Query psy13205
Match_columns 267
No_of_seqs 213 out of 1917
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:50:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 88.4 0.46 1.6E-05 30.3 3.3 39 63-101 4-42 (56)
2 3j21_g 50S ribosomal protein L 78.2 1.2 4E-05 28.0 2.0 26 76-101 12-37 (51)
3 2dkt_A Ring finger and CHY zin 69.4 1.8 6.2E-05 33.2 1.6 46 73-118 78-127 (143)
4 2jrp_A Putative cytoplasmic pr 57.4 2.6 8.7E-05 29.1 0.3 34 80-114 4-39 (81)
5 1joc_A EEA1, early endosomal a 49.0 6.6 0.00023 29.2 1.5 23 78-100 69-93 (125)
6 1x4u_A Zinc finger, FYVE domai 42.4 14 0.00047 25.2 2.2 22 79-100 15-38 (84)
7 2c6a_A Ubiquitin-protein ligas 41.0 12 0.0004 22.7 1.4 24 77-100 12-35 (46)
8 2cr8_A MDM4 protein; ZF-ranbp 39.7 17 0.00057 22.5 2.0 24 77-100 10-33 (53)
9 2yw8_A RUN and FYVE domain-con 39.4 13 0.00046 25.2 1.7 22 79-100 20-43 (82)
10 3t7l_A Zinc finger FYVE domain 38.4 13 0.00044 25.8 1.5 22 79-100 21-44 (90)
11 1z2q_A LM5-1; membrane protein 37.9 17 0.00059 24.8 2.1 22 79-100 22-45 (84)
12 2knc_B Integrin beta-3; transm 34.9 58 0.002 22.0 4.4 43 210-252 19-66 (79)
13 2jne_A Hypothetical protein YF 34.3 11 0.00037 26.8 0.6 35 79-114 33-69 (101)
14 2k1p_A Zinc finger RAN-binding 31.6 44 0.0015 18.4 2.8 26 76-101 4-29 (33)
15 1wfk_A Zinc finger, FYVE domai 28.6 28 0.00097 24.0 2.0 24 77-100 8-33 (88)
16 1vfy_A Phosphatidylinositol-3- 27.6 27 0.00092 23.0 1.6 21 80-100 13-35 (73)
17 3arc_I Photosystem II reaction 27.1 94 0.0032 17.8 3.7 27 45-71 8-34 (38)
18 4gz8_A Semaphorin-3A; multi-do 23.6 14 0.00047 35.6 -0.6 19 96-114 505-523 (667)
19 1dvp_A HRS, hepatocyte growth 23.1 36 0.0012 27.5 1.9 23 93-115 162-186 (220)
20 3u5e_m 60S ribosomal protein L 23.0 38 0.0013 24.8 1.9 24 77-100 92-117 (128)
21 3gj3_B Nuclear pore complex pr 23.0 50 0.0017 18.4 1.9 27 77-103 6-32 (33)
22 3al9_A Plexin-A2; beta-propell 22.8 20 0.00068 33.5 0.3 23 96-118 485-510 (539)
23 3j20_Y 30S ribosomal protein S 21.3 52 0.0018 20.1 2.0 24 76-99 17-44 (50)
24 1twf_L ABC10-alpha, DNA-direct 21.0 50 0.0017 21.8 2.0 26 78-103 28-56 (70)
25 2ect_A Ring finger protein 126 20.1 39 0.0013 21.9 1.3 12 106-117 52-63 (78)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=88.43 E-value=0.46 Score=30.26 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=29.5
Q ss_pred cCCCCCCCCCCccccceecCccccccCCCCccCcCCCcc
Q psy13205 63 MDPGAIPKVNGITVRMKWCVTCKFYRPPRCSHCSVCNYC 101 (267)
Q Consensus 63 ~dPG~ip~~~~~~~~~~~C~~C~~~kP~Rs~hC~~C~~c 101 (267)
+||.-.+...........|..|...-|+|+.-|+.|+.-
T Consensus 4 ~e~~~~~lA~k~~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 4 TDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCSCCSSTTTTCSCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred cchhHHHHHHHHHhchhhhccccCcCCcccccccCCCCC
Confidence 355544444444556789999999999999999988754
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.23 E-value=1.2 Score=27.96 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=22.6
Q ss_pred ccceecCccccccCCCCccCcCCCcc
Q psy13205 76 VRMKWCVTCKFYRPPRCSHCSVCNYC 101 (267)
Q Consensus 76 ~~~~~C~~C~~~kP~Rs~hC~~C~~c 101 (267)
...+.|..|....|++++.|+.|+.-
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred hCCccCCCCCCcCCCCceecCCCCCc
Confidence 35678999999999999999999764
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=69.40 E-value=1.8 Score=33.16 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=36.0
Q ss_pred CccccceecCccccccCC-CCccCcCCCccccC---ccccCccccccccc
Q psy13205 73 GITVRMKWCVTCKFYRPP-RCSHCSVCNYCIET---FDHHCPWVNNCIGR 118 (267)
Q Consensus 73 ~~~~~~~~C~~C~~~kP~-Rs~hC~~C~~cv~~---~DHHC~w~~~CIg~ 118 (267)
+......||+.|+.+.++ ...||..|+.|... ---||.-+|.|+..
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 344566789999987554 45889999999886 45699999999875
No 4
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=57.43 E-value=2.6 Score=29.05 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=17.1
Q ss_pred ecCcccccc--CCCCccCcCCCccccCccccCccccc
Q psy13205 80 WCVTCKFYR--PPRCSHCSVCNYCIETFDHHCPWVNN 114 (267)
Q Consensus 80 ~C~~C~~~k--P~Rs~hC~~C~~cv~~~DHHC~w~~~ 114 (267)
.|++|+... -.+.+||..|++-+.+-. .||-|+.
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEE-ECSSSCS
T ss_pred CCCCCCCccccCCCceECccccccCCCcc-cCcchhh
Confidence 455555332 223445666655555555 5555554
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.97 E-value=6.6 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=13.3
Q ss_pred ceecCccccc--cCCCCccCcCCCc
Q psy13205 78 MKWCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 78 ~~~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
...|..|... .-.|-|||+.|++
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CCCCcCcCCccccccccccCCCCCe
Confidence 3466666643 2246667777666
No 6
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.38 E-value=14 Score=25.23 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=11.3
Q ss_pred eecCccccc--cCCCCccCcCCCc
Q psy13205 79 KWCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 79 ~~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
..|..|+.. .-.|-|||+.|++
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~ 38 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGN 38 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCC
T ss_pred CcCcCcCCccccchhhhhhcCCCc
Confidence 355555542 2235566666655
No 7
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=41.05 E-value=12 Score=22.70 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=19.9
Q ss_pred cceecCccccccCCCCccCcCCCc
Q psy13205 77 RMKWCVTCKFYRPPRCSHCSVCNY 100 (267)
Q Consensus 77 ~~~~C~~C~~~kP~Rs~hC~~C~~ 100 (267)
..-.|.+|+..-||--+||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 456799999999999999988854
No 8
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.67 E-value=17 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.7
Q ss_pred cceecCccccccCCCCccCcCCCc
Q psy13205 77 RMKWCVTCKFYRPPRCSHCSVCNY 100 (267)
Q Consensus 77 ~~~~C~~C~~~kP~Rs~hC~~C~~ 100 (267)
..-.|.+|+..-||--+||..|-.
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCC
T ss_pred ceeecccccccCCCccchhHHHHH
Confidence 345799999999998999988855
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.40 E-value=13 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=10.8
Q ss_pred eecCccccc--cCCCCccCcCCCc
Q psy13205 79 KWCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 79 ~~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
..|..|+.. .-.|-|||+.|++
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCcCCcccCccccccCCCCCC
Confidence 345555532 1235556666555
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.45 E-value=13 Score=25.83 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=11.0
Q ss_pred eecCccccc--cCCCCccCcCCCc
Q psy13205 79 KWCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 79 ~~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
..|..|+.. .-.|-|||+.|++
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~ 44 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGK 44 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CcCcCCCCcccchhhCccccCCCC
Confidence 456666532 1234555665554
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.94 E-value=17 Score=24.77 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=10.2
Q ss_pred eecCccccc--cCCCCccCcCCCc
Q psy13205 79 KWCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 79 ~~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
..|..|+.. .-.|-|||+.|++
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~ 45 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGY 45 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCC
T ss_pred CCCcCcCCccccchhcccccCCCc
Confidence 345555432 1234455555554
No 12
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.94 E-value=58 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhhh-----hcccCCCCCCCChh
Q psy13205 210 IAILFIPIFGLTGFHMVLVARGRTTNEQV-----TGKFKGGYNPFSHG 252 (267)
Q Consensus 210 ~~~~~~~~~~l~~~h~~li~~n~TT~E~~-----~~~~~~~~npy~~G 252 (267)
.+++++.+..++++-+....+.+--+++. +.++++..||--+.
T Consensus 19 ~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~NPlyk~ 66 (79)
T 2knc_B 19 GAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccC
Confidence 33444444445555555444444444333 33445566775443
No 13
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.33 E-value=11 Score=26.76 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=24.3
Q ss_pred eecCcccccc--CCCCccCcCCCccccCccccCccccc
Q psy13205 79 KWCVTCKFYR--PPRCSHCSVCNYCIETFDHHCPWVNN 114 (267)
Q Consensus 79 ~~C~~C~~~k--P~Rs~hC~~C~~cv~~~DHHC~w~~~ 114 (267)
..|++|+... -.+..||..|++-+.+ --+||-|+.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~-~a~CPdC~q 69 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEM-KALCPDCHQ 69 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEE-EEECTTTCS
T ss_pred ccCccCCCcceecCCEEECccccchhhc-cccCcchhh
Confidence 7899998542 3456679999886444 456777765
No 14
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=31.59 E-value=44 Score=18.44 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=18.2
Q ss_pred ccceecCccccccCCCCccCcCCCcc
Q psy13205 76 VRMKWCVTCKFYRPPRCSHCSVCNYC 101 (267)
Q Consensus 76 ~~~~~C~~C~~~kP~Rs~hC~~C~~c 101 (267)
.++-.|+.|...-=+|...|..|+.-
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCCcccCCCCCccccccccccccCCc
Confidence 44567888887777777777776653
No 15
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.57 E-value=28 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=13.8
Q ss_pred cceecCccccc--cCCCCccCcCCCc
Q psy13205 77 RMKWCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 77 ~~~~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
+...|..|+.. .-.|-|||+.|++
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~ 33 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGR 33 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCC
T ss_pred cCCCCcCcCCcccCccccccCCCCCC
Confidence 34566666653 2245666776665
No 16
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=27.62 E-value=27 Score=23.04 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=9.9
Q ss_pred ecCccccc--cCCCCccCcCCCc
Q psy13205 80 WCVTCKFY--RPPRCSHCSVCNY 100 (267)
Q Consensus 80 ~C~~C~~~--kP~Rs~hC~~C~~ 100 (267)
.|..|+.. .-.|-|||+.|++
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCC
T ss_pred cccCCCCccCCccccccCCCCCE
Confidence 45555532 1234555555554
No 17
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=27.06 E-value=94 Score=17.77 Aligned_cols=27 Identities=37% Similarity=0.353 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy13205 45 IQAVITFFVLANFTLATFMDPGAIPKV 71 (267)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~dPG~ip~~ 71 (267)
++.+..+++....+-....|||--|..
T Consensus 8 Vy~vV~ffvsLFiFGfLsnDP~RNP~r 34 (38)
T 3arc_I 8 VYIVVTFFVLLFVFGFLSGDPARNPKR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGCSSSC
T ss_pred ehhHHHHHHHHHHccccCCCCCCCCCc
Confidence 334444444444445677899987763
No 18
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.55 E-value=14 Score=35.59 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=16.6
Q ss_pred cCCCccccCccccCccccc
Q psy13205 96 SVCNYCIETFDHHCPWVNN 114 (267)
Q Consensus 96 ~~C~~cv~~~DHHC~w~~~ 114 (267)
+.|..|+.-+|-||.|+++
T Consensus 505 ~sC~~Cl~ArDPYCGW~~~ 523 (667)
T 4gz8_A 505 KACAECCLARDPYCAWDGS 523 (667)
T ss_dssp SSHHHHHHTCCTTEECCSS
T ss_pred ccHHHHhcCCCCCCCCccC
Confidence 4699999999999999853
No 19
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.11 E-value=36 Score=27.55 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=12.5
Q ss_pred ccCcCCCcc--ccCccccCcccccc
Q psy13205 93 SHCSVCNYC--IETFDHHCPWVNNC 115 (267)
Q Consensus 93 ~hC~~C~~c--v~~~DHHC~w~~~C 115 (267)
..|..|++- ..+|-|||+-||.-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v 186 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQV 186 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CccCCCCCccCCcccccccCCcCCE
Confidence 455555432 23456777776653
No 20
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=23.02 E-value=38 Score=24.79 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=20.6
Q ss_pred cceecCccccccCCCCccCcC--CCc
Q psy13205 77 RMKWCVTCKFYRPPRCSHCSV--CNY 100 (267)
Q Consensus 77 ~~~~C~~C~~~kP~Rs~hC~~--C~~ 100 (267)
..+.|.+|..+-|+|+.-|+. |+.
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~ 117 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGH 117 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTS
T ss_pred ceEeeccccccCCchhhccchhhCCC
Confidence 358999999999999999994 865
No 21
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.95 E-value=50 Score=18.36 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred cceecCccccccCCCCccCcCCCcccc
Q psy13205 77 RMKWCVTCKFYRPPRCSHCSVCNYCIE 103 (267)
Q Consensus 77 ~~~~C~~C~~~kP~Rs~hC~~C~~cv~ 103 (267)
+.--|+.|...-++.+..|..|+.-+|
T Consensus 6 g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 6 GTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CceeCCcccCCCccccCEEcccCCCCC
Confidence 445689999888888889988876443
No 22
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.76 E-value=20 Score=33.50 Aligned_cols=23 Identities=35% Similarity=0.957 Sum_probs=19.8
Q ss_pred cCCCccccCccccCcccc---ccccc
Q psy13205 96 SVCNYCIETFDHHCPWVN---NCIGR 118 (267)
Q Consensus 96 ~~C~~cv~~~DHHC~w~~---~CIg~ 118 (267)
..|..|+.-+|-||.|+. .|..+
T Consensus 485 ~sC~~Cl~arDPyCgWc~~~~~C~~~ 510 (539)
T 3al9_A 485 TTCGECLSSGDPHCGWCALHNMCSRR 510 (539)
T ss_dssp CSHHHHTTSCCTTCEEEGGGTEEECG
T ss_pred CCHHHHhcCCCCCCceecCCCceech
Confidence 489999999999999995 78764
No 23
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.34 E-value=52 Score=20.07 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=13.5
Q ss_pred ccceecCcccccc---C-CCCccCcCCC
Q psy13205 76 VRMKWCVTCKFYR---P-PRCSHCSVCN 99 (267)
Q Consensus 76 ~~~~~C~~C~~~k---P-~Rs~hC~~C~ 99 (267)
...++|+.|.... + ...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 3468899887521 1 2234566554
No 24
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.02 E-value=50 Score=21.77 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=16.5
Q ss_pred ceecCccccc---cCCCCccCcCCCcccc
Q psy13205 78 MKWCVTCKFY---RPPRCSHCSVCNYCIE 103 (267)
Q Consensus 78 ~~~C~~C~~~---kP~Rs~hC~~C~~cv~ 103 (267)
...|.+|+.. ++...-+|+.|+..++
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 3468888765 3344567887776443
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.07 E-value=39 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=6.3
Q ss_pred cccCcccccccc
Q psy13205 106 DHHCPWVNNCIG 117 (267)
Q Consensus 106 DHHC~w~~~CIg 117 (267)
...||.|..-+.
T Consensus 52 ~~~CP~Cr~~~~ 63 (78)
T 2ect_A 52 HDSCPVCRKSLT 63 (78)
T ss_dssp TCSCTTTCCCCC
T ss_pred CCcCcCcCCccC
Confidence 445666655443
Done!