RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13206
(478 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 192 bits (490), Expect = 4e-56
Identities = 124/458 (27%), Positives = 222/458 (48%), Gaps = 33/458 (7%)
Query: 1 MAGTSMGWPSPVLRLFKSNITDMFRNETYI------EMTSAESSWVVSIIELGNLVTPIP 54
+ G G+ + V+ F + F+ + ++ S +VSI +G L+ +
Sbjct: 7 LGGFLFGYDTGVIGAF-LTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLF 65
Query: 55 IGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK--HVYVLYVVRFMQGLAMGIVFTVAPMY 112
G L D GRK LL L++I LL F K Y+L V R + GL +G + + PMY
Sbjct: 66 AGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMY 125
Query: 113 IGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDY-------DTLAYVSLVIPVVFLM 165
I EI+ K RGAL + + + GIL+ +G ++ + V ++ L+
Sbjct: 126 ISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLI 185
Query: 166 TFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDF 225
+++PESP +L++KG+ +AR L LRG + ++ E ++++ VE E +
Sbjct: 186 GLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQE-EKDSLERSVEAEKASWLEL 244
Query: 226 MDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSLITPDECTLLLGILV 285
R+ LL+ ++ + ++G++A+ Y+ + F T G L T+++G++
Sbjct: 245 ---FRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF-ETLG-LSDSLLVTIIVGVVN 299
Query: 286 FLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISIT 345
F+ TF FLVDR GRRPLLL+ G I L+ G L ++K +++I
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG-------VAKSKGAGIVAIV 352
Query: 346 CFAV---IYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYG 402
+ +++G GP+ + E FP R A + T + +FL+ ++ +I G
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG 412
Query: 403 VYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEEL 440
Y+ F +++ ++ + V+F +PE+KG+T +I E
Sbjct: 413 GYV-FLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 182 bits (465), Expect = 3e-52
Identities = 117/419 (27%), Positives = 197/419 (47%), Gaps = 21/419 (5%)
Query: 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK---HVY 89
+S+ VVSI +G + + G+L D GRK LL L++I +L+ V
Sbjct: 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVE 128
Query: 90 VLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPY--- 146
+L V R + G+ +GI + PMY+ EI+ RGAL++ + + GIL+ Y G
Sbjct: 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188
Query: 147 ----VDYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKD 202
+ + + L+ + + ++PESP +L+ KGR +ARKSL LRG S +D
Sbjct: 189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGT--SGED 246
Query: 203 KI---NLELSNIKQDVERE--MKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVL 257
K LEL +IK+ +E+ ST RR L + ++ +G++A++
Sbjct: 247 KELLDELELIDIKRSIEKRSVQPSWGSLFS--STRRIRRRLFLGVVLQWFQQFTGINAIM 304
Query: 258 PYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQL 317
Y+ + F S ++++G + F TF FLVDR GRRPLLL+ G I
Sbjct: 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF 364
Query: 318 IAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGG 377
+ G T + ++ I F +++G GP+ + E FP + R
Sbjct: 365 VLGILGASFV--TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422
Query: 378 VTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQI 436
+ + +F+V ++ + + GV F + ++ + VYF +PE+KG+T +I
Sbjct: 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 108 bits (272), Expect = 1e-25
Identities = 97/423 (22%), Positives = 178/423 (42%), Gaps = 64/423 (15%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWL------LVIFTK----HVYVLYVV--RFMQGLAMG 103
G+ + GR+ L L+ IS L + YV V R + G+ +G
Sbjct: 76 GYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVG 135
Query: 104 IVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG---------PYVDYDTLAY 154
+ ++PMYI EI+ A RG L +F + G L+ Y V +++ D Y
Sbjct: 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRY 195
Query: 155 V--SLVIP-VVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNI 211
+ S IP ++FLM ++PE+P +L+ +G+ A L + G L I
Sbjct: 196 MFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-----NTLATQALQEI 250
Query: 212 KQDVEREMKLSDDFMDIISTPANRRSLLIVQI-VAVADVISGMSAVLPYASSTF----AR 266
K ++ K + ++++ + ++V G++ VL YA F A
Sbjct: 251 KHSLDHGRKTGGKLLMFGVG------VIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304
Query: 267 TEGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGT-YYLL 325
T+ +L+ T+++G++ T VD+ GR+PL ++ G I GT +Y
Sbjct: 305 TDIALLQ----TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ 360
Query: 326 SENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTV 385
+ + L+S+ + +++ GP+ L E FP+ RG A + +
Sbjct: 361 APGI---------VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411
Query: 386 ISFLV------MKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEE 439
++ V M + H+ +++IY ++ + ++ +PE+KGKT EE
Sbjct: 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL----EE 467
Query: 440 LNK 442
+
Sbjct: 468 MEA 470
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 79.3 bits (196), Expect = 8e-16
Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 39/407 (9%)
Query: 36 ESSWVV----SIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
E +W V S +G L+ G+L D GRK LL + + +S +L F+ + V
Sbjct: 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV-DYD 150
V R + G+ +G ++ A + E K R + T + G++L V ++ D+
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWR 243
Query: 151 TLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSN 210
L + +F + ++PESP +LI +GR +A K L R + + K K+ E+ +
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL--QRIAKINGK-KLPAEVLS 300
Query: 211 IK-QDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEG 269
+ + K F+D+ TP R++ L + ++ +A Y G
Sbjct: 301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT------TAFSYYGLVLDLGNLG 354
Query: 270 SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENY 329
I D + G++ + T L+DR GRR + S +G++ L+ ++ + Y
Sbjct: 355 GNIYLDL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLL--LLFVPVDLY 410
Query: 330 TVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVIS-- 387
+ ++ +V E +P+ R L GV + V S
Sbjct: 411 FL---------RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461
Query: 388 --FLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKT 432
FLV ++L ++ ++ G+L F +PE+KG
Sbjct: 462 SPFLVYLGE------KWLFLPLVLFGGLALLAGILTLF-LPETKGVP 501
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 75.9 bits (187), Expect = 5e-15
Identities = 65/361 (18%), Positives = 114/361 (31%), Gaps = 48/361 (13%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++ E +++ LG + G L D GR+ LL L+ + LL++F +++L
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDT 151
V+R +QGL G +F A I + + RG G L +G +
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 152 LAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNI 211
+ +I + + + L SK E
Sbjct: 149 GWRAAFLILAILALLAAVLA------------------ALLLPRPPPESKRPKPAE---- 186
Query: 212 KQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSL 271
E L + ++ + L++ ++ + LP +
Sbjct: 187 ----EAPAPLVPAWKLLLR---DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLA 239
Query: 272 ITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331
L G+L + L DR GRR LL++ L A LLS
Sbjct: 240 GLL---LGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI---LAALGLALLS----- 288
Query: 332 DLSKFNWIPLISITCFAVIYSIGLGPLVPTLQG---EFFPSNTRGLAGGVTTITLTVISF 388
+ + ++ G G + P L + P RG A G+ ++
Sbjct: 289 -----LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
Query: 389 L 389
L
Sbjct: 344 L 344
Score = 41.6 bits (98), Expect = 6e-04
Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 26/207 (12%)
Query: 238 LLIVQIVAVADVISGMSAVLPYASSTF--ARTEGSLITPDECTLLLGILVFLSTFPTAFL 295
L + +A A+ Y + + TE L+ + L+ L
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-----TAFSLGYALAQPLAGRL 55
Query: 296 VDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGL 355
DR GRR +LL+ + L+ + + L+ + V+ +G
Sbjct: 56 SDRFGRRRVLLIGLLLFALGLLLLLF--------------ASSLWLLLV--LRVLQGLGG 99
Query: 356 GPLVPTLQ---GEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSL 412
G L P ++FP RG A G+ + + + L + ++ +G F I ++
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 413 GCIICGVLVYFIIPESKGKTFAQIQEE 439
++ VL ++P ++ E
Sbjct: 160 LALLAAVLAALLLPRPPPESKRPKPAE 186
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 75.8 bits (187), Expect = 6e-15
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++++++ +VS LG + + G+L D GR+ LL L+ + LL+ F +++L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV---- 147
V RF+ GL G ++ A I E K RG F G LL +G +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 148 DYDTLAYVSLVIPVVFLMTFIWMP 171
+ L + ++ ++ + +++
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLL 174
Score = 54.6 bits (132), Expect = 5e-08
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTG-PLYIISWLLVIFTKHVYV 90
+++AE+ ++S+ LG ++ + G L D +GR+ LL G L + LL+ + +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 91 LYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV--- 147
L V + G +G F E++ + RG S F + G L + +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 148 -DYDTLAYVSLVIPVVFLMTFIWMP 171
Y + + + ++ + + +P
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352
Score = 49.6 bits (119), Expect = 2e-06
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 19/150 (12%)
Query: 280 LLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWI 339
+ L + +L DR GRR +LL+ + L+ + + +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA----FASSLWL-------- 89
Query: 340 PLISITCFAVIYSIGLG---PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQV 396
+ + +G G P L E+FP RG A G+ + + + L + +
Sbjct: 90 ----LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 397 ICDHYGVYLNFYIYSLGCIICGVLVYFIIP 426
+ + G F I ++ ++ +L+ F++
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLR 175
Score = 47.3 bits (113), Expect = 8e-06
Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 15/179 (8%)
Query: 249 VISGMSAVLPYASSTFARTEG-SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRP-LLL 306
+ G +L Y G S L G+ L L DR GRR LLL
Sbjct: 187 LSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL 246
Query: 307 VSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEF 366
+ + + L+ + L+ P + TL E
Sbjct: 247 IGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 367 FPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFII 425
P RG A G+ ++ L + ++ D G F I + ++ +L+ +
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 36.9 bits (86), Expect = 0.018
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 4/147 (2%)
Query: 37 SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFT-KHVYVLYVVR 95
+ LG L+ P+ G L + +G + L L ++ LL++F + + +L +
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAF 184
Query: 96 FMQGLAMGIVFTVAPMYIGEISGAKCRGA---LSTFFIGMLNTGILLEYTVGPYVDYDTL 152
F+ + T P+Y+ E+ G A LS F +G + +L L
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244
Query: 153 AYVSLVIPVVFLMTFIWMPESPYFLIM 179
+ L++ + L+ P L+
Sbjct: 245 LLIGLLLAALGLLLLALAPSLALLLVA 271
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 63.9 bits (156), Expect = 6e-11
Identities = 69/362 (19%), Positives = 129/362 (35%), Gaps = 47/362 (12%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
+ + ++ S +G + G L D +GR+ LL + L+ + LL +V L
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRG-ALSTFFIGM---LNTGILLEYTVGPYV 147
++RF+ GL +G + + E + + RG A+ F G G L + P
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168
Query: 148 DYDTLAYVSLVIPVVFL-MTFIWMPESPYFLIMKGRD-VDARKSLFWLRGGRESSKDKIN 205
+ +L YV + P++ L + ++PES FL+ K + V + + E+
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSA--- 225
Query: 206 LELSNIKQDVEREMKLSDDFMDIISTPA-NRRSLLI-----VQIVAVADVISGMSAVLPY 259
L Q +R + R ++L+ + +V V + + LP
Sbjct: 226 LPEQKATQGTKR------SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNW----LPK 275
Query: 260 ASSTFARTEGSLITPDECTLLLGILVF---LSTFPTAFLVDRTGRRPLLLVSCFGSGISQ 316
+ + F + + +L DR G R L+ G+ +
Sbjct: 276 LMVELGF------SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV 329
Query: 317 LIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAG 376
L+ T F+ L+ + A + G + L F+P+ R
Sbjct: 330 LVGSTL-------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGV 376
Query: 377 GV 378
G
Sbjct: 377 GW 378
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 58.8 bits (143), Expect = 1e-10
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 38 SWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFM 97
+++ LG L+ G L D GRKP LL ++++S + + ++ VL + RF+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 98 QGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVD-----YDTL 152
QG I +I + RG + G LL +G +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 153 AYVSLVIPVVFLMTFIWMPES 173
+++++ F++ +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
Score = 39.6 bits (93), Expect = 6e-04
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Query: 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338
+ + + + L DR GR+P+LLV F +S + LS N TV
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA----LSSNITV------- 53
Query: 339 IPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQVIC 398
+I+ + L L + +P RG+A G+ + + + L + V+
Sbjct: 54 -LIIARFLQGFGAAFAL-VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111
Query: 399 DHYGVYLNFYIYSLGCIICGVLVYFIIPES 428
G F ++ + +L+ F++PE+
Sbjct: 112 QFLGWRAPFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 58.7 bits (142), Expect = 3e-09
Identities = 64/385 (16%), Positives = 129/385 (33%), Gaps = 48/385 (12%)
Query: 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLY 92
T+ +++ ++S + + G D GR+ ++T+ L+ L F ++
Sbjct: 45 TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMF 104
Query: 93 VVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLE----YTVGPYVD 148
+ R + G+ MG + + Y+ E R S I G ++ V P
Sbjct: 105 IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164
Query: 149 --YDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINL 206
+ L ++S++ + L +PE+ + R + L GG + +
Sbjct: 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMT 224
Query: 207 ELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFAR 266
+ + Q + L+V ++ + +LP T+ +
Sbjct: 225 LAAAMVQSAGKRWPTF--------------VYLVVLVLFANLYSHPIQDLLP----TYLK 266
Query: 267 TEGSLITPDECTLLLGILVFLSTFPTA-------FLVDRTGRRPLLLVSCFGSGISQLIA 319
+ L +P +V S FL D GRR + S + LI
Sbjct: 267 ADLGL-SPHTVA----NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL--LII 319
Query: 320 GTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT 379
+ + + + L F F + G+ ++P GE+FP++ R G T
Sbjct: 320 PVFAIGANVAVLGLGLF----------FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
Query: 380 TITLTVISFLVMKMYQVICDHYGVY 404
+ L + ++ Y
Sbjct: 370 YQLGNLGGALAPIIGALLAQRLDEY 394
>gnl|CDD|145103 pfam01770, Folate_carrier, Reduced folate carrier. The reduced
folate carrier (a transmembrane glycoprotein) transports
reduced folate into mammalian cells via the carrier
mediated mechanism (as opposed to the receptor mediated
mechanism) it also transports cytotoxic folate analogues
used in chemotherapy, such as methotrexate (MTX).
Mammalian cells have an absolute requirement for
exogenous folates which are needed for growth, and
biosynthesis of macromolecules.
Length = 410
Score = 52.3 bits (126), Expect = 3e-07
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 48 NLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMG---- 103
L +P+ L DY+ KP ++ G I++WLL++FT V + V+ F G+A
Sbjct: 54 YLALLVPVFLLTDYLRYKPVIILQGLAGIVTWLLLLFTTSVIAMQVMEFFYGVATAAEVA 113
Query: 104 ----IVFTVAPMYIGEISGAKCRGA-LSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLV 158
I V P ++ R A L F+ + +L+ V Y TL Y+SL
Sbjct: 114 YYSYIYSKVDPERYQRVTS-YTRAATLVGKFLSGVLGQLLVSLGR---VSYFTLNYISLA 169
Query: 159 IPVV--FLMTFIWMPE-SPYF 176
VV FL F+ P+ S +F
Sbjct: 170 SQVVALFLSLFLPRPKRSLFF 190
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 39.6 bits (92), Expect = 0.004
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK 86
E + + + + I+ LG +V G L D +GRK CLL + F +
Sbjct: 194 EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ 253
Query: 87 HVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGA----LSTFF-IGMLNTGILL-- 139
R + G +G + Y E + RG L F+ IG + +
Sbjct: 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313
Query: 140 -------EYTVGPYVDYDTLAYVSLV--IPVVF-LMTFIWMPESPYFLIMKGRDVDA 186
+ +G + + +V P VF + +MPESP F + G+ +A
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370
Score = 29.9 bits (67), Expect = 3.2
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 256 VLPYASSTFARTEGSLITPDECTLLLGILVFLSTFPTAF----LVDRTGRRPLLLVS 308
VLP A E L PD +LG++V+L AF L D+ GR+ LL+
Sbjct: 189 VLPSA-------EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238
>gnl|CDD|129888 TIGR00806, rfc, RFC reduced folate carrier. The Reduced Folate
Carrier (RFC) Family (TC 2.A.48) Members of the RFC
family mediate the uptake of folate, reduce folate,
derivatives of reduced folate and the drug,
methotrexate. Proteins of the RFC family are so-far
restricted to animals. RFC proteins possess 12 putative
transmembrane a-helical spanners (TMSs) and evidence for
a 12 TMS topology has been published for the human RFC.
The RFC transporters appear to transport reduced folate
by an energy-dependent, pH-dependent, Na+-independent
mechanism. Folate:H+ symport, folate:OH- antiport and
folate:anion antiport mechanisms have been proposed, but
the energetic mechanism is not well defined [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 511
Score = 38.7 bits (90), Expect = 0.005
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 37 SSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRF 96
++ ++ ++ +L +P+ L DY+ KP L+ ++ WLL++ V+ + ++
Sbjct: 64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEV 123
Query: 97 MQGLAMGI-------VFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVG-PYVD 148
+ M +F++ P + + A R A+ +G+ + +L + V ++
Sbjct: 124 FYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAV---LLGVFLSSVLGQLLVTLGWIS 180
Query: 149 YDTLAYVSLV--IPVVFLMTFIWMP-ESPYFLIMKGRDVDARKSL 190
Y TL +SLV VFL F+ P S +F R D R +L
Sbjct: 181 YSTLNIISLVFMTFSVFLALFLKRPKRSLFF----NRLEDVRGAL 221
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 38.6 bits (90), Expect = 0.006
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 46/182 (25%)
Query: 283 ILVFLSTFP----TAFLVDRTGRRPLLLVSCFGSGISQLI-AGTYYLLSENYTVDLSKFN 337
I+ T P T FLVD GR+P+ L+ F + + Y LS +
Sbjct: 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTH--------- 392
Query: 338 WIPLISITCFAVIYSI-----GLGP-----LVPTLQGEFFPSNTRGLAGGVTT----ITL 383
F IY + GP +VP GE FP+ R A G++
Sbjct: 393 --------GFLAIYVLAQFFANFGPNATTFIVP---GEVFPTRYRSTAHGISAASGKAGA 441
Query: 384 TVISFLVMKMYQVICDHYGVYLNFY------IYSLGCIICGVLVYFIIPESKGKTFAQIQ 437
+ F + + Q G + I++L + G+L +IPE+KGK+ ++
Sbjct: 442 IIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFAL-FMFLGILFTLLIPETKGKSLEELS 500
Query: 438 EE 439
E
Sbjct: 501 GE 502
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 38.0 bits (89), Expect = 0.009
Identities = 41/154 (26%), Positives = 57/154 (37%), Gaps = 43/154 (27%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGE 115
G L D VGR+P +L ++I+ L+ +F + VL +QGL G
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG------------ 111
Query: 116 ISGAKCR--------GALSTFFIGMLNTGI----LLEYTVGPYVD--------YDTLAYV 155
+ G R G +LN GI LL +G + Y L
Sbjct: 112 VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL-- 169
Query: 156 SLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKS 189
L V F M WMPE+ R DAR++
Sbjct: 170 LLGAGVTFSM-ARWMPET--------RPADARRT 194
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 4/148 (2%)
Query: 27 ETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF-- 84
+ ++S LG + + G L D GR+ L+ L+++ LL+
Sbjct: 31 TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90
Query: 85 TKHVYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCR--GALSTFFIGMLNTGILLEYT 142
+ +L ++R +QGL G + VA + E A+ +G G+ L
Sbjct: 91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPL 150
Query: 143 VGPYVDYDTLAYVSLVIPVVFLMTFIWM 170
+ + L + L+ + +
Sbjct: 151 LAGLLLGALLWGWRAAFLLAALLGLLLL 178
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 37.5 bits (87), Expect = 0.015
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 41 VSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGL 100
VS+ G + +G L D +GR+P L+T ++ ++ +FT + + RF+QG
Sbjct: 57 VSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGT 116
Query: 101 AMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGP 145
++ + TV + + E G + ++ + +L+ +GP
Sbjct: 117 SICFIATVGYVTVQEAFGQT----KGIKLMAIITSIVLVAPIIGP 157
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 37.0 bits (86), Expect = 0.020
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 292 TAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIY 351
T +L R G R L L+S F + L+ G ++ N L + F VI
Sbjct: 57 TGWLAKRFGTRRLFLISTFAFTLGSLLCG----VAPN------------LELMIIFRVIQ 100
Query: 352 SIGLGPLVPTLQGEF---FPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFY 408
G GPL+P +P RG A + +T+ V L + I ++Y F
Sbjct: 101 GFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL 160
Query: 409 IYSLGCIICGVLVYFIIPESK 429
I II V+ +FI+P K
Sbjct: 161 INVPIGIIVVVVAFFILPRDK 181
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 36.9 bits (86), Expect = 0.021
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 19/151 (12%)
Query: 39 WVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVY---VLYVVR 95
W S LG L + G L D +GRK L+ + L+ L + T + L V R
Sbjct: 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF---GLFSLATAQAWDFPSLLVAR 110
Query: 96 FMQGLAMGIVFTVAPMYIG---EISGAKCRG-ALSTFFIGMLNTGILLEYTVGPYVDYD- 150
+ G+ +G P I E G + RG A+S + G+ G L +G D
Sbjct: 111 LLTGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGV-PFGGALASVIGVLAAGDA 166
Query: 151 ---TLAYVSLVIP-VVFLMTFIWMPESPYFL 177
+ YV V P ++ + W+PES F
Sbjct: 167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFA 197
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 36.5 bits (85), Expect = 0.029
Identities = 70/417 (16%), Positives = 129/417 (30%), Gaps = 67/417 (16%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISW----LLVIFTKH 87
+++A+ +V S G +V P G+L+D G + T ++I+ W L F
Sbjct: 26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR----KTLAVFIVIWGVFTGLQAFAGA 81
Query: 88 VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV 147
LY++R + G A F + + A R + F G ++ GP V
Sbjct: 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII---GGPLV 138
Query: 148 DYDTLAYVSLVIPVV-----FLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKD 202
+ + + ++ + +W I D + WL +
Sbjct: 139 GWILIHFSWQWAFIIEGVLGIIWGVLW-----LKFI-----PDPPQKAKWLTEEEKYIVV 188
Query: 203 KINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASS 262
L+ + K I +RR + + ++ G
Sbjct: 189 G--GLLAEQQGKGPSTPKK----YQIKELLKDRRVWGLALGQFLVNIGLGF---FLTWFP 239
Query: 263 TFARTEG--SLITPDECTLLLGILVFLSTFPTAFLVDRTGRRP------------LLLVS 308
T+ E S++ L GI+ F+ L D RR LV
Sbjct: 240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299
Query: 309 CFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFP 368
+ + Y L+ L+++ F + G G + L + P
Sbjct: 300 SLLMFATNYVNIPYAALA--------------LVALGFFGL----GAGAIGWALISDNAP 341
Query: 369 SNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFII 425
N GL GG+ + + + I G + + + G L Y ++
Sbjct: 342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 36.4 bits (85), Expect = 0.031
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++ + +++ LG + + L + R+ LL L+I+S LL VL
Sbjct: 45 VSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVL 104
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRG-ALSTFFIGM 132
+ R + GLA G+ +++A + RG AL+ F G+
Sbjct: 105 LLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGL 146
Score = 30.3 bits (69), Expect = 2.4
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 229 ISTPANRRSLLIVQIVAVADVISGMS-----AVLPYASSTFARTEGS---LITPDECTLL 280
A + L + +A+A G + +LP ++ +EG+ LIT
Sbjct: 3 TPATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLIT------A 56
Query: 281 LGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLI---AGTYYLL 325
+ V L A L R RR LLL +S L+ A ++ +L
Sbjct: 57 YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVL 104
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 35.7 bits (83), Expect = 0.044
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 279 LLLGILVFLSTFP-TAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFN 337
L+L +++F T P + L DR GRRP+L+ F ++A + +D F
Sbjct: 261 LMLSLILFFITIPLSGALSDRIGRRPVLI--IFT-----VLAALLAVPLLMALLDSGSF- 312
Query: 338 WIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT 379
+ + A+I + GP+ L E FP+ R +
Sbjct: 313 TLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASLA 353
Score = 31.5 bits (72), Expect = 0.96
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPI-GFLVDYVGRKPCLLTTGPLYIISWLLVIFT-KHVY 89
+++ + V+ + + +T IP+ G L D +GR+P L+ L + + ++
Sbjct: 252 LSANSALLVLMLSLILFFIT-IPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG 310
Query: 90 VLYVVRFMQGLAMGIV-FTVAPM--YIGEISGAKCRGA 124
+ F+ I PM ++ E+ + R
Sbjct: 311 SFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYT 348
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 34.6 bits (79), Expect = 0.13
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 34 SAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYV 93
S ++ +G V+ + +G L D GR+P ++ T + ++ ++ L
Sbjct: 77 SENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLA 136
Query: 94 VRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGI--LLEYTVGPYV---- 147
+ G+A G +P++IGE+ K T F+G+L + GPY
Sbjct: 137 AMTLLGVAAGPAGA-SPLFIGELMSNK------TKFLGLLIVSAPTIAMNGAGPYFGQRL 189
Query: 148 ----DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSL 190
++ + Y+ +++ + ++ I P F + G+ R L
Sbjct: 190 AIQGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQLHGKKARKRDEL 236
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 33.8 bits (78), Expect = 0.19
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 46 LGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIV 105
G + +G L D +GR+P +L +I++ L ++ + + ++RF+QG+ + +
Sbjct: 59 AGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFI 118
Query: 106 FTV 108
V
Sbjct: 119 GAV 121
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 33.1 bits (76), Expect = 0.32
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLA 101
G L D GR+P LL ++ +S L + + ++ L V+RF+Q
Sbjct: 61 GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 32.7 bits (75), Expect = 0.35
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 421 VYFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQN-KINRNN 463
+FII ++K K +I + K K K ++ +N KIN N
Sbjct: 242 PHFIIEKNKYKDLNKIIGKFKKSFKKKKKNSKKNYENIKINIFN 285
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 33.1 bits (75), Expect = 0.37
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 424 IIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKINRNNEKADNNNVTKCKI 476
II E K +I ++LNK I K KE+ NKIN ++ D N K KI
Sbjct: 737 IIVEIKKHIHGEINKDLNK-ILEDFKNKEKELSNKINDYAKEKDELNKYKSKI 788
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 32.6 bits (74), Expect = 0.49
Identities = 68/335 (20%), Positives = 121/335 (36%), Gaps = 59/335 (17%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVAPMYIGE 115
G L D GRKP ++ + Y + L V +L + RF+ G+ M + A Y E
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133
Query: 116 ISGAKCRGALSTFFIGMLNTG-ILLEYTVGPYVD---YDTLAYVSLVIPVVFLMTFIWMP 171
+ S F + G I+ Y + + + + +V L +PV+ ++
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL-LPVLLVI------ 186
Query: 172 ESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIIST 231
++R SK+ +LS + + + M +
Sbjct: 187 --------------------YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFN 226
Query: 232 PANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEG-------SLITPDECTLLLGIL 284
A L V IV + I G + + T+ EG +L+T +LG +
Sbjct: 227 RAQFPLTLCVFIVLFS--IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNI 284
Query: 285 VFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISI 344
V+ DR G + + S + I + + +NY L+
Sbjct: 285 VW------GLCADRIGLKKTFSIGLLMSFL--FIFPLFRIPQDNYL----------LLGA 326
Query: 345 TCFAVIYS-IGLGPLVPTLQGEFFPSNTRGLAGGV 378
F ++ + +G+G LVP ++FP RGL G+
Sbjct: 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGL 361
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 32.1 bits (73), Expect = 0.57
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 297 DRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIGLG 356
D G R L++ C +A + + NY + L+ + ++
Sbjct: 58 DYQGDRKGLILFCCLLAA---LACLLFAWNRNYFL---------LLVLGVLLSSFASTAN 105
Query: 357 PLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKMYQV--ICDHYGVYLNFYIYSLGC 414
P + L E R + + + V+ + +G + F +L
Sbjct: 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165
Query: 415 IICGVLVYFIIP 426
++CGVLV+ +P
Sbjct: 166 VLCGVLVWLFLP 177
>gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756). Some
members in this family of proteins are annotated yhhA
however currently no function is known. The family
appears to be restricted to Enterobacteriaceae.
Length = 104
Score = 30.4 bits (68), Expect = 0.70
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 435 QIQEE--LNKHIAHKSKLKEQRKQNKINRNNEKADNN 469
QIQ++ LN+ + +++L++Q QN++N N ++
Sbjct: 47 QIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQG 83
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 31.4 bits (71), Expect = 0.93
Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 279 LLLGILVFLSTFPTAF---LVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSK 335
L+ I S + F L DR GR+ +LL S G GI ++ G L++N
Sbjct: 58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG----LAQNI------ 107
Query: 336 FNWIPLISITCFAVIYSIGLGPLVP---TLQGEFFPSNTRGLAGGVTTITLTVISFLVMK 392
W LI + LG VP L P N G A G + + L
Sbjct: 108 --WQFLILRALLGL-----LGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPL 160
Query: 393 MYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPES 428
++ D YG+ F+I + +C ++ F I E+
Sbjct: 161 AGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 31.6 bits (72), Expect = 0.95
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 349 VIYSIGLGPLVPTLQG---EFFPSNTRGLAGGVTTITLTVISFLVMKMYQVICDHYGVY- 404
VI + G + P ++ P R G++T + +F+ + + +C+ +G +
Sbjct: 139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP 198
Query: 405 LNFYIYSL-GCIICGVLVYFIIPESKGKTFAQIQEELNKHIAHKSKLKEQ 453
+ FY++ + GC L++F+ P I + K+I S L+ Q
Sbjct: 199 MIFYVFGIVGCAWS--LLWFVFPADDPSIHPCISKFEKKYIN--SSLQGQ 244
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 31.5 bits (72), Expect = 1.2
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 33 TSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH--VYV 90
+ ++ G L+ I LV G+K L L + +LL+ FT V +
Sbjct: 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVL 329
Query: 91 LYVVRFMQGLAMGIVFTVAPMYIGEI-------SGAKCRG---ALSTFFI 130
+ V + G+ GI + + + +G + G + TFF
Sbjct: 330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR 379
>gnl|CDD|204107 pfam08970, Sda, Sporulation inhibitor A. Members of this protein
family contain two antiparallel alpha helices that are
linked by a highly structured inter-helix loop to form a
helical hairpin; the structure is stabilised by numerous
hydrophobic and electrostatic interactions. These
sporulation inhibitors are antikinases that bind to the
histidine kinase KinA phosphotransfer domain and act as
a molecular barricade that inhibit productive
interaction between the ATP binding site and the
phosphorylatable KinA His residue. This results in the
inhibition of sporulation (by preventing phosphorylation
of spo0A).
Length = 46
Score = 28.0 bits (63), Expect = 1.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 217 REMKLSDDFMDIISTPANRRSL 238
+E+ L DF+++I RRSL
Sbjct: 17 KELNLDPDFIELIKEEIIRRSL 38
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 31.0 bits (70), Expect = 1.3
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 55 IGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKH---VYVLYVVRFMQGLAMGIVFT 107
+G L D GRK LT Y I ++L TKH VL + RF+ G+A ++F+
Sbjct: 89 VGSLADKQGRKRACLT----YCILYILSCITKHSPNYKVLMIGRFLGGIATSLLFS 140
>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
Length = 200
Score = 30.6 bits (70), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Query: 423 FIIPESKGKTFAQI-QEELNKHIAHK----SKLKEQ 453
F +PE KGKT A++ EE N I+H+ KL+ +
Sbjct: 159 FYVPE-KGKTMAELSSEEKNA-ISHRGKALKKLEAE 192
>gnl|CDD|213979 TIGR04366, cupin_WbuC, cupin fold metalloprotein, WbuC family.
Members of this family show sequence similarity to cupin
fold proteins (see pfam07883), including conserved His
residues likely to serve as metal-binding ligands. Many
members occur in bacterial O-antigen biosynthesis
regions. Some members have acquired the gene symbol wbuC
(e.g. Jarvis, et al, 2011), but publications using this
term do not ascribe a function.
Length = 132
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 326 SENYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFP 368
+ V++ W L++++ VI+ + GP P +F P
Sbjct: 87 GGTFGVEIPPGTWHTLVALSPGTVIFEVKEGPYDPLADKDFAP 129
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.1 bits (70), Expect = 1.6
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 418 GVLVYFIIPESKGKTFAQIQEELNKHIAHKSKLKEQRKQNKINRNNEK 465
+ + K + E L + I +LK Q + K
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL 211
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 30.6 bits (70), Expect = 1.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGL 100
G L D GRKP LL L+ + L +++ + L V+RF+Q +
Sbjct: 62 GPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAV 106
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 30.6 bits (69), Expect = 2.1
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 427 ESKGKTFAQIQEEL----NKHIAHKS--KLKEQRKQNKINRNNEKADN 468
+ ++E N+ I E K + N + D
Sbjct: 67 SQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDK 114
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 30.3 bits (69), Expect = 2.3
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 22/159 (13%)
Query: 279 LLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVDLSKFNW 338
I +S F L DR+ R + S I ++ G
Sbjct: 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF--------------SPS 116
Query: 339 IPLISITCF--AVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVISFLVMKM--Y 394
+ L ++ +G P T+ +F RG + + + L +
Sbjct: 117 LFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175
Query: 395 QVICDHYGVYLNFYIYSLGCIICGVLVYFII---PESKG 430
H G FY + II +++ F++ P+S+G
Sbjct: 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG 214
>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2. This entry is the
first approximately 250 residues of cortactin-binding
protein 2. In addition to being a positional candidate
for autism this protein is expressed at highest levels
in the brain in humans. The human protein has six
associated ankyrin repeat domains pfam00023 towards the
C-terminus which act as protein-protein interaction
domains.
Length = 193
Score = 29.5 bits (66), Expect = 2.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 198 ESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQ 242
E + K LEL K+ R MK SDDF +++ R L+ Q
Sbjct: 109 EKRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLKKLLEQ 153
>gnl|CDD|224878 COG1967, COG1967, Predicted membrane protein [Function unknown].
Length = 271
Score = 29.6 bits (67), Expect = 3.7
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 255 AVLPY---ASSTFARTEGSLITPDECTLLLGI--LVFLSTFPTAFLVDRTGRRPLLLVSC 309
A++P+ SS A + ++ P + GI LVF PT R +RP +++
Sbjct: 62 ALIPFVLLGSSVRALVDAGILPPSYLIITPGIYFLVFAIALPTLLASVRFFKRPYVVLL- 120
Query: 310 FGSGISQLIAGTYYLLSENYTVDLSKFNWIPLISITCFAVIYSIG 354
G G L A LL N FN L+ + A + +
Sbjct: 121 AGWG-LVLAAVALLLLLHNAPT----FNLYVLVLLIGVATVLTAV 160
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 29.5 bits (67), Expect = 4.0
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 28 TYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTK- 86
TY+ S++ SI L+ + LV GRK L ++ +L+ F
Sbjct: 250 TYVLGDPELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS 309
Query: 87 HVYVLYVVRFMQGLAMGIVFTV 108
++ ++ V+ + G V +
Sbjct: 310 NLPLILVLIILAGFGQNFVTGL 331
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 29.5 bits (66), Expect = 4.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 189 SLFWLRGGRESSKDKINLELSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVAD 248
SLF L+ + S K K+ LE + ++ E+ L +D + T A+ R L V
Sbjct: 31 SLFKLKRPKNSKKVKVGLESTGKRE--EKLSALDEDSEGMDDTLASFRKRLKGPKKGVGS 88
Query: 249 VISGMS 254
V + MS
Sbjct: 89 VSARMS 94
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 28.9 bits (65), Expect = 4.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 425 IPESKGKTFAQIQEELNKHIAHKSK 449
+PE KTFA++ E+ I+H++K
Sbjct: 155 VPEGYDKTFAELGLEIKNQISHRAK 179
>gnl|CDD|232795 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
RdgB/HAM1 family. Saccharomyces cerevisiae HAM1
protects against the mutagenic effects of the base
analog 6-N-hydroxylaminopurine, which can be a natural
product of monooxygenase activity on adenine.
Methanococcus jannaschii MJ0226 and E. coli RdgB are
also characterized as pyrophosphatases active against
non-standard purines NTPs. E. coli RdgB appears to act
by intercepting non-canonical deoxyribonucleotide
triphosphates from replication precursor pools. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 184
Score = 28.5 bits (64), Expect = 5.8
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 17/66 (25%)
Query: 396 VICDHYGVYLNFYIYSLGCIICGVLVY------------FIIPESKGKTFAQIQEELNKH 443
CD G L F G I+ G + IP +GKTFA++ E
Sbjct: 114 GYCDPNGEPLVF----EG-IVKGKITREPRGTYGFGYDPIFIPPEEGKTFAELTTEEKNK 168
Query: 444 IAHKSK 449
I+H+ K
Sbjct: 169 ISHRGK 174
>gnl|CDD|185746 cd08915, V_Alix_like, Protein-interacting V-domain of mammalian
Alix and related domains. This superfamily contains the
V-shaped (V) domain of mammalian Alix (apoptosis-linked
gene-2 interacting protein X), His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), Bro1 and Rim20 (also known as PalA) from
Saccharomyces cerevisiae, and related domains. Alix,
HD-PTP, Bro1, and Rim20 all interact with the ESCRT
(Endosomal Sorting Complexes Required for Transport)
system. Alix, also known as apoptosis-linked gene-2
interacting protein 1 (AIP1), participates in membrane
remodeling processes during the budding of enveloped
viruses, vesicle budding inside late endosomal
multivesicular bodies (MVBs), and the abscission
reactions of mammalian cell division. It also functions
in apoptosis. HD-PTP functions in cell migration and
endosomal trafficking, Bro1 in endosomal trafficking,
and Rim20 in the response to the external pH via the
Rim101 pathway. The Alix V-domain contains a binding
site, partially conserved in this superfamily, for the
retroviral late assembly (L) domain YPXnL motif. The
Alix V-domain is also a dimerization domain. Members of
this superfamily have an N-terminal Bro1-like domain,
which binds components of the ESCRT-III complex. The
Bro1-like domains of Alix and HD-PTP can also bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid. Many
members, including Alix, HD-PTP, and Bro1, also have a
proline-rich region (PRR), which binds multiple partners
in Alix, including Tsg101 (tumor susceptibility gene
101, a component of ESCRT-1) and the apoptotic protein
ALG-2. The C-terminal portion (V-domain and PRR) of Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes; it interacts with a
YPxL motif in Doa4s catalytic domain to stimulate its
deubiquitination activity. Rim20 may bind the ESCRT-III
subunit Snf7, bringing the protease Rim13 (a
YPxL-containing transcription factor) into proximity
with Rim101, and promoting the proteolytic activation of
Rim101. HD-PTP is encoded by the PTPN23 gene, a tumor
suppressor gene candidate often absent in human kidney,
breast, lung, and cervical tumors. HD-PTP has a
C-terminal catalytically inactive tyrosine phosphatase
domain.
Length = 342
Score = 28.8 bits (65), Expect = 7.1
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 435 QIQEELNKHIAHKSKLKEQRKQNKINRNNEKADNNNVTK 473
++ L + S+L+++R+ I+ K+ NN++
Sbjct: 190 EVVSSLRPLLNEVSELEKERE-RFISELEIKSRNNDILP 227
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 28.7 bits (65), Expect = 7.7
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 38 SWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIF--TKHVYVLYVVR 95
S ++ I + ++ +L G+K L L I +L+ F +++ V+
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319
Query: 96 FMQGLAMGIVFTVAPMYIGEI 116
+ G+ +G+ + + ++
Sbjct: 320 VLAGIGLGLATLLPWAMLADV 340
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 28.8 bits (65), Expect = 7.8
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 249 VISGMSAVLPYASS---------TFARTEGSLITPDECTLLLGILVFLSTF---PTA-FL 295
V++GM V S TF +T L D +LL+ + V +S F P L
Sbjct: 240 VLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAAD--SLLVTLCVGVSNFIWLPIGGAL 297
Query: 296 VDRTGRRPLLLV 307
DR GRRP+L+
Sbjct: 298 SDRIGRRPVLIA 309
>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional.
Length = 591
Score = 28.6 bits (64), Expect = 7.8
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 281 LGILVFLSTFPTAFLVDRTGRRPL----LLVSCFGSGISQLIAGTYYLLSENYTVDLSKF 336
+GI V P +F+ D G RP+ + V C G + L A T+ + E V LS +
Sbjct: 70 VGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLG---TLLFALTFQEVIEGSVVRLSVY 126
Query: 337 NWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRG 373
N + + F LG +V L FPSN RG
Sbjct: 127 NGLMTLGCMLF------DLGAVVTVLS--VFPSN-RG 154
>gnl|CDD|226614 COG4129, COG4129, Predicted membrane protein [Function unknown].
Length = 332
Score = 28.5 bits (64), Expect = 8.8
Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 101 AMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDTLAYVSLVIP 160
A G+V + + + I + IL+ + ++ ++ V + +
Sbjct: 84 AFGVVLLIIIPLL-----VLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFLLVFVGVG 138
Query: 161 VVFLMTFIWMPESPYFLIMKGRDVDAR-KSLFW--LRGGRESSKDKINLELSNIKQDVER 217
V FL+ + MP Y L + V+A S+ W R++ +++ +L + + + +
Sbjct: 139 VAFLVNLV-MPPPDYELKLYRAKVEAILASILWEVASYLRDTESAELDKDLEALLRLLIK 197
Query: 218 EMKLSD 223
KL
Sbjct: 198 LAKLIA 203
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.4 bits (64), Expect = 9.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 56 GFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVLYVVRFMQGLAMGIVFTVA 109
G + D GRKP + L+II+ LL + + RF+QG+ G + VA
Sbjct: 59 GKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVA 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.422
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,481,304
Number of extensions: 2471889
Number of successful extensions: 3621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3547
Number of HSP's successfully gapped: 162
Length of query: 478
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 377
Effective length of database: 6,457,848
Effective search space: 2434608696
Effective search space used: 2434608696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)