RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13206
(478 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 78.2 bits (191), Expect = 4e-16
Identities = 48/412 (11%), Positives = 114/412 (27%), Gaps = 28/412 (6%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIIS----WLLVIFTKH 87
+ + + +S I + + +G + D + L L + T
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 88 VYVLYVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYV 147
+ V++V+ F+ G G+ + + K RG + + + N G + + +
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL-FLL 174
Query: 148 DYDTLAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLE 207
+ + + + + + + + +K E
Sbjct: 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234
Query: 208 LSNIKQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFART 267
L+ + ++ + + L + I V + + +
Sbjct: 235 LTAKQIFMQYVLP--------------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVK 280
Query: 268 EGSLITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSE 327
+L L T ++ D+ R F + + Y++
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 340
Query: 328 NYTVDLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVTTITLTVIS 387
N + G L+ E P G A G T + +
Sbjct: 341 G--------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392
Query: 388 FLVMK-MYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQE 438
+ + D +G F + G I+ +L+ ++ K + +QE
Sbjct: 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 53.2 bits (126), Expect = 3e-08
Identities = 39/407 (9%), Positives = 99/407 (24%), Gaps = 35/407 (8%)
Query: 32 MTSAESSWVVSIIELGNLVTPIPIGFLVDYVGRKPCLLTTGPLYIISWLLVIFTKHVYVL 91
++ +++ + + I L +L+ G L D +G + LL ++ + +L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 92 YVVRFMQGLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILLEYTVGPYVDYDT 151
+ + GI A +
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM-------------F 146
Query: 152 LAYVSLVIPVVFLMTFIWMPESPYFLIMKGRDVDARKSLFWLRGGRESSKDKINLELSNI 211
+ + + F + ++L + A F S+
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN------- 199
Query: 212 KQDVEREMKLSDDFMDIISTPANRRSLLIVQIVAVADVISGMSAVLPYASSTFARTEGSL 271
S + L + I + +S FA E
Sbjct: 200 -AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258
Query: 272 ITPDECTLLLGILVFLSTFPTAFLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTV 331
T + +L F +++R G + LL++ + + +
Sbjct: 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------- 310
Query: 332 DLSKFNWIPLISITCFAVIYSIGLGPLVPTLQGEFFPSNTRGLAGGVT-TITLTVISFLV 390
+ + ++ + + L F V + +
Sbjct: 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365
Query: 391 MKMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQ 437
+ + + G + + L + ++ F + + + Q
Sbjct: 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis
[TaxId: 1423]}
Length = 46
Score = 28.3 bits (63), Expect = 0.18
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 217 REMKLSDDFMDIISTPANRRSL 238
EM L+ DF+++I RRSL
Sbjct: 17 TEMNLNRDFIELIENEIKRRSL 38
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate
pyrophosphatase TM0159 {Thermotoga maritima [TaxId:
2336]}
Length = 189
Score = 29.4 bits (65), Expect = 0.57
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 423 FIIPESKGKTFAQIQEELNKHIAHKSK 449
F IP+ KTF +I K I+H+SK
Sbjct: 151 FFIPDGYDKTFGEIPHLKEK-ISHRSK 176
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 29.1 bits (64), Expect = 0.75
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 425 IPESKGKTFAQIQEELNKHIAHKS----KLKEQRKQN 457
IPE KTFA++ E ++H+ E K N
Sbjct: 147 IPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKVN 183
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 184
Score = 27.6 bits (60), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 422 YFIIPESKGKTFAQIQEELNKHIAHKSK 449
IPE + +TFA++ E I+H+ K
Sbjct: 144 SIFIPEEEERTFAEMTTEEKSQISHRKK 171
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 27.2 bits (59), Expect = 3.6
Identities = 4/58 (6%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 392 KMYQVICDHYGVYLNFYIYSLGCIICGVLVYFIIPESKGKTFAQIQEELNKHIAHKSK 449
+ ++ + P+ +T+A++ + ++H+ +
Sbjct: 127 QPVRLFRGRTSGRIVAPRGCQDFGWDPC----FQPDGYEQTYAEMPKAEKNAVSHRFR 180
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 26.9 bits (58), Expect = 3.7
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 294 FLVDRTGRRPLLLVSCFGSGISQLIAGTYYLLSENYTVD 332
F + G P V+ G+G++ +++ + +
Sbjct: 1 FGLKERGMAPRYFVAG-GTGLAPVVSMVRQMQEWTAPNE 38
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
chinensis) [TaxId: 4843]}
Length = 325
Score = 27.2 bits (59), Expect = 4.1
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 4 TSMGWPSPVLRLFKSNITDMFRNETYIEMTSAESSWVVSIIELGNLVTPIPIGFLVDYVG 63
T + P+ + + ++ S++ + + + LV
Sbjct: 222 TLLILPNNIAASVARAYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEF 281
Query: 64 RKPCLLTTGPLYIISWLL-VIFTKHVYVLY 92
+ C+ G ++ F K+ YV++
Sbjct: 282 QGQCIAGFGYGNWGFAIIGDTFLKNNYVVF 311
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 26.7 bits (58), Expect = 5.2
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 425 IPESKGKTFAQI-QEELNKHIAHKSK 449
S+GKT A++ +EE + I+H+ +
Sbjct: 173 FVPSEGKTAAELTREEKSA-ISHRGQ 197
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
5759]}
Length = 77
Score = 25.0 bits (54), Expect = 5.8
Identities = 4/36 (11%), Positives = 14/36 (38%)
Query: 411 SLGCIICGVLVYFIIPESKGKTFAQIQEELNKHIAH 446
+ C +C L+ + K ++++ ++
Sbjct: 2 EILCNLCTGLINTLENLLTTKGADKVKDYISSLCNK 37
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 27.1 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 99 GLAMGIVFTVAPMYIGEISGAKCRGALSTFFIGMLNTGILL 139
G FT P++ E + S F GML GI L
Sbjct: 354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYL 394
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.422
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,728,840
Number of extensions: 79829
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 14
Length of query: 478
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,185,626
Effective search space: 461208514
Effective search space used: 461208514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)