RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13205
         (267 letters)



>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
           protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 25.7 bits (56), Expect = 0.92
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 71  VNGITVRMKWCVTCKFYRPPRCSHCSVCNYC 101
           +N      + C  C       CS C+   YC
Sbjct: 1   INQQEDSSESCWNCGRKASETCSGCNTARYC 31


>d1pcea_ g.68.1.1 (A:) PEC-60 peptide {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 60

 Score = 26.1 bits (57), Expect = 1.1
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 84  CKFYRPPRCSHCSVCNYCIETFDHHC 109
             F R P C H +    C   +D  C
Sbjct: 3   QVFSRMPICEHMTESPDCSRIYDPVC 28


>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 52

 Score = 24.4 bits (53), Expect = 3.1
 Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)

Query: 88  RPPRCSHCSVCNYCIETFDH--HCPWVN 113
            PP C+ C      I    H  +C +  
Sbjct: 6   TPPNCARCRNHGLKITLKGHKRYCKFRY 33


>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 119

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 1  MPKCHLKTRYLPATFAWFLLIGTTSLFYYYPCKYYLTHHPWVIPIQAV 48
          + K    +        ++ L       +    K   +    +  I+ +
Sbjct: 17 LLKVKSSSWRR---ERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDI 61


>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 31

 Score = 23.5 bits (50), Expect = 5.2
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 73 GITVRMKWCVTCKFYRPPRCSHCSVCN 99
          G T  M  C  C F   P   HC +C+
Sbjct: 1  GSTSAMWACQHCTFMNQPGTGHCEMCS 27


>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
           [TaxId: 1423]}
          Length = 195

 Score = 25.1 bits (53), Expect = 9.0
 Identities = 8/138 (5%), Positives = 23/138 (16%)

Query: 85  KFYRPPRCSHCSVCNYCIETFDHHCPWVNNCIGRRNYRYFFFFLVTLSLHMASIFALCLI 144
                   +  S      +T + +               F     +       +    + 
Sbjct: 42  SLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYIT 101

Query: 145 YTFDHHCPWVNNCIGRRNYRYFFFFLVTLSLHMASIFALCLIYVMINKNSLSDTEAIISL 204
              +         +              L  +   +  +      I K        ++  
Sbjct: 102 TREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQ 161

Query: 205 VIMSLIAILFIPIFGLTG 222
            +        I     T 
Sbjct: 162 TLNIDPEDELILFSSETK 179


>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
           protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 23.1 bits (49), Expect = 9.5
 Identities = 8/28 (28%), Positives = 9/28 (32%)

Query: 74  ITVRMKWCVTCKFYRPPRCSHCSVCNYC 101
           +      C  C      RCS C    YC
Sbjct: 4   VAPERPRCAYCSAEASKRCSRCQNEWYC 31


>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 166

 Score = 24.6 bits (52), Expect = 10.0
 Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 8/108 (7%)

Query: 22  GTTSLFYYYPCKYYLTHHPWVIPIQAVITFFVLANFTLATFMDPGAIPKVNGITVRMKWC 81
           G ++L       +++  +   I                    +   +  ++         
Sbjct: 15  GKSALTIQLIQNHFVDEYDPTIEDSYRKQVV--------IDGETCLLDILDTAGQEEYSA 66

Query: 82  VTCKFYRPPRCSHCSVCNYCIETFDHHCPWVNNCIGRRNYRYFFFFLV 129
           +  ++ R      C       ++F+    +       ++       LV
Sbjct: 67  MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.146    0.528 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,136,905
Number of extensions: 54249
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 49
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.5 bits)