Query psy13206
Match_columns 478
No_of_seqs 163 out of 1756
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 22:51:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.5E-52 8.6E-57 423.4 32.0 424 2-443 20-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.1E-31 3.6E-36 268.6 14.0 358 29-421 57-430 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.5E-29 5.1E-34 252.1 26.3 329 29-413 55-421 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 8.3E-28 2.9E-32 243.2 26.7 396 28-431 47-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 3.8E-26 1.3E-30 222.8 7.7 320 29-403 29-355 (375)
6 2xut_A Proton/peptide symporte 99.9 5.9E-23 2E-27 209.4 24.4 136 30-165 49-193 (524)
7 2cfq_A Lactose permease; trans 99.9 1.8E-25 6.2E-30 221.2 3.2 356 29-432 37-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.2 2.6E-11 8.9E-16 120.4 10.9 149 273-430 63-212 (451)
9 2gfp_A EMRD, multidrug resista 99.1 3.7E-10 1.3E-14 109.3 12.7 142 277-431 40-181 (375)
10 3o7q_A L-fucose-proton symport 99.1 1.8E-09 6.1E-14 106.7 16.7 138 255-402 44-182 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.0 5.1E-09 1.8E-13 105.1 16.1 137 277-426 59-198 (491)
12 2xut_A Proton/peptide symporte 98.9 1.7E-08 6E-13 102.2 16.7 137 275-423 57-197 (524)
13 4gc0_A D-xylose-proton symport 98.9 2.5E-08 8.5E-13 100.1 16.8 145 281-428 64-223 (491)
14 2cfq_A Lactose permease; trans 98.8 2E-09 6.7E-14 106.0 5.6 141 34-174 258-404 (417)
15 2g9p_A Antimicrobial peptide l 41.6 7.9 0.00027 19.4 0.6 14 54-67 2-15 (26)
16 4dve_A Biotin transporter BIOY 28.5 83 0.0028 26.3 5.2 26 41-66 99-124 (198)
17 1cmk_I CAMP-dependent protein 23.2 16 0.00055 19.2 -0.1 10 59-68 9-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.5e-52 Score=423.42 Aligned_cols=424 Identities=21% Similarity=0.363 Sum_probs=317.8
Q ss_pred cccceeecchhhhhhhcccccccCCCcc--cccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHH
Q psy13206 2 AGTSMGWPSPVLRLFKSNITDMFRNETY--IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISW 79 (478)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~ 79 (478)
+||.+|+|..........+.+.+..+.+ .+.++.+.||++|++++|.++|++++|+++||+|||++++++.+++.+++
T Consensus 20 g~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~ 99 (491)
T 4gc0_A 20 GGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISG 99 (491)
T ss_dssp HHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4677888877665544344344433322 24456678999999999999999999999999999999999999999999
Q ss_pred HHHH------------------HhhhHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHh
Q psy13206 80 LLVI------------------FTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEY 141 (478)
Q Consensus 80 ~~~~------------------~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~ 141 (478)
++++ +++|+++++++|+++|+|.|+..+++++|++|++|+++||+..++.+.+...|.+++.
T Consensus 100 i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 100 VGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp HHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 9999 4889999999999999999999999999999999999999999999999999988776
Q ss_pred hcCCc------------cchhhHHHHHHHHHHHHHHhhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHH
Q psy13206 142 TVGPY------------VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELS 209 (478)
Q Consensus 142 ~~g~~------------~~~~~~~~~~~~~~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 209 (478)
.++.. ..||..+.....++++.++...++||||||+..|+|.||+.+.+++.++... ..++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~-----~~~~~~ 254 (491)
T 4gc0_A 180 CVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL-----ATQAVQ 254 (491)
T ss_dssp HHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred hcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch-----hHHHHH
Confidence 65421 2345555555566667777788899999999999999999999987753211 111111
Q ss_pred HHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHh
Q psy13206 210 NIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILVFLST 289 (478)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (478)
+.++..+++++.. .....+ .+++..+.......+++.+...+..|.+......+...........+.++..++++
T Consensus 255 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4gc0_A 255 EIKHSLDHGRKTG-GRLLMF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFT 329 (491)
T ss_dssp HHHHHHHHHHHHT-THHHHS----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhh-hHHHHh----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHH
Confidence 1111111111111 111111 12344445555566667777777778887776655543344455666778888999
Q ss_pred hhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCc
Q psy13206 290 FPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPS 369 (478)
Q Consensus 290 ~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~ 369 (478)
+++++++||+|||+.++.+..+++++++.++...... ...+........+..+++.+.+|..+.+++|++|+
T Consensus 330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 9999999999999999988888887776665443221 12234455556667778888889999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHhhh
Q psy13206 370 NTRGLAGGVTTITLTVISFLVMKMYQVICDH------YGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKH 443 (478)
Q Consensus 370 ~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~------~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~~~~~~~~~~~~~ 443 (478)
+.|+++.|+++..+++++++++.+++.+.+. .+....++++++.+++.++++++++||||||++||+|+.++++
T Consensus 402 ~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 402 AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 9999999999999999999999998876432 3444567888888888898899999999999999998776543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=1.1e-31 Score=268.63 Aligned_cols=358 Identities=15% Similarity=0.162 Sum_probs=236.9
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF----TKHVYVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~----a~~~~~l~~~R~l~G~~~g~ 104 (478)
++ .++.+.+++.+++.++..++++++|+++||+|||+++.++.++++++.+++++ ++|++.++++|+++|++.|.
T Consensus 57 ~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 135 (451)
T 1pw4_A 57 QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 135 (451)
T ss_dssp ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhh
Confidence 35 78899999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cc-hhhHHHHHHHHHHHH-HHhhccccCChHHHH
Q psy13206 105 VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VD-YDTLAYVSLVIPVVF-LMTFIWMPESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~-~~~~~~~~~~~~~~~-~~~~~~~pESp~~l~ 178 (478)
..+...+++.|++|+++|+++.++.+....+|.++++.++.. .+ ||+.+++...+.++. ++.+.++||+|++..
T Consensus 136 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (451)
T 1pw4_A 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 215 (451)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcC
Confidence 999999999999999999999999999999998888777643 46 998877766655543 344566899986432
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchh-HHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDD-FMDIISTPANRRSLLIVQIVAVADVISGMSAVL 257 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (478)
.+.+.+ .+++ ...+. +...+++...+.. .++.++++ .++..... ......+...+.
T Consensus 216 ~~~~~~-----------~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ 272 (451)
T 1pw4_A 216 LPPIEE-----------YKND----YPDDY---NEKAEQELTAKQIFMQYVLPNK----LLWYIAIA-NVFVYLLRYGIL 272 (451)
T ss_dssp CCSCTT-----------TCCC--------------------CCTHHHHHHTSSCH----HHHHHHHH-HHHHHHHHHHHH
T ss_pred CCChhh-----------hccc----ccccc---hhhhhcccccccchHHHHHcCH----HHHHHHHH-HHHHHHHHHHHH
Confidence 111000 0000 00000 0000011111111 23333322 22221111 111222334445
Q ss_pred HhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhc--CCchhHHHhhHHHH-HHHHHHHHHHhhcccccccc
Q psy13206 258 PYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRT--GRRPLLLVSCFGSG-ISQLIAGTYYLLSENYTVDL 333 (478)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~--GRr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~ 333 (478)
.+.+.++.+..+ +............++.+++.++.+++.||+ |||+.+..+..+.. ++.+.+ .. ..
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~------ 342 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY---WM-NP------ 342 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT---TS-CC------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---HH-hc------
Confidence 566655554322 211223344455667788899999999999 99988776655544 332221 11 10
Q ss_pred cccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHHhcccchHHHHHHH
Q psy13206 334 SKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTV-ISFLVMKMYQVICDHYGVYLNFYIYSL 412 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~l-g~~i~~~~~~~l~~~~g~~~~~~~~~~ 412 (478)
....+.........+++. .+..+..+.+..|.+|++.||++.|+.+....+ +..+++.+.+.+.+..+....+++.++
T Consensus 343 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp TTCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH-hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 001122122222222211 122344567889999999999999999999999 999999999999998887666766666
Q ss_pred HHHHHHHHh
Q psy13206 413 GCIICGVLV 421 (478)
Q Consensus 413 ~~~l~~~~~ 421 (478)
..++..++.
T Consensus 422 ~~~~~~~~~ 430 (451)
T 1pw4_A 422 GSILAVILL 430 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.5e-29 Score=252.12 Aligned_cols=329 Identities=14% Similarity=0.124 Sum_probs=227.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLV---IFTKHVYVLYVVRFMQGLAMGIV 105 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~---~~a~~~~~l~~~R~l~G~~~g~~ 105 (478)
++++++.+.+++.+++.+++.+++++.|+++||+|||++++++.++++++++++ ++++|++.++++|+++|++.|..
T Consensus 55 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~ 134 (438)
T 3o7q_A 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134 (438)
T ss_dssp HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHh
Confidence 467899999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred hhhhhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCccc------------------------------hhhHHHH
Q psy13206 106 FTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVD------------------------------YDTLAYV 155 (478)
Q Consensus 106 ~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~~~------------------------------~~~~~~~ 155 (478)
.+....++.|+.|+++|++..++.+....+|.++++.++..+. ||+.+++
T Consensus 135 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999988888765422 7777655
Q ss_pred HHHHHHHHHH--hhccccCChHHHHHcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcc
Q psy13206 156 SLVIPVVFLM--TFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPA 233 (478)
Q Consensus 156 ~~~~~~~~~~--~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
...+..+..+ .+...||+++.. .+++++ ++...++++.++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~p~~~~~~------------------~~~~~~-----------------~~~~~~~~~~~~~~~ 259 (438)
T 3o7q_A 215 IVAIVLLVALLIMLTKFPALQSDN------------------HSDAKQ-----------------GSFSASLSRLARIRH 259 (438)
T ss_dssp HHHHHHHHHHHHHHCCCCCCTTTC------------------CCCSST-----------------TSHHHHHHHHTTCSH
T ss_pred HHHHHHHHHHHHHHHcCCcccccc------------------cccccc-----------------cchhhhHHHHHhChH
Confidence 4443333322 233457765310 000000 011123444555443
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhHHHH-HHhc-CCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHH
Q psy13206 234 NRRSLLIVQIVAVADVISGMSAVLPYASST-FART-EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFG 311 (478)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~ 311 (478)
.+....... ...........+.+.+ +.+. +.+............++.+++.++.++++||+|||+.+..+.++
T Consensus 260 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 334 (438)
T 3o7q_A 260 WRWAVLAQF-----CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 332222111 1112233444566665 5444 22322233444555677788999999999999999998888777
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
.+++.+.... .+ .....+......++++ ...|..+.+..|.+|++ |+++.++.. .+.+++.++|
T Consensus 335 ~~~~~~~~~~----~~---------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~ 398 (438)
T 3o7q_A 335 AMALCLISAF----AG---------GHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVT 398 (438)
T ss_dssp HHHHHHHHHH----CC---------HHHHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHH----cC---------CcHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHH
Confidence 6665444321 11 0111222222222222 23456677878999977 899988877 6789999999
Q ss_pred HHHHHHHHhcc-cchHHHHHHHH
Q psy13206 392 KMYQVICDHYG-VYLNFYIYSLG 413 (478)
Q Consensus 392 ~~~~~l~~~~g-~~~~~~~~~~~ 413 (478)
.+.+.+.+..| ....+++.++.
T Consensus 399 ~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 399 PVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp HHHHHHHHHHTSSGGGGHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999988 65666554433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=8.3e-28 Score=243.24 Aligned_cols=396 Identities=14% Similarity=0.077 Sum_probs=226.5
Q ss_pred cccccCcchhhHHHHHHHHHHHhhhhhhhhhhcc-cCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhh
Q psy13206 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDY-VGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVF 106 (478)
Q Consensus 28 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr-~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~ 106 (478)
.+++.++.+.+++.+++.++..+++++.|+++|| +|||+++.++.++..++.+++++++|++.++++|+++|++.|...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3578899999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccc--chhhhHHHHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHHhhcc-----ccCChH
Q psy13206 107 TVAPMYIGEISGAKC--RGALSTFFIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLMTFIW-----MPESPY 175 (478)
Q Consensus 107 ~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~-----~pESp~ 175 (478)
+...+++.|++|+++ |+...+..+...++|..+++.++. ..+||+.+++.....++..+...+ .++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 666777777888888777776654 357888887665443333322221 111100
Q ss_pred HHHHcCCHHHHHHHHHH---------------HhCCCCCchhhHHH-HHHHHHHHH--HHhhccchhHHHhhcCcchhHH
Q psy13206 176 FLIMKGRDVDARKSLFW---------------LRGGRESSKDKINL-ELSNIKQDV--EREMKLSDDFMDIISTPANRRS 237 (478)
Q Consensus 176 ~l~~~~~~~~a~~~l~~---------------~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (478)
--....+.++.++..++ ......+..+.... ......... ...........+..+ ++..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 284 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEH-LRVVS- 284 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------CTT-
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHH-HHHHH-
Confidence 00011123333333222 01111111110000 000000000 000000000000000 00111
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhHHHHHHhcCC-CCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHH-----HhhHH
Q psy13206 238 LLIVQIVAVADVISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLL-----VSCFG 311 (478)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~-----~~~~~ 311 (478)
........ ......+.....+.+....+... +............+..+++..+.+++.||+|||+... .+.++
T Consensus 285 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAA-VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHH-HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 11111010 10111111112223333333222 2234455556677778888889999999999997654 44444
Q ss_pred HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHH
Q psy13206 312 SGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVM 391 (478)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~ 391 (478)
.+++.+.+........ .+.....+........+++.. ....+..+.+..|.+|++.||++.|+.+....+|..+++
T Consensus 364 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG---TSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTHHHHHHCC---CCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333322111100 000011122222222222222 223566778999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 392 KMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 392 ~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
.+.+.+.+. +....+.++++.+++.+++.+++.|+++++
T Consensus 440 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 440 QLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988776543 444566777777777777776666666543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=3.8e-26 Score=222.79 Aligned_cols=320 Identities=17% Similarity=0.142 Sum_probs=205.3
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTV 108 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~ 108 (478)
+++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.++++|++.++++|+++|++.+...+.
T Consensus 29 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 108 (375)
T 2gfp_A 29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM 108 (375)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccchhhhHHHHHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHH-hhccccCChHHHHHcCCH
Q psy13206 109 APMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLM-TFIWMPESPYFLIMKGRD 183 (478)
Q Consensus 109 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~-~~~~~pESp~~l~~~~~~ 183 (478)
...++.|+.|+++|++..+..+....+|..+++.++.. .+||..+++.....++..+ ...++||+|++. ++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 184 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP- 184 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC-
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc-
Confidence 99999999999999999999999988888887776543 3688777766655555444 455678887421 00
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy13206 184 VDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASST 263 (478)
Q Consensus 184 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (478)
++ +...++++.+++|..+..... . .....+...+..+.+.+
T Consensus 185 -------------~~---------------------~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~ 225 (375)
T 2gfp_A 185 -------------RT---------------------RLLTSYKTLFGNSGFNCYLLM----L-IGGLAGIAAFEACSGVL 225 (375)
T ss_dssp -------------CC---------------------CTTTCSTHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHCSCS
T ss_pred -------------cc---------------------cHHHHHHHHhcCcchHHHHHH----H-HHHHHHHHHHHHHHHHH
Confidence 00 001122233322221111111 1 11111222222222222
Q ss_pred HHh-cCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHH-HHHHHHHHHHHHhhcccccccccccchHHH
Q psy13206 264 FAR-TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFG-SGISQLIAGTYYLLSENYTVDLSKFNWIPL 341 (478)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (478)
+.+ .+.+............++.+++.++.+++.||.+||. ..+... ...+......... .. ...+...
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~ 295 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-GV-------MNVWTLL 295 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-HH-------HHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-cc-------ccHHHHH
Confidence 111 1111011122233345566677777788888887732 222221 1111110000000 00 0011111
Q ss_pred HHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy13206 342 ISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGV 403 (478)
Q Consensus 342 ~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~ 403 (478)
.....+++.++. ..+....+..|.+| +.||++.|+.+....++..+++.+.+.+.+..+.
T Consensus 296 ~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 296 VPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp HHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 222223333332 34666778889998 8999999999999999999999998888765543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=5.9e-23 Score=209.37 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=119.3
Q ss_pred cccCcchhhHHHHHHHHHHHhhhhhhhhhhccc-CchhHHHhhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhhh
Q psy13206 30 IEMTSAESSWVVSIIELGNLVTPIPIGFLVDYV-GRKPCLLTTGPLYIISWLLVIFTK-HVYVLYVVRFMQGLAMGIVFT 107 (478)
Q Consensus 30 ~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~-GRr~~l~~~~~l~~i~~~~~~~a~-~~~~l~~~R~l~G~~~g~~~~ 107 (478)
.+.++.+.+++.+++.++..+++++.|+++||+ |||+++.++.++..++.++.++++ |++.++++|+++|++.|...+
T Consensus 49 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 49 EELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 338999999999999999999999999999999 999999999999999999999999 999999999999999999999
Q ss_pred hhhhhhhhccccccchhhhHH---HHHHHHHhHHHHhhcCC----ccchhhHHHHHHHHHHHHHH
Q psy13206 108 VAPMYIGEISGAKCRGALSTF---FIGMLNTGILLEYTVGP----YVDYDTLAYVSLVIPVVFLM 165 (478)
Q Consensus 108 ~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~ 165 (478)
...+++.|++|+++|++..+. .....++|..+++.++. ..+|++.+++.....++..+
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999877666 77788888888877764 34788877766555444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=1.8e-25 Score=221.24 Aligned_cols=356 Identities=11% Similarity=0.062 Sum_probs=198.5
Q ss_pred ccccCcchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHH---HHHHhhhH-HHHHHHHHHHhhhhhh
Q psy13206 29 YIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWL---LVIFTKHV-YVLYVVRFMQGLAMGI 104 (478)
Q Consensus 29 ~~~~~~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~---~~~~a~~~-~~l~~~R~l~G~~~g~ 104 (478)
+++.++.+.|++.+++.+++.++++++|+++||+|||++++++..++.+++. ..++++.. ..+..+|++.|++.|.
T Consensus 37 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 116 (417)
T 2cfq_A 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116 (417)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999988887765322 12333322 1345677888887777
Q ss_pred hhhhhhhhhhhcccc--ccchhhhHHHHHHHHHhHHHHhhcCCc---cchhhHHHHHHHHHHHHHHhhccc-cCChHHHH
Q psy13206 105 VFTVAPMYIGEISGA--KCRGALSTFFIGMLNTGILLEYTVGPY---VDYDTLAYVSLVIPVVFLMTFIWM-PESPYFLI 178 (478)
Q Consensus 105 ~~~~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~-pESp~~l~ 178 (478)
.++.....+.++.++ ++|+...+.......+|..+++.++.. .+|+..+++.....++..+...+. ||+|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 193 (417)
T 2cfq_A 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--- 193 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---
T ss_pred HHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc---
Confidence 666666666666654 345554444443444444444433321 357766665444333333333333 45432
Q ss_pred HcCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHhhccchhHHHhhcCcchhHHHHHHHHHHHHhhhhhhhHHHH
Q psy13206 179 MKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLP 258 (478)
Q Consensus 179 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
+.+.++ .+++.. ++....+.++.++++..+........ ....+..+..
T Consensus 194 -~~~~~~----------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 241 (417)
T 2cfq_A 194 -SATVAN----------AVGANH----------------SAFSLKLALELFRQPKLWFLSLYVIG-----VSCTYDVFDQ 241 (417)
T ss_dssp -SSCSSS----------SSSSCC----------------CCCCHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred -cccccc----------cccccc----------------ccccHHHHHHHhcCCchhhHHHHHHH-----HHHHHHHHHH
Confidence 000000 000000 00001123344443332221111111 1111112222
Q ss_pred hHHHHHHhcCCCC-CCch---hhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 259 YASSTFARTEGSL-ITPD---ECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
+.+.++.+..... .... ....+..+...++.++.++++||+|||+++..+.++.++..+... . .+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~---~-~~------- 310 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS---F-AT------- 310 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT---T-CC-------
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH---H-hc-------
Confidence 2333333221100 0111 222333455667888999999999999988777666555433321 0 10
Q ss_pred ccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT-TITLTVISFLVMKMYQVICDHYGVYLNFYIYSLG 413 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~-~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~ 413 (478)
..+..........+.+. ...+..+.+++|.+|++.||++.++. +...++|+.++|.+.+.+.+..+....|.+.++.
T Consensus 311 -~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 311 -SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp -SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 11111111111122111 11223467899999999999999995 7888899999999999988877755566666766
Q ss_pred HHHHHHHhheeecCCCCCC
Q psy13206 414 CIICGVLVYFIIPESKGKT 432 (478)
Q Consensus 414 ~~l~~~~~~~~~pEt~~~~ 432 (478)
.++..++.+++.||++..+
T Consensus 389 ~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHhhhcCCCchH
Confidence 6666666666778766444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.23 E-value=2.6e-11 Score=120.43 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=106.4
Q ss_pred CchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Q psy13206 273 TPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYS 352 (478)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (478)
..........++..++.++.|+++||+|||+.++.+.++.+++.++........++ .+..++.....+++.+
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGWFQG 134 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc--------HHHHHHHHHHHHHHhh
Confidence 33444455667777889999999999999999999888888776665431100111 1111222222222222
Q ss_pred hcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHhheeecCCCC
Q psy13206 353 IGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-VYLNFYIYSLGCIICGVLVYFIIPESKG 430 (478)
Q Consensus 353 ~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~l~~~~~~~~~pEt~~ 430 (478)
...+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..+ +...+++.++..++..++.++++||++.
T Consensus 135 -~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 135 -MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp -HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred -hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 2335566789999999999999999999999999999999998888888 8888888887777777777777888654
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=3.7e-10 Score=109.30 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhccc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG 356 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 356 (478)
......+...++.++.|+++||+|||+.+..+.++.++..+...... + .+.........+++.+ ...
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~--------~~~l~~~~~l~g~~~~-~~~ 106 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS----S--------LTVLIAASAMQGMGTG-VGG 106 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----c--------HHHHHHHHHHHHHHHH-hhh
Confidence 33445666778899999999999999999988888777766543211 0 0111111111111111 123
Q ss_pred ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeecCCCCC
Q psy13206 357 PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGK 431 (478)
Q Consensus 357 ~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~pEt~~~ 431 (478)
+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+.+..++...+++.++..++..+..++++||++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 456678899999999999999999999999999999998887777777777777766666666566778887543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.10 E-value=1.8e-09 Score=106.70 Aligned_cols=138 Identities=7% Similarity=-0.058 Sum_probs=88.7
Q ss_pred HHHHhHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccccccccc
Q psy13206 255 AVLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLS 334 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (478)
...+..+....+.+.+............++..++.++.|+++||+|||+.++.+.++.+++.++...... .+
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~------- 115 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-IM------- 115 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-TT-------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-cc-------
Confidence 3344445444443333222333444456666788999999999999999999998888877665422111 11
Q ss_pred ccchHHHHHHHHHHHHHHhcccccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q psy13206 335 KFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC-DHYG 402 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~-~~~g 402 (478)
..+..++.....+++.+ ...+....+.+|.+|++.|+++.++.+....+|..+++.+.+.+. +..+
T Consensus 116 -~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 116 -NYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp -CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred -cHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11111111122222221 123455678899999999999999999999999999999988887 4443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.01 E-value=5.1e-09 Score=105.14 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhhhhhHhhhh-cCCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHhcc
Q psy13206 277 CTLLLGILVFLSTFPTAFLVDR-TGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 277 ~~~~~~~~~~~~~~~~g~l~Dr-~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
......++..+++++.|+++|| +|||+++..+.++.+++.+.... .+ ..+...+.....+++.+ ..
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~l~g~~~~-~~ 125 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----PF--------GASALFGSIILIIIGTG-FL 125 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----CC--------STTHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----hh--------hHHHHHHHHHHHHHHHH-hc
Confidence 3344566677889999999999 89999999888877776655431 11 11222222222222222 12
Q ss_pred cccchhhhcccCCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhheeec
Q psy13206 356 GPLVPTLQGEFFPSNT--RGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIP 426 (478)
Q Consensus 356 g~~~~~~~~El~p~~~--Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~p 426 (478)
.+....+.+|.+|++. |+++.++.+....+|..++|.+.+.+.+..++...|++.++..++..+..++..|
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556778999999998 7778888889999999999999999999888887777766555554444433333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=1.7e-08 Score=102.16 Aligned_cols=137 Identities=17% Similarity=0.235 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHHHhhhhhHhhhhc-CCchhHHHhhHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHh
Q psy13206 275 DECTLLLGILVFLSTFPTAFLVDRT-GRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSI 353 (478)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~g~l~Dr~-GRr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (478)
........+...++.++.|+++||+ |||+++..+.++.+++.++.... + ...+.........+++.+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~l~g~~~~- 124 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----E-------HSVQGFYTGLFLIALGSG- 124 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----S-------SCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----c-------ccHHHHHHHHHHHHHhcc-
Confidence 3444455667778899999999999 99999988877777765554321 0 001111111122222221
Q ss_pred cccccchhhhcccCCccccchhhHH---HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhe
Q psy13206 354 GLGPLVPTLQGEFFPSNTRGLAGGV---TTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYF 423 (478)
Q Consensus 354 g~g~~~~~~~~El~p~~~Rg~~~g~---~~~~~~lg~~i~~~~~~~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 423 (478)
...+....+.+|.+|++.|+++.+. .+....+|..++|.+.+.+.+..++...|++.++..++..+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2335667789999999999877666 888899999999999988888888777777766555554444333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.91 E-value=2.5e-08 Score=100.06 Aligned_cols=145 Identities=19% Similarity=0.140 Sum_probs=85.8
Q ss_pred HHHHHHHHhhhhhHhhhhcCCchhHHHhhHHHHHHHHHHHHHHhhccc----cccc-ccccchHHHHHHHHHHHHHHhcc
Q psy13206 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSEN----YTVD-LSKFNWIPLISITCFAVIYSIGL 355 (478)
Q Consensus 281 ~~~~~~~~~~~~g~l~Dr~GRr~~l~~~~~~~~i~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~g~ 355 (478)
..++.++|+++.|+++||+|||+.++.+.++..++.+..+........ .... ....++. .+....+..+++.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~---~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP---EFVIYRIIGGIGV 140 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH---HHHHHHHHHHHHH
Confidence 456678899999999999999999999888887776654421100000 0000 0001111 2223334444433
Q ss_pred c---ccchhhhcccCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhheee
Q psy13206 356 G---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG-------VYLNFYIYSLGCIICGVLVYFII 425 (478)
Q Consensus 356 g---~~~~~~~~El~p~~~Rg~~~g~~~~~~~lg~~i~~~~~~~l~~~~g-------~~~~~~~~~~~~~l~~~~~~~~~ 425 (478)
| +..+.+.+|..|++.|+...++.+....+|..+.+.+........+ .+...........+..++..++.
T Consensus 141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTV 220 (491)
T ss_dssp HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcC
Confidence 3 4567899999999999999999988887777766665544443221 11111222223333344455678
Q ss_pred cCC
Q psy13206 426 PES 428 (478)
Q Consensus 426 pEt 428 (478)
||+
T Consensus 221 peS 223 (491)
T 4gc0_A 221 PES 223 (491)
T ss_dssp CCC
T ss_pred CCC
Confidence 997
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.84 E-value=2e-09 Score=105.95 Aligned_cols=141 Identities=10% Similarity=0.143 Sum_probs=104.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhcccCchhHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy13206 34 SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYI 113 (478)
Q Consensus 34 ~~~~~~~~s~~~~g~~ig~~~~G~l~Dr~GRr~~l~~~~~l~~i~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 113 (478)
..+.+++.++..++.+++.++.|+++||+|||+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888999999999999999999999998888888877777788888899999999999888888888999
Q ss_pred hhccccccchhhhHHH-HHHHHHhHHHHhhcCCc----cchhhHHHHHHHHHHHHHH-hhccccCCh
Q psy13206 114 GEISGAKCRGALSTFF-IGMLNTGILLEYTVGPY----VDYDTLAYVSLVIPVVFLM-TFIWMPESP 174 (478)
Q Consensus 114 ~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~~~g~~----~~~~~~~~~~~~~~~~~~~-~~~~~pESp 174 (478)
.|..|++.||...+.. +....+|..+++.++.. .+++..+.......++..+ .+...||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999877763 55555666655555432 2344444444433333333 233455543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=41.62 E-value=7.9 Score=19.41 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.2
Q ss_pred hhhhhhcccCchhH
Q psy13206 54 PIGFLVDYVGRKPC 67 (478)
Q Consensus 54 ~~G~l~Dr~GRr~~ 67 (478)
++|.+..+||||-+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888899999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=28.47 E-value=83 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhhhhhhhcccCchh
Q psy13206 41 VSIIELGNLVTPIPIGFLVDYVGRKP 66 (478)
Q Consensus 41 ~s~~~~g~~ig~~~~G~l~Dr~GRr~ 66 (478)
+.-|.+|..+++.+.|+++||..+++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~~ 124 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKITT 124 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccc
Confidence 35678888889999999999876543
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=23.16 E-value=16 Score=19.18 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=7.9
Q ss_pred hcccCchhHH
Q psy13206 59 VDYVGRKPCL 68 (478)
Q Consensus 59 ~Dr~GRr~~l 68 (478)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 6888998865
Done!