~--------~~~~~~~~d~~~~~ 125 (189)
.|+=+|+|-|-+.-...++ + .++++||.|+.+......+....... +.++++..|...+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 5789999999987766554 2 47899999976554444433221111 35899999999885
No 290
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=94.14 E-value=0.064 Score=35.59 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=27.5
Q ss_pred CccEEEECCCCCCCccccccccccccCcCCCCch-hHHHHhhhc-CCceEEEcCCC
Q psy13204 129 QGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGR-RLFQVARGI-SPNVGYYLPRT 182 (189)
Q Consensus 129 ~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~-~~~~~~~lp~~ 182 (189)
.||+|+.||||..............-.. ..+ .+++....+ .+...+.+|..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~---dlY~~Fie~~~~ll~G~~~~I~P~~ 54 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKS---DLYILFIEKSLNLLNGYLSFITPNS 54 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccC---cHHHHHHHHHHHHhCCeEEEEeChH
Confidence 5899999999997654331111110122 244 444444333 45556677654
No 291
>KOG0821|consensus
Probab=94.03 E-value=0.38 Score=36.31 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=55.7
Q ss_pred CCEEEEecCCCChHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----C--------CC-
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQ-KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----P--------SL- 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~--------~~- 128 (189)
.+.|+++|.|.|+.+..+..++. +...+|+++..+.-.+.-.+.... +..+.++|++.+. + +.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~--~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~ 128 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG--KLRIHHGDVLRFKIEKAFSESLKRPWEDDP 128 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc--ceEEeccccceehHHhhcchhhcCCcccCC
Confidence 78999999999999999988754 678899999887776655554432 6777788877643 1 11
Q ss_pred CccEEEECCCCCCC
Q psy13204 129 QGDVVFLSPPWGGP 142 (189)
Q Consensus 129 ~~D~v~~npp~~~~ 142 (189)
..=-++.|.||...
T Consensus 129 p~~H~IGNLPf~i~ 142 (326)
T KOG0821|consen 129 PNVHIIGNLPFSVS 142 (326)
T ss_pred CceEEeccCCcccc
Confidence 12247889999543
No 292
>KOG3178|consensus
Probab=93.95 E-value=0.17 Score=40.53 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=50.9
Q ss_pred CEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEE
Q psy13204 65 DVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFL 135 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 135 (189)
...+|+|.|.|..+-.+...-.++-+++.+...+-.+..+.. . .++.+-+|.++-.| .-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P--~~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP--KGDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-C----CcceecccccccCC--CcCeEEE
Confidence 688999999999999998877779999999888877666654 3 36788888877643 4468888
No 293
>KOG2352|consensus
Probab=93.80 E-value=0.27 Score=41.14 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHhCCCCC-EEEEecCCCChHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCc
Q psy13204 54 AQHIASRCKASD-VVIDGFCGCGGNTIQFAAVCQK-VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQG 130 (189)
Q Consensus 54 ~~~~~~~~~~~~-~vlD~g~G~G~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 130 (189)
...+...+.+.. +++-+|||.-.++..+-..|.+ ++.+|+|+-.++.....-. ..- ....+..+|..... ++++|
T Consensus 38 ~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~-~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 38 SGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KER-PEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred HHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCC-cceEEEEecchhccCCCcce
Confidence 334444555555 8999999999999998888765 8999999998877654432 111 35788889888775 77888
Q ss_pred cEEEE
Q psy13204 131 DVVFL 135 (189)
Q Consensus 131 D~v~~ 135 (189)
|+|+.
T Consensus 116 diVId 120 (482)
T KOG2352|consen 116 DIVID 120 (482)
T ss_pred eEEEe
Confidence 88876
No 294
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.72 E-value=1 Score=33.73 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=51.7
Q ss_pred CCEEEEecCCCCh--HHHHH--HHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcc-cCCC-CCCccEEEE
Q psy13204 64 SDVVIDGFCGCGG--NTIQF--AAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF-ALAP-SLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~--~~~~~--~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~ 135 (189)
.+.+++.+|+.|. .++.+ |.+ |.+++.|-.++..+...++.+...++.+.++|+.++.. +..+ -..+|.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 5678898776543 33443 322 88999999999888888888887887656799988854 3432 245888888
Q ss_pred C
Q psy13204 136 S 136 (189)
Q Consensus 136 n 136 (189)
|
T Consensus 122 D 122 (218)
T PF07279_consen 122 D 122 (218)
T ss_pred e
Confidence 6
No 295
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.63 E-value=0.42 Score=34.34 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHH-HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--C-
Q psy13204 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--P- 126 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~- 126 (189)
+.+++.+.+....+.+|+-+||=+-...+.- .....+++..|++...-... .+ .++.=|..... +
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~~ 81 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELPE 81 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhhh
Confidence 4455555554445778888887655544444 11366889999997544321 12 34433333221 1
Q ss_pred --CCCccEEEECCCCCC
Q psy13204 127 --SLQGDVVFLSPPWGG 141 (189)
Q Consensus 127 --~~~~D~v~~npp~~~ 141 (189)
..++|+|++||||-.
T Consensus 82 ~l~~~~d~vv~DPPFl~ 98 (162)
T PF10237_consen 82 ELKGKFDVVVIDPPFLS 98 (162)
T ss_pred hcCCCceEEEECCCCCC
Confidence 248999999999943
No 296
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.47 E-value=0.06 Score=41.27 Aligned_cols=73 Identities=11% Similarity=0.276 Sum_probs=44.7
Q ss_pred EEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204 68 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 68 lD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~ 142 (189)
+....|+-.++..+.+..-+.+.+|+.+.-.+..++++... .++.+...|..+.. +...=-+|++||||...
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~ 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence 77889998898888888889999999999999988887643 47899999988743 44456799999999864
Q ss_pred c
Q psy13204 143 E 143 (189)
Q Consensus 143 ~ 143 (189)
+
T Consensus 139 ~ 139 (245)
T PF04378_consen 139 D 139 (245)
T ss_dssp T
T ss_pred h
Confidence 4
No 297
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=0.73 Score=37.29 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=35.5
Q ss_pred CCEEEEecCCCChHHHHHHHh----------CCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASVY 108 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----------~~~v~~vD~~~~~~~~a~~~~~~~ 108 (189)
.-.++++|+|.|.+..-+.+. ..++.-||.|++..+.-+++++..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 347999999999998887653 347888999999888777776544
No 298
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.09 E-value=0.23 Score=38.02 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=59.9
Q ss_pred EEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEECCCCCCC
Q psy13204 68 IDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGP 142 (189)
Q Consensus 68 lD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~ 142 (189)
+...+|+-.++..+.+..-++.+.|+-|+=....+.++. +. .++++.++|-.... +...=-+|++||||...
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d-~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~ 169 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GD-RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK 169 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--CC-cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc
Confidence 899999999999888888889999999998888888876 22 48899999977643 44456799999999975
Q ss_pred c
Q psy13204 143 E 143 (189)
Q Consensus 143 ~ 143 (189)
+
T Consensus 170 ~ 170 (279)
T COG2961 170 D 170 (279)
T ss_pred c
Confidence 4
No 299
>PRK13699 putative methylase; Provisional
Probab=93.04 E-value=0.045 Score=41.53 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=22.3
Q ss_pred EEEeCCcccCC---CCCCccEEEECCCCC
Q psy13204 115 QFIQGDFFALA---PSLQGDVVFLSPPWG 140 (189)
Q Consensus 115 ~~~~~d~~~~~---~~~~~D~v~~npp~~ 140 (189)
++.++|+.+.+ +++++|+|+.||||.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~ 31 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL 31 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc
Confidence 67888987754 788999999999997
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=93.04 E-value=0.054 Score=42.53 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=24.2
Q ss_pred ceEEEeCCcccCC---CCCCccEEEECCCCCC
Q psy13204 113 KIQFIQGDFFALA---PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 113 ~~~~~~~d~~~~~---~~~~~D~v~~npp~~~ 141 (189)
..+++++|+.+.. ++.++|+|++||||..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence 4578999998853 6678999999999974
No 301
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.13 Score=45.34 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=37.9
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 105 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (189)
+..++|.++|-|.+.+++.+.|..|+++|++|.++-..+..+
T Consensus 91 ~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavl 132 (875)
T COG1743 91 GPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred CCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHH
Confidence 778999999999999999999999999999998877666554
No 302
>KOG3924|consensus
Probab=92.95 E-value=0.28 Score=39.98 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=56.7
Q ss_pred ChHHHHHHHHH-hCCCCCEEEEecCCCChHHHHHHHhC--CeEEEEeCCHHHHHHHHHHH-------HHhCC-CCceEEE
Q psy13204 49 TPEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNA-------SVYGV-SHKIQFI 117 (189)
Q Consensus 49 ~~~~~~~~~~~-~~~~~~~vlD~g~G~G~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~-------~~~~~-~~~~~~~ 117 (189)
.+++++..+.+ .+.+++.+.|+|+|.|......+..+ ..-.|+|+....-+.|..+. +..|. ...++.+
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 34454444433 23448899999999999888887652 34678888776655554433 23343 2457888
Q ss_pred eCCcccCC----CCCCccEEEECC
Q psy13204 118 QGDFFALA----PSLQGDVVFLSP 137 (189)
Q Consensus 118 ~~d~~~~~----~~~~~D~v~~np 137 (189)
++++.+.. -....++|++|-
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN 280 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNN 280 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEec
Confidence 88877653 223567887763
No 303
>KOG2920|consensus
Probab=92.83 E-value=0.098 Score=40.71 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=31.8
Q ss_pred CCEEEEecCCCChHHHHHHHhC-CeEEEEeCCHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVC-QKVISIDIDPAKL 98 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~-~~v~~vD~~~~~~ 98 (189)
+++|+|+|||.|..++.+...+ ..+...|.|.+.+
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 8999999999999999998887 6788999998877
No 304
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.77 E-value=0.36 Score=37.43 Aligned_cols=74 Identities=19% Similarity=0.110 Sum_probs=56.9
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-CCCccEEEECCC
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-SLQGDVVFLSPP 138 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~npp 138 (189)
++.++...+|+|+-.|+++-.+.+++-.|++||.-+-+-.. -.. +.++....|-+++-| ....|..+||..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL-----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSL-----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhh-----hcc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 34558899999999999999999999999999987633221 112 367888889888876 457999999865
Q ss_pred CCC
Q psy13204 139 WGG 141 (189)
Q Consensus 139 ~~~ 141 (189)
-..
T Consensus 280 EkP 282 (358)
T COG2933 280 EKP 282 (358)
T ss_pred cCc
Confidence 544
No 305
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.33 E-value=0.64 Score=32.69 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=31.9
Q ss_pred EecCCCC--hHHHHHH--Hh--CCeEEEEeCCHHHHHHHHHH--HHHhCCCCceEEEeC
Q psy13204 69 DGFCGCG--GNTIQFA--AV--CQKVISIDIDPAKLRLAQHN--ASVYGVSHKIQFIQG 119 (189)
Q Consensus 69 D~g~G~G--~~~~~~~--~~--~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~ 119 (189)
|+|+..| .....+. .. +.+++++|.+|..++..+.+ +..+.....+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 6656553 22 67899999999999999999 666543223444443
No 306
>KOG1201|consensus
Probab=92.10 E-value=1 Score=35.46 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=53.8
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
|+.||=-|.|+|- ++.++|++|+++...|++++......+..+..| .+....+|..+.. +...
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 7888888888776 777888889999999999998877777776554 5666777766542 2347
Q ss_pred ccEEEECC
Q psy13204 130 GDVVFLSP 137 (189)
Q Consensus 130 ~D~v~~np 137 (189)
+|+++.|.
T Consensus 115 V~ILVNNA 122 (300)
T KOG1201|consen 115 VDILVNNA 122 (300)
T ss_pred ceEEEecc
Confidence 88888873
No 307
>KOG1596|consensus
Probab=91.83 E-value=0.56 Score=35.91 Aligned_cols=89 Identities=18% Similarity=0.033 Sum_probs=58.9
Q ss_pred ccChHHHHHHHHH-----hCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEe
Q psy13204 47 SVTPEKVAQHIAS-----RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118 (189)
Q Consensus 47 ~~~~~~~~~~~~~-----~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (189)
.+.+..++.-++- .++++..||=+|+++|......+.. ..-|+++|.++.+=+.+..-++.. .|+-.+.
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIi 211 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPII 211 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeee
Confidence 3333445555433 2355999999999999999888876 346899999986654433222221 4777777
Q ss_pred CCcccCC----CCCCccEEEECCC
Q psy13204 119 GDFFALA----PSLQGDVVFLSPP 138 (189)
Q Consensus 119 ~d~~~~~----~~~~~D~v~~npp 138 (189)
.|+.... .-.-+|+||+|-+
T Consensus 212 EDArhP~KYRmlVgmVDvIFaDva 235 (317)
T KOG1596|consen 212 EDARHPAKYRMLVGMVDVIFADVA 235 (317)
T ss_pred ccCCCchheeeeeeeEEEEeccCC
Confidence 7876543 1236899999854
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.73 E-value=0.67 Score=30.76 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEEC
Q psy13204 72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS 136 (189)
Q Consensus 72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~n 136 (189)
||.|.++..+++. +..++.+|.+++.++.++.. ...++.+|..+.. .-.+.+.+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 6788888888764 44899999999988776433 3578999988753 22467777773
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.70 E-value=0.42 Score=36.78 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=33.2
Q ss_pred CEEEEecCCCChHHHHHHHh----------CCeEEEEeCCHHHHHHHHHHHHH
Q psy13204 65 DVVIDGFCGCGGNTIQFAAV----------CQKVISIDIDPAKLRLAQHNASV 107 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~----------~~~v~~vD~~~~~~~~a~~~~~~ 107 (189)
-.|+|+|+|+|.++..+.+. ..+++-||.||.+.+.-++.+..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 58999999999999888764 13788999999888777777644
No 310
>KOG2793|consensus
Probab=91.15 E-value=1.7 Score=33.43 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=44.2
Q ss_pred CCEEEEecCCCChHHHHHHHh-CCeEEEEeCCHHHHHHHHHHH-----HHhCCCCceEEEeCCcccCC----CCCC-ccE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNA-----SVYGVSHKIQFIQGDFFALA----PSLQ-GDV 132 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~-----~~~~~~~~~~~~~~d~~~~~----~~~~-~D~ 132 (189)
...||++|+|+|--++.++.. +.++.--|.. ..+...+.+. ..+++..++.+...+..... .... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 457999999999988888885 6777666654 3444433332 22333224444444433332 1123 788
Q ss_pred EEE-CCCCCC
Q psy13204 133 VFL-SPPWGG 141 (189)
Q Consensus 133 v~~-npp~~~ 141 (189)
|++ |.-|..
T Consensus 166 ilasDvvy~~ 175 (248)
T KOG2793|consen 166 ILASDVVYEE 175 (248)
T ss_pred EEEeeeeecC
Confidence 776 444443
No 311
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.10 E-value=0.55 Score=34.68 Aligned_cols=62 Identities=29% Similarity=0.353 Sum_probs=42.0
Q ss_pred HHHHhCCCCCEEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204 56 HIASRCKASDVVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124 (189)
Q Consensus 56 ~~~~~~~~~~~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 124 (189)
.+...++ +..|+++|+--|+.++++|.. | .+|+++|++-..+..+-.. . .++.+++++..+.
T Consensus 63 ellw~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dp 130 (237)
T COG3510 63 ELLWELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDP 130 (237)
T ss_pred HHHHhcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCH
Confidence 3444444 789999999999999888764 5 6899999876554332221 1 3667777766553
No 312
>PRK06194 hypothetical protein; Provisional
Probab=90.96 E-value=2.5 Score=32.68 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=49.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.++| +..|+|+++..+++ .|++|+.+|.+++.++.........+. ++.++.+|+.+.. ...
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45666 55566776666654 488999999988776655554443332 6788889987642 112
Q ss_pred CccEEEECCCCCC
Q psy13204 129 QGDVVFLSPPWGG 141 (189)
Q Consensus 129 ~~D~v~~npp~~~ 141 (189)
..|+++.+.-...
T Consensus 83 ~id~vi~~Ag~~~ 95 (287)
T PRK06194 83 AVHLLFNNAGVGA 95 (287)
T ss_pred CCCEEEECCCCCC
Confidence 5799999875543
No 313
>KOG2798|consensus
Probab=89.81 E-value=0.93 Score=36.06 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=32.7
Q ss_pred CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 100 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~ 100 (189)
...+|=+|||.|+++..++..|.++-|-|.|--|+-.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHH
Confidence 5689999999999999999999999999988777633
No 314
>KOG1099|consensus
Probab=89.76 E-value=0.31 Score=37.01 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=45.1
Q ss_pred CCEEEEecCCCChHHHHHHHh--------CC---eEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--------CQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------- 125 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--------~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------- 125 (189)
-.+|+|+|+..|.++..+++. +. .+++||+.+- . .+ ..+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a----------PI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A----------PI-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C----------cc-CceEEeecccCCHhHHHHHHH
Confidence 458999999999999999886 12 3899999762 2 12 35677788876643
Q ss_pred --CCCCccEEEEC
Q psy13204 126 --PSLQGDVVFLS 136 (189)
Q Consensus 126 --~~~~~D~v~~n 136 (189)
..+..|+|++|
T Consensus 110 hfggekAdlVvcD 122 (294)
T KOG1099|consen 110 HFGGEKADLVVCD 122 (294)
T ss_pred HhCCCCccEEEeC
Confidence 34588999997
No 315
>KOG2352|consensus
Probab=89.71 E-value=0.15 Score=42.66 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--------CCCCccEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA--------PSLQGDVV 133 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~D~v 133 (189)
+..++=+|-|.|.+..++... ..+++++|++|.+++.|+.+.....- .+..+.-.|..++. .+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 566778888889988888655 46899999999999999988754432 13344444544433 33479999
Q ss_pred EEC
Q psy13204 134 FLS 136 (189)
Q Consensus 134 ~~n 136 (189)
+.|
T Consensus 375 ~~d 377 (482)
T KOG2352|consen 375 MVD 377 (482)
T ss_pred EEE
Confidence 886
No 316
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.52 E-value=4.6 Score=31.96 Aligned_cols=75 Identities=15% Similarity=-0.017 Sum_probs=48.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++.++++ .|++|+.+..+++..+.+.+.+....-..++.++..|+.+.. ...
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 566665554 4555555544 489999999988777666555543321126788888887643 124
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999988644
No 317
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.99 E-value=3.9 Score=30.97 Aligned_cols=74 Identities=11% Similarity=-0.078 Sum_probs=49.1
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..++ +.|.+|+.++.+++.++.....+...+ .++.++.+|..+.. ...
T Consensus 9 ~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 9 GKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6677766654 44444444 458999999999887776665555444 26777888876542 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|.-..
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 689999987544
No 318
>KOG2782|consensus
Probab=88.96 E-value=0.33 Score=36.55 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=58.1
Q ss_pred HHHHHHhCCC--CCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204 54 AQHIASRCKA--SDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---- 125 (189)
Q Consensus 54 ~~~~~~~~~~--~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---- 125 (189)
.......+++ +..++|..-|.|+.+..+.+. ..++++.|.+|-+.+.|....... ....+..+.+.+....
T Consensus 32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~ 110 (303)
T KOG2782|consen 32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIA 110 (303)
T ss_pred hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHH
Confidence 3444455555 889999999999999999887 456889999999998887665311 1012222233222211
Q ss_pred ----CCCCccEEEECCCCCCCc
Q psy13204 126 ----PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 126 ----~~~~~D~v~~npp~~~~~ 143 (189)
....+|-+++|.-+.-++
T Consensus 111 ~~gl~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 111 DTGLLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred HhCCCcCCcceEEeecCccccc
Confidence 345788888886666544
No 319
>PRK07478 short chain dehydrogenase; Provisional
Probab=88.91 E-value=4.8 Score=30.44 Aligned_cols=73 Identities=19% Similarity=0.009 Sum_probs=48.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|+++..+++ .|++|+.++.+++..+.+...+...+. ++.++.+|..+.. ...
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 45566 44455665555544 489999999998877766665554442 6778888876642 123
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68999988754
No 320
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=88.69 E-value=1 Score=33.80 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhCCC------CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCccc
Q psy13204 50 PEKVAQHIASRCKA------SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123 (189)
Q Consensus 50 ~~~~~~~~~~~~~~------~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 123 (189)
...+.+++.+.... .-++||+||=+....+.... -..|+.||+++ ..-.+.+.|+++
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns----------------~~~~I~qqDFm~ 94 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNS----------------QHPGILQQDFME 94 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCC----------------CCCCceeecccc
Confidence 34556666554433 24899999987765544322 23599999987 134667888888
Q ss_pred CC----CCCCccEEEECCCC
Q psy13204 124 LA----PSLQGDVVFLSPPW 139 (189)
Q Consensus 124 ~~----~~~~~D~v~~npp~ 139 (189)
.+ +.+.||+|.+....
T Consensus 95 rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred CCCCCCcccceeEEEEEEEE
Confidence 64 45689999885443
No 321
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.55 E-value=5.9 Score=29.66 Aligned_cols=75 Identities=17% Similarity=-0.009 Sum_probs=48.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|..+..+++ +|++|++++.++.....+...+...+ .++.++.+|..+.. ...
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45676444 56666665544 48899999999876655555444333 25788888887642 112
Q ss_pred CccEEEECCCCCC
Q psy13204 129 QGDVVFLSPPWGG 141 (189)
Q Consensus 129 ~~D~v~~npp~~~ 141 (189)
.+|+++.++....
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 6899998875543
No 322
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.52 E-value=4.9 Score=30.41 Aligned_cols=74 Identities=11% Similarity=-0.017 Sum_probs=49.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|+++..+++ .|++|+.++.+++..+.+.+.+...+ .++.++.+|+.+.. ...
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45566 56666776666654 48899999999977766665554443 26778888887643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+.-..
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 479998876543
No 323
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.51 E-value=5.9 Score=29.97 Aligned_cols=74 Identities=18% Similarity=0.053 Sum_probs=50.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|++|+.++.++...+.....+...+. ++.++..|..+.. ...
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56676555 56777777655 388999999998877666655554443 5778888877632 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+.-..
T Consensus 87 ~~d~li~~ag~~ 98 (255)
T PRK07523 87 PIDILVNNAGMQ 98 (255)
T ss_pred CCCEEEECCCCC
Confidence 579999887554
No 324
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.42 E-value=5.5 Score=30.12 Aligned_cols=73 Identities=12% Similarity=-0.011 Sum_probs=47.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|+++..+++ .|++|+.++.++...+.+.......+ .++.++..|..+.. .-.
T Consensus 5 ~k~vl-ItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVV-VSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEE-EECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45666 44456666665544 48999999999877666555554333 26788888876532 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.+.-.
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 67999988643
No 325
>KOG1098|consensus
Probab=88.13 E-value=0.5 Score=40.84 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=30.8
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHh---CCeEEEEeCCH
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAV---CQKVISIDIDP 95 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~ 95 (189)
.+.++..|||+||..|++...+++. +.-|+|+|+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 4566889999999999999999886 66789999876
No 326
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.12 E-value=6.1 Score=29.98 Aligned_cols=75 Identities=16% Similarity=0.014 Sum_probs=48.8
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..++ +.|++|+.++.+++..+...+.+.......++.++.+|..+.. ...
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5677766654 55555544 4589999999998877766665554212236778888876642 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.|.-.
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 68999987643
No 327
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.08 E-value=7.2 Score=30.58 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=48.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|+++..+++ .|.+|+.+..+++..+.+.+.+.......++.++..|+.+.. ...
T Consensus 16 ~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 56666 44456776666654 488999999888776655554433211136778888887643 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.|.-.
T Consensus 95 ~iD~li~nAg~ 105 (306)
T PRK06197 95 RIDLLINNAGV 105 (306)
T ss_pred CCCEEEECCcc
Confidence 58999988643
No 328
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.05 E-value=5.9 Score=30.67 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..+++ .|++|+.++.+++.++...+.+...+. ++.++..|+.+.. ...
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 556665554 4555555544 489999999998777665555543333 5778888887643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|.-..
T Consensus 83 ~id~li~nAg~~ 94 (275)
T PRK05876 83 HVDVVFSNAGIV 94 (275)
T ss_pred CCCEEEECCCcC
Confidence 579999987654
No 329
>KOG0024|consensus
Probab=87.85 E-value=2.1 Score=34.30 Aligned_cols=43 Identities=26% Similarity=0.161 Sum_probs=35.0
Q ss_pred CCCCCEEEEecCCC-ChHHHHHHHh-C-CeEEEEeCCHHHHHHHHH
Q psy13204 61 CKASDVVIDGFCGC-GGNTIQFAAV-C-QKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 61 ~~~~~~vlD~g~G~-G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~ 103 (189)
.+.|.+||=+|+|. |..+...|++ | .+|+.+|+++..++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 44599999999995 6666666776 4 579999999999999877
No 330
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=87.68 E-value=1.8 Score=34.28 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 105 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (189)
+..+.+|+-+|+|...+...+++.-.+|.+||+|+.-+..-+-++
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHH
Confidence 455889999999999899999999999999999998776655444
No 331
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.59 E-value=0.67 Score=36.22 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=26.5
Q ss_pred ceEEEeCCcccCCC-CCCc-cEEEECCCCCCCccc
Q psy13204 113 KIQFIQGDFFALAP-SLQG-DVVFLSPPWGGPEYA 145 (189)
Q Consensus 113 ~~~~~~~d~~~~~~-~~~~-D~v~~npp~~~~~~~ 145 (189)
++++.++|..+... ..+- |+|++||||.+....
T Consensus 156 ~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t 190 (274)
T COG0338 156 NATIENGDFEEVLADADSGDDFVYCDPPYLPLSAT 190 (274)
T ss_pred cCeEEcCCHHHHHhhccCCCcEEEeCCCCCccccc
Confidence 68999999998873 3445 899999999986544
No 332
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.56 E-value=6.4 Score=29.69 Aligned_cols=73 Identities=19% Similarity=0.009 Sum_probs=48.5
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..++ +.|++|+.++.+++..+.+.+.+...+ .++.++.+|+.+.. ...
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 566766665 455555544 458899999999887766655554443 36788888887642 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.+.-.
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 57999988654
No 333
>KOG1331|consensus
Probab=87.56 E-value=0.34 Score=37.84 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=52.9
Q ss_pred HhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCce-EEEeCCcccCC-CCCCccEEEEC
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKI-QFIQGDFFALA-PSLQGDVVFLS 136 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~-~~~~~D~v~~n 136 (189)
.....+..++|.|||.|-....- -...++|.|++...+..++.. +. ....+|+...+ +..+||.++.=
T Consensus 41 ~~~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 41 DSQPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred hccCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCccccchhh
Confidence 34455889999999999755321 134688999999888776432 23 67888998887 66789988775
Q ss_pred CCCCCCc
Q psy13204 137 PPWGGPE 143 (189)
Q Consensus 137 pp~~~~~ 143 (189)
..-++..
T Consensus 111 avihhls 117 (293)
T KOG1331|consen 111 AVIHHLS 117 (293)
T ss_pred hhhhhhh
Confidence 5555543
No 334
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.45 E-value=2.7 Score=34.51 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=36.5
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 105 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (189)
.+.++++|+-|++|.....-.+.+.-.+|++||+||.-....+-+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 4666899999998877777777777789999999998776665443
No 335
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.31 E-value=3.5 Score=27.83 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCCCEEEEecCCCCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--CCC
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--SLQ 129 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~ 129 (189)
++..++.... ..+|+++|.|-=. .+-.++++|..++++|+++. +++ . .+++...|..+.-. -..
T Consensus 4 ~a~~iAre~~-~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~----g~~~v~DDitnP~~~iY~~ 70 (129)
T COG1255 4 VAEYIARENA-RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-E----GLRFVVDDITNPNISIYEG 70 (129)
T ss_pred HHHHHHHHhc-CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-c----cceEEEccCCCccHHHhhC
Confidence 3444554444 4489999887544 34455666999999999986 222 2 56889999877531 124
Q ss_pred ccEEEE
Q psy13204 130 GDVVFL 135 (189)
Q Consensus 130 ~D~v~~ 135 (189)
.|+|++
T Consensus 71 A~lIYS 76 (129)
T COG1255 71 ADLIYS 76 (129)
T ss_pred ccceee
Confidence 677776
No 336
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.23 E-value=7.6 Score=29.35 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=49.0
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..++ +.|++|+.++.+++.++.........+. ++.++.+|..+.. ...
T Consensus 11 ~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 66777666 4555555554 4589999999998777665555544443 5778888876532 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+.-..
T Consensus 88 ~id~vi~~ag~~ 99 (256)
T PRK06124 88 RLDILVNNVGAR 99 (256)
T ss_pred CCCEEEECCCCC
Confidence 578999886543
No 337
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.13 E-value=8.2 Score=29.56 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=46.3
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~ 129 (189)
+++++=.|++ |+++..+ ++.|++|+.++.+++..+.+.+......- .++.++.+|+.+.. ....
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESN-VDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 5666655544 4444444 44599999999998877666555433211 26778888877643 1135
Q ss_pred ccEEEECCC
Q psy13204 130 GDVVFLSPP 138 (189)
Q Consensus 130 ~D~v~~npp 138 (189)
.|+++.|.-
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 899888753
No 338
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.99 E-value=2.4 Score=35.30 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=43.8
Q ss_pred CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVF 134 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~ 134 (189)
..+++=+|+ |.++..+++. +..++.+|.+++.++.+++.. ..+.++.+|..+.. .-..+|.++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 456655555 6666665543 789999999999887765542 25678888876542 223577777
Q ss_pred ECCC
Q psy13204 135 LSPP 138 (189)
Q Consensus 135 ~npp 138 (189)
+-.+
T Consensus 303 ~~~~ 306 (453)
T PRK09496 303 ALTN 306 (453)
T ss_pred ECCC
Confidence 6444
No 339
>PRK07102 short chain dehydrogenase; Provisional
Probab=86.77 E-value=5.2 Score=30.03 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=46.5
Q ss_pred EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC--------CCCccEE
Q psy13204 66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP--------SLQGDVV 133 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v 133 (189)
+++=.| |+|+++..+++ .|.+|++++.+++..+...++....+- .++.++.+|..+... ...+|++
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 455444 56776666554 488999999998766554444433322 378889999876531 1246999
Q ss_pred EECCCC
Q psy13204 134 FLSPPW 139 (189)
Q Consensus 134 ~~npp~ 139 (189)
+.+...
T Consensus 81 v~~ag~ 86 (243)
T PRK07102 81 LIAVGT 86 (243)
T ss_pred EECCcC
Confidence 987654
No 340
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.35 E-value=8.9 Score=29.19 Aligned_cols=75 Identities=12% Similarity=-0.047 Sum_probs=47.5
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..+ ++.|++|+.++.+++.++.+.+.........++.++..|+.+.. ...
T Consensus 8 ~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 5667766654 4444444 44589999999998877666555543321125677788876643 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 58999988654
No 341
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.17 E-value=9.8 Score=28.70 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|++|++++.+++.++.........+ .++.++.+|+.+.. ...
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56666666 55666666554 48899999999887766655544333 25778888876532 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.+...
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 57999987654
No 342
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.96 E-value=1.2 Score=35.97 Aligned_cols=44 Identities=30% Similarity=0.296 Sum_probs=34.1
Q ss_pred CCCCCEEEEecCC-CChHHHHHHH-hCCeEEEEeCCHHHHHHHHHH
Q psy13204 61 CKASDVVIDGFCG-CGGNTIQFAA-VCQKVISIDIDPAKLRLAQHN 104 (189)
Q Consensus 61 ~~~~~~vlD~g~G-~G~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~ 104 (189)
.+++++|+=.|+| .|.+++.+++ .|++|+++|.+++-.+.|++-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 4458887766665 5668888887 499999999999988887654
No 343
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.85 E-value=2.3 Score=36.72 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=39.2
Q ss_pred CCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204 72 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 135 (189)
Q Consensus 72 ~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 135 (189)
||.|..+..+++ ++..++.+|.|++.++.+++ . ....+++|..+.. .-.+.|.++.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 555666666655 37889999999998877653 2 4688999988753 2246786665
No 344
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.65 E-value=3.4 Score=31.27 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=37.5
Q ss_pred CCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204 73 GCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 135 (189)
Q Consensus 73 G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 135 (189)
|.|.++..+++ .|..|+.+|.+++.++.....- .....+++|..+.. .-..+|+++.
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 45555555544 4889999999999887733211 15678888877643 2246777766
No 345
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.59 E-value=11 Score=28.70 Aligned_cols=74 Identities=11% Similarity=-0.074 Sum_probs=47.3
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV 132 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~ 132 (189)
+++++=.|+ +|+++..+ ++.|++|++++.+++..+.+...+....- .++.++..|..+.. .....|+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 556666664 44455444 44588999999998877666555543321 25777888876532 1246899
Q ss_pred EEECCCC
Q psy13204 133 VFLSPPW 139 (189)
Q Consensus 133 v~~npp~ 139 (189)
++.|+-.
T Consensus 85 lv~~ag~ 91 (259)
T PRK06125 85 LVNNAGA 91 (259)
T ss_pred EEECCCC
Confidence 9988644
No 346
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.59 E-value=12 Score=27.96 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=48.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++=.| |+|+++..+++ .|.+|+.++.++...+.........+ .++.++..|..+.. ...
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45565566 56777766654 48899999998876655544444333 36788888876543 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+....
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 689999886543
No 347
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.39 E-value=10 Score=28.92 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=49.1
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
+++++=.|++.|. .+..++..|++|+.++.+++.++.+.......+. ++.++.+|+.+.. ....
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5566666655433 2333445589999999998877766666654443 6788888887643 1135
Q ss_pred ccEEEECCCCC
Q psy13204 130 GDVVFLSPPWG 140 (189)
Q Consensus 130 ~D~v~~npp~~ 140 (189)
+|+++.+.-..
T Consensus 88 id~li~~ag~~ 98 (265)
T PRK07097 88 IDILVNNAGII 98 (265)
T ss_pred CCEEEECCCCC
Confidence 89999887654
No 348
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.17 E-value=12 Score=28.69 Aligned_cols=72 Identities=17% Similarity=0.031 Sum_probs=45.5
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..++ ..|++|+.++.+++..+.........+ .++.++..|..+.. ...
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56666665 4555555544 458899999998876655544444333 25677788876532 113
Q ss_pred CccEEEECCC
Q psy13204 129 QGDVVFLSPP 138 (189)
Q Consensus 129 ~~D~v~~npp 138 (189)
.+|+++.|.-
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 5799998763
No 349
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.13 E-value=1.1 Score=34.68 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhCCeEEEEeC
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAAVCQKVISIDI 93 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~ 93 (189)
.++.+.|+++|+|..+..+-++|..|++-|+
T Consensus 27 s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDl 57 (330)
T COG3392 27 SGKIFCDIFAGTGVVGRFFKKAGNKIIANDL 57 (330)
T ss_pred CCCeeeeeccCccHHHHHHHHhcchhhhchH
Confidence 3778999999999999999999988888775
No 350
>PRK08862 short chain dehydrogenase; Provisional
Probab=85.09 E-value=8.7 Score=28.85 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=46.9
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC-
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL- 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~- 128 (189)
+++++=.|++.|. .+..+++.|.+|+.+..+++.++.+.+.....+. .+.....|..+.. .-.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5667766666654 4444455699999999999888776666554443 4555666655432 113
Q ss_pred CccEEEECC
Q psy13204 129 QGDVVFLSP 137 (189)
Q Consensus 129 ~~D~v~~np 137 (189)
.+|+++.|.
T Consensus 83 ~iD~li~na 91 (227)
T PRK08862 83 APDVLVNNW 91 (227)
T ss_pred CCCEEEECC
Confidence 689999986
No 351
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.08 E-value=8.9 Score=30.72 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=49.4
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..++ +.|++|+.++.+++.++...+.+...+. ++.++..|..+.. ...
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 455664454 555555554 4589999999999888777666655553 6677778876532 124
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.|.-..
T Consensus 84 ~iD~lVnnAG~~ 95 (330)
T PRK06139 84 RIDVWVNNVGVG 95 (330)
T ss_pred CCCEEEECCCcC
Confidence 689999987543
No 352
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.98 E-value=6.6 Score=29.65 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=46.3
Q ss_pred CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204 65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 135 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 135 (189)
++++=.| |+|+++..+++ .|++|+++..++...+.........+. ++.++.+|..+.. .....|+++.
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 3455444 45666655543 488999999887766555544444443 5788888876643 1236899999
Q ss_pred CCCCC
Q psy13204 136 SPPWG 140 (189)
Q Consensus 136 npp~~ 140 (189)
|.-+.
T Consensus 80 ~ag~~ 84 (257)
T PRK09291 80 NAGIG 84 (257)
T ss_pred CCCcC
Confidence 86543
No 353
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.92 E-value=11 Score=28.16 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=47.2
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++=.| |+|+++..+++ .|.+|+.++.++..++.+.+.+...+ .++.++..|..+.. ...
T Consensus 5 ~~~~lItG-~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITG-GAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56677555 45665555544 48899999999877666555554433 36777888876532 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+|+.+.-.
T Consensus 82 ~id~vi~~ag~ 92 (253)
T PRK08217 82 QLNGLINNAGI 92 (253)
T ss_pred CCCEEEECCCc
Confidence 57999988653
No 354
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.88 E-value=11 Score=29.44 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=47.5
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..++ +.|.+|+.++.+++.++...+.....+. .+.++.+|..+.. ...
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 566665554 555555554 4489999999998877666555543332 5678888877632 123
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 68999987643
No 355
>PRK07035 short chain dehydrogenase; Provisional
Probab=84.82 E-value=11 Score=28.33 Aligned_cols=73 Identities=10% Similarity=-0.030 Sum_probs=46.0
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..+ ++.|++|+.++.+++..+...+.....+. +..++..|..+.. ...
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4555555544 5545444 44489999999998777666555544332 5677777876542 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.+...
T Consensus 85 ~id~li~~ag~ 95 (252)
T PRK07035 85 RLDILVNNAAA 95 (252)
T ss_pred CCCEEEECCCc
Confidence 58999987754
No 356
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.72 E-value=2.7 Score=36.72 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=39.3
Q ss_pred CCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204 72 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 135 (189)
Q Consensus 72 ~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 135 (189)
||-|.++..+++ .+.+++.+|.|++.++.+++ . ...++.+|+.+.. .-.+.|+++.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 566666666654 37899999999999887653 2 3578899987753 2235677666
No 357
>PRK08251 short chain dehydrogenase; Provisional
Probab=84.69 E-value=15 Score=27.59 Aligned_cols=74 Identities=9% Similarity=-0.091 Sum_probs=48.0
Q ss_pred CEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
++++=.| |+|+++..+++. |.+|+.++.+++..+..........-..++.+..+|..+.. ....
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555444 677777766554 88999999998877666555443221136788888887642 1135
Q ss_pred ccEEEECCCC
Q psy13204 130 GDVVFLSPPW 139 (189)
Q Consensus 130 ~D~v~~npp~ 139 (189)
.|+++.|.-.
T Consensus 82 id~vi~~ag~ 91 (248)
T PRK08251 82 LDRVIVNAGI 91 (248)
T ss_pred CCEEEECCCc
Confidence 7999988644
No 358
>PRK07904 short chain dehydrogenase; Provisional
Probab=84.22 E-value=7.7 Score=29.55 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCChHHHHHHH----hC-CeEEEEeCCHHH-HHHHHHHHHHhCCCCceEEEeCCcccCC----------C
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAA----VC-QKVISIDIDPAK-LRLAQHNASVYGVSHKIQFIQGDFFALA----------P 126 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~----~~-~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~ 126 (189)
.+.+|+=.|+ +|+++..+++ .| .+|+.++.+++. ++.+.+.+...+. .++.++.+|..+.. .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 3566776666 5566665554 34 799999888764 5555455544432 36788888876532 1
Q ss_pred CCCccEEEECCCC
Q psy13204 127 SLQGDVVFLSPPW 139 (189)
Q Consensus 127 ~~~~D~v~~npp~ 139 (189)
....|+++.|...
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 1368988877544
No 359
>PRK06181 short chain dehydrogenase; Provisional
Probab=84.06 E-value=13 Score=28.15 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=44.7
Q ss_pred EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204 66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG 130 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~ 130 (189)
+++ +..|+|+++..+++ .|.+|++++.++...+...+.....+ .++.+..+|..+.. .....
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455 34466666666644 48899999999876665555444333 36778888876642 11257
Q ss_pred cEEEECC
Q psy13204 131 DVVFLSP 137 (189)
Q Consensus 131 D~v~~np 137 (189)
|+++.+.
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 9998875
No 360
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=83.62 E-value=1.4 Score=34.27 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=23.0
Q ss_pred ceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204 113 KIQFIQGDFFALA-PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 113 ~~~~~~~d~~~~~-~~~~~D~v~~npp~~~ 141 (189)
++++.+.|+.+.. ....-|+|++||||..
T Consensus 155 ~v~i~~~Df~~~i~~~~~~dfvYlDPPY~~ 184 (266)
T TIGR00571 155 NTTFLCGSFEKILAMVDDDSFVYCDPPYLP 184 (266)
T ss_pred CCEEEECCHHHHHhhcCCCCEEEECCCCCC
Confidence 7899999998876 2345579999999964
No 361
>PRK08303 short chain dehydrogenase; Provisional
Probab=83.61 E-value=9.9 Score=30.04 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=43.1
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCH----------HHHHHHHHHHHHhCCCCceEEEeCCcccCC----
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDP----------AKLRLAQHNASVYGVSHKIQFIQGDFFALA---- 125 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~----------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---- 125 (189)
+++++=.|++. +++.++++ .|++|+.++.+. +.++.+.+.+...+ .++.++.+|+.+..
T Consensus 8 ~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 8 GKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHH
Confidence 56777777554 45555544 488998888763 23333333343333 25667888877643
Q ss_pred -------CCCCccEEEECC
Q psy13204 126 -------PSLQGDVVFLSP 137 (189)
Q Consensus 126 -------~~~~~D~v~~np 137 (189)
.....|+++.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 113689999987
No 362
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=83.48 E-value=14 Score=28.34 Aligned_cols=73 Identities=14% Similarity=-0.001 Sum_probs=46.4
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..++ +.|.+|+.++.+++..+...+.+...+. ++.++.+|..+.. .-.
T Consensus 10 ~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 10 GKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG--EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 455655554 455555444 4489999999988776655555543332 6778888876542 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.|...
T Consensus 87 ~id~li~~ag~ 97 (278)
T PRK08277 87 PCDILINGAGG 97 (278)
T ss_pred CCCEEEECCCC
Confidence 68999988654
No 363
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=83.25 E-value=13 Score=27.87 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
++.++=.| |+|..+..+++ .|.+|+.++.++...+.+.......+ .++.++.+|..+.. ...
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34555555 45666666654 48899999999877766655554433 36788888876532 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+....
T Consensus 80 ~~d~vi~~ag~~ 91 (250)
T TIGR03206 80 PVDVLVNNAGWD 91 (250)
T ss_pred CCCEEEECCCCC
Confidence 579999887654
No 364
>PRK08589 short chain dehydrogenase; Validated
Probab=83.07 E-value=13 Score=28.60 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
++++|=.|+ +|+++..++ +.|++|+.++.+ +..+...+.+...+ .++.++..|+.+.. ...
T Consensus 6 ~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 455654454 455555544 458999999998 44444444443333 25777888876542 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|.-..
T Consensus 82 ~id~li~~Ag~~ 93 (272)
T PRK08589 82 RVDVLFNNAGVD 93 (272)
T ss_pred CcCEEEECCCCC
Confidence 589999987553
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=82.79 E-value=1.8 Score=31.76 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=17.7
Q ss_pred HHHHHHHhCCeEEEEeCCHHHHHHHH
Q psy13204 77 NTIQFAAVCQKVISIDIDPAKLRLAQ 102 (189)
Q Consensus 77 ~~~~~~~~~~~v~~vD~~~~~~~~a~ 102 (189)
.+..+|+.|.+|+|+|++++.++..+
T Consensus 15 ~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 15 LAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp HHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred HHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 34444666999999999999776654
No 366
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=82.73 E-value=15 Score=27.72 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=48.1
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..+ ++.|.+++.++.+++..+.+.......+. ++.++..|+.+.. ...
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6677777754 4444444 44588999999888777665555443332 5677788877643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+.-..
T Consensus 88 ~~d~li~~ag~~ 99 (255)
T PRK06113 88 KVDILVNNAGGG 99 (255)
T ss_pred CCCEEEECCCCC
Confidence 579999887643
No 367
>PRK07791 short chain dehydrogenase; Provisional
Probab=82.68 E-value=13 Score=28.97 Aligned_cols=74 Identities=19% Similarity=0.011 Sum_probs=44.7
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCH---------HHHHHHHHHHHHhCCCCceEEEeCCcccCC-----
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDP---------AKLRLAQHNASVYGVSHKIQFIQGDFFALA----- 125 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~---------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----- 125 (189)
+++++=.|++. +++..+ ++.|++|+.++.+. +.++.+.+.+...+. ++.++..|+.+..
T Consensus 6 ~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 6 GRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHH
Confidence 56676666554 444444 44589998888764 444444444443332 5677778876632
Q ss_pred ------CCCCccEEEECCCCC
Q psy13204 126 ------PSLQGDVVFLSPPWG 140 (189)
Q Consensus 126 ------~~~~~D~v~~npp~~ 140 (189)
.....|+++.|.-..
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 124689999986543
No 368
>PRK09242 tropinone reductase; Provisional
Probab=82.51 E-value=18 Score=27.28 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=48.6
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..+ ++.|++|+.++.+++..+....+.....-..++.++.+|+.+.. ...
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5667766654 4444444 34489999999998877666655543311136778888876532 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+.-..
T Consensus 88 ~id~li~~ag~~ 99 (257)
T PRK09242 88 GLHILVNNAGGN 99 (257)
T ss_pred CCCEEEECCCCC
Confidence 689999887553
No 369
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.27 E-value=13 Score=28.28 Aligned_cols=73 Identities=8% Similarity=-0.108 Sum_probs=44.2
Q ss_pred CCEEEEecCCCC-hHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGCG-GNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~G-~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.|+++| +++.++++ .|++|+.++.++...+.+.+.....+ ...++.+|+.+.. ..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 678888887763 66555544 48999888888654332222222111 3346677766532 12
Q ss_pred CCccEEEECCCC
Q psy13204 128 LQGDVVFLSPPW 139 (189)
Q Consensus 128 ~~~D~v~~npp~ 139 (189)
...|+++.|.-+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 468999998754
No 370
>COG4889 Predicted helicase [General function prediction only]
Probab=82.23 E-value=2.8 Score=38.19 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.1
Q ss_pred CCEEEEecCCCChHHHHHHHh
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV 84 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~ 84 (189)
+-+|+|.+.|+|.|...+.+.
T Consensus 846 ~vhilDpFtGTGtFi~RlL~a 866 (1518)
T COG4889 846 SVHILDPFTGTGTFIVRLLSA 866 (1518)
T ss_pred CeeeecCCCCccHHHHHHHHH
Confidence 679999999999998887663
No 371
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.09 E-value=3.6 Score=36.13 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=40.4
Q ss_pred CEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEE
Q psy13204 65 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFL 135 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~ 135 (189)
.+|+=+|+| .++...+ +.+..++.+|.|++.++.+++ . ...++.+|..+.. .-.+.|++++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----c----CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 456555555 4444443 347899999999999888754 2 3578899987753 2236776665
No 372
>PRK06196 oxidoreductase; Provisional
Probab=82.03 E-value=14 Score=29.18 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=45.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++.++++ .|.+|++++.+++..+.+...+. .+.++.+|+.+.. ...
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 56666555 55666666655 48899999998876655433332 3677888877643 124
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|...
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68999998754
No 373
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.99 E-value=11 Score=28.81 Aligned_cols=71 Identities=11% Similarity=-0.067 Sum_probs=45.9
Q ss_pred EEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCcc
Q psy13204 67 VIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGD 131 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D 131 (189)
++=. .|+|+++..+++ .|.+|+.++.+++..+.+.......+ .++.++.+|+.+.. ....+|
T Consensus 3 vlVt-GasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 3 VMIT-GAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEe-cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4433 456666655544 48899999998877666555554443 26778888876532 113689
Q ss_pred EEEECCCCC
Q psy13204 132 VVFLSPPWG 140 (189)
Q Consensus 132 ~v~~npp~~ 140 (189)
+++.|....
T Consensus 80 ~lI~~ag~~ 88 (270)
T PRK05650 80 VIVNNAGVA 88 (270)
T ss_pred EEEECCCCC
Confidence 999886544
No 374
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.97 E-value=9.4 Score=28.59 Aligned_cols=72 Identities=14% Similarity=0.029 Sum_probs=46.0
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++=. .|+|+++..+++ +|.+|++++.++...+.....+.. + .++.++.+|+.+.. ...
T Consensus 5 ~~~vlIt-Gasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVT-GASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3445444 445555555544 488999999998766655444432 2 36788888877643 112
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+|+.+...
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 57999998755
No 375
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.89 E-value=16 Score=27.26 Aligned_cols=73 Identities=15% Similarity=0.026 Sum_probs=44.2
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------------C
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------------P 126 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------------~ 126 (189)
+++++=.|+ +|+++..+++ .|.+|+.++.++...+.....+...+. ....++..|..+.. .
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHH
Confidence 567777774 5665555544 488999999998776665555443332 23445555553311 0
Q ss_pred C-CCccEEEECCC
Q psy13204 127 S-LQGDVVFLSPP 138 (189)
Q Consensus 127 ~-~~~D~v~~npp 138 (189)
. ...|+++.+.-
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 1 35798888764
No 376
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.87 E-value=14 Score=27.69 Aligned_cols=73 Identities=16% Similarity=-0.014 Sum_probs=48.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|+++..+++ .|.+++.++.+++..+...+.....+ .++.+..+|+.+.. .-.
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45666 55566777777655 48899999988877666555544333 36788888887642 013
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.+.-.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68998887533
No 377
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=81.84 E-value=3.4 Score=32.13 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCC-CCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204 51 EKVAQHIASRCKA-SDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 100 (189)
Q Consensus 51 ~~~~~~~~~~~~~-~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~ 100 (189)
..+...+...++. ..+.+|++||+|...+.+.. ..++.-|++++.+..
T Consensus 12 ~~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 12 TSLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHHHhcCcccCEEEEecCCcchhheeecC--cEEEEecCCHHHHHH
Confidence 4567778888876 46899999999999886643 357778999987643
No 378
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.80 E-value=16 Score=29.27 Aligned_cols=73 Identities=14% Similarity=-0.046 Sum_probs=48.7
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..++ +.|++|+.++.+++.++...+.+...+. ++.++.+|+.+.. .-.
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 44555444 5556555554 4589999999998877766666655443 6778888876643 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.|.-.
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999988654
No 379
>PRK07454 short chain dehydrogenase; Provisional
Probab=81.79 E-value=18 Score=26.94 Aligned_cols=74 Identities=11% Similarity=-0.097 Sum_probs=48.0
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
.++++=.| |+|+++..+++ +|.+|+.++.+++..+...+.....+ .++.++.+|+.+.. ...
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 44566666 46666666554 48899999999876655544444332 36788889887643 013
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+.-..
T Consensus 83 ~id~lv~~ag~~ 94 (241)
T PRK07454 83 CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEECCCcc
Confidence 579999877543
No 380
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.44 E-value=19 Score=27.78 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=45.9
Q ss_pred EEEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCCccE
Q psy13204 66 VVIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQGDV 132 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~D~ 132 (189)
+++=.|+ |+++..+++. |.+|+.++.+++.++.+.+.+...+. ++.++.+|+.+.. ....+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4444443 4677766654 88999999988776655555443332 6777888876642 1135899
Q ss_pred EEECCCCC
Q psy13204 133 VFLSPPWG 140 (189)
Q Consensus 133 v~~npp~~ 140 (189)
++.|.-..
T Consensus 80 li~nAG~~ 87 (275)
T PRK06940 80 LVHTAGVS 87 (275)
T ss_pred EEECCCcC
Confidence 99987543
No 381
>PRK07677 short chain dehydrogenase; Provisional
Probab=80.79 E-value=15 Score=27.68 Aligned_cols=71 Identities=17% Similarity=0.039 Sum_probs=44.7
Q ss_pred CEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 65 DVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
++++=.|+ +|+++..+ ++.|.+|+.++.++...+.+...+...+ .++.++.+|..+.. ....
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45665555 44444444 4458999999999877666555554333 36778888876532 1136
Q ss_pred ccEEEECCC
Q psy13204 130 GDVVFLSPP 138 (189)
Q Consensus 130 ~D~v~~npp 138 (189)
.|+++.|.-
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 799998764
No 382
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.53 E-value=11 Score=28.39 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=50.0
Q ss_pred CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|.++..+++. |.+|++++.+++..+.........+. ++.++.+|..+.. ...
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34455 555677877777664 88999999998877666555544443 6788888877532 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+....
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 579999876543
No 383
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.41 E-value=14 Score=28.09 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..+ ++.|++|+.++.+++.++...... + .++.++.+|..+.. ...
T Consensus 6 ~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 6 GQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--DHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 556666664 45555544 445899999999987665543332 1 35677888876542 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|....
T Consensus 80 ~id~li~~ag~~ 91 (263)
T PRK06200 80 KLDCFVGNAGIW 91 (263)
T ss_pred CCCEEEECCCCc
Confidence 689999987653
No 384
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=80.32 E-value=13 Score=28.24 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=44.0
Q ss_pred EEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCcc
Q psy13204 67 VIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGD 131 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D 131 (189)
++=.|+ +|+++..++ +.|++|+.++.+++.++.+.+.+... .++.++..|..+.. .....|
T Consensus 3 vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 3 VLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred EEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 444443 455555544 45899999999988776665555432 25677888876532 124689
Q ss_pred EEEECCCC
Q psy13204 132 VVFLSPPW 139 (189)
Q Consensus 132 ~v~~npp~ 139 (189)
+++.|.-.
T Consensus 79 ~li~naG~ 86 (259)
T PRK08340 79 ALVWNAGN 86 (259)
T ss_pred EEEECCCC
Confidence 99988654
No 385
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.19 E-value=15 Score=27.75 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=43.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..+++ .|++|+.++.++. +.+.+.....+ .++.++..|..+.. ...
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 8 GKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 677776664 5555555544 4899988876542 22223333333 36778888877643 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|.-..
T Consensus 83 ~iD~lv~~ag~~ 94 (251)
T PRK12481 83 HIDILINNAGII 94 (251)
T ss_pred CCCEEEECCCcC
Confidence 689999987543
No 386
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=80.18 E-value=4.9 Score=32.82 Aligned_cols=43 Identities=33% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q psy13204 62 KASDVVIDGFCGC-GGNTIQFAAV-CQ-KVISIDIDPAKLRLAQHN 104 (189)
Q Consensus 62 ~~~~~vlD~g~G~-G~~~~~~~~~-~~-~v~~vD~~~~~~~~a~~~ 104 (189)
.++.+|+..|||. |..+..+++. |. ++++++.+++..+.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3478899999887 7777778776 65 599999999988887654
No 387
>PRK07024 short chain dehydrogenase; Provisional
Probab=80.01 E-value=9.9 Score=28.85 Aligned_cols=69 Identities=12% Similarity=-0.027 Sum_probs=43.2
Q ss_pred EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204 66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG 130 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~ 130 (189)
+++=.| |+|+++..+++ .|++|+.++.+++.++...+..... .++.++.+|+.+.. .....
T Consensus 4 ~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 4 KVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred EEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 344344 46666666544 4889999999987765544433211 26778888887632 12347
Q ss_pred cEEEECCC
Q psy13204 131 DVVFLSPP 138 (189)
Q Consensus 131 D~v~~npp 138 (189)
|+++.|.-
T Consensus 80 d~lv~~ag 87 (257)
T PRK07024 80 DVVIANAG 87 (257)
T ss_pred CEEEECCC
Confidence 99998864
No 388
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.01 E-value=5.8 Score=28.86 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=25.0
Q ss_pred EecCCCC--hHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204 69 DGFCGCG--GNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 106 (189)
Q Consensus 69 D~g~G~G--~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 106 (189)
=+|+|.= +++..++..|.+|+.+|.+++.++.+++.+.
T Consensus 4 ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~ 43 (180)
T PF02737_consen 4 VIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE 43 (180)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence 3555532 2444445669999999999999988776654
No 389
>KOG1562|consensus
Probab=79.94 E-value=3.4 Score=32.72 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=59.5
Q ss_pred hCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh--CCC-CceEEEeCCcccCC---CCCCcc
Q psy13204 60 RCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY--GVS-HKIQFIQGDFFALA---PSLQGD 131 (189)
Q Consensus 60 ~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~---~~~~~D 131 (189)
.+...+.|+=+|-|.|+.....+++ ..++.-+|++...++..++-.+.. |.. .++.+.-+|...+. ..+.||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 3444889999999999999888887 456788999998888877665433 332 36889999987766 567899
Q ss_pred EEEEC
Q psy13204 132 VVFLS 136 (189)
Q Consensus 132 ~v~~n 136 (189)
+|+.|
T Consensus 198 Vii~d 202 (337)
T KOG1562|consen 198 VIITD 202 (337)
T ss_pred EEEEe
Confidence 99986
No 390
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.78 E-value=4.9 Score=34.39 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204 64 SDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 64 ~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~ 103 (189)
+.+|+=+|||. |..++..++. |++|+++|.+++.++.+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 88999999995 5566666665 8899999999999888765
No 391
>KOG3201|consensus
Probab=79.71 E-value=2.2 Score=30.77 Aligned_cols=85 Identities=13% Similarity=0.044 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCC--CCEEEEecCCCChHH-HHHHHh--CCeEEEEeCCHHHHHHHHHHHHHhCCC--CceEEEeCCccc
Q psy13204 51 EKVAQHIASRCKA--SDVVIDGFCGCGGNT-IQFAAV--CQKVISIDIDPAKLRLAQHNASVYGVS--HKIQFIQGDFFA 123 (189)
Q Consensus 51 ~~~~~~~~~~~~~--~~~vlD~g~G~G~~~-~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~ 123 (189)
+.++..+++.-.. |.+|+++|.|--+++ +.+|.. ...|...|-++++++..++-...+... .++.+..-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 4445444433222 789999999954443 333333 567889999999998877665544221 122222222111
Q ss_pred CC---CCCCccEEEE
Q psy13204 124 LA---PSLQGDVVFL 135 (189)
Q Consensus 124 ~~---~~~~~D~v~~ 135 (189)
.- ...+||.|++
T Consensus 95 aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILA 109 (201)
T ss_pred hHHHHhhCcccEEEe
Confidence 11 3457999887
No 392
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.70 E-value=19 Score=27.25 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=50.1
Q ss_pred CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|.++..+++. |++|+.++.++...+.........+ .++.++.+|+.+.. ...
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56666665 567777776554 8899999999877766655554433 26778888887642 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+....
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 579999987643
No 393
>PRK06720 hypothetical protein; Provisional
Probab=79.55 E-value=20 Score=25.70 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
++.++=.|.+.|. .+..+++.|++|+.++.+++..+.+.+.....+. ...++..|..+.. .-..
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG--EALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5666666655433 3333445689999999988776655444443332 4566777765432 1235
Q ss_pred ccEEEECCCCC
Q psy13204 130 GDVVFLSPPWG 140 (189)
Q Consensus 130 ~D~v~~npp~~ 140 (189)
.|+++.|.-..
T Consensus 94 iDilVnnAG~~ 104 (169)
T PRK06720 94 IDMLFQNAGLY 104 (169)
T ss_pred CCEEEECCCcC
Confidence 89999986543
No 394
>PRK05599 hypothetical protein; Provisional
Probab=79.48 E-value=16 Score=27.58 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=45.3
Q ss_pred EEEecCCCChHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccE
Q psy13204 67 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDV 132 (189)
Q Consensus 67 vlD~g~G~G~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~ 132 (189)
++=.|+ +++++..+++. |.+|+.++.+++.++.+.+.+...+- ..+.++.+|+.+.. .....|+
T Consensus 3 vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 3 ILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred EEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 444444 44555555443 88899889888877766666554442 24677888877643 1236899
Q ss_pred EEECCCC
Q psy13204 133 VFLSPPW 139 (189)
Q Consensus 133 v~~npp~ 139 (189)
++.|+-.
T Consensus 81 lv~nag~ 87 (246)
T PRK05599 81 AVVAFGI 87 (246)
T ss_pred EEEecCc
Confidence 9988644
No 395
>PRK05855 short chain dehydrogenase; Validated
Probab=79.39 E-value=13 Score=31.82 Aligned_cols=73 Identities=16% Similarity=0.047 Sum_probs=49.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++ +..|+|+++..+++ .|.+|+.++.++...+.+.......+. ++.++.+|+.+.. ...
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 34555 45557777666654 488999999998777666555554443 6788888887643 123
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.|.-.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 58999998644
No 396
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.33 E-value=16 Score=27.12 Aligned_cols=70 Identities=19% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+..++=.| |+|.++..+++ .|.+|++++.++...+.....+... ..+.++.+|..+.. ...
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45666666 56666666654 4889999999987766555444322 36778888876532 112
Q ss_pred CccEEEECC
Q psy13204 129 QGDVVFLSP 137 (189)
Q Consensus 129 ~~D~v~~np 137 (189)
.+|+++.+.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 578888765
No 397
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=79.20 E-value=23 Score=26.68 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=47.8
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
++++|=.| |+|+++..+++ .|++|+..+.+++.++.........+. ++.++..|..+.. ...
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 55565555 55666655554 488999999998777666555544332 5677778876542 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+.-..
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 589999987543
No 398
>PRK07774 short chain dehydrogenase; Provisional
Probab=79.17 E-value=15 Score=27.46 Aligned_cols=74 Identities=16% Similarity=0.035 Sum_probs=47.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|.+|+.++.++...+.........+ .+..++..|..+.. ...
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45565444 66676666655 48999999998876655544443322 25667788877643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+....
T Consensus 83 ~id~vi~~ag~~ 94 (250)
T PRK07774 83 GIDYLVNNAAIY 94 (250)
T ss_pred CCCEEEECCCCc
Confidence 589999887653
No 399
>KOG1205|consensus
Probab=79.03 E-value=17 Score=28.68 Aligned_cols=80 Identities=15% Similarity=0.034 Sum_probs=58.8
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
+++|+=-||.+|. .+..++++|.+++-+-...+.++...+.++..+-..++.++.+|..+.. .-..
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~ 91 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGR 91 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCC
Confidence 7888888888876 5666677799888888878888777666655544335899999988754 2347
Q ss_pred ccEEEECCCCCCCc
Q psy13204 130 GDVVFLSPPWGGPE 143 (189)
Q Consensus 130 ~D~v~~npp~~~~~ 143 (189)
.|+++.|.=....+
T Consensus 92 vDvLVNNAG~~~~~ 105 (282)
T KOG1205|consen 92 VDVLVNNAGISLVG 105 (282)
T ss_pred CCEEEecCcccccc
Confidence 89999997776633
No 400
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=78.98 E-value=25 Score=26.51 Aligned_cols=75 Identities=11% Similarity=-0.105 Sum_probs=45.6
Q ss_pred CEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
++++=.| |+|.++..++ +.|++|+.++.++...+..........-..++.++.+|..+.. ....
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4555555 4555555544 4588999999988766555444332211125788888877532 1136
Q ss_pred ccEEEECCCCC
Q psy13204 130 GDVVFLSPPWG 140 (189)
Q Consensus 130 ~D~v~~npp~~ 140 (189)
.|+++.+.-..
T Consensus 82 id~vv~~ag~~ 92 (259)
T PRK12384 82 VDLLVYNAGIA 92 (259)
T ss_pred CCEEEECCCcC
Confidence 79999887543
No 401
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=78.66 E-value=19 Score=28.42 Aligned_cols=73 Identities=16% Similarity=0.005 Sum_probs=46.2
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|.+|+.++.+++..+.+...+...+ .++.++..|+.+.. ...
T Consensus 6 ~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 6 KGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45565444 55666666554 48899999988876655544443222 36778888876643 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 83 ~iD~li~nAg~ 93 (322)
T PRK07453 83 PLDALVCNAAV 93 (322)
T ss_pred CccEEEECCcc
Confidence 58999998653
No 402
>PRK08643 acetoin reductase; Validated
Probab=78.63 E-value=26 Score=26.40 Aligned_cols=73 Identities=18% Similarity=0.041 Sum_probs=47.0
Q ss_pred CEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
++++ +..|+|+++..+++ .|++|+.++.+++..+.....+...+ .++.++.+|+.+.. ....
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3444 33455666655544 48899999999877766655554433 26777888887642 1135
Q ss_pred ccEEEECCCCC
Q psy13204 130 GDVVFLSPPWG 140 (189)
Q Consensus 130 ~D~v~~npp~~ 140 (189)
.|+++.|....
T Consensus 80 id~vi~~ag~~ 90 (256)
T PRK08643 80 LNVVVNNAGVA 90 (256)
T ss_pred CCEEEECCCCC
Confidence 89999987543
No 403
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=78.61 E-value=25 Score=26.31 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=46.2
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------------C
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------------P 126 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------------~ 126 (189)
+++++=.| |+|.++..+++ .|++|++++.+++..+.....+...+. .++.++..|..... .
T Consensus 12 ~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 12 DRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 66666666 56666665544 488999999998777665555544433 35566666664221 1
Q ss_pred CCCccEEEECCC
Q psy13204 127 SLQGDVVFLSPP 138 (189)
Q Consensus 127 ~~~~D~v~~npp 138 (189)
....|.++.+.-
T Consensus 90 ~~~id~vi~~Ag 101 (247)
T PRK08945 90 FGRLDGVLHNAG 101 (247)
T ss_pred hCCCCEEEECCc
Confidence 136899988753
No 404
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=78.48 E-value=23 Score=26.53 Aligned_cols=67 Identities=15% Similarity=-0.024 Sum_probs=43.8
Q ss_pred CCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEECC
Q psy13204 73 GCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFLSP 137 (189)
Q Consensus 73 G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~np 137 (189)
|+|+++..+++ .|.+|+.++.++...+...+.+...+. ++.++.+|..+.. .....|+++.+.
T Consensus 8 ~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 85 (254)
T TIGR02415 8 GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNA 85 (254)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45666665544 488999999887766555444444332 6788888876532 113579999987
Q ss_pred CCCC
Q psy13204 138 PWGG 141 (189)
Q Consensus 138 p~~~ 141 (189)
....
T Consensus 86 g~~~ 89 (254)
T TIGR02415 86 GVAP 89 (254)
T ss_pred CcCC
Confidence 6543
No 405
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.47 E-value=1.7 Score=34.03 Aligned_cols=49 Identities=31% Similarity=0.394 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 100 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~ 100 (189)
..+...+.+.++.+...+|++||.|...+.+... .+.+.-|++++.+..
T Consensus 13 ~~l~~~i~~~lP~~~~y~EPF~GggaV~i~~~~~-~~~i~~Din~~Lvn~ 61 (274)
T COG0338 13 SKLLDQIIPHLPEGVSYIEPFVGGGAVFINLAAK-KKYILNDINPDLVNL 61 (274)
T ss_pred HHHHHHHHHhCCCCceeeCCccCcceeeeehhhh-hhhhHhcCCHHHHHH
Confidence 4577788888888669999999999998888775 667889999987643
No 406
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.46 E-value=14 Score=32.17 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=46.1
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHh-----CC--CCceEEEeCCcccCC----CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVY-----GV--SHKIQFIQGDFFALA----PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~-----~~--~~~~~~~~~d~~~~~----~~~ 128 (189)
+++|+= ..|+|+++..+++ .|.+|+++..+++..+.....+... +. ..++.++.+|+.+.. .-.
T Consensus 80 gKvVLV-TGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 80 EDLAFV-AGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 556654 4456777766654 4889999999887765544433221 11 125788999987643 123
Q ss_pred CccEEEECC
Q psy13204 129 QGDVVFLSP 137 (189)
Q Consensus 129 ~~D~v~~np 137 (189)
..|+||.+.
T Consensus 159 giDiVVn~A 167 (576)
T PLN03209 159 NASVVICCI 167 (576)
T ss_pred CCCEEEEcc
Confidence 579988874
No 407
>PRK05717 oxidoreductase; Validated
Probab=77.90 E-value=18 Score=27.35 Aligned_cols=71 Identities=18% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++= ..|+|+++..+++ .|++|+.++.++...+...+. .+ .++.++.+|+.+.. ...
T Consensus 10 ~k~vlI-tG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 10 GRVALV-TGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG--ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCEEEE-eCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 566664 4455666666554 488999999887544332221 12 35778888877642 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+....
T Consensus 84 ~id~li~~ag~~ 95 (255)
T PRK05717 84 RLDALVCNAAIA 95 (255)
T ss_pred CCCEEEECCCcc
Confidence 579999987654
No 408
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.89 E-value=15 Score=28.22 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=47.5
Q ss_pred CEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCCc
Q psy13204 65 DVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQG 130 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~ 130 (189)
+.++=.| |+|+++..++ +.|++|++++.+++..+...+.....+...++.++.+|..+.. .....
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 4455445 4555555554 4489999999888776665544444343346788888887642 11357
Q ss_pred cEEEECCCCCC
Q psy13204 131 DVVFLSPPWGG 141 (189)
Q Consensus 131 D~v~~npp~~~ 141 (189)
|+++.++-...
T Consensus 83 d~vv~~ag~~~ 93 (280)
T PRK06914 83 DLLVNNAGYAN 93 (280)
T ss_pred eEEEECCcccc
Confidence 99988865433
No 409
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=77.86 E-value=4.1 Score=31.09 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=18.0
Q ss_pred ceEEEeCCcccCC--CCCCccEEEECCCCCCCcccc
Q psy13204 113 KIQFIQGDFFALA--PSLQGDVVFLSPPWGGPEYAR 146 (189)
Q Consensus 113 ~~~~~~~d~~~~~--~~~~~D~v~~npp~~~~~~~~ 146 (189)
++.+.+.|..+.. ....-|+|++||||...++..
T Consensus 159 ~~~i~~~d~~~~~~~~~~~~d~vYlDPPY~~~~~~~ 194 (260)
T PF02086_consen 159 NVEIENRDFDEVIERYDSPNDFVYLDPPYYSTQYSR 194 (260)
T ss_dssp HEEEEEC-CHGGGTT--TTE-EEEE--S-TT-----
T ss_pred CceeEehhHHHHHhhccCCCeEEEEcCccccccCcC
Confidence 4788999988775 234678999999998744333
No 410
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.24 E-value=4.9 Score=31.22 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=38.6
Q ss_pred CCCCCEEEEecCCCChHHHHHHHhC-------CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC
Q psy13204 61 CKASDVVIDGFCGCGGNTIQFAAVC-------QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125 (189)
Q Consensus 61 ~~~~~~vlD~g~G~G~~~~~~~~~~-------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 125 (189)
+.+...++|+|||.|.++.++++.- ..++.||....-. .+............+.=+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 3447789999999999999998862 3678899754222 22222222221014455555665543
No 411
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.20 E-value=19 Score=27.45 Aligned_cols=70 Identities=21% Similarity=0.108 Sum_probs=43.8
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..++ +.|++|+.++.+++..+...... + .++.++.+|..+.. ...
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45666555 4555555554 44899999999876554433222 2 36778888887642 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 57999988654
No 412
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=76.92 E-value=15 Score=28.95 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=43.5
Q ss_pred CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~ 135 (189)
+++|+=.| |+|.++..+++. |++|+++..++...+.........+...+++++.+|+.+... -...|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 45666554 677777776653 888887766654433222222212222367888899877531 124788888
Q ss_pred CCC
Q psy13204 136 SPP 138 (189)
Q Consensus 136 npp 138 (189)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
No 413
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.62 E-value=18 Score=27.44 Aligned_cols=72 Identities=8% Similarity=-0.098 Sum_probs=43.6
Q ss_pred CCEEEEecCCC-ChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGC-GGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~-G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.|+++ ++++..++ +.|++|+..+.+....+.+.+. .+ ..+.++..|+.+.. ..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD--EEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc--CceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 67777777663 45555554 4589998888774332222211 11 25677888886542 12
Q ss_pred CCccEEEECCCCC
Q psy13204 128 LQGDVVFLSPPWG 140 (189)
Q Consensus 128 ~~~D~v~~npp~~ 140 (189)
..+|+++.|.-+.
T Consensus 82 g~iD~lv~nAg~~ 94 (252)
T PRK06079 82 GKIDGIVHAIAYA 94 (252)
T ss_pred CCCCEEEEccccc
Confidence 4689999987554
No 414
>PLN02780 ketoreductase/ oxidoreductase
Probab=76.56 E-value=19 Score=28.71 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=45.5
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++=.|++ |+++.++ +++|.+|+.++.+++.++...+.+....-..++..+..|..+.. ...
T Consensus 53 g~~~lITGAs-~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 53 GSWALVTGPT-DGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 6777766654 4444444 45589999999999888776666543311125566666655311 112
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 132 didilVnnAG~ 142 (320)
T PLN02780 132 DVGVLINNVGV 142 (320)
T ss_pred CccEEEEecCc
Confidence 35588888654
No 415
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.23 E-value=19 Score=26.72 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=47.1
Q ss_pred CEEEEecCCCChHHHHHHH----hCCeEEEE-eCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAA----VCQKVISI-DIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~----~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
++++=.| |+|.++..+++ .|.+++.+ +.+++..+.........+ .++.++..|+.+.. ...
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3444444 56776666644 48899888 888876665555544333 36788888887643 012
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.++...
T Consensus 83 ~id~vi~~ag~~ 94 (247)
T PRK05565 83 KIDILVNNAGIS 94 (247)
T ss_pred CCCEEEECCCcC
Confidence 589999987654
No 416
>PRK07814 short chain dehydrogenase; Provisional
Probab=76.10 E-value=27 Score=26.54 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=46.9
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC-----------CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP-----------SL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~ 128 (189)
+++++=.| |+|+++..+++ +|++|+.++.+++..+.........+ ..+.++..|..+... ..
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 55666555 56666666554 48999999999877665555544333 357778888765431 13
Q ss_pred CccEEEECCC
Q psy13204 129 QGDVVFLSPP 138 (189)
Q Consensus 129 ~~D~v~~npp 138 (189)
.+|+++.+.-
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6799988764
No 417
>PRK10904 DNA adenine methylase; Provisional
Probab=75.84 E-value=3.5 Score=32.17 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=22.9
Q ss_pred ceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204 113 KIQFIQGDFFALA-PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 113 ~~~~~~~d~~~~~-~~~~~D~v~~npp~~~ 141 (189)
++++.+.|..+.. ....-|.|++||||-.
T Consensus 157 ~v~i~~~Df~~~i~~~~~~~fvYlDPPY~~ 186 (271)
T PRK10904 157 NAFFYCESYADSMARADKGSVVYCDPPYAP 186 (271)
T ss_pred CCEEEECCHHHHHhhcCCCcEEEECCCCCC
Confidence 6899999998876 2235679999999954
No 418
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=75.70 E-value=20 Score=24.94 Aligned_cols=70 Identities=16% Similarity=0.004 Sum_probs=46.4
Q ss_pred ecCCCChHHHHHHHh----CC-eEEEEeCC--HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCcc
Q psy13204 70 GFCGCGGNTIQFAAV----CQ-KVISIDID--PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGD 131 (189)
Q Consensus 70 ~g~G~G~~~~~~~~~----~~-~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D 131 (189)
+..|+|+++..++++ |. .|+.+..+ .+..+.....++..+ .++.++..|..+.. .....|
T Consensus 5 ItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld 82 (167)
T PF00106_consen 5 ITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFGPLD 82 (167)
T ss_dssp EETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHSSES
T ss_pred EECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 344556666666554 44 67888888 555665555555555 48899999976642 234799
Q ss_pred EEEECCCCCC
Q psy13204 132 VVFLSPPWGG 141 (189)
Q Consensus 132 ~v~~npp~~~ 141 (189)
+++.|.....
T Consensus 83 ~li~~ag~~~ 92 (167)
T PF00106_consen 83 ILINNAGIFS 92 (167)
T ss_dssp EEEEECSCTT
T ss_pred cccccccccc
Confidence 9999877665
No 419
>KOG2356|consensus
Probab=75.66 E-value=1.5 Score=34.53 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=22.6
Q ss_pred CceEEEeCCcccCC-----CCCCccEEEECCCCCCCc
Q psy13204 112 HKIQFIQGDFFALA-----PSLQGDVVFLSPPWGGPE 143 (189)
Q Consensus 112 ~~~~~~~~d~~~~~-----~~~~~D~v~~npp~~~~~ 143 (189)
.+-.|..+|+.+.. ....+|+|++||||.-.+
T Consensus 162 pkSsF~~gDv~~~~qll~~H~llpdlIIiDPPW~NKS 198 (366)
T KOG2356|consen 162 PKSSFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNKS 198 (366)
T ss_pred CccceecccHHHHHHHhHHHhhcCCeEEeCCCCCCcc
Confidence 35578888776653 223569999999998644
No 420
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.58 E-value=12 Score=31.18 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----CCCCccEEEEC
Q psy13204 72 CGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----PSLQGDVVFLS 136 (189)
Q Consensus 72 ~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~n 136 (189)
||.|.++..+++. |.+++.+|.+++.++.+++. ..+.++.+|..+.. .-..+|.+++-
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 4557877777663 78999999999887765432 14567777776532 12356766663
No 421
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=75.51 E-value=3.8 Score=31.75 Aligned_cols=43 Identities=9% Similarity=-0.013 Sum_probs=29.9
Q ss_pred CCEEEEecCCCChHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNAS 106 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~ 106 (189)
|.++||+|||.-..-...+ ....+++..|..+...+..+++++
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 7799999999866533333 336679999999988887766654
No 422
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=75.32 E-value=12 Score=29.61 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=42.5
Q ss_pred ecCCCChHHHHHHHh----C-CeEEEEeCCHHHHHHHHHHHHHhCCCCce----EEEeCCcccCC------CCCCccEEE
Q psy13204 70 GFCGCGGNTIQFAAV----C-QKVISIDIDPAKLRLAQHNASVYGVSHKI----QFIQGDFFALA------PSLQGDVVF 134 (189)
Q Consensus 70 ~g~G~G~~~~~~~~~----~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~----~~~~~d~~~~~------~~~~~D~v~ 134 (189)
+..|+|.++.++.++ + .+++.+|.++..+-..++.+....-..++ ..+.+|..+.. ....+|+|+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 467889999999876 2 57999999999887777776432211233 44588887643 344789998
Q ss_pred ECCCCCC
Q psy13204 135 LSPPWGG 141 (189)
Q Consensus 135 ~npp~~~ 141 (189)
--.-+-+
T Consensus 83 HaAA~Kh 89 (293)
T PF02719_consen 83 HAAALKH 89 (293)
T ss_dssp E------
T ss_pred EChhcCC
Confidence 7444443
No 423
>PRK07832 short chain dehydrogenase; Provisional
Probab=75.29 E-value=22 Score=27.21 Aligned_cols=68 Identities=16% Similarity=-0.009 Sum_probs=41.2
Q ss_pred cCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEE
Q psy13204 71 FCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFL 135 (189)
Q Consensus 71 g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~ 135 (189)
..|+|+++..+++ .|++|+.++.+++..+.....+...+- ..+.++.+|..+.. .....|+++.
T Consensus 6 tGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 84 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMN 84 (272)
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3445666665544 488999999988776665555443332 13445667765422 1235799998
Q ss_pred CCCC
Q psy13204 136 SPPW 139 (189)
Q Consensus 136 npp~ 139 (189)
+.-.
T Consensus 85 ~ag~ 88 (272)
T PRK07832 85 IAGI 88 (272)
T ss_pred CCCC
Confidence 8643
No 424
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.08 E-value=4.3 Score=27.20 Aligned_cols=31 Identities=42% Similarity=0.486 Sum_probs=25.4
Q ss_pred CCChHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q psy13204 73 GCGGNTIQFAAV-CQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 73 G~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~~ 103 (189)
|.|.+++.+++. |.+|+++|.+++..+.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 457788888876 8999999999998887654
No 425
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.02 E-value=27 Score=25.82 Aligned_cols=74 Identities=12% Similarity=-0.036 Sum_probs=47.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~ 128 (189)
+.+++ +..|+|..+..+++ +|.+|++++.++...+.........+. ++.++.+|+.+.. . -.
T Consensus 5 ~~~il-ItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTAL-VTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG--EARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 34566 44457777777654 488999999998776655444443332 6778888876532 0 12
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|.++.+.-..
T Consensus 82 ~id~vi~~ag~~ 93 (246)
T PRK05653 82 ALDILVNNAGIT 93 (246)
T ss_pred CCCEEEECCCcC
Confidence 468888876443
No 426
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.90 E-value=34 Score=26.42 Aligned_cols=74 Identities=9% Similarity=-0.091 Sum_probs=43.6
Q ss_pred CCEEEEecCCC-ChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGC-GGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~-G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.|+++ ++++.+++ +.|++|+..+.+....+.+.+.....+. . ..+..|+.+.. ..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 56777777652 45555554 4589999888885432333222222232 3 46677877643 12
Q ss_pred CCccEEEECCCCC
Q psy13204 128 LQGDVVFLSPPWG 140 (189)
Q Consensus 128 ~~~D~v~~npp~~ 140 (189)
..+|+++.|.-..
T Consensus 82 g~iDilVnnAG~~ 94 (274)
T PRK08415 82 GKIDFIVHSVAFA 94 (274)
T ss_pred CCCCEEEECCccC
Confidence 4689999987653
No 427
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.63 E-value=17 Score=27.66 Aligned_cols=72 Identities=8% Similarity=-0.110 Sum_probs=44.7
Q ss_pred CCEEEEecCC-CChHHHHHHH----hCCeEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------
Q psy13204 64 SDVVIDGFCG-CGGNTIQFAA----VCQKVISIDIDP--AKLRLAQHNASVYGVSHKIQFIQGDFFALA----------- 125 (189)
Q Consensus 64 ~~~vlD~g~G-~G~~~~~~~~----~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------- 125 (189)
+++++=.|+| +++++.++++ .|++|+..+.++ +..+...+.. + .++.++..|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 6778888875 5666666655 488998887653 3333322221 1 24567778876642
Q ss_pred CCCCccEEEECCCCC
Q psy13204 126 PSLQGDVVFLSPPWG 140 (189)
Q Consensus 126 ~~~~~D~v~~npp~~ 140 (189)
....+|+++.|.-..
T Consensus 82 ~~g~iD~li~nAG~~ 96 (256)
T PRK07889 82 HVDGLDGVVHSIGFA 96 (256)
T ss_pred HcCCCcEEEEccccc
Confidence 124689999987543
No 428
>PRK06182 short chain dehydrogenase; Validated
Probab=74.58 E-value=25 Score=26.85 Aligned_cols=69 Identities=14% Similarity=-0.003 Sum_probs=43.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|.+|++++.+++.++... . ..+.++.+|..+.. ...
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 34565444 55666666654 3889999999887654321 1 14567778876642 123
Q ss_pred CccEEEECCCCCC
Q psy13204 129 QGDVVFLSPPWGG 141 (189)
Q Consensus 129 ~~D~v~~npp~~~ 141 (189)
..|+++.|.....
T Consensus 74 ~id~li~~ag~~~ 86 (273)
T PRK06182 74 RIDVLVNNAGYGS 86 (273)
T ss_pred CCCEEEECCCcCC
Confidence 6899999876653
No 429
>PRK09186 flagellin modification protein A; Provisional
Probab=74.49 E-value=30 Score=25.97 Aligned_cols=73 Identities=15% Similarity=-0.001 Sum_probs=44.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~ 128 (189)
+++++=.|+ +|+++..+++ .|++|+.+..+++..+.+...+........+.++.+|+.+.. . -.
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 455555554 4555555544 488999999988777666555432211124567788877642 1 12
Q ss_pred CccEEEECC
Q psy13204 129 QGDVVFLSP 137 (189)
Q Consensus 129 ~~D~v~~np 137 (189)
..|+++.|.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479999886
No 430
>PRK06138 short chain dehydrogenase; Provisional
Probab=74.37 E-value=24 Score=26.35 Aligned_cols=73 Identities=19% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|.++..+++ .|++|+++..+++..+....... .+ .++.++.+|+.+.. ...
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 445554554 5665555544 48899999988876655544443 22 36788888887643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+....
T Consensus 81 ~id~vi~~ag~~ 92 (252)
T PRK06138 81 RLDVLVNNAGFG 92 (252)
T ss_pred CCCEEEECCCCC
Confidence 689999876654
No 431
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.29 E-value=26 Score=27.35 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|++|+.++.+++.++...+.... + ..+..+.+|+.+.. ...
T Consensus 9 gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 9 GKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D--DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56676555 45555555544 489999999998776654443321 1 24555557776532 114
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.|.-..
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 689999987543
No 432
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=74.05 E-value=31 Score=27.26 Aligned_cols=73 Identities=18% Similarity=0.023 Sum_probs=44.5
Q ss_pred CCEEEEecCCCChHHHHHH----HhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.| |+++++..++ +.| .+|+.+..+++..+.+.+.+...+ .++.++..|+.+.. ..
T Consensus 3 ~k~vlITG-as~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 3 KPTVIITG-ASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK--DSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 34555555 4455555544 448 899998888876655544433222 25677778876542 12
Q ss_pred CCccEEEECCCC
Q psy13204 128 LQGDVVFLSPPW 139 (189)
Q Consensus 128 ~~~D~v~~npp~ 139 (189)
...|+++.|.-.
T Consensus 80 ~~iD~lI~nAG~ 91 (314)
T TIGR01289 80 RPLDALVCNAAV 91 (314)
T ss_pred CCCCEEEECCCc
Confidence 368999998754
No 433
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=73.91 E-value=2.5 Score=30.65 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=12.8
Q ss_pred ccEEEECCCCCCCcc
Q psy13204 130 GDVVFLSPPWGGPEY 144 (189)
Q Consensus 130 ~D~v~~npp~~~~~~ 144 (189)
||+|++|||+.-...
T Consensus 1 fdvI~~DPPW~~~~~ 15 (176)
T PF05063_consen 1 FDVIYADPPWPNKSA 15 (176)
T ss_pred CCEEEEeCCCCCcCc
Confidence 799999999987653
No 434
>PRK10904 DNA adenine methylase; Provisional
Probab=73.83 E-value=6.8 Score=30.54 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHhCCeEEEEeCCHHHHHH
Q psy13204 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRL 100 (189)
Q Consensus 51 ~~~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~ 100 (189)
..+...+...++...+.+|++||.|...+.... .+++.-|++++.+..
T Consensus 15 ~~l~~~i~~~~P~~~~yvEPF~GggaV~l~~~~--~~~ilND~n~~Lin~ 62 (271)
T PRK10904 15 YPLLDDIKRHLPKGECLIEPFVGAGSVFLNTDF--SRYILADINSDLISL 62 (271)
T ss_pred HHHHHHHHHhCCCCCcEEeccCCcceeeEecCC--CeEEEEeCCHHHHHH
Confidence 456777888887667899999999998876532 456778999987643
No 435
>KOG3350|consensus
Probab=73.50 E-value=29 Score=25.52 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh-----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC--
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV-----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-- 125 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 125 (189)
++...++....+.+|--+-|-+=. +.-..+ .-+|+-+|.+...-.+ | -+|+.=|.-...
T Consensus 63 La~e~v~~s~e~~rIacvS~Psly--~y~k~re~~~~~~~v~lfEfDkRFe~y--------g----~eFvfYDyN~p~dl 128 (217)
T KOG3350|consen 63 LAAERVEASGEGSRIACVSCPSLY--VYQKKREIEIPHDQVYLFEFDKRFELY--------G----TEFVFYDYNCPLDL 128 (217)
T ss_pred HHHHHHhhcccCceEEEEeCchHH--hhhhhhhccCCceeEEEEEehhhHHhc--------c----ceeEEeccCCCCCC
Confidence 333333333436556555554322 111111 2367888887643322 2 244444433322
Q ss_pred C---CCCccEEEECCCCCCCcc
Q psy13204 126 P---SLQGDVVFLSPPWGGPEY 144 (189)
Q Consensus 126 ~---~~~~D~v~~npp~~~~~~ 144 (189)
| ...||+|+.||||-..+-
T Consensus 129 p~~lk~~fdiivaDPPfL~~eC 150 (217)
T KOG3350|consen 129 PDELKAHFDIIVADPPFLSEEC 150 (217)
T ss_pred HHHHHhcccEEEeCCccccchh
Confidence 1 136999999999987663
No 436
>KOG0725|consensus
Probab=73.50 E-value=41 Score=26.20 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=56.6
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEeCCcccCC-----------C-C
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS-HKIQFIQGDFFALA-----------P-S 127 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----------~-~ 127 (189)
++++|=-|.++|. .+..+++.|++|+..+.+++.++.........+.. .++..+.+|..+.. . .
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~ 87 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKFF 87 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHhC
Confidence 6677777776664 55667778999999999999988877766655542 35788888886542 2 3
Q ss_pred CCccEEEECCCCCC
Q psy13204 128 LQGDVVFLSPPWGG 141 (189)
Q Consensus 128 ~~~D~v~~npp~~~ 141 (189)
.+.|+++.|+--..
T Consensus 88 GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 88 GKIDILVNNAGALG 101 (270)
T ss_pred CCCCEEEEcCCcCC
Confidence 57899998865554
No 437
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=72.96 E-value=24 Score=26.42 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=44.1
Q ss_pred cCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEE
Q psy13204 71 FCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFL 135 (189)
Q Consensus 71 g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~ 135 (189)
..|+|.++..+++ +|.+|++++.++...+.+.......+ .++.++.+|+.+.. .....|+++.
T Consensus 7 tGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~ 84 (255)
T TIGR01963 7 TGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVN 84 (255)
T ss_pred cCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456676666654 38899999998877666555444333 36788888887642 1235789888
Q ss_pred CCCC
Q psy13204 136 SPPW 139 (189)
Q Consensus 136 npp~ 139 (189)
+.-.
T Consensus 85 ~a~~ 88 (255)
T TIGR01963 85 NAGI 88 (255)
T ss_pred CCCC
Confidence 7643
No 438
>PRK07041 short chain dehydrogenase; Provisional
Probab=72.83 E-value=30 Score=25.48 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=41.6
Q ss_pred CCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccEEEECCCC
Q psy13204 72 CGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDVVFLSPPW 139 (189)
Q Consensus 72 ~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v~~npp~ 139 (189)
.|+|+++..+++ .|.+|+.++.+++..+....... .+ .++.++.+|..+.. ....+|.++.+...
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-GG--APVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-cC--CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 355665555544 48999999998776655444332 12 36778888876643 22357998888654
No 439
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=72.75 E-value=43 Score=26.14 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=55.8
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++=-|+-+|- ++..++++|.+++.+-.+.+.++...+.+... ++ .+.++..|..+.. ...
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v--~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGV--EVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCc--eEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 4455555554443 44444556999999999999988887777644 44 7899999987754 123
Q ss_pred CccEEEECCCCCCCc
Q psy13204 129 QGDVVFLSPPWGGPE 143 (189)
Q Consensus 129 ~~D~v~~npp~~~~~ 143 (189)
.+|+++-|.=|...+
T Consensus 84 ~IdvLVNNAG~g~~g 98 (265)
T COG0300 84 PIDVLVNNAGFGTFG 98 (265)
T ss_pred cccEEEECCCcCCcc
Confidence 799999998888755
No 440
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.38 E-value=31 Score=26.26 Aligned_cols=73 Identities=8% Similarity=-0.088 Sum_probs=44.0
Q ss_pred CCEEEEecCCC-ChHHHHHHH----hCCeEEEEeCCH---HHHHHHHHHHHHhCCCCceEEEeCCcccCC----------
Q psy13204 64 SDVVIDGFCGC-GGNTIQFAA----VCQKVISIDIDP---AKLRLAQHNASVYGVSHKIQFIQGDFFALA---------- 125 (189)
Q Consensus 64 ~~~vlD~g~G~-G~~~~~~~~----~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------- 125 (189)
+++++=.|+++ ++++.++++ .|++|+..+.+. +.++...... .+ .++.++..|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~--~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL--EG--QESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc--CC--CceEEEecCCCCHHHHHHHHHHHH
Confidence 67788888763 666666554 488988776542 3333222221 12 35677888876643
Q ss_pred -CCCCccEEEECCCCC
Q psy13204 126 -PSLQGDVVFLSPPWG 140 (189)
Q Consensus 126 -~~~~~D~v~~npp~~ 140 (189)
....+|+++.|.-+.
T Consensus 83 ~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 83 EEVGVIHGVAHCIAFA 98 (257)
T ss_pred HhCCCccEEEECcccC
Confidence 124689999887543
No 441
>PRK06701 short chain dehydrogenase; Provisional
Probab=72.18 E-value=37 Score=26.47 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=43.3
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHH-HHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPA-KLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
++++|=.|+ +|+++..+ ++.|.+|+.+..++. ..+.....+...+ .++.++.+|+.+.. ..
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 566776665 44444444 445899988887642 3333333333333 26778888876532 11
Q ss_pred CCccEEEECCCC
Q psy13204 128 LQGDVVFLSPPW 139 (189)
Q Consensus 128 ~~~D~v~~npp~ 139 (189)
..+|+++.+.-.
T Consensus 123 ~~iD~lI~~Ag~ 134 (290)
T PRK06701 123 GRLDILVNNAAF 134 (290)
T ss_pred CCCCEEEECCcc
Confidence 357999987654
No 442
>KOG1209|consensus
Probab=72.16 E-value=24 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=28.5
Q ss_pred CCCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHH
Q psy13204 63 ASDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRL 100 (189)
Q Consensus 63 ~~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~ 100 (189)
..+.|+=.||..|+++-++++ .|++|++.-.+-+....
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~ 47 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ 47 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh
Confidence 367899999999998877765 48999887665544433
No 443
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=72.12 E-value=33 Score=25.87 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=42.8
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++.++++ .|++|++++.++. +...+.+...+ .++..+..|..+.. ...
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 566666664 5566666655 4899999887642 22222232222 35777888876532 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|+-..
T Consensus 85 ~~D~li~~Ag~~ 96 (253)
T PRK08993 85 HIDILVNNAGLI 96 (253)
T ss_pred CCCEEEECCCCC
Confidence 689999887543
No 444
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.06 E-value=38 Score=25.51 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..++ +.|++|+.++.++.. ......+...+ .++.++.+|+.+.. ...
T Consensus 8 ~k~vlVtG-as~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 8 GKVVVVTG-AAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45666555 4455555444 458999999988642 22333333333 25677788876632 123
Q ss_pred CccEEEECCC
Q psy13204 129 QGDVVFLSPP 138 (189)
Q Consensus 129 ~~D~v~~npp 138 (189)
.+|+++.|.-
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 6899998763
No 445
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.85 E-value=14 Score=29.02 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=29.1
Q ss_pred EEEEecCC--CChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204 66 VVIDGFCG--CGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 105 (189)
Q Consensus 66 ~vlD~g~G--~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (189)
+|-=+|+| .++++..++..|.+|+.+|.+++.++.+.+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRI 48 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 45556776 33355555667999999999999998876554
No 446
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=71.76 E-value=3.1 Score=34.20 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.1
Q ss_pred CCEEEEecCCCChHHHHHHH
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA 83 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~ 83 (189)
.-.|+|+|||+|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45799999999988876643
No 447
>PLN00015 protochlorophyllide reductase
Probab=71.50 E-value=25 Score=27.66 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=41.5
Q ss_pred CCCChHHHHHHH----hC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEE
Q psy13204 72 CGCGGNTIQFAA----VC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFL 135 (189)
Q Consensus 72 ~G~G~~~~~~~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~ 135 (189)
.|+++++.++++ +| ++|+.+..+++..+.+...+...+ .++.++..|..+.. .....|+++.
T Consensus 4 Gas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lIn 81 (308)
T PLN00015 4 GASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK--DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVC 81 (308)
T ss_pred CCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 455666666554 48 899998888776655444332111 25677778876643 1236899999
Q ss_pred CCCC
Q psy13204 136 SPPW 139 (189)
Q Consensus 136 npp~ 139 (189)
|.-.
T Consensus 82 nAG~ 85 (308)
T PLN00015 82 NAAV 85 (308)
T ss_pred CCCc
Confidence 8755
No 448
>PRK07831 short chain dehydrogenase; Provisional
Probab=71.26 E-value=42 Score=25.38 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCEEEEecC-C--CCh-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFC-G--CGG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASV-YGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~-G--~G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.|+ | .|. .+..+++.|.+|+.++.+++.++...+.+.. .+. .++.++.+|..+.. ..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 556665654 2 223 2333345589999999988777766655543 221 25778888876532 11
Q ss_pred CCccEEEECCCCC
Q psy13204 128 LQGDVVFLSPPWG 140 (189)
Q Consensus 128 ~~~D~v~~npp~~ 140 (189)
...|+++.|.-..
T Consensus 96 g~id~li~~ag~~ 108 (262)
T PRK07831 96 GRLDVLVNNAGLG 108 (262)
T ss_pred CCCCEEEECCCCC
Confidence 3679999987653
No 449
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=71.19 E-value=57 Score=26.81 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCEEEEecCCCChHHHHHHHh------C---CeEEEEeC----CHHHHHHHHHHHH----HhCCCCceEEEeCC-cccCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV------C---QKVISIDI----DPAKLRLAQHNAS----VYGVSHKIQFIQGD-FFALA 125 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~------~---~~v~~vD~----~~~~~~~a~~~~~----~~~~~~~~~~~~~d-~~~~~ 125 (189)
.-+|+|+|.|.|.--..+.+. | -++|||+. +...++.+.+++. ..|++-..+.+..+ ..+..
T Consensus 111 ~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~ 190 (374)
T PF03514_consen 111 RVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLD 190 (374)
T ss_pred ceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCC
Confidence 558999999999855554443 2 27899999 7777777766653 34663344443233 22221
Q ss_pred ----CCCCccEEEECCCCCCCccccccccccccCcCCCCchhHHHHhhhcCCceEEEcCCCCCcc
Q psy13204 126 ----PSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYLPRTSDVF 186 (189)
Q Consensus 126 ----~~~~~D~v~~npp~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~lp~~~~~~ 186 (189)
.-..-.+++.|-+++.....+ -....+. ..-.++...+.+.|+.+...-...+.+
T Consensus 191 ~~~l~~~~~E~laVn~~~~Lh~l~~----~~~~~~~--~~~~~L~~ir~L~P~vvv~~E~ea~~n 249 (374)
T PF03514_consen 191 PSMLRLRPGEALAVNCMFQLHHLLD----ESGALEN--PRDAFLRVIRSLNPKVVVLVEQEADHN 249 (374)
T ss_pred HHHhCccCCcEEEEEeehhhhhhcc----ccccccc--hHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 112234666665554211111 0001111 133688899999999999888777654
No 450
>KOG0022|consensus
Probab=70.90 E-value=15 Score=29.56 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=32.0
Q ss_pred HhCCCCCEEEEecCCCChHHHHH-HHh--CCeEEEEeCCHHHHHHHHH
Q psy13204 59 SRCKASDVVIDGFCGCGGNTIQF-AAV--CQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 59 ~~~~~~~~vlD~g~G~G~~~~~~-~~~--~~~v~~vD~~~~~~~~a~~ 103 (189)
...++|.++.=+|+|.=+++... ++. ..+++|+|+|++-.+.|++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 34455888888888765555544 443 4579999999999888754
No 451
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=70.25 E-value=27 Score=26.34 Aligned_cols=71 Identities=21% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|.+|+.++.+++..+...... + .++.++.+|+.+.. ...
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45565444 56666666654 4899999999987665543322 1 25777888876542 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+....
T Consensus 80 ~id~li~~ag~~ 91 (257)
T PRK07067 80 GIDILFNNAALF 91 (257)
T ss_pred CCCEEEECCCcC
Confidence 579988876543
No 452
>PLN02253 xanthoxin dehydrogenase
Probab=70.18 E-value=29 Score=26.60 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=45.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|++|+.++.+++..+....... ...++.++.+|..+.. ...
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 55666555 56666666654 48999999988766554433332 1136788888887643 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 94 ~id~li~~Ag~ 104 (280)
T PLN02253 94 TLDIMVNNAGL 104 (280)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 453
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.14 E-value=42 Score=24.85 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=44.9
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++|+=.|++ |+.+..+++ .|.+|++++.+++..+.+....... .++.++.+|..+.. .-.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5677777764 555555543 4899999999987766554444322 25678888877532 012
Q ss_pred CccEEEECCC
Q psy13204 129 QGDVVFLSPP 138 (189)
Q Consensus 129 ~~D~v~~npp 138 (189)
.+|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 4688887654
No 454
>KOG1208|consensus
Probab=69.88 E-value=38 Score=27.14 Aligned_cols=73 Identities=18% Similarity=0.063 Sum_probs=46.5
Q ss_pred CCEEEEecCCC--Ch-HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCC
Q psy13204 64 SDVVIDGFCGC--GG-NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~--G~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~ 129 (189)
+.+++=.|+-+ |. .+..++.+|++|+-.-.+.+..+.+.+.+.......++.+.+.|..+.. ....
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ 114 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEGP 114 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 44454444433 22 3334455699998888888777777777665333347888999987743 3446
Q ss_pred ccEEEEC
Q psy13204 130 GDVVFLS 136 (189)
Q Consensus 130 ~D~v~~n 136 (189)
.|+.+.|
T Consensus 115 ldvLInN 121 (314)
T KOG1208|consen 115 LDVLINN 121 (314)
T ss_pred ccEEEeC
Confidence 7887766
No 455
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=69.73 E-value=20 Score=29.60 Aligned_cols=72 Identities=18% Similarity=0.064 Sum_probs=45.9
Q ss_pred CEEEEecCCCChHHHHH----HHhC-CeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEE
Q psy13204 65 DVVIDGFCGCGGNTIQF----AAVC-QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL 135 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~----~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~ 135 (189)
..||=+||| +.+... ++.+ .+|+..|.+++..+.+..... .+++....|+.+... -..+|+|+.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence 357778884 433333 3445 799999999988877655432 267888888877631 124587776
Q ss_pred C-CCCCCCc
Q psy13204 136 S-PPWGGPE 143 (189)
Q Consensus 136 n-pp~~~~~ 143 (189)
- |||....
T Consensus 75 ~~p~~~~~~ 83 (389)
T COG1748 75 AAPPFVDLT 83 (389)
T ss_pred eCCchhhHH
Confidence 5 4555443
No 456
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=69.57 E-value=52 Score=25.71 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCEEEEecCCCChHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHHH-Hh-CCCCceEEEeCCcccC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----C--QKVISIDIDPAKLRLAQHNAS-VY-GVSHKIQFIQGDFFAL 124 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----~--~~v~~vD~~~~~~~~a~~~~~-~~-~~~~~~~~~~~d~~~~ 124 (189)
+..++|+|+|+..-+.-+... + .+.+.+|+|...++..-+.+. .. ++ .+.-+++|....
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~~~~~~ 145 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCGDYELA 145 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhhhHHHH
Confidence 789999999999876666443 2 367899999987755433332 22 33 566677776544
No 457
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=69.47 E-value=16 Score=29.61 Aligned_cols=43 Identities=35% Similarity=0.429 Sum_probs=30.1
Q ss_pred CCCCCEEEEecCC-CChHHHHHHHh--CCeEEEEeCCHHHHHHHHH
Q psy13204 61 CKASDVVIDGFCG-CGGNTIQFAAV--CQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 61 ~~~~~~vlD~g~G-~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~ 103 (189)
.+++.+|.=+||| .|.-++..++. ..+++++|++++-++.|++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 3447788777776 34444444554 3479999999999988764
No 458
>PRK12743 oxidoreductase; Provisional
Probab=69.25 E-value=38 Score=25.59 Aligned_cols=73 Identities=15% Similarity=-0.044 Sum_probs=45.0
Q ss_pred CEEEEecCCCChHHHHHHHh----CCeEEEEe-CCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 65 DVVIDGFCGCGGNTIQFAAV----CQKVISID-IDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 65 ~~vlD~g~G~G~~~~~~~~~----~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
++++=.| |+|+++..+++. |++|+.+. .++...+.+.......+ .++.++..|..+.. ...
T Consensus 3 k~vlItG-as~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 3 QVAIVTA-SDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4555555 456666666553 88887764 45555555544444444 36788888877642 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.+.-..
T Consensus 80 ~id~li~~ag~~ 91 (256)
T PRK12743 80 RIDVLVNNAGAM 91 (256)
T ss_pred CCCEEEECCCCC
Confidence 689999986543
No 459
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=69.09 E-value=16 Score=28.67 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=42.4
Q ss_pred CCEEEEecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCCC----CCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP----SLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~ 135 (189)
+.+|+ +..|+|..+..+++. |.+|+++..++.............+...+++++.+|+.+... -..+|+|+.
T Consensus 4 ~~~il-VtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVC-VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEE-EECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 34454 445678877777654 889988877654322222111111222367899999876431 124788877
Q ss_pred CCC
Q psy13204 136 SPP 138 (189)
Q Consensus 136 npp 138 (189)
...
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 460
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.96 E-value=47 Score=25.04 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=44.0
Q ss_pred CCEEEEecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
++++|=.|++ |+++..+ ++.|++|+.++.+. ..+.+.+.....+ .++.++.+|..+.. ...
T Consensus 15 ~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 15 GKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5666666654 4444444 44589998888773 3333443333333 36778888877643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
.+|+++.+....
T Consensus 91 ~id~li~~ag~~ 102 (258)
T PRK06935 91 KIDILVNNAGTI 102 (258)
T ss_pred CCCEEEECCCCC
Confidence 579999887553
No 461
>PRK08267 short chain dehydrogenase; Provisional
Probab=68.71 E-value=23 Score=26.74 Aligned_cols=71 Identities=17% Similarity=-0.054 Sum_probs=45.5
Q ss_pred EEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------C--CCC
Q psy13204 66 VVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------P--SLQ 129 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~--~~~ 129 (189)
+++=.| |+|+++..+++ .|.+|+.++.+++.++....... + .++.++.+|+.+.. . ...
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 344444 44565555544 48999999999887666544332 2 36788888887633 1 346
Q ss_pred ccEEEECCCCCC
Q psy13204 130 GDVVFLSPPWGG 141 (189)
Q Consensus 130 ~D~v~~npp~~~ 141 (189)
+|+++.+.-...
T Consensus 78 id~vi~~ag~~~ 89 (260)
T PRK08267 78 LDVLFNNAGILR 89 (260)
T ss_pred CCEEEECCCCCC
Confidence 799998875543
No 462
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=68.58 E-value=9.7 Score=24.60 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=31.2
Q ss_pred ecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCC
Q psy13204 70 GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPW 139 (189)
Q Consensus 70 ~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~ 139 (189)
+.||+|..+..+++ ..++.+..+|+ ++++...+..+.. ....+|+|++-|=.
T Consensus 4 ~~Cg~G~sTS~~~~----------------ki~~~~~~~~~--~~~v~~~~~~~~~~~~~~~Diil~~Pqv 56 (96)
T cd05564 4 LVCSAGMSTSILVK----------------KMKKAAEKRGI--DAEIEAVPESELEEYIDDADVVLLGPQV 56 (96)
T ss_pred EEcCCCchHHHHHH----------------HHHHHHHHCCC--ceEEEEecHHHHHHhcCCCCEEEEChhH
Confidence 56888875544433 23455566666 5677777665543 23568988885443
No 463
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.45 E-value=47 Score=25.44 Aligned_cols=74 Identities=5% Similarity=-0.198 Sum_probs=42.7
Q ss_pred CCEEEEecCCCC-hHH----HHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGCG-GNT----IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~G-~~~----~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.|+++| +++ ..+++.|++|+..+.+....+.+.+ +.... ....++..|+.+.. ..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 567777777652 444 4445568999888876432222222 22111 24456777876632 12
Q ss_pred CCccEEEECCCCC
Q psy13204 128 LQGDVVFLSPPWG 140 (189)
Q Consensus 128 ~~~D~v~~npp~~ 140 (189)
..+|+++.|.-..
T Consensus 83 g~iD~linnAg~~ 95 (262)
T PRK07984 83 PKFDGFVHSIGFA 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 3689999998653
No 464
>PRK06057 short chain dehydrogenase; Provisional
Probab=67.91 E-value=38 Score=25.51 Aligned_cols=68 Identities=21% Similarity=0.102 Sum_probs=41.2
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++|+=.|+ +|+++..++ +.|++|+.++.++...+...+.. ...++..|..+.. ...
T Consensus 7 ~~~vlItGa-sggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06057 7 GRVAVITGG-GSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTAAETYG 78 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 677776666 455555554 44899999999876554433322 1145566655432 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
.+|+++.++-.
T Consensus 79 ~id~vi~~ag~ 89 (255)
T PRK06057 79 SVDIAFNNAGI 89 (255)
T ss_pred CCCEEEECCCc
Confidence 68999988654
No 465
>PRK07074 short chain dehydrogenase; Provisional
Probab=67.55 E-value=38 Score=25.50 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=42.7
Q ss_pred EEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCc
Q psy13204 66 VVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQG 130 (189)
Q Consensus 66 ~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~ 130 (189)
+++=.| |+|+++..++ +.|.+|++++.++...+...... .+ ..+.++.+|+.+.. ....+
T Consensus 4 ~ilItG-at~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~--~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 4 TALVTG-AAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL--GD--ARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred EEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cC--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 344344 4455555554 44889999999887665544333 12 25778888876643 11247
Q ss_pred cEEEECCCCC
Q psy13204 131 DVVFLSPPWG 140 (189)
Q Consensus 131 D~v~~npp~~ 140 (189)
|+++.+.-..
T Consensus 79 d~vi~~ag~~ 88 (257)
T PRK07074 79 DVLVANAGAA 88 (257)
T ss_pred CEEEECCCCC
Confidence 9999987543
No 466
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=67.37 E-value=36 Score=26.29 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=25.5
Q ss_pred cCCCcccc----cChHHHHHHHHHhCCCCCEEEEecCCCC
Q psy13204 40 DATESWYS----VTPEKVAQHIASRCKASDVVIDGFCGCG 75 (189)
Q Consensus 40 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~vlD~g~G~G 75 (189)
..+.+|++ .+.+...+.....+..|..++|+|+++.
T Consensus 9 ~t~dsf~~~~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st 48 (258)
T cd00423 9 VTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGEST 48 (258)
T ss_pred CCCCchhhccccCCHHHHHHHHHHHHHCCCCEEEECCCcC
Confidence 34444544 2446667766677777999999999988
No 467
>PRK07201 short chain dehydrogenase; Provisional
Probab=67.30 E-value=46 Score=29.16 Aligned_cols=74 Identities=14% Similarity=-0.009 Sum_probs=49.1
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++ +..|+|+++..+++ .|++|+.++.+++..+.........+ .++.++.+|+.+.. ...
T Consensus 371 ~k~vl-ItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 371 GKVVL-ITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 44555 45556676666654 48999999999887766655554433 26788888877642 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|.-..
T Consensus 448 ~id~li~~Ag~~ 459 (657)
T PRK07201 448 HVDYLVNNAGRS 459 (657)
T ss_pred CCCEEEECCCCC
Confidence 589999987543
No 468
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.27 E-value=49 Score=25.21 Aligned_cols=74 Identities=7% Similarity=-0.169 Sum_probs=43.0
Q ss_pred CCEEEEecC-CCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFC-GCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~-G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++=.|+ |+++++.++++ .|++|+....+....+.+++.....+ ....+.+|+.+.. ..
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCHHHHHHHHHHHHHHh
Confidence 567777776 45666666654 58898877655433333332222212 3346777877642 12
Q ss_pred CCccEEEECCCCC
Q psy13204 128 LQGDVVFLSPPWG 140 (189)
Q Consensus 128 ~~~D~v~~npp~~ 140 (189)
..+|+++.|.-..
T Consensus 83 g~iD~lVnnAG~~ 95 (261)
T PRK08690 83 DGLDGLVHSIGFA 95 (261)
T ss_pred CCCcEEEECCccC
Confidence 3689999997554
No 469
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=66.95 E-value=35 Score=25.86 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=42.6
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|+ +|+++..+++ .|++|+.++.+++.++..... .+ .++.++.+|..+.. ...
T Consensus 5 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 5 GEVVLVTGG-ASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---HG--DAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---cC--CceEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 455555554 5555555544 489999999988665443321 12 35777788876532 113
Q ss_pred CccEEEECCC
Q psy13204 129 QGDVVFLSPP 138 (189)
Q Consensus 129 ~~D~v~~npp 138 (189)
..|+++.|.-
T Consensus 79 ~id~li~~Ag 88 (262)
T TIGR03325 79 KIDCLIPNAG 88 (262)
T ss_pred CCCEEEECCC
Confidence 5799999864
No 470
>PRK05875 short chain dehydrogenase; Provisional
Probab=66.94 E-value=54 Score=24.96 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=45.4
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC------C-----CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA------P-----SL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~-----~~ 128 (189)
+++++=.|+ +|.++..+++ .|++|++++.+++..+.........+...++.++.+|+.+.. . ..
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 566776664 4555555544 488999999987766554444332221136778888876643 1 12
Q ss_pred CccEEEECCC
Q psy13204 129 QGDVVFLSPP 138 (189)
Q Consensus 129 ~~D~v~~npp 138 (189)
..|+++.+.-
T Consensus 86 ~~d~li~~ag 95 (276)
T PRK05875 86 RLHGVVHCAG 95 (276)
T ss_pred CCCEEEECCC
Confidence 5799988763
No 471
>PRK08226 short chain dehydrogenase; Provisional
Probab=66.76 E-value=53 Score=24.78 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=44.6
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|++|+.++.++...+.+.+ ....+ .++.++.+|+.+.. ...
T Consensus 6 ~~~~lItG-~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITG-ALQGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45666444 45666666554 48999999988764433322 22223 26678888887642 123
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.|.-..
T Consensus 82 ~id~vi~~ag~~ 93 (263)
T PRK08226 82 RIDILVNNAGVC 93 (263)
T ss_pred CCCEEEECCCcC
Confidence 579999886543
No 472
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=66.55 E-value=15 Score=29.66 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCEEEEecCC-CChHHHHHHHh-C-CeEEEEeCCHHHHHHHHHH
Q psy13204 64 SDVVIDGFCG-CGGNTIQFAAV-C-QKVISIDIDPAKLRLAQHN 104 (189)
Q Consensus 64 ~~~vlD~g~G-~G~~~~~~~~~-~-~~v~~vD~~~~~~~~a~~~ 104 (189)
+.+|+=+||| .|.++..+++. | .+|+.+|.++..++.|++.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 4589999999 46676777766 4 5789999999999998774
No 473
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=66.29 E-value=24 Score=25.32 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=38.8
Q ss_pred CCCChHHHH--HHHh---CCeEE--EEeCCHHHHHHH---HHHHHHhCCCCceEEE-eCCcccCC-----CCCCccEEEE
Q psy13204 72 CGCGGNTIQ--FAAV---CQKVI--SIDIDPAKLRLA---QHNASVYGVSHKIQFI-QGDFFALA-----PSLQGDVVFL 135 (189)
Q Consensus 72 ~G~G~~~~~--~~~~---~~~v~--~vD~~~~~~~~a---~~~~~~~~~~~~~~~~-~~d~~~~~-----~~~~~D~v~~ 135 (189)
.|.|.++.. +++. +..++ ..|-..+..+.. ..|+....- ..+.+. ..|+.+.. ....||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 466665544 4554 33554 466655555443 355544322 133333 33665554 3457999999
Q ss_pred CCCCCC
Q psy13204 136 SPPWGG 141 (189)
Q Consensus 136 npp~~~ 141 (189)
|-|..+
T Consensus 82 NFPH~G 87 (166)
T PF10354_consen 82 NFPHVG 87 (166)
T ss_pred eCCCCC
Confidence 999987
No 474
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=65.88 E-value=31 Score=25.93 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=39.9
Q ss_pred cCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEE
Q psy13204 71 FCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFL 135 (189)
Q Consensus 71 g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~ 135 (189)
..|+|+.+..+++ .|++|++++.+++.++...... + .++.++.+|+.+.. .....|+++.
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~ 80 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G--DNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN 80 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c--cceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4456666666554 4889999999987654433322 2 25777888876642 1135799887
Q ss_pred CCC
Q psy13204 136 SPP 138 (189)
Q Consensus 136 npp 138 (189)
+.-
T Consensus 81 ~ag 83 (248)
T PRK10538 81 NAG 83 (248)
T ss_pred CCC
Confidence 753
No 475
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.60 E-value=19 Score=28.10 Aligned_cols=40 Identities=25% Similarity=0.086 Sum_probs=27.5
Q ss_pred EEEEecCCCCh--HHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204 66 VVIDGFCGCGG--NTIQFAAVCQKVISIDIDPAKLRLAQHNA 105 (189)
Q Consensus 66 ~vlD~g~G~G~--~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (189)
+|.=+|+|.=+ ++..+++.|.+|+.+|.+++.++.++++.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 34456666333 44444556899999999999888876653
No 476
>PRK07825 short chain dehydrogenase; Provisional
Probab=65.41 E-value=53 Score=25.03 Aligned_cols=69 Identities=19% Similarity=-0.014 Sum_probs=42.9
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+.+++=.| |+|+++..+++ .|++|+.++.+++.++....... ++.++.+|+.+.. ...
T Consensus 5 ~~~ilVtG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITG-GARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45566444 45666665544 48999999998877655433321 4567778876532 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.|.-.
T Consensus 78 ~id~li~~ag~ 88 (273)
T PRK07825 78 PIDVLVNNAGV 88 (273)
T ss_pred CCCEEEECCCc
Confidence 57899988644
No 477
>PRK08628 short chain dehydrogenase; Provisional
Probab=65.39 E-value=53 Score=24.68 Aligned_cols=72 Identities=14% Similarity=0.024 Sum_probs=44.5
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.| |+|+++..+++ .|++++.+..++...+. ...+...+ .++.++..|..+.. ...
T Consensus 7 ~~~ilItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTG-GASGIGAAISLRLAEEGAIPVIFGRSAPDDEF-AEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCcEEEEcCChhhHHH-HHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 44555444 45666666654 48899888888766532 23333333 36788888886532 113
Q ss_pred CccEEEECCCC
Q psy13204 129 QGDVVFLSPPW 139 (189)
Q Consensus 129 ~~D~v~~npp~ 139 (189)
..|+++.++..
T Consensus 83 ~id~vi~~ag~ 93 (258)
T PRK08628 83 RIDGLVNNAGV 93 (258)
T ss_pred CCCEEEECCcc
Confidence 67999988754
No 478
>PLN02650 dihydroflavonol-4-reductase
Probab=64.85 E-value=23 Score=28.29 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=41.2
Q ss_pred EecCCCChHHHHHHHh----CCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEECCC
Q psy13204 69 DGFCGCGGNTIQFAAV----CQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFLSPP 138 (189)
Q Consensus 69 D~g~G~G~~~~~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~npp 138 (189)
=+..|+|..+..+++. |.+|++++.++.............+...++.++.+|+.+.. .-..+|.|+-...
T Consensus 9 LVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~ 86 (351)
T PLN02650 9 CVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVAT 86 (351)
T ss_pred EEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeCC
Confidence 3566788877777654 88999888776544332222111222125788889887643 1124687776543
No 479
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.64 E-value=24 Score=28.31 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=28.6
Q ss_pred CEEEEecCC--CChHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Q psy13204 65 DVVIDGFCG--CGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 105 (189)
Q Consensus 65 ~~vlD~g~G--~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 105 (189)
.+|-=+|+| ..+++..++..|.+|+.+|.+++..+.++..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 345566776 23355556677999999999999887665533
No 480
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=64.59 E-value=12 Score=30.91 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCChHHHHHHH---hCCeEEEEeCCHHHHHHHHH
Q psy13204 73 GCGGNTIQFAA---VCQKVISIDIDPAKLRLAQH 103 (189)
Q Consensus 73 G~G~~~~~~~~---~~~~v~~vD~~~~~~~~a~~ 103 (189)
|.|.++..++. .|.+|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 45554444432 38899999999999887765
No 481
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.51 E-value=68 Score=27.03 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=38.9
Q ss_pred CCEEEEecCCCChHH--HHHHHhCCeEEEEeCCHH-HHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECC
Q psy13204 64 SDVVIDGFCGCGGNT--IQFAAVCQKVISIDIDPA-KLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSP 137 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~--~~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~np 137 (189)
+.+|+=+|+|.-++. ..++++|.+|+++|.++. ......+.+...| +++..++... ....+|+|+..|
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~~~--~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG----ATVRLGPGPT--LPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC----CEEEECCCcc--ccCCCCEEEECC
Confidence 567888887754443 233445899999996653 3333333444444 3555444322 124578888865
No 482
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=64.48 E-value=7.1 Score=32.26 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.8
Q ss_pred HHHHHHhCCeEEEEeCCHHHHHHH
Q psy13204 78 TIQFAAVCQKVISIDIDPAKLRLA 101 (189)
Q Consensus 78 ~~~~~~~~~~v~~vD~~~~~~~~a 101 (189)
+..++++|.+|+|+|+++..++..
T Consensus 25 A~~fA~~G~~ViG~DIn~~~Vd~l 48 (436)
T COG0677 25 AAAFASAGFKVIGVDINQKKVDKL 48 (436)
T ss_pred HHHHHHcCCceEeEeCCHHHHHHH
Confidence 344456699999999999988764
No 483
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=64.46 E-value=36 Score=28.35 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=43.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----CCCCccEEEE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----PSLQGDVVFL 135 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~ 135 (189)
+++++ +..|+|+++.++++ .|.+|++++.+++.++.. ....+ ..+..+..|..+.. .-...|+++.
T Consensus 178 gK~VL-ITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~---~~~~~--~~v~~v~~Dvsd~~~v~~~l~~IDiLIn 251 (406)
T PRK07424 178 GKTVA-VTGASGTLGQALLKELHQQGAKVVALTSNSDKITLE---INGED--LPVKTLHWQVGQEAALAELLEKVDILII 251 (406)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HhhcC--CCeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence 66776 66688888888765 388999999887654321 11111 13556666665532 1236899998
Q ss_pred CCCC
Q psy13204 136 SPPW 139 (189)
Q Consensus 136 npp~ 139 (189)
|.-.
T Consensus 252 nAGi 255 (406)
T PRK07424 252 NHGI 255 (406)
T ss_pred CCCc
Confidence 7543
No 484
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.30 E-value=46 Score=27.72 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCEEEEecCCCChHHHH--HHHhCCeEEEEeCCH-HHHHHHHHHHHHhCCCCceEEEeCCcccCCCCCCccEEEECCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQ--FAAVCQKVISIDIDP-AKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 139 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~--~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~npp~ 139 (189)
+++|+=+|+|..+++.+ +++.|++|+++|.++ ..++.....+... .++++.++..+.. ...+|+|+.++=.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~-~~~~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPEEF-LEGVDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcchhH-hhcCCEEEECCCC
Confidence 56777777776443322 234499999999985 3333322333333 3456666654421 2458998886543
No 485
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=64.28 E-value=24 Score=26.45 Aligned_cols=41 Identities=34% Similarity=0.303 Sum_probs=30.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204 62 KASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQ 102 (189)
Q Consensus 62 ~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~ 102 (189)
.++.+|+-.|+|+ |.....+++. |.++++++.+++..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4488999999885 5555555554 889999999987776654
No 486
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=64.19 E-value=34 Score=21.96 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=30.7
Q ss_pred ecCCCChHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-CCCCccEEEECCCCCC
Q psy13204 70 GFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-PSLQGDVVFLSPPWGG 141 (189)
Q Consensus 70 ~g~G~G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~npp~~~ 141 (189)
+.||+|.-+..++. ...++.++..|+ ++++...+..+.. ....+|+|+.-++...
T Consensus 7 vvCgsG~~TS~m~~---------------~ki~~~l~~~gi--~~~v~~~~~~e~~~~~~~~D~iv~t~~~~~ 62 (94)
T PRK10310 7 VACGGAVATSTMAA---------------EEIKELCQSHNI--PVELIQCRVNEIETYMDGVHLICTTARVDR 62 (94)
T ss_pred EECCCchhHHHHHH---------------HHHHHHHHHCCC--eEEEEEecHHHHhhhcCCCCEEEECCcccc
Confidence 56888876554422 223333444555 4566666655442 1145788888776643
No 487
>PRK09072 short chain dehydrogenase; Provisional
Probab=64.07 E-value=56 Score=24.71 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCEEEEecCCCChHHHHHH----HhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC----------CCCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFA----AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA----------PSLQ 129 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~ 129 (189)
+.+++=.| |+|+++..++ +.|++|++++.+++..+.....+ ..+ .++.++.+|..+.. ....
T Consensus 5 ~~~vlItG-~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTG-ASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP--GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC--CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 34555444 4455555544 45899999999988776655444 122 36788888877643 1135
Q ss_pred ccEEEECCCCC
Q psy13204 130 GDVVFLSPPWG 140 (189)
Q Consensus 130 ~D~v~~npp~~ 140 (189)
.|+++.+....
T Consensus 81 id~lv~~ag~~ 91 (263)
T PRK09072 81 INVLINNAGVN 91 (263)
T ss_pred CCEEEECCCCC
Confidence 79999886543
No 488
>KOG1207|consensus
Probab=63.88 E-value=28 Score=25.66 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCEEEEecCCCCh---HHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccC
Q psy13204 64 SDVVIDGFCGCGG---NTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124 (189)
Q Consensus 64 ~~~vlD~g~G~G~---~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 124 (189)
|..|+--|+|.|. ....+++.|++|+++-.+++-+...-+.- +.-+..+++|...+
T Consensus 7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~-----p~~I~Pi~~Dls~w 65 (245)
T KOG1207|consen 7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET-----PSLIIPIVGDLSAW 65 (245)
T ss_pred ceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC-----CcceeeeEecccHH
Confidence 6677766666554 55666778999999999998776543221 12478888887654
No 489
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=63.88 E-value=10 Score=27.52 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCCCEEEEecCCCChHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Q psy13204 53 VAQHIASRCKASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLAQHNASVY 108 (189)
Q Consensus 53 ~~~~~~~~~~~~~~vlD~g~G~G~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~ 108 (189)
++.+++..++.+.+.+|+|+..|.+.--+++. ..+++++|.-.+|-...+.|...+
T Consensus 69 mrhwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqln 126 (286)
T PF05575_consen 69 MRHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLN 126 (286)
T ss_pred hhHhhhhhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeC
Confidence 56778888887889999999999988777776 567889998777766666555443
No 490
>PRK07060 short chain dehydrogenase; Provisional
Probab=63.71 E-value=58 Score=24.14 Aligned_cols=70 Identities=13% Similarity=-0.048 Sum_probs=41.6
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-------CCCCccE
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-------PSLQGDV 132 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~ 132 (189)
+.+++ +..|+|+.+..+++ .|.+|+.++.+++..+..... . ...++.+|..+.. ....+|+
T Consensus 9 ~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~----~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 9 GKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---T----GCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h----CCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 45566 44445555555544 488999999988655432221 1 2356667765532 1235899
Q ss_pred EEECCCCCC
Q psy13204 133 VFLSPPWGG 141 (189)
Q Consensus 133 v~~npp~~~ 141 (189)
++.+.....
T Consensus 81 vi~~ag~~~ 89 (245)
T PRK07060 81 LVNCAGIAS 89 (245)
T ss_pred EEECCCCCC
Confidence 999876543
No 491
>PRK07069 short chain dehydrogenase; Validated
Probab=63.68 E-value=51 Score=24.58 Aligned_cols=69 Identities=19% Similarity=0.010 Sum_probs=38.8
Q ss_pred CCCChHHHHHH----HhCCeEEEEeCC-HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCCCccEEEE
Q psy13204 72 CGCGGNTIQFA----AVCQKVISIDID-PAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSLQGDVVFL 135 (189)
Q Consensus 72 ~G~G~~~~~~~----~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~v~~ 135 (189)
.|+|+++..++ +.|++|+.++.+ ++.++...+.+........+..+.+|+.+.. .....|+++.
T Consensus 6 G~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 85 (251)
T PRK07069 6 GAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLVN 85 (251)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEEE
Confidence 34555555544 458999999987 5555554444433221113445666765532 1135799998
Q ss_pred CCCCC
Q psy13204 136 SPPWG 140 (189)
Q Consensus 136 npp~~ 140 (189)
++-..
T Consensus 86 ~ag~~ 90 (251)
T PRK07069 86 NAGVG 90 (251)
T ss_pred CCCcC
Confidence 86544
No 492
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=63.63 E-value=59 Score=24.22 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=43.3
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CCC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PSL 128 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~ 128 (189)
+++++=.|++ |+++..+++ .|++|+.++.++. ..+.+.....+ .++.++..|+.+.. ...
T Consensus 5 ~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 5 GKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5666666654 455555544 4889999987652 22223333222 36788888877643 113
Q ss_pred CccEEEECCCCC
Q psy13204 129 QGDVVFLSPPWG 140 (189)
Q Consensus 129 ~~D~v~~npp~~ 140 (189)
..|+++.++-..
T Consensus 80 ~~d~li~~ag~~ 91 (248)
T TIGR01832 80 HIDILVNNAGII 91 (248)
T ss_pred CCCEEEECCCCC
Confidence 589999887554
No 493
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=63.47 E-value=23 Score=28.29 Aligned_cols=41 Identities=41% Similarity=0.551 Sum_probs=29.3
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204 62 KASDVVIDGFCGC-GGNTIQFAAV-CQKVISIDIDPAKLRLAQ 102 (189)
Q Consensus 62 ~~~~~vlD~g~G~-G~~~~~~~~~-~~~v~~vD~~~~~~~~a~ 102 (189)
+++.+|+=.|+|. |..++.+++. |.++++++.+++.++.++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4478888888743 4455555554 778999999998877764
No 494
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.44 E-value=66 Score=24.72 Aligned_cols=73 Identities=14% Similarity=-0.103 Sum_probs=42.7
Q ss_pred CCEEEEecCCC-ChHH----HHHHHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGC-GGNT----IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~-G~~~----~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
++++|=.|++. ++++ ..+++.|++|+.++.+....+..++.....+ ....+.+|+.+.. .-
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 66788778765 2444 4445569999888877543333322222222 2245677876642 12
Q ss_pred CCccEEEECCCC
Q psy13204 128 LQGDVVFLSPPW 139 (189)
Q Consensus 128 ~~~D~v~~npp~ 139 (189)
...|+++.|.-.
T Consensus 84 g~iD~lVnnAG~ 95 (271)
T PRK06505 84 GKLDFVVHAIGF 95 (271)
T ss_pred CCCCEEEECCcc
Confidence 468999988754
No 495
>PRK08177 short chain dehydrogenase; Provisional
Probab=63.38 E-value=24 Score=26.06 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=37.7
Q ss_pred ecCCCChHHHHH----HHhCCeEEEEeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC---------CCCCccEEEEC
Q psy13204 70 GFCGCGGNTIQF----AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA---------PSLQGDVVFLS 136 (189)
Q Consensus 70 ~g~G~G~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~D~v~~n 136 (189)
+..|+|+++..+ ++.|.+|++++.++...+.+.. . .++.+..+|+.+.. ....+|+++.+
T Consensus 6 ItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~------~-~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ 78 (225)
T PRK08177 6 IIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA------L-PGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVN 78 (225)
T ss_pred EeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh------c-cccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence 334456655544 4458999999988765433221 1 24566667765532 22368999988
Q ss_pred CCC
Q psy13204 137 PPW 139 (189)
Q Consensus 137 pp~ 139 (189)
...
T Consensus 79 ag~ 81 (225)
T PRK08177 79 AGI 81 (225)
T ss_pred Ccc
Confidence 654
No 496
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=63.29 E-value=25 Score=27.62 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCCCCEEEEecCC-CChHHHHHHHh-CCeEEEEeCCHHHHHHHH
Q psy13204 61 CKASDVVIDGFCG-CGGNTIQFAAV-CQKVISIDIDPAKLRLAQ 102 (189)
Q Consensus 61 ~~~~~~vlD~g~G-~G~~~~~~~~~-~~~v~~vD~~~~~~~~a~ 102 (189)
+..+.+|+..|+| .|..++.+++. |.+|++++.+++..+.++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 3447777777765 46677777665 888999999998877764
No 497
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=63.09 E-value=70 Score=28.54 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=47.9
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVISIDIDPAKLRLAQHNASVY-GVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+++++ +..|+|+++..+++ .|++|++++.+++..+.....+... +. ..+..+.+|+.+.. .-
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~-~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGA-GRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCC-CcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 45565 44556666666654 4899999999988766554444322 22 25667888877642 11
Q ss_pred CCccEEEECCCCC
Q psy13204 128 LQGDVVFLSPPWG 140 (189)
Q Consensus 128 ~~~D~v~~npp~~ 140 (189)
..+|+++.|.-..
T Consensus 492 g~iDilV~nAG~~ 504 (676)
T TIGR02632 492 GGVDIVVNNAGIA 504 (676)
T ss_pred CCCcEEEECCCCC
Confidence 3589999987543
No 498
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.59 E-value=20 Score=27.98 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=25.4
Q ss_pred EEEecCCC--ChHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q psy13204 67 VIDGFCGC--GGNTIQFAAVCQKVISIDIDPAKLRLAQHN 104 (189)
Q Consensus 67 vlD~g~G~--G~~~~~~~~~~~~v~~vD~~~~~~~~a~~~ 104 (189)
|.=+|+|. +.++..++++|.+|+.+|.+++.++.+.+.
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQE 43 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence 44455542 223344455689999999999999887654
No 499
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.49 E-value=64 Score=24.26 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=43.1
Q ss_pred CCEEEEecCCC-ChHHHHHH----HhCCeEEEEeCC------------HHHHHHHHHHHHHhCCCCceEEEeCCcccCC-
Q psy13204 64 SDVVIDGFCGC-GGNTIQFA----AVCQKVISIDID------------PAKLRLAQHNASVYGVSHKIQFIQGDFFALA- 125 (189)
Q Consensus 64 ~~~vlD~g~G~-G~~~~~~~----~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 125 (189)
++.++=.|++. |+++..++ +.|++|+.++.+ +.... ........+ .++.++..|+.+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--VRCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--CeEEEEECCCCCHHH
Confidence 45677677653 45555554 448899988765 22222 222233223 36788888887632
Q ss_pred ----------CCCCccEEEECCCC
Q psy13204 126 ----------PSLQGDVVFLSPPW 139 (189)
Q Consensus 126 ----------~~~~~D~v~~npp~ 139 (189)
....+|+++.+.-.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 11368999987643
No 500
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.26 E-value=60 Score=24.17 Aligned_cols=72 Identities=10% Similarity=-0.013 Sum_probs=42.7
Q ss_pred CCEEEEecCCCChHHHHHHH----hCCeEEE-EeCCHHHHHHHHHHHHHhCCCCceEEEeCCcccCC-----------CC
Q psy13204 64 SDVVIDGFCGCGGNTIQFAA----VCQKVIS-IDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA-----------PS 127 (189)
Q Consensus 64 ~~~vlD~g~G~G~~~~~~~~----~~~~v~~-vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~ 127 (189)
+.+++ +..|+|+++..+++ .|++|+. ...+++..+.+.+.....+ .++.++.+|..+.. ..
T Consensus 4 ~~~vl-ItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVAL-VTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34555 44456776666655 3888765 4556655554444444333 36778888876642 11
Q ss_pred CCccEEEECCC
Q psy13204 128 LQGDVVFLSPP 138 (189)
Q Consensus 128 ~~~D~v~~npp 138 (189)
...|+++.+..
T Consensus 81 ~~id~vi~~ag 91 (250)
T PRK08063 81 GRLDVFVNNAA 91 (250)
T ss_pred CCCCEEEECCC
Confidence 25799998764
Done!