BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13207
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 101/246 (41%), Gaps = 72/246 (29%)
Query: 5 PLQSEKCLNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQ 64
P Q E +W + L DS+ S+ VKF P LGL LA DG++R+Y+A + +L
Sbjct: 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149
Query: 65 WCLQHEVACPTLAS--------CLTWNHSFSRFN---------SISIMYEAHS-----IN 102
W L E+ ++ CL+W SRF+ +I+Y+ +
Sbjct: 150 WTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207
Query: 103 AE---HKDLIHDVAY-----DYYGLRMATCSS---------------------------D 127
A+ HK LI +++ +Y L C D
Sbjct: 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD 267
Query: 128 QNIKVTRDVMG-------------TRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDD 174
+ V D G + +E + +DH VW VSWN+TGTI++S+GDD
Sbjct: 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327
Query: 175 GCVRLW 180
G VRLW
Sbjct: 328 GKVRLW 333
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 101 INAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVS 160
++ H DL+HDV YD+YG +ATCSSDQ+IKV + T + E ++ H ++ +
Sbjct: 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAID 64
Query: 161 WNIT--GTIVASSGDDGCVRLW 180
W G I+AS+ D V+LW
Sbjct: 65 WASPEYGRIIASASYDKTVKLW 86
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 101/246 (41%), Gaps = 72/246 (29%)
Query: 5 PLQSEKCLNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQ 64
P Q E +W + L DS+ S+ VKF P LGL LA DG++R+Y+A + +L
Sbjct: 88 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 147
Query: 65 WCLQHEVACPTLAS--------CLTWNHSFSRFN---------SISIMYEAHS-----IN 102
W L E+ ++ CL+W SRF+ +I+Y+ +
Sbjct: 148 WTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 205
Query: 103 AE---HKDLIHDVAY-----DYYGLRMATCSS---------------------------D 127
A+ HK LI +++ +Y L C D
Sbjct: 206 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD 265
Query: 128 QNIKVTRDVMG-------------TRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDD 174
+ V D G + +E + +DH VW VSWN+TGTI++S+GDD
Sbjct: 266 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 325
Query: 175 GCVRLW 180
G VRLW
Sbjct: 326 GKVRLW 331
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 101 INAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVS 160
++ H DL+HDV YD+YG +ATCSSDQ+IKV + T + E ++ H ++ +
Sbjct: 4 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAID 62
Query: 161 WNIT--GTIVASSGDDGCVRLW 180
W G I+AS+ D V+LW
Sbjct: 63 WASPEYGRIIASASYDKTVKLW 84
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 100/246 (40%), Gaps = 72/246 (29%)
Query: 5 PLQSEKCLNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQ 64
P Q E +W + L DS+ S+ VKF P LGL LA DG++R+Y+A + +L
Sbjct: 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149
Query: 65 WCLQHEVACPTLAS--------CLTWNHSFSRFN---------SISIMYEAHS-----IN 102
W L E ++ CL+W SRF+ +I+Y+ +
Sbjct: 150 WTLTSEXKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207
Query: 103 AE---HKDLIHDVAY-----DYYGLRMATCSS---------------------------D 127
A+ HK LI +++ +Y L C D
Sbjct: 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFD 267
Query: 128 QNIKVTRDVMG-------------TRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDD 174
+ V D G + +E + +DH VW VSWN+TGTI++S+GDD
Sbjct: 268 NSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327
Query: 175 GCVRLW 180
G VRLW
Sbjct: 328 GKVRLW 333
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 101 INAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVS 160
++ H DL+HDV YD+YG +ATCSSDQ+IKV + T + E ++ H ++ +
Sbjct: 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAID 64
Query: 161 WNIT--GTIVASSGDDGCVRLW 180
W G I+AS+ D V+LW
Sbjct: 65 WASPEYGRIIASASYDKTVKLW 86
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 101 INAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVS 160
I H +LIHD DYYG R+ATCSSD+ IK+ +V G + I H VWRV
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIF-EVEGETHKL--IDTLTGHEGPVWRVD 60
Query: 161 WNIT--GTIVASSGDDGCVRLW 180
W GTI+AS DG V +W
Sbjct: 61 WAHPKFGTILASCSYDGKVLIW 82
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 88 RFNSISIMYEAHSINAEHKDLIHDVAYDYYGL---RMATCSSDQNIKV-TRDVMGTRFDI 143
++NS + Y S H D + DVA+ L +A+ S D+ + T+D +
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK- 244
Query: 144 ETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+T+ E +WR SW+++G ++A SG D V LW
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H ++IHD DYYG RMATCSSD+ IK+ +V G + I H VWRV W
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIF-EVEGETHKL--IDTLTGHEGPVWRVDWAHP 64
Query: 165 --GTIVASSGDDGCVRLW 180
GTI+AS DG V +W
Sbjct: 65 KFGTILASCSYDGKVMIW 82
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 88 RFNSISIMYEAHSINAEHKDLIHDVAYDYYGL---RMATCSSDQN-IKVTRDVMGTRFDI 143
++NS + Y S H D + DVA+ L MA+ S D+ I T+D +
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK- 244
Query: 144 ETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+T+ E +WR SW+++G ++A SG D V LW
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H +LIHD DYYG R+ATCSSD+ IK+ +V G + I H VWRV W
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIF-EVEGETHKL--IDTLTGHEGPVWRVDWAHP 66
Query: 165 --GTIVASSGDDGCVRLW 180
GTI+AS DG V +W
Sbjct: 67 KFGTILASCSYDGKVLIW 84
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 88 RFNSISIMYEAHSINAEHKDLIHDVAYDYYGL---RMATCSSDQN-IKVTRDVMGTRFDI 143
++NS + Y S H D + DVA+ L +A+ S D+ I T+D +
Sbjct: 188 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK- 246
Query: 144 ETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+T+ E +WR SW+++G ++A SG D V LW
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H +LIHD DYYG R+ATCSSD+ IK+ +V G + I H VWRV W
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIF-EVEGETHKL--IDTLTGHEGPVWRVDWAHP 64
Query: 165 --GTIVASSGDDGCVRLW 180
GTI+AS DG V +W
Sbjct: 65 KFGTILASCSYDGKVLIW 82
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 88 RFNSISIMYEAHSINAEHKDLIHDVAYDYYGL---RMATCSSDQN-IKVTRDVMGTRFDI 143
++NS + Y S H D + DVA+ L +A+ S D+ I T+D +
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK- 244
Query: 144 ETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+T+ E +WR SW+++G ++A SG D V LW
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H + IHD DYYG R ATCSSD+ IK+ +V G + I H VWRV W
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIF-EVEGETHKL--IDTLTGHEGPVWRVDWAHP 64
Query: 165 --GTIVASSGDDGCVRLW 180
GTI+AS DG V +W
Sbjct: 65 KFGTILASCSYDGKVXIW 82
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 88 RFNSISIMYEAHSINAEHKDLIHDVAYDYYGL---RMATCSSDQN-IKVTRDVMGTRFDI 143
++NS + Y S H D + DVA+ L A+ S D+ I T+D +
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK- 244
Query: 144 ETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+T+ E +WR SW+++G ++A SG D V LW
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 99 HSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWR 158
++++ H+D+IHD DYYG R+ATCSSD+++K+ G + I + H VW+
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---LIADLRGHEGPVWQ 62
Query: 159 VSWN--ITGTIVASSGDDGCVRLW 180
V+W + G I+AS D V +W
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIW 86
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 75/200 (37%), Gaps = 37/200 (18%)
Query: 15 WTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRI--YEAPDVMNLSQWCLQHEVA 72
W + +SV V + P GL+LA ++DG + + Y + + H +
Sbjct: 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152
Query: 73 C------PTLASCLTWNHS-------FSRF------NSISIMYEAHSIN-------AEHK 106
C P + +H RF N I + E H
Sbjct: 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212
Query: 107 DLIHDVAY-DYYGL---RMATCSSDQNIKV--TRDVMGTRFDIETIGNFEDHYCTVWRVS 160
D + DVA+ GL +A+CS D + + D + + + F D VW VS
Sbjct: 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND---VVWHVS 269
Query: 161 WNITGTIVASSGDDGCVRLW 180
W+IT I+A SG D V LW
Sbjct: 270 WSITANILAVSGGDNKVTLW 289
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 40/176 (22%)
Query: 39 GLVLATCAADGLVRIYEAPDVMNLSQ-------------W--CLQHEVACPTLASCLTWN 83
G LATC++D V+I+ DV N Q W H + LASC +++
Sbjct: 25 GTRLATCSSDRSVKIF---DVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASC-SYD 80
Query: 84 HSFSRFNSISIMYEAHSINAEHKDLIHDV--AYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+ + +E +A H ++ V A YGL +A SSD I + ++
Sbjct: 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140
Query: 142 DIETIGNFEDHYCTVWRVSWN---ITGTIV--------------ASSGDDGCVRLW 180
+++ I N C VSW + G+++ AS G D ++LW
Sbjct: 141 EVKKINNAHTIGCNA--VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW 194
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 90 NSISIM----YEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIET 145
N+++I ++ S EH +H V Y+ G A+ D I + V GT+
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK----- 224
Query: 146 IGNFED-------HYCTVWRVSWNITGTIVASSGDDGCVRLW 180
G FED H +V+ ++W+ GT +AS+ D +++W
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 24/179 (13%)
Query: 19 SNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRI--------YEAPDVMNLSQWCLQHE 70
+ L V V + P G +LATC+ D V + YE V+N ++H
Sbjct: 99 TTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156
Query: 71 VACPT--LASCLTWNHSFSRFNSISIMYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQ 128
V P+ L + +++ + + + + H+ + +A+D G R+A+CS D+
Sbjct: 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Query: 129 NIKVTRDVM-GTRFDIETIGNFEDHYC----------TVWRVSW-NITGTIVASSGDDG 175
+++ R + G + G+ C T++ ++W +TG + + GDD
Sbjct: 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA 275
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 96 YEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCT 155
YE S+ H + V + +A+ S D +K+ R+ D E H T
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE---EEDDWVCCATLEGHEST 196
Query: 156 VWRVSWNITGTIVASSGDDGCVRLW 180
VW ++++ +G +AS DD VR+W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 48 DGLVRIYEAPDVMNLSQWCLQHEVACPTLASC------LTWNHSFSRFNSISIMYEAHSI 101
D LV + P + W L A LASC W + S++ E H
Sbjct: 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-- 60
Query: 102 NAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSW 161
+ + VA+ G +A+ S D + + + D E + E H V V+W
Sbjct: 61 ----QRTVRKVAWSPCGNYLASASFDATTCIWKK---NQDDFECVTTLEGHENEVKSVAW 113
Query: 162 NITGTIVASSGDDGCVRLW 180
+G ++A+ D V +W
Sbjct: 114 APSGNLLATCSRDKSVWVW 132
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 31/177 (17%)
Query: 17 RRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYEAPDVM-------NLSQWCLQH 69
R+ L +SV V F P G +A+ + D V+++ + + S W +
Sbjct: 8 ERNRLEAHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 65
Query: 70 EVACPTLASC------LTWNHSFSRFNSISIMYEAHSINAEHKDLIHDVAYDYYGLRMAT 123
T+AS WN + +++ H + VA+ G +A+
Sbjct: 66 SPDGQTIASASDDKTVKLWNRNGQLLQTLT----------GHSSSVRGVAFSPDGQTIAS 115
Query: 124 CSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
S D+ +K+ + + + H +VW V+++ G +AS+ DD V+LW
Sbjct: 116 ASDDKTVKLWN------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H ++ VA+ G +A+ S D+ +K+ + + + H +VW V+++
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVWGVAFSPD 314
Query: 165 GTIVASSGDDGCVRLW 180
G +AS+ DD V+LW
Sbjct: 315 GQTIASASDDKTVKLW 330
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 35/189 (18%)
Query: 9 EKCLNQWTRRSNLVDSRT----SVTDVKFGPKQLGLVLATCAADGLVRIYE--APDVMNL 62
+K + W R L+ + T SV V F P G +A+ + D V+++ + L
Sbjct: 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVKLWNRNGQHLQTL 340
Query: 63 -----SQWCLQHEVACPTLASC------LTWNHSFSRFNSISIMYEAHSINAEHKDLIHD 111
S W + T+AS WN + +++ H +
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT----------GHSSSVRG 390
Query: 112 VAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASS 171
VA+ G +A+ S D+ +K+ + + + H +VW V+++ +AS+
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVWGVAFSPDDQTIASA 444
Query: 172 GDDGCVRLW 180
DD V+LW
Sbjct: 445 SDDKTVKLW 453
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 39/191 (20%)
Query: 9 EKCLNQWTRRSNLVDSRT----SVTDVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQ 64
+K + W R L+ + T SV V F P G +A+ + D V+++ L Q
Sbjct: 201 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNG--QLLQ 256
Query: 65 WCLQHEVAC---------PTLASC------LTWNHSFSRFNSISIMYEAHSINAEHKDLI 109
H + T+AS WN + +++ H +
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT----------GHSSSV 306
Query: 110 HDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVA 169
VA+ G +A+ S D+ +K+ + + + H +VW V+++ G +A
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWN------RNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360
Query: 170 SSGDDGCVRLW 180
S+ DD V+LW
Sbjct: 361 SASDDKTVKLW 371
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H + VA+ G +A+ S D+ +K+ + + + H +VW V+++
Sbjct: 138 HSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVWGVAFSPD 191
Query: 165 GTIVASSGDDGCVRLW 180
G +AS+ DD V+LW
Sbjct: 192 GQTIASASDDKTVKLW 207
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H + VA+ G +A+ S D+ +K+ + + + H +VW V+++
Sbjct: 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVWGVAFSPD 560
Query: 165 GTIVASSGDDGCVRLW 180
G +AS+ D V+LW
Sbjct: 561 GQTIASASSDKTVKLW 576
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 35/189 (18%)
Query: 9 EKCLNQWTRRSNLVDSRT----SVTDVKFGPKQLGLVLATCAADGLVRIYEAPDVM---- 60
+K + W R L+ + T SV V F P G +A+ + D V+++ +
Sbjct: 78 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTL 135
Query: 61 ---NLSQWCLQHEVACPTLASC------LTWNHSFSRFNSISIMYEAHSINAEHKDLIHD 111
+ S W + T+AS WN + +++ H +
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT----------GHSSSVWG 185
Query: 112 VAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASS 171
VA+ G +A+ S D+ +K+ + + + H +V V+++ G +AS+
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 172 GDDGCVRLW 180
DD V+LW
Sbjct: 240 SDDKTVKLW 248
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 138 GTRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
G+ ++ E H +V V+++ G +AS+ DD V+LW
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW 43
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H D + D+++D+ G +A+CS+D IK+ D G E I H V VS
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLW-DFQG----FECIRTMHGHDHNVSSVSIMPN 203
Query: 165 GTIVASSGDDGCVRLW 180
G + S+ D +++W
Sbjct: 204 GDHIVSASRDKTIKMW 219
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKV-TRDVMGTRFDIETIGNFEDHYCTVWRVSWNI 163
H++ + VA+ G +ATCS D+++ + D G + E I ++H V V W+
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY--ECISVLQEHSQDVKHVIWHP 163
Query: 164 TGTIVASSGDDGCVRLW 180
+ ++ASS D VR+W
Sbjct: 164 SEALLASSSYDDTVRIW 180
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 96 YEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCT 155
YE S+ EH + V + +A+ S D +++ +D D E + H T
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD---DWECVAVLNGHEGT 199
Query: 156 VWRVSWNITGTI--VASSGDDGCVRLW 180
VW ++ T + + S DD VR+W
Sbjct: 200 VWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMG--TRFDIETI--GNFEDHYCTVWRVS 160
HK +++VA+ + GL +A+ +D + V +V G F + G +E + V
Sbjct: 249 HKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV-----VK 302
Query: 161 W-NITG-TIVASSGDDGCVRLW 180
W + G TI+A+ GDDG V W
Sbjct: 303 WLELNGKTILATGGDDGIVNFW 324
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 30 DVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQWCLQHEVACPTLA---SCLTWNHSF 86
D+ GPK+ +V A G + E DV W L HE ++A + W+
Sbjct: 208 DINAGPKEGKIVDAKAIFTGHSAVVE--DVA----WHLLHESLFGSVADDQKLMIWD--- 258
Query: 87 SRFNSISIMYEAHSINAEHKDLIHDVAYDYYG-LRMATCSSDQNIKVTRDVMGTRFDIET 145
+R N+ S +H ++A H ++ ++++ Y +AT S+D+ + + D+ + + T
Sbjct: 259 TRSNTTS--KPSHLVDA-HTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHT 314
Query: 146 IGNFEDHYCTVWRVSWNI-TGTIVASSGDDGCVRLW 180
FE H +++V W+ TI+ASSG D + +W
Sbjct: 315 ---FESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 30 DVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQWCLQHEVACPTLA---SCLTWNHSF 86
D+ GPK+ +V A G + E DV W L HE ++A W+
Sbjct: 208 DINAGPKEGKIVDAKAIFTGHSAVVE--DVA----WHLLHESLFGSVADDQKLXIWD--- 258
Query: 87 SRFNSISIMYEAHSINAEHKDLIHDVAYDYYG-LRMATCSSDQNIKVTRDVMGTRFDIET 145
+R N+ S +H ++A H ++ ++++ Y +AT S+D+ + + D+ + + T
Sbjct: 259 TRSNTTS--KPSHLVDA-HTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHT 314
Query: 146 IGNFEDHYCTVWRVSWNI-TGTIVASSGDDGCVRLW 180
FE H +++V W+ TI+ASSG D + +W
Sbjct: 315 ---FESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 30 DVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQWCLQHEVACPTLA---SCLTWNHSF 86
D+ PK+ +V A G + E DV W L HE ++A + W+
Sbjct: 206 DISAVPKEGKVVDAKTIFTGHTAVVE--DV----SWHLLHESLFGSVADDQKLMIWD--- 256
Query: 87 SRFNSISIMYEAHSINAEHKDLIHDVAYDYYG-LRMATCSSDQNIKVTRDVMGTRFDIET 145
+R N+ S +HS++A H ++ ++++ Y +AT S+D+ + + D+ + + +
Sbjct: 257 TRSNNTS--KPSHSVDA-HTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHS 312
Query: 146 IGNFEDHYCTVWRVSWNI-TGTIVASSGDDGCVRLW 180
FE H +++V W+ TI+ASSG D + +W
Sbjct: 313 ---FESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|4GVO|A Chain A, Putative L-Cystine Abc Transporter From Listeria
Monocytogenes
pdb|4GVO|B Chain B, Putative L-Cystine Abc Transporter From Listeria
Monocytogenes
Length = 243
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 104 EHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTR 140
E K L +DVAY+ + L++ S+ +I T+D+ G R
Sbjct: 84 EKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKR 120
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 30 DVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQWCLQHEVACPTLA---SCLTWNHSF 86
D+ PK+ ++ A G + E DV W L HE ++A + W+
Sbjct: 212 DINATPKEHRVIDAKNIFTGHTAVVE--DVA----WHLLHESLFGSVADDQKLMIWD--- 262
Query: 87 SRFNSISIMYEAHSINAEHKDLIHDVAYDYYG-LRMATCSSDQNIKVTRDVMGTRFDIET 145
+R N+ S +H+++A H ++ ++++ Y +AT S+D+ + + D+ + + +
Sbjct: 263 TRNNNTS--KPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHS 318
Query: 146 IGNFEDHYCTVWRVSWNI-TGTIVASSGDDGCVRLW 180
FE H +++V W+ TI+ASSG D + +W
Sbjct: 319 ---FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 30 DVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQWCLQHEVACPTLA---SCLTWNHSF 86
D+ PK+ ++ A G + E DV W L HE ++A + W+
Sbjct: 210 DINATPKEHRVIDAKNIFTGHTAVVE--DVA----WHLLHESLFGSVADDQKLMIWD--- 260
Query: 87 SRFNSISIMYEAHSINAEHKDLIHDVAYDYYG-LRMATCSSDQNIKVTRDVMGTRFDIET 145
+R N+ S +H+++A H ++ ++++ Y +AT S+D+ + + D+ + + +
Sbjct: 261 TRNNNTS--KPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHS 316
Query: 146 IGNFEDHYCTVWRVSWNI-TGTIVASSGDDGCVRLW 180
FE H +++V W+ TI+ASSG D + +W
Sbjct: 317 ---FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 30 DVKFGPKQLGLVLATCAADGLVRIYEAPDVMNLSQWCLQHEVACPTLA---SCLTWNHSF 86
D+ PK+ ++ A G + E DV W L HE ++A + W+
Sbjct: 214 DINATPKEHRVIDAKNIFTGHTAVVE--DVA----WHLLHESLFGSVADDQKLMIWD--- 264
Query: 87 SRFNSISIMYEAHSINAEHKDLIHDVAYDYYG-LRMATCSSDQNIKVTRDVMGTRFDIET 145
+R N+ S +H+++A H ++ ++++ Y +AT S+D+ + + D+ + + +
Sbjct: 265 TRNNNTS--KPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALW-DLRNLKLKLHS 320
Query: 146 IGNFEDHYCTVWRVSWNI-TGTIVASSGDDGCVRLW 180
FE H +++V W+ TI+ASSG D + +W
Sbjct: 321 ---FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 144 ETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRL 179
E IG + H+ + V+ + GT AS G+DG +RL
Sbjct: 306 EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H+ + V Y+ G + +CS D + V + G R +G + H T+W + +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----LGTLDGHTGTIWSIDVDCF 85
Query: 165 GTIVASSGDDGCVRLW 180
+ D ++LW
Sbjct: 86 TKYCVTGSADYSIKLW 101
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 12 LNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYEAPDV-----MNLSQWC 66
LNQ R+ + SV +F P +LA+C+ADG +++++A +N+ Q+
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDK--LLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 67 LQHEVA---CPTLASCLTWNHSFSRF 89
L E + C +W+ +R
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARI 819
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H D ++ + G R+A+C +D+ ++V + G E + + H V +++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETG-----EKLLEIKAHEDEVLCCAFSTD 674
Query: 165 GTIVASSGDDGCVRLW 180
+A+ D V++W
Sbjct: 675 DRFIATCSVDKKVKIW 690
>pdb|3GGR|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 286
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 11 CLNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADG 49
CLN +TR SN++ ++ P +L +L A+G
Sbjct: 18 CLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANG 56
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 280
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 11 CLNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADG 49
CLN +TR SN++ ++ P +L +L A+G
Sbjct: 12 CLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANG 50
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 137 MGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+GTR + T F DH VW V +N G+ + S GDD + ++
Sbjct: 277 VGTRTCVHT---FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 83 NHSFSRFNSISIMYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMG-TRF 141
+H FS +N+I ++E+ IN + + D + + + C D N K+ V T+
Sbjct: 105 DHKFSNYNNIKFLFESLKINEKEQLYRPDTSKN-----IVECVRDYNEKIKNXVKKYTKV 159
Query: 142 DIETIG 147
DI +G
Sbjct: 160 DIAILG 165
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 96
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 97 SDSNLLVSASDDKTLKIW 114
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H D ++ + G R+A+C +D+ ++V + G E + + + H V +++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLCCAFSSD 675
Query: 165 GTIVASSGDDGCVRLW 180
+ +A+ D V++W
Sbjct: 676 DSYIATCSADKKVKIW 691
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 12 LNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYE 55
LNQ R+ + SV +F P +LA+C+ADG +R+++
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDE--LLASCSADGTLRLWD 778
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 140 RFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
R IG + H V ++W G +AS G+D V++W
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 105 HKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNIT 164
H D ++ + G R+A+C +D+ ++V + G E + + + H V +++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLCCAFSSD 668
Query: 165 GTIVASSGDDGCVRLW 180
+ +A+ D V++W
Sbjct: 669 DSYIATCSADKKVKIW 684
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 12 LNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADGLVRIYE 55
LNQ R+ + SV +F P +LA+C+ADG +R+++
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDE--LLASCSADGTLRLWD 771
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 44 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 98
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 99 SDSNLLVSASDDKTLKIW 116
>pdb|3A1J|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 281
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 11 CLNQWTRRSNLVDSRTSVTDVKFGPKQLGLVLATCAADG 49
CLN +TR SN + ++ P +L +L A+G
Sbjct: 13 CLNHFTRISNXIAKLAKTCTLRISPDKLNFILCDKLANG 51
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 80
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 81 SDSNLLVSASDDKTLKIW 98
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 30 DVKFGPKQLGL-VLATCA--ADGLVRIYEAPDVMNLSQWCLQHEVACPTLASCLT 81
D+ FG Q G L T ADG+V +YE + +W L E + + CLT
Sbjct: 374 DIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLT 428
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 80
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 81 SDSNLLVSASDDKTLKIW 98
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 77
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 78 SDSNLLVSASDDKTLKIW 95
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 77
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 78 SDSNLLVSASDDKTLKIW 95
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 21 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 75
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 76 SDSNLLVSASDDKTLKIW 93
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 37 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 91
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 92 SDSNLLVSASDDKTLKIW 109
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 74
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 75 SDSNLLVSASDDKTLKIW 92
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 74
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 75 SDSNLLVSASDDKTLKIW 92
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 25 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 79
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 80 SDSNLLVSASDDKTLKIW 97
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 80
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 81 SDSNLLVSASDDKTLKIW 98
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 16 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 70
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 71 SDSNLLVSASDDKTLKIW 88
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 19 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 73
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 74 SDSNLLVSASDDKTLKIW 91
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 123 TCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
T S N K+ + +F IE +F H + ++ + GT++AS+G DG + LW
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 123 TCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
T S N K+ + +F IE +F H + ++ + GT++AS+G DG + LW
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 140 RFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+F IE +F H + ++ + GT++AS+G DG + LW
Sbjct: 185 QFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 123 TCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
T S N K+ + +F IE +F H + ++ + GT++AS+G DG + LW
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 140 RFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+F IE +F H + ++ + GT++AS+G DG + LW
Sbjct: 179 QFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 140 RFDIETIGNFEDHYCTVWRVSWNITGTIVASSGDDGCVRLW 180
+F IE +F H + ++ + GT++AS+G DG + LW
Sbjct: 185 QFQIE--ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 77
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 78 SDSNLLVSASDDKTLKIW 95
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A+ S+D+ IK+ G +F+ G H + V+W+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 77
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 78 SDSNLLVSASDDKTLKIW 95
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 103 AEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFEDHYCTVWRVSWN 162
A H + V + G +A S+D+ IK+ G +F+ G H + V+W+
Sbjct: 23 AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISG----HKLGISDVAWS 77
Query: 163 ITGTIVASSGDDGCVRLW 180
++ S+ DD +++W
Sbjct: 78 SDSNLLVSASDDKTLKIW 95
>pdb|2VJR|B Chain B, The Structure Of Phycocyanin From Gloeobacter Violaceus
pdb|2VML|B Chain B, The Monoclinic Structure Of Phycocyanin From Gloeobacter
Violaceus
pdb|2VML|D Chain D, The Monoclinic Structure Of Phycocyanin From Gloeobacter
Violaceus
pdb|2VML|F Chain F, The Monoclinic Structure Of Phycocyanin From Gloeobacter
Violaceus
pdb|2VML|H Chain H, The Monoclinic Structure Of Phycocyanin From Gloeobacter
Violaceus
pdb|2VML|J Chain J, The Monoclinic Structure Of Phycocyanin From Gloeobacter
Violaceus
pdb|2VML|L Chain L, The Monoclinic Structure Of Phycocyanin From Gloeobacter
Violaceus
Length = 172
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 98 AHSINAEHKDLIHDVAYDYYGLRMATCSSDQNI 130
AH + AE DLI Y RMA C D I
Sbjct: 56 AHKLFAEQTDLIRPGGNAYPNRRMAACLRDMEI 88
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 115 DYYGLR----MATCSSDQNIKVTRDVMGTRFDIET---IGNFEDHYCTVWRVSWNITGTI 167
DYY L M T S D IK+ +D +T + E H V ++ T I
Sbjct: 191 DYYPLPDKPYMITASDDLTIKI--------WDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 168 VASSGDDGCVRLW 180
+ S +DG +++W
Sbjct: 243 IISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 115 DYYGLR----MATCSSDQNIKVTRDVMGTRFDIET---IGNFEDHYCTVWRVSWNITGTI 167
DYY L M T S D IK+ +D +T + E H V ++ T I
Sbjct: 191 DYYPLPDKPYMITASDDLTIKI--------WDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 168 VASSGDDGCVRLW 180
+ S +DG +++W
Sbjct: 243 IISGSEDGTLKIW 255
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 41 VLATCAADGLVRIYEAPDVMNLSQWCLQHEVAC-------------PTLASCLTWNHSFS 87
+LA + G++RI + ++ C++H V P L ++ +H+
Sbjct: 123 LLAVAGSRGIIRI-----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 177
Query: 88 RFNSISIMYEAHSINAE-HKDLIHDVAYDYYGLRMATCSSDQNIKVTR 134
+N + A E H+D + YD G ++ +C D ++K+ R
Sbjct: 178 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 225
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 171 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 217
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 153 YCTVWRVSWNITGTIVASSGDD 174
+ T W +SW G I+ + GDD
Sbjct: 255 HTTSWGLSWRFIGAIIMTHGDD 276
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 178 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 224
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 171 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 217
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 115 DYYGL----RMATCSSDQNIKVTRDVMGTRFDIET---IGNFEDHYCTVWRVSWNITGTI 167
DYY L M T S D IK+ +D +T + E H V ++ T I
Sbjct: 191 DYYPLPDKPYMITASDDLTIKI--------WDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 168 VASSGDDGCVRLW 180
+ S +DG +++W
Sbjct: 243 IISGSEDGTLKIW 255
>pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|B Chain B, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|C Chain C, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|D Chain D, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
Length = 297
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 171 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 217
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 41 VLATCAADGLVRIYEAPDVMNLSQWCLQHEVAC-------------PTLASCLTWNHSFS 87
+LA + G++RI + ++ C++H V P L ++ +H+
Sbjct: 82 LLAVAGSRGIIRI-----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 136
Query: 88 RFNSISIMYEAHSINAE-HKDLIHDVAYDYYGLRMATCSSDQNIKVTR 134
+N + A E H+D + YD G ++ +C D ++K+ R
Sbjct: 137 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 184
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 117 YGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFED 151
YG+ C D N++ +D G + + GNF D
Sbjct: 233 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 267
>pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|B Chain B, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|C Chain C, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|D Chain D, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCX|A Chain A, L-Kdo Aldolase
pdb|3LCX|B Chain B, L-Kdo Aldolase
pdb|3LCX|C Chain C, L-Kdo Aldolase
pdb|3LCX|D Chain D, L-Kdo Aldolase
Length = 319
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
Length = 303
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 178 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 224
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 117 YGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFED 151
YG+ C D N++ +D G + + GNF D
Sbjct: 212 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 246
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 41 VLATCAADGLVRIYEAPDVMNLSQWCLQHEVAC-------------PTLASCLTWNHSFS 87
+LA + G++RI + ++ C++H V P L ++ +H+
Sbjct: 86 LLAVAGSRGIIRI-----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 88 RFNSISIMYEAHSINAE-HKDLIHDVAYDYYGLRMATCSSDQNIKVTR 134
+N + A E H+D + YD G ++ +C D ++K+ R
Sbjct: 141 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 41 VLATCAADGLVRIYEAPDVMNLSQWCLQHEVAC-------------PTLASCLTWNHSFS 87
+LA + G++RI + ++ C++H V P L ++ +H+
Sbjct: 86 LLAVAGSRGIIRI-----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 88 RFNSISIMYEAHSINAE-HKDLIHDVAYDYYGLRMATCSSDQNIKVTR 134
+N + A E H+D + YD G ++ +C D ++K+ R
Sbjct: 141 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 41 VLATCAADGLVRIYEAPDVMNLSQWCLQHEVAC-------------PTLASCLTWNHSFS 87
+LA + G++RI + ++ C++H V P L ++ +H+
Sbjct: 87 LLAVAGSRGIIRI-----INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141
Query: 88 RFNSISIMYEAHSINAE-HKDLIHDVAYDYYGLRMATCSSDQNIKVTR 134
+N + A E H+D + YD G ++ +C D ++K+ R
Sbjct: 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 193 LYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRY 239
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 117 YGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFED 151
YG+ C D N++ +D G + + GNF D
Sbjct: 210 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 244
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 117 YGLRMATCSSDQNIKVTRDVMGTRFDIETIGNFED 151
YG+ C D N++ +D G + + GNF D
Sbjct: 216 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMD 250
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 178 LYQMEQIRREHPDLVLYNGYDNIFASGLLAGADGGIGSTYNIMGWRY 224
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 115 DYYGL----RMATCSSDQNIKVTRDVMGTRFDIET---IGNFEDHYCTVWRVSWNITGTI 167
DYY L M T S D IK+ +D +T + E H V ++ T I
Sbjct: 191 DYYPLPDKPYMITASDDLTIKI--------WDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 168 VASSGDDGCVRLW 180
+ S +DG +++W
Sbjct: 243 IISGSEDGTLKIW 255
>pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WPB|A Chain A, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|B Chain B, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|C Chain C, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|D Chain D, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2XFW|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
Length = 304
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 95 MYEAHSINAEHKDLIHDVAYDYYGLRMATCSSDQNIKVTRDVMGTRF 141
+Y+ I EH DL+ YD +D I T ++MG R+
Sbjct: 178 LYQMEQIRREHPDLVLYNGYDNIFASGLLAGADGGIGSTYNIMGWRY 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,782,769
Number of Sequences: 62578
Number of extensions: 217744
Number of successful extensions: 557
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 184
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)