RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13204
(189 letters)
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 62.9 bits (152), Expect = 7e-13
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Query: 40 DATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKL 98
D + +S K +A K ++V+D F G G ++ A KVI+I+ DP
Sbjct: 84 DVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF 143
Query: 99 RLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSI 151
+ N + V ++ D D + + E+ + SI
Sbjct: 144 KFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIPKALSI 196
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 54.8 bits (131), Expect = 2e-10
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 49 TPEKVAQHIAS--RCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 106
T +V I +DV +D CG GG T++ A ++V +ID +P + + N
Sbjct: 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ 76
Query: 107 VYGVSHKIQFIQGDFFALAPSL-QGDVVFLS 136
+G+ + ++GD + D+ +
Sbjct: 77 RHGLGDNVTLMEGDAPEALCKIPDIDIAVVG 107
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 45.8 bits (108), Expect = 6e-07
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 51 EKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPA--------KLRLAQ 102
E VA+ + + V+D G G + A+V +V ++ +P R
Sbjct: 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYA 135
Query: 103 HNASVYGVSHKIQFIQGDFFALAPSL--QGDVVFLSPPWGGPEYARSSFSIDNIF 155
+ ++Q I + + VV+L P + P +S+ +
Sbjct: 136 DAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF--PHKQKSALVKKEMR 188
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 45.9 bits (108), Expect = 8e-07
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)
Query: 52 KVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVS 111
+ ++ V++ F G ++ AA +V +D + A+ N + G+
Sbjct: 121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE 180
Query: 112 H-KIQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF 165
I++I D + D++ PP G + + +
Sbjct: 181 QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQL------FDHLPLML 234
Query: 166 QVARGISPNVGYYL 179
+ R I L
Sbjct: 235 DICREILSPKALGL 248
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 44.8 bits (105), Expect = 2e-06
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 15/110 (13%)
Query: 42 TESWYSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAA--VCQKVISIDIDPAK 97
+ Y T + + D+ +D G G +Q AA C+ ++
Sbjct: 128 SPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIP 187
Query: 98 LRLAQHNASVYGV--------SHKIQFIQGDFFAL---APSLQGDVVFLS 136
+ A+ + + +GDF + V+F++
Sbjct: 188 AKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN 237
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 43.4 bits (101), Expect = 4e-06
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 11/134 (8%)
Query: 57 IASRCKASDVVIDGFCGCGGNTIQFAAV-CQKVISIDIDPAKLRLAQHNASVYGVSHKIQ 115
I K D V+D CG GG+ +++ + +DI + A+ A K+
Sbjct: 18 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 77
Query: 116 FIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNV 175
F D + + S FS F +
Sbjct: 78 FRAQDSYGRHM----------DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127
Query: 176 GYYLPRTSDVFELF 189
GY++ +
Sbjct: 128 GYFIMTVPSRDVIL 141
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 43.6 bits (102), Expect = 4e-06
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 19 DTVNNSTGLEYFEL--TLADADNDATESWYSVTP-------EKVAQHIASRC--KASDVV 67
+ +S G +Y L D + + K I S D V
Sbjct: 51 QILRSSFGKQYMLRRPALED--------YVVLMKRGTAITFPKDINMILSMMDINPGDTV 102
Query: 68 IDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGD 120
++ G GG ++ + +VIS ++ LA+ N + S K+ ++
Sbjct: 103 LEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 41.6 bits (97), Expect = 2e-05
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 46 YSVTPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAV--CQKVISIDIDPAKLRLA 101
Y + +C K D +D G G +Q A C +I L
Sbjct: 197 YGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 256
Query: 102 QHNASVYGVSHKIQFIQGDFFALA 125
K+ ++ + +
Sbjct: 257 ILQYEELKKRCKLYGMRLNNVEFS 280
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 40.4 bits (94), Expect = 4e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 52 KVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQ---KVISIDIDPAKLRLAQHNAS 106
A +I RC + +++ G G + + ++ D L+ A N S
Sbjct: 72 IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131
Query: 107 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPW 139
+ ++ + D D V P
Sbjct: 132 EFYDIGNVRTSRSDIADFISDQMYDAVIADIPD 164
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 40.0 bits (93), Expect = 8e-05
Identities = 16/100 (16%), Positives = 25/100 (25%), Gaps = 18/100 (18%)
Query: 57 IASRCKASDVVIDGFCGCGGNTIQFA--AVCQKVISIDIDPAKLRLAQHNASVYGVSH-- 112
+ +V+D G I+FA ++V DI L + N +
Sbjct: 39 VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 98
Query: 113 ------------KIQFIQGDFFALAPSLQG--DVVFLSPP 138
I D L + L P
Sbjct: 99 ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPF 138
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces
viridochromogenes [TaxId: 1938]}
Length = 249
Score = 38.9 bits (90), Expect = 2e-04
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 9/63 (14%)
Query: 87 KVISIDIDPAKLRLA---QHNASVYGVSHKIQFIQGDFFAL------APSLQGDVVFLSP 137
+ + A + + G + D F DVV
Sbjct: 116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL 175
Query: 138 PWG 140
P+G
Sbjct: 176 PYG 178
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 37.4 bits (86), Expect = 4e-04
Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 15/122 (12%)
Query: 62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119
+ + V+ G A + + +++ + I +
Sbjct: 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLF 111
Query: 120 DFFALA-PSLQGDVVF-----LSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISP 173
D S + V ++ ++ F ++ G + AR I
Sbjct: 112 DASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEF----FLKEKGEVVIMVKARSIDS 167
Query: 174 NV 175
Sbjct: 168 TA 169
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 37.0 bits (85), Expect = 7e-04
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 3/117 (2%)
Query: 62 KASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQG 119
K ++ G A + V +I+ P +R + I
Sbjct: 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN 132
Query: 120 DFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVG 176
A + V + P A F ++GG + AR I
Sbjct: 133 KPQEYAN-IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 36.1 bits (82), Expect = 0.001
Identities = 16/77 (20%), Positives = 28/77 (36%)
Query: 58 ASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFI 117
+ C+A V+D G G + F+ Q+ I +D + +A A GV +
Sbjct: 11 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQ 70
Query: 118 QGDFFALAPSLQGDVVF 134
P D++
Sbjct: 71 GTAESLPFPDDSFDIIT 87
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
monocytogenes [TaxId: 1639]}
Length = 328
Score = 36.1 bits (82), Expect = 0.001
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 15/128 (11%)
Query: 30 FELTLADADNDATESWYSVTPEKVAQHIA------SRCKASDVVIDGFCGCGGNTIQFAA 83
+L L + + +TP+ + +A + K + ++D CG
Sbjct: 78 LQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVIN 137
Query: 84 VCQK-------VISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLS 136
+ +D+D + LA A + K+ + D A DVV
Sbjct: 138 QLELKGDVDVHASGVDVDDLLISLALVGADLQ--RQKMTLLHQDGLANLLVDPVDVVISD 195
Query: 137 PPWGGPEY 144
P G
Sbjct: 196 LPVGYYPD 203
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 35.5 bits (81), Expect = 0.002
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 49 TPEKVAQHIASRCKASD-----VVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQ 102
T A + VID G G + V + DIDP + A+
Sbjct: 29 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 88
Query: 103 HNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
N + F+ D ++ ++PP+G
Sbjct: 89 RNCG------GVNFMVADVSEISGKYD--TWIMNPPFG 118
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 35.3 bits (80), Expect = 0.003
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 65 DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123
VV+D CG G ++ A A +KV+ +D L A + + I I+G
Sbjct: 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEE 95
Query: 124 LAPSLQGDVVFLSPPWG 140
+ ++ V +S G
Sbjct: 96 VHLPVEKVDVIISEWMG 112
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 34.4 bits (78), Expect = 0.004
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 67 VIDGFCGCGGNTIQFAAVC--QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFAL 124
ID G A ++ ++D A+ N +S I+ ++ L
Sbjct: 65 GIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124
Query: 125 -------APSLQGDVVFLSPPW 139
+ D +PP+
Sbjct: 125 LMDALKEESEIIYDFCMCNPPF 146
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 34.3 bits (77), Expect = 0.005
Identities = 8/86 (9%), Positives = 17/86 (19%), Gaps = 1/86 (1%)
Query: 36 DADNDATESWYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQK-VISIDID 94
D E + + D +ID G + A + + D
Sbjct: 24 DGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFT 83
Query: 95 PAKLRLAQHNASVYGVSHKIQFIQGD 120
+ ++
Sbjct: 84 DRNREELEKWLKKEPGAYDWTPAVKF 109
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 34.2 bits (77), Expect = 0.006
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 67 VIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALA 125
+I F G GG + F A + + + + D + + + N H + I+GD ++
Sbjct: 3 LISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN-------HSAKLIKGDISKIS 55
Query: 126 PSLQGDVVFLSPPW 139
+
Sbjct: 56 SDEFPKCDGIIGGP 69
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 33.5 bits (75), Expect = 0.009
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHN 104
K ++ V+D G G FA +KV++ D+ L++A+
Sbjct: 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 56
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 33.7 bits (76), Expect = 0.010
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 45 WYSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHN 104
++ + + +D F GG + A ++V+++D LR A+ N
Sbjct: 127 KTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEEN 186
Query: 105 ASVYGVSHKIQFIQGDFFALAPSLQG-----DVVFLSPPWGGPEYAR 146
A + G+ ++ ++ + F L L+ D+V L PP
Sbjct: 187 ARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKD 232
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 33.1 bits (74), Expect = 0.011
Identities = 13/113 (11%), Positives = 26/113 (23%)
Query: 67 VIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFALAP 126
V+ CG + + V+ ++ A + +
Sbjct: 24 VLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83
Query: 127 SLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLFQVARGISPNVGYYL 179
GD L+ G A + P R + + + L
Sbjct: 84 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 136
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 33.0 bits (74), Expect = 0.015
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 67 VIDGFCGCGGNTIQF-AAVCQKVISIDIDPAKLRLAQHN 104
ID F G GG + + + V S + D + + N
Sbjct: 14 FIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMN 52
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 32.8 bits (74), Expect = 0.015
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 65 DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFFA 123
VV+D G G + A A +KVI I+ + + + H + I+G
Sbjct: 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKA-NKLDHVVTIIKGKVEE 93
Query: 124 L 124
+
Sbjct: 94 V 94
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 32.4 bits (72), Expect = 0.024
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 67 VIDGFCGCGGNTIQFAAV---CQKVISIDIDPAKLRLAQHN 104
V++ + G GG Q V +ID++ + ++N
Sbjct: 5 VLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN 45
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 32.1 bits (72), Expect = 0.027
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 65 DVVIDGFCGCGGNTIQFA-AVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122
+V+D CG G ++ A + VI +D+ +A+ + G S KI ++G
Sbjct: 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSII-EMAKELVELNGFSDKITLLRGKLE 97
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 30.4 bits (67), Expect = 0.10
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 49 TPEKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNAS 106
TP +V + S V++ C G F ++ + + +
Sbjct: 3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGP----FLRAFREAH---GTAYRFVGVEIDPK 55
Query: 107 VYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWG 140
+ + I DF P D++ +PP+G
Sbjct: 56 ALDLPPWAEGILADFLLWEPGEAFDLILGNPPYG 89
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 30.1 bits (67), Expect = 0.11
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 62 KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHN 104
+ V +D G G+ +VI +D DP + A+
Sbjct: 17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL 59
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 30.4 bits (67), Expect = 0.11
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 56 HIASRCKASDVVIDGFCGCGGNTIQFAAVC--QKVISIDIDP-----AKLRLAQ 102
I + +D+V+D F G G T A + I D++ A L Q
Sbjct: 205 IIRASSNPNDLVLDCFMGSG--TTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ 256
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 28.7 bits (63), Expect = 0.39
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 51 EKVAQHIASRC--KASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNASVY 108
+ I + + +DVV++ G G T++ +KV++ ++DP +
Sbjct: 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT 66
Query: 109 GVSHKIQFIQGDFF 122
V+ K+Q + GD
Sbjct: 67 PVASKLQVLVGDVL 80
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 28.8 bits (63), Expect = 0.42
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Query: 28 EYFELTLADADNDATESWYSVTPEKVAQHIASRCKASDV--VIDGFCGCGGNTIQFAAVC 85
+Y + A S T + + + V+D CG G ++I
Sbjct: 20 QYADGEAARVWQLYIGDTRSRT-AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG 78
Query: 86 QKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQGDFF 122
V S+D L+ A +
Sbjct: 79 FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA 115
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 27.8 bits (61), Expect = 0.60
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQHNA 105
V +V + + + +++D G GG++ C I ID L
Sbjct: 8 IPVMVREVIEFLKP--EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEE 65
Query: 106 SVYGVSHKIQFIQGDFFALAPSLQ 129
+ S ++ + + L+
Sbjct: 66 KLKEFSDRVSLFKVSYREADFLLK 89
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 26.0 bits (56), Expect = 2.1
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 67 VIDGFCGCGGNTIQFAAVCQKVISIDID 94
V+D F G GG I+ + +
Sbjct: 18 VLDLFAGSGGLAIEAVSRGMSAAVLVEK 45
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
{Haemophilus influenzae [TaxId: 727]}
Length = 225
Score = 25.9 bits (55), Expect = 3.4
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQ----KVISIDIDPAKLRLA 101
YS + A V D C G T+ K+I ID +
Sbjct: 22 YSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 81
Query: 102 QHNASVYGVSHKIQFIQ 118
+ + + Y ++ +
Sbjct: 82 RQHIAAYHSEIPVEILC 98
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738
{Erwinia carotovora [TaxId: 554]}
Length = 225
Score = 24.9 bits (53), Expect = 5.8
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 67 VIDGFCGCGGNTIQFAAVCQKVISIDIDP 95
+++ G T + + ++
Sbjct: 24 LLELGSFKGDFTSRLQEHFNDITCVEASE 52
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 25.0 bits (53), Expect = 5.9
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 46 YSVTPEKVAQHIASRCKASDVVIDGFCGCGGNTIQFAAVCQKVISIDI 93
Y + + + D +D CG G T + ++D+
Sbjct: 20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDL 67
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia
coli [TaxId: 562]}
Length = 245
Score = 24.9 bits (53), Expect = 6.1
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 49 TPEKVAQHIAS-RCKASDVVIDGFCGCGGNTIQFAA 83
T EK A R K ++D G G +A
Sbjct: 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWAR 53
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
protein 36, VPS36 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 130
Score = 24.5 bits (53), Expect = 6.2
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 12/54 (22%)
Query: 112 HKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNIFPEQGGGRRLF 165
+ + G F +P L ++F P E+ + SF LF
Sbjct: 75 AYVNYSSG-FLTRSPRL---ILFFKDPSSSTEFVQLSFR--------KSDGVLF 116
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 24.8 bits (53), Expect = 6.6
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 66 VVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLR----LAQHNASVYGVSHKIQFIQGDF 121
+ ++ G G A + I ID K L + + D
Sbjct: 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL 93
Query: 122 FALAPSLQGDVVFLSPPWGGPEY 144
+ D ++L+ P+
Sbjct: 94 TDYFEDGEIDRLYLNFSDPWPKK 116
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 24.9 bits (53), Expect = 6.8
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 45 WYSVTPEKVAQHIASR-CKASDVVIDGFCGCGGNTIQFAAVCQKVISIDIDPAKLRLAQH 103
Y + + + R + V+D CG G T FA ++ + +D +K+ +
Sbjct: 65 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 124
Query: 104 NASVYGVSHKIQFIQGDFFA 123
V+ + F+
Sbjct: 125 AKRYPQVTFCVASSHRLPFS 144
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 291
Score = 24.7 bits (53), Expect = 7.3
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 25/84 (29%)
Query: 95 PAKLRLAQHNASVYGVSHKIQFIQGDFFALAPSLQGDVVFLSPPWGGPEYARSSFSIDNI 154
P +RLA H + + GG F +
Sbjct: 41 PVLVRLAWHISGTWDKHDN-------------------------TGGSYGGTYRFKKEFN 75
Query: 155 FPEQGGGRRLFQVARGISPNVGYY 178
P G + F+ I +
Sbjct: 76 DPSNAGLQNGFKFLEPIHKEFPWI 99
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 202
Score = 24.6 bits (52), Expect = 8.1
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 79 IQFAAVCQKVISIDIDPAKLRLAQHNASVYGVSHKIQFIQ 118
+A +VI +D+ K+ L S +Q
Sbjct: 17 GCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQ 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 716,075
Number of extensions: 32059
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 45
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)