RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13205
(267 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.11
Identities = 49/268 (18%), Positives = 75/268 (27%), Gaps = 96/268 (35%)
Query: 8 TRYLPATF---AWFLLIGTTSLFYYYPCKYYLTHHPWVIPIQAVITFFVLANFTLA---T 61
+ W L ++ P K YL P P+ I LA++ +
Sbjct: 206 EKVFTQGLNILEW--LENPSNT----PDKDYLLSIPISCPL---IGVIQLAHYVVTAKLL 256
Query: 62 FMDPGAI-PKVNGITVRMKWCVTCK----------FYRPPRCSHCSVCNYCIETFDHHCP 110
PG + + G T + VT F+ SV F
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-------SVRKAITVLF----- 304
Query: 111 WVNNCIGRRNYRYFFFFLVTLSL-------------HMASIFAL------CLIYTFDHHC 151
+ IG R Y + + S+ M SI L + + H
Sbjct: 305 F----IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 152 PW--------VNNCIGRRNYRYFFFFLVT---LSLHMASIFALCLIYVMINKNSLSDTEA 200
P VN G +N +V+ SL+ L L S D
Sbjct: 361 PAGKQVEISLVN---GAKN------LVVSGPPQSLY-----GLNLTLRKAKAPSGLDQ-- 404
Query: 201 IISLVIMS----LIAILFIPIFGLTGFH 224
S + S + F+P+ + FH
Sbjct: 405 --SRIPFSERKLKFSNRFLPVA--SPFH 428
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 30.0 bits (66), Expect = 0.88
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 60 ATFMDPGAIPKVNGITVRMKWCVTCKFYRPPRCSHCSVCN 99
+ +DP A P+ C C F P+ +C +C
Sbjct: 162 SNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICG 201
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 26.7 bits (59), Expect = 1.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 77 RMKWCVTCKFYRPPRCSHCSVCNYC 101
+ + CV C C+ C NYC
Sbjct: 8 KEQSCVNCGREAMSECTGCHKVNYC 32
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 26.4 bits (58), Expect = 1.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 79 KWCVTCKFYRPPRCSHCSVCNYC 101
+ C C CS C+ YC
Sbjct: 14 ESCWNCGRKASETCSGCNTARYC 36
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 26.5 bits (58), Expect = 2.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 79 KWCVTCKFYRPPRCSHCSVCNYC 101
+ C C CS C+ YC
Sbjct: 18 ESCWNCGRKASETCSGCNTARYC 40
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 26.1 bits (57), Expect = 2.7
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 65 PGAIPKVNGITVRMKWCVTCKFYRPPRCSHCSVCNYC 101
+N + C C CS C+ YC
Sbjct: 2 SSGSSGINQQEDSSESCWNCGRKASETCSGCNTARYC 38
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 27.9 bits (61), Expect = 3.2
Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 20/161 (12%)
Query: 18 FLLIG-----TTSLFYYYPCKYYLTHHPWV-IPIQAVITFFVLANFTLATFMDPGAIPKV 71
F ++G T+SL YL+ HP + IP + FF F PG +
Sbjct: 11 FFIVGAAKCGTSSLD------RYLSQHPDIYIPPKKEAHFF-SIPDFPERFTGPGD-EGM 62
Query: 72 NGITVRMKWCVTCKFYRPPRCSHCSVCNYCIETFDHHCPWVNNCIGRRNYRYFFFFL--- 128
N T+R + F +V + + + +
Sbjct: 63 NLYTIRDEDAYMRLF--DGVRGERAVGEASVFYLFYPGTAQRMYDAYPDAKILIMLRNPV 120
Query: 129 -VTLSLHMASIFALCLIYTFDHHCPWVNNCIGRRNYRYFFF 168
S +M + +F I + +++
Sbjct: 121 DRAFSAYMHLVRDERETLSFRESLAKEEERIRQHYEPLWYY 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 5.6
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 20/52 (38%)
Query: 87 YRPPRCSHCSVCNYCIETFDHHCPWVNNCIGRRNYRYFFFFLVTLSLHMASI 138
Y P+ + + P+++ YF+ + H+ +I
Sbjct: 453 YNIPKT-------FDSDDL--IPPYLDQ--------YFYSHIG---HHLKNI 484
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 26.8 bits (60), Expect = 8.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 200 AIISLVIMSLIAILFIPIFGLTG 222
ISL+I I + FIPIF L G
Sbjct: 457 LFISLLI---ITLSFIPIFTLEG 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.335 0.146 0.528
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,359,494
Number of extensions: 252788
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 50
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.8 bits)