BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13208
(120 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKDD +N
Sbjct: 193 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDDVCDFRN 233
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 199 RCVVDKAHRNQCQACRLKKCMQMGMNKD 226
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKD Q+
Sbjct: 184 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQN 221
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 190 RCVVDKAHRNQCQACRLKKCMQMGMNKDA 218
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKD Q+
Sbjct: 182 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQN 219
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 188 RCVVDKAHRNQCQACRLKKCMQMGMNKDA 216
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKD Q+
Sbjct: 181 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQN 218
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 187 RCVVDKAHRNQCQACRLKKCMQMGMNKDA 215
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKD Q+
Sbjct: 191 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQN 228
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 197 RCVVDKAHRNQCQACRLKKCMQMGMNKDA 225
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKD Q+
Sbjct: 182 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQN 219
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 188 RCVVDKAHRNQCQACRLKKCMQMGMNKDA 216
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/39 (84%), Positives = 36/39 (92%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 194 SCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQN 232
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 201 RCVVDKAHRNQCQACRLKKCLQMGMNKDA 229
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDKAHRNQCQACRLKKCLNMGMNKD Q+
Sbjct: 141 CQAGTGSCVVDKAHRNQCQACRLKKCLNMGMNKDAVQN 178
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLNMGMNKD
Sbjct: 148 CVVDKAHRNQCQACRLKKCLNMGMNKDA 175
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/38 (89%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 137 CQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQN 174
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/29 (93%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 143 RCIVDKAHRNQCQACRLKKCLQMGMNKDA 171
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 77.8 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 96 CQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQN 133
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 102 RCVVDKAHRNQCQACRLKKCLQMGMNKDA 130
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 147 CQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQN 184
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 153 RCVVDKAHRNQCQACRLKKCLQMGMNKDA 181
>gi|195334599|ref|XP_002033965.1| GM21604 [Drosophila sechellia]
gi|194125935|gb|EDW47978.1| GM21604 [Drosophila sechellia]
Length = 642
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/39 (84%), Positives = 36/39 (92%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 365 SCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQN 403
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 372 RCVVDKAHRNQCQACRLKKCLQMGMNKDA 400
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/34 (97%), Positives = 33/34 (97%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 119 CQAGTGRCIVDKAHRNQCQACRLKKCLAMGMNKD 152
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 125 RCIVDKAHRNQCQACRLKKCLAMGMNKD 152
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/35 (94%), Positives = 34/35 (97%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDD 68
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD+
Sbjct: 128 CQAGTGRCIVDKAHRNQCQACRLKKCLAMGMNKDE 162
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/32 (87%), Positives = 30/32 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
RCIVDKAHRNQCQACRLKKCL MGMNKD +S+
Sbjct: 134 RCIVDKAHRNQCQACRLKKCLAMGMNKDEESI 165
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 116 CQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 152
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 122 RCIVDKAHRNQCQACRLKKCLQMGMNKDA 150
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDKAHRNQCQACRLKKCLN GMNKD Q+
Sbjct: 175 CQAGTGSCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 212
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 182 CVVDKAHRNQCQACRLKKCLNKGMNKDA 209
>gi|308511839|ref|XP_003118102.1| CRE-FAX-1 protein [Caenorhabditis remanei]
gi|308238748|gb|EFO82700.1| CRE-FAX-1 protein [Caenorhabditis remanei]
Length = 470
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG CIVDKAHRNQCQACRLKKCLN GMNKD +H
Sbjct: 138 CQAGTGNCIVDKAHRNQCQACRLKKCLNKGMNKDGIRH 175
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDKAHRNQCQACRLKKCLN GMNKDG
Sbjct: 145 CIVDKAHRNQCQACRLKKCLNKGMNKDG 172
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 34/35 (97%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDD 68
CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKDD
Sbjct: 147 CQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDD 181
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 29/32 (90%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
RC+VDKAHRNQCQACRLKKCL MGMNKD S+
Sbjct: 153 RCVVDKAHRNQCQACRLKKCLQMGMNKDDDSI 184
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCLNMGMNKD Q+
Sbjct: 163 CQAGTGNCTVDKAHRNQCQACRLKKCLNMGMNKDAVQN 200
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/28 (92%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCLNMGMNKD
Sbjct: 170 CTVDKAHRNQCQACRLKKCLNMGMNKDA 197
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 135 CQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 171
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 141 RCIVDKAHRNQCQACRLKKCLQMGMNKDA 169
>gi|195155258|ref|XP_002018522.1| GL17752 [Drosophila persimilis]
gi|194114318|gb|EDW36361.1| GL17752 [Drosophila persimilis]
Length = 333
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 192 CQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 228
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 198 RCIVDKAHRNQCQACRLKKCLQMGMNKD 225
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG CIVDKAHRNQCQACRLKKCLN GMNKD Q+
Sbjct: 198 CQAGTGSCIVDKAHRNQCQACRLKKCLNKGMNKDAVQN 235
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/28 (92%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 205 CIVDKAHRNQCQACRLKKCLNKGMNKDA 232
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 225 CQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 261
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 231 RCVVDKAHRNQCQACRLKKCLQMGMNKDA 259
>gi|17568335|ref|NP_508547.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
gi|5881165|gb|AAD55066.1|AF176087_1 nuclear hormone receptor FAX-1 [Caenorhabditis elegans]
gi|351057992|emb|CCD64596.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
Length = 419
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDKAHRNQCQACRLKKCLN GMNKD Q+
Sbjct: 138 CQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 175
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 145 CVVDKAHRNQCQACRLKKCLNKGMNKDA 172
>gi|307168982|gb|EFN61861.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 296
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC+VDKAHRNQCQACRLKKC+ MGMNKD Q+
Sbjct: 167 CQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQN 204
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RC+VDKAHRNQCQACRLKKC+ MGMNKD
Sbjct: 173 RCVVDKAHRNQCQACRLKKCMQMGMNKD 200
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC++DKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 94 CQAGTGRCVIDKAHRNQCQACRLKKCLQMGMNKDAVQN 131
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC++DKAHRNQCQACRLKKCL MGMNKD
Sbjct: 100 RCVIDKAHRNQCQACRLKKCLQMGMNKDA 128
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 186 CQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 222
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 192 RCVVDKAHRNQCQACRLKKCLQMGMNKDA 220
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 33/38 (86%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDK HRNQCQACRLKKCL MGMNKD Q+
Sbjct: 102 CQAGTGLCVVDKTHRNQCQACRLKKCLQMGMNKDAVQN 139
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK HRNQCQACRLKKCL MGMNKD
Sbjct: 109 CVVDKTHRNQCQACRLKKCLQMGMNKDA 136
>gi|195027481|ref|XP_001986611.1| GH20426 [Drosophila grimshawi]
gi|193902611|gb|EDW01478.1| GH20426 [Drosophila grimshawi]
Length = 207
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 135 CQAGTGRCIVDKAHRNQCQACRLKKCLLMGMNKDAVQ 171
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 141 RCIVDKAHRNQCQACRLKKCLLMGMNKD 168
>gi|453232782|ref|NP_001263953.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
gi|403411176|emb|CCM09421.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
Length = 390
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDKAHRNQCQACRLKKCLN GMNKD Q+
Sbjct: 138 CQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 175
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 145 CVVDKAHRNQCQACRLKKCLNKGMNKDA 172
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG CIVDKAHRNQCQACRLKKCL+ GMNKD Q+
Sbjct: 191 CQAGTGSCIVDKAHRNQCQACRLKKCLSKGMNKDAVQN 228
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDKAHRNQCQACRLKKCL+ GMNKD
Sbjct: 198 CIVDKAHRNQCQACRLKKCLSKGMNKDA 225
>gi|198459164|ref|XP_002138650.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
gi|198136599|gb|EDY69208.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
Length = 190
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 34/37 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTGRCIVDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 49 CQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 85
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RCIVDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 55 RCIVDKAHRNQCQACRLKKCLQMGMNKD 82
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 91 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 128
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 98 CPVDKAHRNQCQACRLKKCLQAGMNKDA 125
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 71 CQAGTGLCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 108
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 78 CPVDKAHRNQCQACRLKKCLQAGMNKDA 105
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
CQAGTG C+VDK HRNQCQACRLKKC+ MGMNKD
Sbjct: 165 CQAGTGSCLVDKTHRNQCQACRLKKCIEMGMNKD 198
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+VDK HRNQCQACRLKKC+ MGMNKD
Sbjct: 172 CLVDKTHRNQCQACRLKKCIEMGMNKD 198
>gi|7504432|pir||T29238 hypothetical protein F56E3.4 - Caenorhabditis elegans
Length = 351
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDKAHRNQCQACRLKKCLN GMNKD Q+
Sbjct: 99 CQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 136
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 106 CVVDKAHRNQCQACRLKKCLNKGMNKDA 133
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 33/37 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAGTG C+VDKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 111 CQAGTGMCLVDKAHRNQCQACRLKKCLQMGMNKDAVQ 147
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 118 CLVDKAHRNQCQACRLKKCLQMGMNKDA 145
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 71 CQAGTGLCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 108
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 78 CPVDKAHRNQCQACRLKKCLQAGMNKDA 105
>gi|360045180|emb|CCD82728.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAG G CI+DKAHRNQCQACR+KKC+ MGMNKD Q+
Sbjct: 267 CQAGNGLCIIDKAHRNQCQACRMKKCIRMGMNKDAVQN 304
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DKAHRNQCQACR+KKC+ MGMNKD
Sbjct: 274 CIIDKAHRNQCQACRMKKCIRMGMNKDA 301
>gi|256086655|ref|XP_002579512.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAG G CI+DKAHRNQCQACR+KKC+ MGMNKD Q+
Sbjct: 267 CQAGNGLCIIDKAHRNQCQACRMKKCIRMGMNKDAVQN 304
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DKAHRNQCQACR+KKC+ MGMNKD
Sbjct: 274 CIIDKAHRNQCQACRMKKCIRMGMNKDA 301
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 71 CQAGTGLCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 108
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 78 CPVDKAHRNQCQACRLKKCLQAGMNKDA 105
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/38 (84%), Positives = 33/38 (86%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTGRC VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 78 CQAGTGRCPVDKAHRNQCQACRLKKCLQSGMNKDAVQN 115
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 84 RCPVDKAHRNQCQACRLKKCLQSGMNKDA 112
>gi|268578711|ref|XP_002644338.1| C. briggsae CBR-FAX-1 protein [Caenorhabditis briggsae]
Length = 418
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C+VDKAHRNQCQACRLKKCLN GMNKD Q+
Sbjct: 138 CQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQN 175
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 145 CVVDKAHRNQCQACRLKKCLNKGMNKDA 172
>gi|158298860|ref|XP_319009.4| AGAP009890-PA [Anopheles gambiae str. PEST]
gi|157014089|gb|EAA14402.4| AGAP009890-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 44/68 (64%), Gaps = 10/68 (14%)
Query: 13 TCQAGTERCI---------VDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+C G E+ I V K N+ + CQAGTG C VDKAHRNQCQACRLKKCL MG
Sbjct: 71 SCGIGVEKVIPKGESSLKGVVKNSDNRYE-CQAGTGSCTVDKAHRNQCQACRLKKCLTMG 129
Query: 64 MNKDDAQH 71
MNKD Q+
Sbjct: 130 MNKDAVQN 137
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 25/27 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 107 CTVDKAHRNQCQACRLKKCLTMGMNKD 133
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 71 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 108
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 78 CPVDKAHRNQCQACRLKKCLQAGMNKDA 105
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH---LKNSLLYEFACTNLV 86
CQAGTG C VDKAHRNQCQACRLKKC+ GMNKD Q+ +NS C LV
Sbjct: 95 CQAGTGLCTVDKAHRNQCQACRLKKCMQTGMNKDAVQNERQPRNSSQVRIDCAPLV 150
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKC+ GMNKD
Sbjct: 102 CTVDKAHRNQCQACRLKKCMQTGMNKDA 129
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 68 CQAGTGLCPVDKAHRNQCQACRLKKCLQTGMNKDAVQN 105
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 75 CPVDKAHRNQCQACRLKKCLQTGMNKDA 102
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 35 QAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+AGTGRC+VDKAHRNQCQACRLKKCL MGMNKD Q+
Sbjct: 23 RAGTGRCLVDKAHRNQCQACRLKKCLQMGMNKDAVQN 59
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 4/48 (8%)
Query: 70 QHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ ++ L+Y A T RC+VDKAHRNQCQACRLKKCL MGMNKD
Sbjct: 13 RSVRRKLIYRRAGTG----RCLVDKAHRNQCQACRLKKCLQMGMNKDA 56
>gi|402590073|gb|EJW84004.1| hypothetical protein WUBG_05086, partial [Wuchereria bancrofti]
Length = 176
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 34/38 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG CIVDKAHRNQCQACRLKKCL+ GMNKD Q+
Sbjct: 23 CQAGTGSCIVDKAHRNQCQACRLKKCLSKGMNKDAVQN 60
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDKAHRNQCQACRLKKCL+ GMNKD
Sbjct: 30 CIVDKAHRNQCQACRLKKCLSKGMNKDA 57
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAG GRC VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 79 CQAGNGRCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 116
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/29 (86%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 85 RCPVDKAHRNQCQACRLKKCLQAGMNKDA 113
>gi|349970344|dbj|GAA35793.1| photoreceptor-specific nuclear receptor [Clonorchis sinensis]
Length = 756
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDD 68
CQAGTG C +DKAHRNQCQACRLKKCL MGMNK+D
Sbjct: 306 CQAGTGLCSIDKAHRNQCQACRLKKCLRMGMNKND 340
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +DKAHRNQCQACRLKKCL MGMNK+
Sbjct: 313 CSIDKAHRNQCQACRLKKCLRMGMNKN 339
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 75 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 112
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNKDA 109
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 81 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 118
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 88 CPVDKAHRNQCQACRLKKCLQAGMNKDA 115
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 83 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 120
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 90 CPVDKAHRNQCQACRLKKCLQAGMNKDA 117
>gi|341874211|gb|EGT30146.1| CBN-FAX-1 protein [Caenorhabditis brenneri]
Length = 396
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/34 (91%), Positives = 32/34 (94%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
CQAGTG C+VDKAHRNQCQACRLKKCLN GMNKD
Sbjct: 138 CQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKD 171
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCLN GMNKDG
Sbjct: 145 CVVDKAHRNQCQACRLKKCLNKGMNKDG 172
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQAG+G C++DKAHRNQCQACRLKKCL MGMNKD Q
Sbjct: 60 CQAGSGHCVIDKAHRNQCQACRLKKCLQMGMNKDAVQ 96
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C++DKAHRNQCQACRLKKCL MGMNKD
Sbjct: 67 CVIDKAHRNQCQACRLKKCLQMGMNKDA 94
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 73 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 110
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 80 CPVDKAHRNQCQACRLKKCLQAGMNKDA 107
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/38 (76%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAG+G C VDKAHRNQCQACRL+KCL GMNKD Q+
Sbjct: 63 CQAGSGTCPVDKAHRNQCQACRLRKCLQSGMNKDAVQN 100
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRL+KCL GMNKD
Sbjct: 70 CPVDKAHRNQCQACRLRKCLQSGMNKDA 97
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 4 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 41
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 11 CPVDKAHRNQCQACRLKKCLQAGMNKDA 38
>gi|345322078|ref|XP_001509616.2| PREDICTED: retinoic acid receptor RXR-like [Ornithorhynchus
anatinus]
Length = 203
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
CQAGTG C VDKAHRNQCQACRL+KCL GMNKD +LK + + C
Sbjct: 135 CQAGTGMCPVDKAHRNQCQACRLRKCLQAGMNKDAPVNLKGMPIVKMTC 183
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 24/29 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
C VDKAHRNQCQACRL+KCL GMNKD
Sbjct: 142 CPVDKAHRNQCQACRLRKCLQAGMNKDAP 170
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ +C++ +G+CIVDK HRNQC+ACRL+KC ++
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRNRQYSCKSRSSGQCIVDKTHRNQCRACRLRKCFDV 99
Query: 63 GMNKDDAQH 71
GMN+D QH
Sbjct: 100 GMNRDAVQH 108
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+++C + +CIVDK HRNQC+ACRL+KC ++GMN+D
Sbjct: 67 QYSCKSRSSGQCIVDKTHRNQCRACRLRKCFDVGMNRDA 105
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C VDKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 75 CQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQN 112
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMNKD
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNKDA 109
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 84 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 121
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 80 FACTNLVEL-RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
FAC V C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 80 FACRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDA 118
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 144 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 181
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 151 CPVDKAHRNQCQACRLKKCLQAGMNQDA 178
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 71 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 108
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 78 CPVDKAHRNQCQACRLKKCLQAGMNQDA 105
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
R CQAGTG C+VDKAHRNQCQACRLKKCL+ GMNKD Q
Sbjct: 64 RKLVYRCQAGTGCCLVDKAHRNQCQACRLKKCLDAGMNKDAVQ 106
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDKAHRNQCQACRLKKCL+ GMNKD
Sbjct: 77 CLVDKAHRNQCQACRLKKCLDAGMNKDA 104
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 225 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 262
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 232 CPVDKAHRNQCQACRLKKCLQAGMNQDA 259
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 276 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 313
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 283 CPVDKAHRNQCQACRLKKCLQAGMNQDA 310
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 366 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 403
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 373 CPVDKAHRNQCQACRLKKCLQAGMNQDA 400
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 235 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 272
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 242 CPVDKAHRNQCQACRLKKCLQAGMNQDA 269
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 32/38 (84%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQAGTG C +DKAHRNQCQACRLKKCL GMNKD Q+
Sbjct: 46 CQAGTGMCTIDKAHRNQCQACRLKKCLAAGMNKDAVQN 83
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +DKAHRNQCQACRLKKCL GMNKD
Sbjct: 53 CTIDKAHRNQCQACRLKKCLAAGMNKDA 80
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 19 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCF 74
Query: 61 NMGMNKDDAQ 70
MNKDD Q
Sbjct: 75 QSAMNKDDVQ 84
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 80 FACTNLVEL--RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C EL RC VDK HRNQC+ACRL KC MNKD
Sbjct: 43 YTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKD 81
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 84 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 121
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 91 CPVDKAHRNQCQACRLKKCLQAGMNQDA 118
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 118 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 155
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 125 CPVDKAHRNQCQACRLKKCLQAGMNQDA 152
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++GT G C VDK HRNQC+ACRLKKCL +
Sbjct: 37 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGTQGGCPVDKTHRNQCRACRLKKCLEV 92
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 93 NMNKDAVQH 101
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 61 YVCKSGTQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C+VDK HRNQC+ACRLKKCL +
Sbjct: 45 KHYGVYACDGCSGFFKRSI----RRNRSYVCKSGNQGGCLVDKTHRNQCRACRLKKCLEV 100
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 101 NMNKDAVQH 109
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C+VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 69 YVCKSGNQGGCLVDKTHRNQCRACRLKKCLEVNMNKDA 106
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 76 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 113
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 83 CPVDKAHRNQCQACRLKKCLQAGMNQDA 110
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 76 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 113
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 83 CPVDKAHRNQCQACRLKKCLQAGMNQDA 110
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 284 CQVGMGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 321
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 291 CPVDKAHRNQCQACRLKKCLQAGMNQDA 318
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 68 CQVGAGMCPVDKAHRNQCQACRLKKCLQEGMNQDAVQN 105
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 75 CPVDKAHRNQCQACRLKKCLQEGMNQDA 102
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 83 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 120
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 90 CPVDKAHRNQCQACRLKKCLQAGMNQDA 117
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQEGMNQDAVQN 112
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQEGMNQDA 109
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQ--AGTGRCIVDKAHRNQCQACRLKKCLN 61
+H G+ C +R I RN+ C+ +G G C VDK HRNQC+ACRLKKCL
Sbjct: 51 KHYGVYACDGCSGFFKRSI----RRNRTYVCKNRSGGGPCPVDKTHRNQCRACRLKKCLQ 106
Query: 62 MGMNKDDAQH 71
+ MNKD QH
Sbjct: 107 VDMNKDAVQH 116
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 86 CPVDKTHRNQCRACRLKKCLQVDMNKDA 113
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A G+C +DK HRNQC+ACRLKKC
Sbjct: 44 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAQGDFKGKCPIDKTHRNQCRACRLKKCF 99
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 100 EASMNKDAVQH 110
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C +DK HRNQC+ACRLKKC MNKD
Sbjct: 79 KCPIDKTHRNQCRACRLKKCFEASMNKDA 107
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 180 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 217
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 187 CPVDKAHRNQCQACRLKKCLQAGMNQDA 214
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/42 (66%), Positives = 32/42 (76%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75
CQ G G C VDKAHRNQCQACRLKKCL GMN+D +++S
Sbjct: 135 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDGEAGMESS 176
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 27/30 (90%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKS 119
C VDKAHRNQCQACRLKKCL GMN+DG++
Sbjct: 142 CPVDKAHRNQCQACRLKKCLQAGMNQDGEA 171
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 91 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 128
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 98 CPVDKAHRNQCQACRLKKCLQAGMNQDA 125
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 56 CQVGAGMCPVDKAHRNQCQACRLKKCLQEGMNQDAVQN 93
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 63 CPVDKAHRNQCQACRLKKCLQEGMNQDA 90
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 287 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 324
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 294 CPVDKAHRNQCQACRLKKCLQAGMNQDA 321
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 83 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 120
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 90 CPVDKAHRNQCQACRLKKCLQAGMNQDA 117
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 91 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 128
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 98 CPVDKAHRNQCQACRLKKCLQAGMNQDA 125
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R++ AC+A +G C+VDKAHRNQC+ACRL KCL++GMNKD QH
Sbjct: 49 RDRRYACKARNSGACLVDKAHRNQCRACRLAKCLDVGMNKDAVQH 93
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+AC C+VDKAHRNQC+ACRL KCL++GMNKD
Sbjct: 53 YACKARNSGACLVDKAHRNQCRACRLAKCLDVGMNKDA 90
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 63 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 118
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 119 NMNKDAVQH 127
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 87 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 124
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 151 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 206
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 207 QSAMNKDAVQH 217
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 174 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 214
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++ G G C VDK HRNQC+ACRLKKCL
Sbjct: 27 KHYGIYACDGCAGFFKRSI----RRNRQYICKSRGQGTCPVDKTHRNQCRACRLKKCLEA 82
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 83 GMNKDAVQH 91
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C VDK HRNQC+ACRLKKCL GMNKD
Sbjct: 50 QYICKSRGQGTCPVDKTHRNQCRACRLKKCLEAGMNKDA 88
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 148 CQVGAGMCPVDKAHRNQCQACRLKKCLQEGMNQDAVQN 185
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 155 CPVDKAHRNQCQACRLKKCLQEGMNQDA 182
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 76 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 113
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 83 CPVDKAHRNQCQACRLKKCLQAGMNQDA 110
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 63 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 118
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 119 NMNKDAVQH 127
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 87 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 124
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 37 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 92
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 93 NMNKDAVQH 101
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 61 YVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 19 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 74
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 75 NMNKDAVQH 83
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 43 YVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 80
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 37 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 92
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 93 NMNKDAVQH 101
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 61 YVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 159 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 214
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 215 NMNKDAVQH 223
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 183 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 220
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 46 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCF 101
Query: 61 NMGMNKDDAQHLKNS 75
MNKD LK +
Sbjct: 102 QSAMNKDGKCSLKKT 116
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 80 FACTNLVEL--RCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
+ C EL RC VDK HRNQC+ACRL KC MNKDGK
Sbjct: 70 YTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKDGK 110
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A G CI+DK HRNQC+ACRLKKC N+GMNKD QH
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQH 112
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E CI+DK HRNQC+ACRLKKC N+GMNKD
Sbjct: 71 QYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDA 109
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 37 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 92
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 93 NMNKDAVQH 101
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 61 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 86 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 141
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 142 NMNKDAVQH 150
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 110 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 147
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A G CI+DK HRNQC+ACRLKKC N+GMNKD QH
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQH 112
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E CI+DK HRNQC+ACRLKKC N+GMNKD
Sbjct: 71 QYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDA 109
>gi|341880402|gb|EGT36337.1| hypothetical protein CAEBREN_17159 [Caenorhabditis brenneri]
Length = 418
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG--TGRCIVDKAHRNQCQACRLKKCLN 61
+H G+ C +R I + HR + G GRC+VDK HRNQC+ACRL+KCL
Sbjct: 30 KHYGIFSCDGCAGFFKRSI--RRHRQYVCKNKGGFDEGRCVVDKTHRNQCRACRLRKCLE 87
Query: 62 MGMNKDDAQH 71
+GMNKD QH
Sbjct: 88 IGMNKDAVQH 97
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Query: 79 EFACTN---LVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C N E RC+VDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 53 QYVCKNKGGFDEGRCVVDKTHRNQCRACRLRKCLEIGMNKDA 94
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 27 HRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
HRN+ C+A GRC VDK HRNQC+ACRL KC MNKD QH
Sbjct: 184 HRNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKDAVQH 231
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 80 FACTNLVEL--RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C EL RC VDK HRNQC+ACRL KC MNKD
Sbjct: 189 YTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKDA 228
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 37 KHYGVYACDGCSGFFKRSI----RRNRIYLCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 92
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 93 NMNKDAVQH 101
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 61 YLCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|341894285|gb|EGT50220.1| CBN-NHR-67 protein [Caenorhabditis brenneri]
Length = 412
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG--TGRCIVDKAHRNQCQACRLKKCLN 61
+H G+ C +R I + HR + G GRC+VDK HRNQC+ACRL+KCL
Sbjct: 24 KHYGIFSCDGCAGFFKRSI--RRHRQYVCKNKGGFDEGRCVVDKTHRNQCRACRLRKCLE 81
Query: 62 MGMNKDDAQH 71
+GMNKD QH
Sbjct: 82 IGMNKDAVQH 91
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Query: 79 EFACTN---LVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C N E RC+VDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 47 QYVCKNKGGFDEGRCVVDKTHRNQCRACRLRKCLEIGMNKDA 88
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 172 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 227
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 228 NMNKDAVQH 236
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 196 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 233
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 49 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 104
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 105 NMNKDAVQH 113
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 73 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 110
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic
construct]
Length = 386
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|268536318|ref|XP_002633294.1| C. briggsae CBR-NHR-67 protein [Caenorhabditis briggsae]
Length = 426
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
GRCIVDK HRNQC+ACRL+KCL +GMNKD QH
Sbjct: 66 GRCIVDKTHRNQCRACRLRKCLEIGMNKDAVQH 98
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 84 NLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
N E RCIVDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 62 NFDEGRCIVDKTHRNQCRACRLRKCLEIGMNKDA 95
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 23 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 78
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 79 NMNKDAVQH 87
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 47 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 84
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform
1 [Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog
(predicted) [Sorex araneus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Nomascus leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Loxodonta africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic
construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Papio anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2
group E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRSYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Otolemur garnettii]
Length = 385
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + E+ C+VDK HRNQC+ACRLKKC +GMNKD
Sbjct: 108 QYVCKSKAEVACVVDKTHRNQCRACRLKKCFEVGMNKDA 146
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
C+VDK HRNQC+ACRLKKC +GMNKD QH
Sbjct: 119 CVVDKTHRNQCRACRLKKCFEVGMNKDAVQH 149
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGVGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 76 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 113
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 83 CPVDKAHRNQCQACRLKKCLQAGMNQD 109
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC +DK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAQGDLKGRCPIDKTHRNQCRACRLNKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 IAAMNKDAVQH 89
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC +DK HRNQC+ACRL KC MNKD
Sbjct: 58 RCPIDKTHRNQCRACRLNKCFIAAMNKDA 86
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC +DK HRNQC+ACRL KC
Sbjct: 22 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAQGELKGRCPIDKTHRNQCRACRLNKCF 77
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 78 QSAMNKDAVQH 88
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 80 FACTNLVEL--RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C EL RC +DK HRNQC+ACRL KC MNKD
Sbjct: 46 YTCKAQGELKGRCPIDKTHRNQCRACRLNKCFQSAMNKDA 85
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 45 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKATGDMKGRCPVDKTHRNQCRACRLSKCF 100
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 101 QASMNKDAVQH 111
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 68 VYTCKATGDMKGRCPVDKTHRNQCRACRLSKCFQASMNKDA 108
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 19 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCF 74
Query: 61 NMGMNKD 67
MNKD
Sbjct: 75 QSAMNKD 81
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 80 FACTNLVEL--RCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
+ C EL RC VDK HRNQC+ACRL KC MNKDGK
Sbjct: 43 YTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKDGK 83
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 29 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 84
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 85 QSAMNKDAVQH 95
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 52 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 92
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDA 86
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + E+ C+VDK HRNQC+ACRLKKC +GMNKD
Sbjct: 66 QYVCKSKSEVPCVVDKTHRNQCRACRLKKCFEVGMNKDA 104
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTG-RCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ + C+VDK HRNQC+ACRLKKC +
Sbjct: 43 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSKSEVPCVVDKTHRNQCRACRLKKCFEV 98
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 99 GMNKDAVQH 107
>gi|149041874|gb|EDL95715.1| rCG58152 [Rattus norvegicus]
Length = 240
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 76 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 113
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 83 CPVDKAHRNQCQACRLKKCLQAGMNQD 109
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+++
Sbjct: 47 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIHV 102
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 103 GMNKDAVQH 111
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + C+VDK HRNQC+ACRL KC+++GMNKD
Sbjct: 70 QYVCKAKSKGGCMVDKTHRNQCRACRLAKCIHVGMNKDA 108
>gi|308491334|ref|XP_003107858.1| CRE-NHR-67 protein [Caenorhabditis remanei]
gi|308249805|gb|EFO93757.1| CRE-NHR-67 protein [Caenorhabditis remanei]
Length = 422
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
GRCIVDK HRNQC+ACRL+KCL +GMNKD QH
Sbjct: 66 GRCIVDKTHRNQCRACRLRKCLEIGMNKDAVQH 98
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 84 NLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
N E RCIVDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 62 NFDEGRCIVDKTHRNQCRACRLRKCLEIGMNKDA 95
>gi|339238405|ref|XP_003380757.1| protein tailless [Trichinella spiralis]
gi|316976296|gb|EFV59616.1| protein tailless [Trichinella spiralis]
Length = 445
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGR---CIVDKAHRNQCQACRLKKC 59
+H G+ C +R I RN+ C+A GTG+ C VDK HRNQC+ACRL KC
Sbjct: 50 KHYGIFACDGCAGFFKRSI----RRNRQYVCKARGTGQEGSCTVDKTHRNQCRACRLSKC 105
Query: 60 LNMGMNKDDAQH 71
L +GMNK+ QH
Sbjct: 106 LQVGMNKEAVQH 117
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
E C VDK HRNQC+ACRL KCL +GMNK+
Sbjct: 84 EGSCTVDKTHRNQCRACRLSKCLQVGMNKEA 114
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+ +
Sbjct: 47 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQV 102
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 103 GMNKDAVQH 111
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + C+VDK HRNQC+ACRL KC+ +GMNKD
Sbjct: 70 QYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQVGMNKDA 108
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+
Sbjct: 41 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQA 96
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 97 GMNKDAVQH 105
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 64 QYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 102
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+
Sbjct: 55 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQA 110
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 111 GMNKDAVQH 119
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 78 QYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 116
>gi|358254993|dbj|GAA56686.1| nuclear hormone receptor family member nhr-67 [Clonorchis sinensis]
Length = 1106
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 14/75 (18%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT----------GRCIVDKAHRNQCQA 53
+H G+ C +R I RN+ AC+ T G C VDK+HRNQC+A
Sbjct: 33 KHYGIYACDGCAGFFKRSI----RRNRQYACKNRTANGTKLSTAVGGCRVDKSHRNQCRA 88
Query: 54 CRLKKCLNMGMNKDD 68
CRLKKCL +GMN+DD
Sbjct: 89 CRLKKCLEVGMNRDD 103
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/27 (77%), Positives = 25/27 (92%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDK+HRNQC+ACRLKKCL +GMN+D
Sbjct: 76 CRVDKSHRNQCRACRLKKCLEVGMNRD 102
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC ++
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFDV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC ++GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFDVGMNKDA 105
>gi|295656543|gb|ADG26734.1| tailless protein [Platynereis dumerilii]
Length = 190
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C++ G C VDK HRNQC+ACRLKKCL GMNKD QH
Sbjct: 21 RNRQYICKSRNGSCPVDKTHRNQCRACRLKKCLEAGMNKDAVQH 64
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 23/27 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDK HRNQC+ACRLKKCL GMNKD
Sbjct: 34 CPVDKTHRNQCRACRLKKCLEAGMNKD 60
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|390336665|ref|XP_003724398.1| PREDICTED: uncharacterized protein LOC100893306 [Strongylocentrotus
purpuratus]
Length = 1111
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 36 AGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL--YEFACTNLVELRCIVD 93
+G CI+ RN C+ CR KKCL +GM++ + SL ++C+ E CI+
Sbjct: 228 SGKEECIITPVTRNHCRYCRFKKCLRVGMSRG---FFRRSLRDRNTYSCSGKEE--CIIT 282
Query: 94 KAHRNQCQACRLKKCLNMGMNK 115
RN C+ CR KKCL +GM++
Sbjct: 283 PVTRNHCRYCRFKKCLRVGMSR 304
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 26/77 (33%)
Query: 16 AGTERCIVDKAHRNQCQACQ--------------------------AGTGRCIVDKAHRN 49
+G E CI+ RN C+ C+ +G CI+ RN
Sbjct: 228 SGKEECIITPVTRNHCRYCRFKKCLRVGMSRGFFRRSLRDRNTYSCSGKEECIITPVTRN 287
Query: 50 QCQACRLKKCLNMGMNK 66
C+ CR KKCL +GM++
Sbjct: 288 HCRYCRFKKCLRVGMSR 304
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 50/135 (37%)
Query: 31 CQACQA----------GTGRCIVDKA------HRNQCQACRLKKCLNMGMNKDDAQHLKN 74
C+AC++ T RC+ +++ R CQ CR + C+ GM + Q K+
Sbjct: 124 CEACKSFFIRSTRKGEPTFRCVNNQSCPITPYSRLLCQFCRYQNCMKAGMGRKAKQPSKD 183
Query: 75 SLLYEFACTNLVEL----------------------------------RCIVDKAHRNQC 100
+ C ++ CI+ RN C
Sbjct: 184 LAKDQVPCKVCGDVSSGIHFGVYTCEGCKGFFRRSLRDRNTYSCSGKEECIITPVTRNHC 243
Query: 101 QACRLKKCLNMGMNK 115
+ CR KKCL +GM++
Sbjct: 244 RYCRFKKCLRVGMSR 258
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+
Sbjct: 41 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQA 96
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 97 GMNKDAVQH 105
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 64 QYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 102
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQ---CQACQAGTGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I H N+ C+A A GRC +DK HRNQC+ACRL KC
Sbjct: 19 KHYGIYSCDGCSGFFKRSI----HSNREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCF 74
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 75 EANMNKDAVQH 85
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC +DK HRNQC+ACRL KC MNKD
Sbjct: 54 RCPIDKTHRNQCRACRLAKCFEANMNKDA 82
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+
Sbjct: 41 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQA 96
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 97 GMNKDAVQH 105
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 64 QYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 102
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++ + G C VDK HRNQC+ACRLKKC+
Sbjct: 24 KHYGIYACDGCAGFFKRSI----RRNRQYICKSRSQGLCPVDKTHRNQCRACRLKKCVEC 79
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 80 GMNKDAVQH 88
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C VDK HRNQC+ACRLKKC+ GMNKD
Sbjct: 47 QYICKSRSQGLCPVDKTHRNQCRACRLKKCVECGMNKDA 85
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G+C+VD A RNQCQACR KKCL +
Sbjct: 25 KHYGVQSCDGCRGFFKRSI----RRNLDYVCKE-NGQCVVDVARRNQCQACRFKKCLQVN 79
Query: 64 MNKDDAQHLKNSLLYEFACTNLVEL 88
MN+D QH + Y++ + V+L
Sbjct: 80 MNRDAVQHERAPRCYQYKRDSPVDL 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD A RNQCQACR KKCL + MN+D
Sbjct: 56 QCVVDVARRNQCQACRFKKCLQVNMNRDA 84
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus
norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNK QH
Sbjct: 82 NMNKGAVQH 90
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNK 115
+ C + + C VDK HRNQC+ACRLKKCL + MNK
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNK 85
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGR-CIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ + C+VDK HRNQC+ACRLKKC +
Sbjct: 43 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSKSETPCMVDKTHRNQCRACRLKKCFEV 98
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 99 GMNKDAVQH 107
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + E C+VDK HRNQC+ACRLKKC +GMNKD
Sbjct: 66 QYVCKSKSETPCMVDKTHRNQCRACRLKKCFEVGMNKDA 104
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGR-CIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ + C+VDK HRNQC+ACRLKKC +
Sbjct: 43 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSKSETPCMVDKTHRNQCRACRLKKCFEV 98
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 99 GMNKDAVQH 107
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + E C+VDK HRNQC+ACRLKKC +GMNKD
Sbjct: 66 QYVCKSKSETPCMVDKTHRNQCRACRLKKCFEVGMNKDA 104
>gi|8248247|gb|AAF74116.1|AF225975_1 Tc-tailless [Tribolium castaneum]
Length = 302
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A G CI+DK HRNQC+ACRLKKC N+GMNKD QH
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQH 112
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E CI+DK HRNQC+ACRLKKC N+GMNKD
Sbjct: 71 QYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDA 109
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+
Sbjct: 41 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQA 96
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 97 GMNKDAVQH 105
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 64 QYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 102
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C+A + G C VDK HRNQC+ACRLKKC+
Sbjct: 26 KHYGIFACDGCAGFFKRSI----RRSRQYLCKAKSEGSCTVDKTHRNQCRACRLKKCVEA 81
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 82 GMNKDAVQH 90
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C VDK HRNQC+ACRLKKC+ GMNKD
Sbjct: 49 QYLCKAKSEGSCTVDKTHRNQCRACRLKKCVEAGMNKDA 87
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A + G C+VDK HRNQC+ACRL+KC+ +GMNKD QH
Sbjct: 40 RNRQYVCKAKSEGACLVDKTHRNQCRACRLRKCVEVGMNKDAVQH 84
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C+VDK HRNQC+ACRL+KC+ +GMNKD
Sbjct: 43 QYVCKAKSEGACLVDKTHRNQCRACRLRKCVEVGMNKDA 81
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 37 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 92
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 93 GMNKDAVQH 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 60 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 98
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 37 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 92
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 93 GMNKDAVQH 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 60 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 98
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 37 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 92
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 93 GMNKDAVQH 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 60 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 98
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 37 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 92
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 93 GMNKDAVQH 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 60 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 98
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 37 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 92
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 93 GMNKDAVQH 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 60 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 98
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQ---AGTGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HR + C+ G G C +DK HRNQC+ACRL+KC
Sbjct: 65 KHYGVYACDGCSGFFKRSI----HRGRVYVCKQQGKGGGDCPIDKTHRNQCRACRLRKCF 120
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 121 EAQMNKDAVQH 131
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +DK HRNQC+ACRL+KC MNKD
Sbjct: 101 CPIDKTHRNQCRACRLRKCFEAQMNKDA 128
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I R + G C+VD A RNQCQACR +KCL M
Sbjct: 153 KHYGVQSCDGCRGFFKRSI-----RRSLEYVCKENGNCVVDVARRNQCQACRFRKCLEMK 207
Query: 64 MNKDDAQHLKNSLLYEFACTN 84
MN+D QH + Y+F N
Sbjct: 208 MNRDAVQHERAPRCYQFKKDN 228
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD A RNQCQACR +KCL M MN+D
Sbjct: 185 CVVDVARRNQCQACRFRKCLEMKMNRDA 212
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus
griseus]
Length = 323
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C++G G C VDK HRNQC+ACRLKKCL + MNKD QH
Sbjct: 33 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQH 77
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 47 CPVDKTHRNQCRACRLKKCLEVNMNKDA 74
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 37 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 92
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 93 GMNKDAVQH 101
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 60 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 98
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQAC-QAGT--GRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C Q G G C +DK HRNQC+ACRLKKC
Sbjct: 59 KHYGVYACDGCSGFFKRSI----HRNRVYTCKQQGKDGGNCPIDKTHRNQCRACRLKKCF 114
Query: 61 NMGMNKDDAQH 71
+ MNKD QH
Sbjct: 115 DAQMNKDAVQH 125
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +DK HRNQC+ACRLKKC + MNKD
Sbjct: 95 CPIDKTHRNQCRACRLKKCFDAQMNKDA 122
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C+A + G C+VDK HRNQC+ACRL KC+
Sbjct: 41 KHYGIFACDGCAGFFKRSI----RRNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQA 96
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 97 GMNKDAVQH 105
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 64 QYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 102
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQ---CQACQAGTGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I H N+ C+A A GRC +DK HRNQC+ACRL KC
Sbjct: 17 KHYGIYSCDGCSGFFKRSI----HSNREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCF 72
Query: 61 NMGMNKD 67
MNKD
Sbjct: 73 EANMNKD 79
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC +DK HRNQC+ACRL KC MNKD
Sbjct: 52 RCPIDKTHRNQCRACRLAKCFEANMNKDA 80
>gi|28396034|gb|AAO39180.1| nuclear receptor NHR-67 [Caenorhabditis elegans]
Length = 409
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C VDK HRNQC+ACRL+KCL +GMNKD QH
Sbjct: 59 GQCKVDKTHRNQCRACRLRKCLEIGMNKDAVQH 91
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 79 EFACTNL---VELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C N E +C VDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 47 QYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDA 88
>gi|17541682|ref|NP_502094.1| Protein NHR-67 [Caenorhabditis elegans]
gi|17369901|sp|Q9XVV3.1|NHR67_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-67
gi|3874154|emb|CAA97428.1| Protein NHR-67 [Caenorhabditis elegans]
Length = 416
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C VDK HRNQC+ACRL+KCL +GMNKD QH
Sbjct: 66 GQCKVDKTHRNQCRACRLRKCLEIGMNKDAVQH 98
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 79 EFACTNL---VELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C N E +C VDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 54 QYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDA 95
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 28 RNQCQACQA--GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A G G C VDK HRNQC++CRLKKC ++ MNKD QH
Sbjct: 38 RNRSYTCRATNGKGNCPVDKIHRNQCRSCRLKKCFDVSMNKDAVQH 83
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRNQC++CRLKKC ++ MNKD
Sbjct: 53 CPVDKIHRNQCRSCRLKKCFDVSMNKDA 80
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 26/33 (78%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G C VDK HRNQC+ACRLKKCL + MNKD QH
Sbjct: 114 GGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQH 146
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 116 CPVDKTHRNQCRACRLKKCLEVNMNKDA 143
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQ---CQACQAGTGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I H N+ C+A + GRC +DK HRNQC+ACRL KC
Sbjct: 37 KHYGIYSCDGCSGFFKRSI----HHNREYICKAEGSMKGRCPIDKTHRNQCRACRLAKCF 92
Query: 61 NMGMNKDDAQH 71
MN+D QH
Sbjct: 93 EANMNRDAVQH 103
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC +DK HRNQC+ACRL KC MN+D
Sbjct: 72 RCPIDKTHRNQCRACRLAKCFEANMNRDA 100
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C +R I R C+ A GRC +DK HRNQC+ACRL KC
Sbjct: 21 KHYGIYSCDGCSGFFKRSI-HSNRRYICKVQGAMKGRCPIDKTHRNQCRACRLAKCFEAN 79
Query: 64 MNKDDAQH 71
MN+D QH
Sbjct: 80 MNRDAVQH 87
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC +DK HRNQC+ACRL KC MN+D
Sbjct: 56 RCPIDKTHRNQCRACRLAKCFEANMNRDA 84
>gi|393910973|gb|EFO28247.2| nuclear receptor NHR-67 [Loa loa]
Length = 301
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C+VDK HRNQC+ACRL KCL +GMNK+ QH
Sbjct: 42 GKCLVDKTHRNQCRACRLTKCLEIGMNKEAVQH 74
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
E +C+VDK HRNQC+ACRL KCL +GMNK+
Sbjct: 41 EGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 71
>gi|312065519|ref|XP_003135830.1| nuclear receptor NHR-67 [Loa loa]
Length = 330
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C+VDK HRNQC+ACRL KCL +GMNK+ QH
Sbjct: 32 GKCLVDKTHRNQCRACRLTKCLEIGMNKEAVQH 64
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
E +C+VDK HRNQC+ACRL KCL +GMNK+
Sbjct: 31 EGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 61
>gi|391342683|ref|XP_003745645.1| PREDICTED: COUP transcription factor 1-like [Metaseiulus
occidentalis]
Length = 465
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + R+ +C+ G G C+VD A RNQCQACRLKKCL +
Sbjct: 89 RHYGVASCDGCRGFFKRSV----RRDLRFSCKEG-GTCVVDVARRNQCQACRLKKCLAVN 143
Query: 64 MNKDDAQH 71
M ++ QH
Sbjct: 144 MRREAVQH 151
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD A RNQCQACRLKKCL + M ++
Sbjct: 121 CVVDVARRNQCQACRLKKCLAVNMRREA 148
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + RN C+ G GRCIV+ RNQCQACR +KCL +
Sbjct: 206 RHYGVYSCDGCRGFFKRSV----RRNLAYVCRDG-GRCIVNVPRRNQCQACRYRKCLAVN 260
Query: 64 MNKDDAQH 71
MN+D QH
Sbjct: 261 MNRDAVQH 268
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIV+ RNQCQACR +KCL + MN+D
Sbjct: 237 RCIVNVPRRNQCQACRYRKCLAVNMNRDA 265
>gi|402585073|gb|EJW79013.1| tailless, partial [Wuchereria bancrofti]
Length = 312
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C+VDK HRNQC+ACRL KCL +GMNK+ QH
Sbjct: 56 GKCLVDKTHRNQCRACRLTKCLEIGMNKEAVQH 88
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
E +C+VDK HRNQC+ACRL KCL +GMNK+
Sbjct: 55 EGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 85
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G++ C+ +R I RN C+ GRCIVD RNQCQACR KKCL +
Sbjct: 27 KHYGVSSCDGCRGFFKRSI----RRNLEYVCKE-NGRCIVDVTRRNQCQACRFKKCLQVN 81
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 82 MKRDAVQH 89
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD RNQCQACR KKCL + M +D
Sbjct: 58 RCIVDVTRRNQCQACRFKKCLQVNMKRDA 86
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 28 RNQCQACQA--GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A G G C VDK HRNQC++CRLKKC + MNKD QH
Sbjct: 59 RNRSYTCRATNGKGNCPVDKIHRNQCRSCRLKKCFEVTMNKDAVQH 104
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRNQC++CRLKKC + MNKD
Sbjct: 74 CPVDKIHRNQCRSCRLKKCFEVTMNKDA 101
>gi|170589101|ref|XP_001899312.1| nuclear receptor NHR-67 [Brugia malayi]
gi|158593525|gb|EDP32120.1| nuclear receptor NHR-67, putative [Brugia malayi]
Length = 328
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C+VDK HRNQC+ACRL KCL +GMNK+ QH
Sbjct: 71 GKCLVDKTHRNQCRACRLTKCLEIGMNKEAVQH 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
E +C+VDK HRNQC+ACRL KCL +GMNK+
Sbjct: 70 EGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 100
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++ + G C VDK HRNQC+ACRL+KC+
Sbjct: 36 KHYGIYACDGCAGFFKRSI----RRNRQYICKSKSEGACPVDKTHRNQCRACRLRKCMLS 91
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 92 GMNKDAVQH 100
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + E C VDK HRNQC+ACRL+KC+ GMNKD
Sbjct: 59 QYICKSKSEGACPVDKTHRNQCRACRLRKCMLSGMNKDA 97
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+A + G C+VDK HRNQC+ACRL KC+ GMNKD QH
Sbjct: 36 RNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQH 80
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C E C+VDK HRNQC+ACRL KC+ GMNKD
Sbjct: 39 QYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDA 77
>gi|324520018|gb|ADY47539.1| Nuclear hormone receptor family member nhr-67, partial [Ascaris
suum]
Length = 313
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C+VDK HRNQC+ACRL KCL +GMNK+ QH
Sbjct: 68 GKCLVDKTHRNQCRACRLTKCLEIGMNKEAVQH 100
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
E +C+VDK HRNQC+ACRL KCL +GMNK+
Sbjct: 67 EGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 97
>gi|332019107|gb|EGI59632.1| Nuclear receptor subfamily 2 group C member 2 [Acromyrmex
echinatior]
Length = 554
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ GT C V K HRN+CQ CRL+KCL MG
Sbjct: 167 RHYGAISCEGCKGDFKRSI-RKQLGYQCR----GTKSCEVTKHHRNRCQYCRLQKCLAMG 221
Query: 64 MNKDDAQHLKNSLLYEFACTNL 85
M D QH + +L + A T +
Sbjct: 222 MRSDSVQHERKPVLGDSAGTKV 243
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 199 CEVTKHHRNRCQYCRLQKCLAMGMRSD 225
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I A RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSIRRYA-RNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 78
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 79 MKRDAVQH 86
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 55 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 83
>gi|72255746|gb|AAW88544.2| PNR [Schistosoma mansoni]
Length = 67
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C +R R CQAG G CI+DKAHRNQCQACR+KKC+ MG
Sbjct: 11 KHYGILACNGCSGFFKR----SVRRKLIYRCQAGNGLCIIDKAHRNQCQACRMKKCIRMG 66
Query: 64 M 64
M
Sbjct: 67 M 67
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 23/24 (95%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI+DKAHRNQCQACR+KKC+ MGM
Sbjct: 44 CIIDKAHRNQCQACRMKKCIRMGM 67
>gi|195342846|ref|XP_002038009.1| GM18579 [Drosophila sechellia]
gi|194132859|gb|EDW54427.1| GM18579 [Drosophila sechellia]
Length = 184
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+A GRC VDK HRNQC+ACRL KC
Sbjct: 23 KHYGIYSCDGCSGFFKRSI----HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCF 78
Query: 61 NMGMNKDDAQH 71
MNKD QH
Sbjct: 79 QSAMNKDAVQH 89
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKD 85
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|383862587|ref|XP_003706765.1| PREDICTED: uncharacterized protein LOC100878424 [Megachile
rotundata]
Length = 991
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 198 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKSCEVTKHHRNRCQYCRLQKCLAMG 252
Query: 64 MNKDDAQHLKNSLLYEFACTNL 85
M D QH + +L E A T +
Sbjct: 253 MRSDSVQHERKPVLGESAGTKV 274
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 230 CEVTKHHRNRCQYCRLQKCLAMGMRSD 256
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|350400753|ref|XP_003485947.1| PREDICTED: hypothetical protein LOC100747039 [Bombus impatiens]
Length = 992
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 199 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKSCEVTKHHRNRCQYCRLQKCLAMG 253
Query: 64 MNKDDAQHLKNSLLYEFACTNL 85
M D QH + +L E A T +
Sbjct: 254 MRSDSVQHERKPVLGESAGTKV 275
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 231 CEVTKHHRNRCQYCRLQKCLAMGMRSD 257
>gi|340710944|ref|XP_003394042.1| PREDICTED: hypothetical protein LOC100642195 [Bombus terrestris]
Length = 992
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 199 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKSCEVTKHHRNRCQYCRLQKCLAMG 253
Query: 64 MNKDDAQHLKNSLLYEFACTNL 85
M D QH + +L E A T +
Sbjct: 254 MRSDSVQHERKPVLGESAGTKV 275
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 231 CEVTKHHRNRCQYCRLQKCLAMGMRSD 257
>gi|357615819|gb|EHJ69847.1| hypothetical protein KGM_01261 [Danaus plexippus]
Length = 120
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT---GRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+AG GRC VDK HRNQC+ACRL KC
Sbjct: 28 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAGGEMKGRCPVDKTHRNQCRACRLAKCF 83
Query: 61 NMGMNKD--DAQHLKNSLL 77
MNKD A LK L
Sbjct: 84 QANMNKDVVVAWRLKGPPL 102
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 21/28 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RC VDK HRNQC+ACRL KC MNKD
Sbjct: 63 RCPVDKTHRNQCRACRLAKCFQANMNKD 90
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++ +C VDK HRNQC+ACRL KC+
Sbjct: 27 KHYGIYACDGCAGFFKRSI----RRNRQYVCKSRNQDKCPVDKTHRNQCRACRLNKCVKS 82
Query: 63 GMNKDDAQH 71
GMN+D QH
Sbjct: 83 GMNRDAVQH 91
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + +C VDK HRNQC+ACRL KC+ GMN+D
Sbjct: 50 QYVCKSRNQDKCPVDKTHRNQCRACRLNKCVKSGMNRDA 88
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C +R I H C+ +C VDK HRNQC+ACRL+KCL G
Sbjct: 53 KHYGIYACDGCAGFFKRSIRRNRHY-ICKGRGTQANQCPVDKTHRNQCRACRLRKCLEAG 111
Query: 64 MNKDDAQH---LKNSLLYEFACTNLVEL 88
MN++ QH +NS L A L E+
Sbjct: 112 MNREAVQHERGPRNSTLRRQAAMYLKEV 139
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C VDK HRNQC+ACRL+KCL GMN++
Sbjct: 88 QCPVDKTHRNQCRACRLRKCLEAGMNREA 116
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 28 RNQCQACQ-AGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
RN+ C+ G G C +DK HRNQC+ACRLKKC+ + MNKD QH
Sbjct: 46 RNRQYVCKNKGNGPCPIDKTHRNQCRACRLKKCVQVDMNKDAVQH 90
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C N C +DK HRNQC+ACRLKKC+ + MNKD
Sbjct: 49 QYVCKNKGNGPCPIDKTHRNQCRACRLKKCVQVDMNKDA 87
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R + RN C+ CIVD RNQCQACR KKCL +
Sbjct: 33 KHYGVYSCDGCRGFFKRSV----RRNLAYVCKENNN-CIVDVTRRNQCQACRFKKCLEVR 87
Query: 64 MNKDDAQHLKNSLLYEF 80
MNKD QH + Y++
Sbjct: 88 MNKDAVQHERAPRCYQY 104
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVD RNQCQACR KKCL + MNKD
Sbjct: 65 CIVDVTRRNQCQACRFKKCLEVRMNKDA 92
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|195576854|ref|XP_002078288.1| GD23369 [Drosophila simulans]
gi|194190297|gb|EDX03873.1| GD23369 [Drosophila simulans]
Length = 468
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 27 HRNQCQACQAGT---GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75
HRN+ C+A GRC VDK HRNQC+ACRL KC MNKD QH +
Sbjct: 42 HRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQHERGP 93
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 77 LYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+Y T ++ RC VDK HRNQC+ACRL KC MNKD
Sbjct: 46 IYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKD 85
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 22 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 76
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 77 MKRDAVQH 84
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 53 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 81
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>gi|357602940|gb|EHJ63582.1| hypothetical protein KGM_12726 [Danaus plexippus]
Length = 142
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT---GRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I HRN+ C+AG GRC VDK HRNQC+ACRL KC
Sbjct: 73 KHYGIYSCDGCSGFFKRSI----HRNRVYTCKAGGEMKGRCPVDKTHRNQCRACRLAKCF 128
Query: 61 NMGMNKDDAQHL 72
MNKD L
Sbjct: 129 QANMNKDGEFQL 140
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
RC VDK HRNQC+ACRL KC MNKDG+
Sbjct: 108 RCPVDKTHRNQCRACRLAKCFQANMNKDGE 137
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+G C+++K HRN+CQ CRL++C+ +G
Sbjct: 123 RHYGAVSCEGCKGFFKRSI----RKNLVYTCR-GSGECVINKHHRNRCQYCRLQRCMALG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ +GM +D
Sbjct: 155 CVINKHHRNRCQYCRLQRCMALGMKQD 181
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ GRCIVD + RNQCQACR KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKE-NGRCIVDVSRRNQCQACRFTKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD + RNQCQACR KCL + M +D
Sbjct: 52 RCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|380014638|ref|XP_003691332.1| PREDICTED: uncharacterized protein LOC100870376 [Apis florea]
Length = 992
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 199 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKSCEVTKHHRNRCQYCRLQKCLAMG 253
Query: 64 MNKDDAQHLKNSLLYEFA 81
M D QH + +L E A
Sbjct: 254 MRSDSVQHERKPVLGESA 271
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 231 CEVTKHHRNRCQYCRLQKCLAMGMRSD 257
>gi|328786232|ref|XP_392769.4| PREDICTED: hypothetical protein LOC409246 [Apis mellifera]
Length = 992
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 199 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKSCEVTKHHRNRCQYCRLQKCLAMG 253
Query: 64 MNKDDAQHLKNSLLYEFA 81
M D QH + +L E A
Sbjct: 254 MRSDSVQHERKPVLGESA 271
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 231 CEVTKHHRNRCQYCRLQKCLAMGMRSD 257
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+G C+++K HRN+CQ CRL++C+ +G
Sbjct: 108 RHYGAVSCEGCKGFFKRSI----RKNLVYTCR-GSGECVINKHHRNRCQYCRLQRCMALG 162
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 163 MKQDSVQ 169
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ +GM +D
Sbjct: 140 CVINKHHRNRCQYCRLQRCMALGMKQD 166
>gi|256082368|ref|XP_002577429.1| zinc finger protein [Schistosoma mansoni]
gi|353232857|emb|CCD80213.1| putative zinc finger protein [Schistosoma mansoni]
Length = 408
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 35 QAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
++G C VDK+HRNQC+ACRL KCL +GMNKD QH
Sbjct: 57 KSGIVVCRVDKSHRNQCRACRLTKCLEVGMNKDAVQH 93
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK+HRNQC+ACRL KCL +GMNKD
Sbjct: 63 CRVDKSHRNQCRACRLTKCLEVGMNKDA 90
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAG---TGRCIVDKAHRNQCQACRLKKCL 60
+H G+ C +R I H+N+ C+A GRC +DK HRNQC+ACRL +C
Sbjct: 29 KHYGIYSCDGCSGFFKRSI----HKNRVYTCKASGEKKGRCPMDKTHRNQCRACRLTQCF 84
Query: 61 NMGMNKDDAQH 71
+ MNKD QH
Sbjct: 85 SADMNKDAVQH 95
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC +DK HRNQC+ACRL +C + MNKD
Sbjct: 64 RCPMDKTHRNQCRACRLTQCFSADMNKDA 92
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRL+KCL MG
Sbjct: 185 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRNCPIDQHHRNQCQFCRLRKCLKMG 239
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 240 MRREAVQ 246
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRL+KCL MGM ++
Sbjct: 217 CPIDQHHRNQCQFCRLRKCLKMGMRREA 244
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I H +CQ G G C ++K HRN+CQ CRLKKCL MG
Sbjct: 48 KHYGIVACEGCKGFFKRSIRKNLH----YSCQ-GNGACPINKVHRNRCQRCRLKKCLTMG 102
Query: 64 MNKDDAQHLKNSLLYEFACTNLVELRCIVDKAH 96
M ++ Q + L N ++R + H
Sbjct: 103 MKREAVQCERKPLEASRDMENGSDMRSVRTSFH 135
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C ++K HRN+CQ CRLKKCL MGM ++
Sbjct: 80 CPINKVHRNRCQRCRLKKCLTMGMKREA 107
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G G+C+VD + RNQCQACR KCL
Sbjct: 19 KHYGVPSCDGCRGFFKRSI----RRNLEYVCKEG-GKCVVDVSRRNQCQACRFAKCLQAN 73
Query: 64 MNKDDAQH 71
M ++ QH
Sbjct: 74 MRREAVQH 81
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD + RNQCQACR KCL M ++
Sbjct: 50 KCVVDVSRRNQCQACRFAKCLQANMRREA 78
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G+ C+ +R + H +CQ G G C VDK HRN+CQ CRL KCL
Sbjct: 9 TGKHYGIVACEGCKGFFKRSVRKNLHY-RCQ----GNGACPVDKVHRNRCQRCRLNKCLT 63
Query: 62 MGMNKDDAQ 70
MGM K+ Q
Sbjct: 64 MGMKKEAVQ 72
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRN+CQ CRL KCL MGM K+
Sbjct: 43 CPVDKVHRNRCQRCRLNKCLTMGMKKEA 70
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I H +CQ G G C ++K HRN+CQ CRLKKCL MG
Sbjct: 40 KHYGIVACEGCKGFFKRSIRKNLH----YSCQ-GNGACPINKVHRNRCQRCRLKKCLTMG 94
Query: 64 MNKDDAQHLKNSLLYEFACTNLVELRCIVDKAH 96
M ++ Q + L N ++R + H
Sbjct: 95 MKREAVQCERKPLEASRDMENGSDMRSVRTSFH 127
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C ++K HRN+CQ CRLKKCL MGM ++
Sbjct: 72 CPINKVHRNRCQRCRLKKCLTMGMKREA 99
>gi|328698474|ref|XP_001948311.2| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Acyrthosiphon pisum]
Length = 486
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ GT C V K HRN+CQ CRL+KCL MG
Sbjct: 32 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GTKMCEVTKNHRNRCQYCRLQKCLTMG 86
Query: 64 MNKDDAQH 71
M D QH
Sbjct: 87 MRSDSVQH 94
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 64 CEVTKNHRNRCQYCRLQKCLTMGMRSD 90
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
C VDKAHRNQCQACRLKKCL GMN+D Q
Sbjct: 2 CPVDKAHRNQCQACRLKKCLQAGMNQDAVQ 31
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 2 CPVDKAHRNQCQACRLKKCLQAGMNQDA 29
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+G C ++K HRN+CQ CRL++C+ +G
Sbjct: 130 RHYGAVSCEGCKGFFKRSI----RKNLVYTCR-GSGECAINKLHRNRCQYCRLQRCIALG 184
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 185 MKQDSVQ 191
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C ++K HRN+CQ CRL++C+ +GM +D
Sbjct: 162 CAINKLHRNRCQYCRLQRCIALGMKQD 188
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G+ +C +D+ HRNQCQ CRLKKCL MG
Sbjct: 93 KHYGQFTCEGCKSFFKRSV----RRNLTYTCR-GSRQCPIDQHHRNQCQYCRLKKCLKMG 147
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 148 MRREAVQ 154
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 124 QCPIDQHHRNQCQYCRLKKCLKMGMRREA 152
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 2 CPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 32
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 2 CPVDKAHRNQCQACRLKKCLQAGMNQDA 29
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C+VD A RNQCQACRLKKC + MNKD QH
Sbjct: 41 GKCVVDVARRNQCQACRLKKCFEVQMNKDAVQH 73
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD A RNQCQACRLKKC + MNKD
Sbjct: 42 KCVVDVARRNQCQACRLKKCFEVQMNKDA 70
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 2 CPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 32
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 2 CPVDKAHRNQCQACRLKKCLQAGMNQDA 29
>gi|322794241|gb|EFZ17417.1| hypothetical protein SINV_08914 [Solenopsis invicta]
Length = 547
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 160 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKSCEVTKHHRNRCQYCRLQKCLAMG 214
Query: 64 MNKDDAQHLKNSLLYEFACTNL 85
M D QH + +L E A +
Sbjct: 215 MRSDSVQHERKPVLGESAAAKV 236
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 192 CEVTKHHRNRCQYCRLQKCLAMGMRSD 218
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 209 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 263
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 264 MRREAVQ 270
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 241 CPIDQHHRNQCQYCRLKKCLKMGMRREA 268
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C VD+ HRNQCQ CRLKKCL +G
Sbjct: 107 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPVDQHHRNQCQYCRLKKCLKVG 161
Query: 64 MNKDDAQHLK---NSLLYEFACTNLVELRC 90
M ++ Q + S +FA TN L+C
Sbjct: 162 MRREAVQRGRIPTQSFHGQFALTNGDPLQC 191
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD+ HRNQCQ CRLKKCL +GM ++
Sbjct: 139 CPVDQHHRNQCQYCRLKKCLKVGMRREA 166
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
C+VDKAHRNQC+ACRLKKC + GMNK QH
Sbjct: 78 CVVDKAHRNQCRACRLKKCFDAGMNKHAVQH 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNK 115
++ C + + C+VDKAHRNQC+ACRLKKC + GMNK
Sbjct: 67 QYVCKSQKKTLCVVDKAHRNQCRACRLKKCFDAGMNK 103
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>gi|221131649|ref|XP_002156561.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Hydra magnipapillata]
Length = 419
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + RN AC+ G C++D RNQCQ CR ++CL +G
Sbjct: 45 RHYGVPSCDGCRGFFKRSV----RRNVSYACKF-QGECVIDLKRRNQCQFCRYQRCLKVG 99
Query: 64 MNKDDAQH 71
MNK+ QH
Sbjct: 100 MNKNAVQH 107
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C++D RNQCQ CR ++CL +GMNK+
Sbjct: 77 CVIDLKRRNQCQFCRYQRCLKVGMNKNA 104
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+G C ++K HRN+CQ CRL++C+ +G
Sbjct: 124 RHYGAVSCEGCKGFFKRSI----RKNLVYTCR-GSGECAINKLHRNRCQYCRLQRCIALG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C ++K HRN+CQ CRL++C+ +GM +D
Sbjct: 156 CAINKLHRNRCQYCRLQRCIALGMKQD 182
>gi|351709125|gb|EHB12044.1| Retinoic acid receptor alpha [Heterocephalus glaber]
Length = 549
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 51/158 (32%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 96 HYGVSACEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 150
Query: 65 NKDD----------------AQHL------------------------------KNSLLY 78
+K+ AQ + + S+
Sbjct: 151 SKESWRKVESGHPALVFPSGAQAMGSGCREDVGAAGVLGPPRSILGAVTVQGFFRRSIQK 210
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
T + CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 211 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKE 248
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74
CI++K RN+CQ CRL+KC +GM+K+ ++ +N
Sbjct: 222 CIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 255
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+G C ++K HRN+CQ CRL++C+ +G
Sbjct: 130 RHYGAVSCEGCKGFFKRSI----RKNLMYTCR-GSGECAINKLHRNRCQYCRLQRCIALG 184
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 185 MKQDSVQ 191
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C ++K HRN+CQ CRL++C+ +GM +D
Sbjct: 162 CAINKLHRNRCQYCRLQRCIALGMKQD 188
>gi|307210265|gb|EFN86915.1| Nuclear receptor subfamily 2 group C member 2 [Harpegnathos
saltator]
Length = 565
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 180 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKNCEVTKHHRNRCQYCRLQKCLAMG 234
Query: 64 MNKDDAQHLKNSLLYEFACTNL 85
M D QH + +L + T +
Sbjct: 235 MRSDSVQHERKPVLGDSTATKV 256
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 212 CEVTKHHRNRCQYCRLQKCLAMGMRSD 238
>gi|301617695|ref|XP_002938282.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R V K+ C++ Q C+++K HRN+CQ CRLKKCL MG
Sbjct: 126 RHYGAVSCEGCKGFFKRS-VRKSLTYSCRSSQ----DCVINKHHRNRCQFCRLKKCLEMG 180
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 181 MKMESVQ 187
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C+++K HRN+CQ CRLKKCL MGM
Sbjct: 158 CVINKHHRNRCQFCRLKKCLEMGM 181
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G G+C+VD + RNQCQACR KCL
Sbjct: 26 KHYGVPSCDGCRGFFKRSI----RRNLEYVCKEG-GKCVVDVSRRNQCQACRFAKCLQAN 80
Query: 64 MNKDDAQH 71
M ++ QH
Sbjct: 81 MRREAVQH 88
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD + RNQCQACR KCL M ++
Sbjct: 57 KCVVDVSRRNQCQACRFAKCLQANMRREA 85
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 208 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 262
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 263 MRREAVQ 269
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 240 CPIDQHHRNQCQYCRLKKCLKMGMRREA 267
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 146 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 200
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 201 MKMESVQ 207
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 178 CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL G
Sbjct: 176 KHYGVNTCEGCKSFFKRSV----RRNLQYTCRAKRN-CSIDQHHRNQCQHCRLKKCLKAG 230
Query: 64 MNKDDAQ 70
M KD Q
Sbjct: 231 MRKDAVQ 237
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 49 NQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKC 108
N C+ C+ K S+ T + C +D+ HRNQCQ CRLKKC
Sbjct: 181 NTCEGCK--------------SFFKRSVRRNLQYTCRAKRNCSIDQHHRNQCQHCRLKKC 226
Query: 109 LNMGMNKDG 117
L GM KD
Sbjct: 227 LKAGMRKDA 235
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 179 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 233
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 234 MKMESVQ 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 211 CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 146 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 200
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 201 MKMESVQ 207
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 178 CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 215 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 269
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 270 MRREAVQ 276
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 247 CPIDQHHRNQCQYCRLKKCLKMGMRREA 274
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 179 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 233
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 234 MKMESVQ 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 211 CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 179 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 233
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 234 MKMESVQ 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 211 CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 140 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 194
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 195 MKMESVQ 201
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 172 CIINKHHRNRCQFCRLKKCLEMGM 195
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 179 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 233
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 234 MKMESVQ 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 211 CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 142 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 196
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 197 MKMESVQ 203
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 174 CIINKHHRNRCQFCRLKKCLEMGM 197
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 146 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 200
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 201 MKMESVQ 207
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 178 CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 141 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 195
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 196 MKMESVQ 202
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 173 CIINKHHRNRCQFCRLKKCLEMGM 196
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 206 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 260
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 261 MRREAVQ 267
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 238 CPIDQHHRNQCQYCRLKKCLKMGMRREA 265
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + C+++K HRN+CQ CRLKKCL MG
Sbjct: 147 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCVINKHHRNRCQFCRLKKCLEMG 201
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 202 MKMESVQ 208
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C+++K HRN+CQ CRLKKCL MGM
Sbjct: 179 CVINKHHRNRCQFCRLKKCLEMGM 202
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 206 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 260
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 261 MRREAVQ 267
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 238 CPIDQHHRNQCQYCRLKKCLKMGMRREA 265
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|1144348|gb|AAC18408.1| TR4, partial [Mus musculus]
Length = 608
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 139 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 193
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 194 MKMESVQ 200
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 171 CIINKHHRNRCQFCRLKKCLEMGM 194
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 105 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 159
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 160 MRREAVQ 166
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 137 CPIDQHHRNQCQYCRLKKCLKMGMRREA 164
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 140 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 194
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 195 MKMESVQ 201
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 172 CIINKHHRNRCQFCRLKKCLEMGM 195
>gi|339248543|ref|XP_003373259.1| COUP transcription factor 1 [Trichinella spiralis]
gi|316970658|gb|EFV54551.1| COUP transcription factor 1 [Trichinella spiralis]
Length = 490
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D HRNQCQ CRLKKC+ MG
Sbjct: 200 KHYGQFTCEGCKSFFKRSV----RRNLTYTCR-GNKNCSIDVHHRNQCQYCRLKKCVKMG 254
Query: 64 MNKDDAQHLKNSLLYEFACTNLVELRCIVDKAH 96
M K+ H +S + F E++C + H
Sbjct: 255 MRKEVGNHNAHSSVSTF------EVQCSIFSYH 281
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D HRNQCQ CRLKKC+ MGM K+
Sbjct: 232 CSIDVHHRNQCQYCRLKKCVKMGMRKE 258
>gi|71994414|ref|NP_507060.2| Protein NHR-111 [Caenorhabditis elegans]
gi|74959287|sp|O45521.2|NH111_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-111
gi|34555901|emb|CAB05521.2| Protein NHR-111 [Caenorhabditis elegans]
Length = 311
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 12 PTCQ--AGTERCIVDKAHRNQ-CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDD 68
PTC +G R V RN+ C G G C++DKA+RN+C++CR+KKC GMNK+
Sbjct: 57 PTCFGCSGFFRRTV----RNKLVHGCWNGDGNCVIDKANRNRCKSCRIKKCFKKGMNKNA 112
Query: 69 AQHLKNSLLYEFACTNLVELR 89
Q + S Y L R
Sbjct: 113 VQPERTSHSYTVEYVELPSFR 133
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C++DKA+RN+C++CR+KKC GMNK+
Sbjct: 85 CVIDKANRNRCKSCRIKKCFKKGMNKNA 112
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKC+ MG
Sbjct: 91 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSTNCPIDQHHRNQCQYCRLKKCMKMG 145
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 146 MRREAVQ 152
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC+ MGM ++
Sbjct: 123 CPIDQHHRNQCQYCRLKKCMKMGMRREA 150
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 147 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 201
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 202 MKMESVQ 208
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 179 CIINKHHRNRCQFCRLKKCLEMGM 202
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + C+++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCVINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C+++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CVINKHHRNRCQFCRLKKCLEMGM 182
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRL+KCL MG
Sbjct: 163 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRNCPIDQHHRNQCQFCRLRKCLKMG 217
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 218 MRREAVQ 224
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRL+KCL MGM ++
Sbjct: 195 CPIDQHHRNQCQFCRLRKCLKMGMRREA 222
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRL+KCL MG
Sbjct: 185 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRNCPIDQHHRNQCQFCRLRKCLKMG 239
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 240 MRREAVQ 246
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRL+KCL MGM ++
Sbjct: 217 CPIDQHHRNQCQFCRLRKCLKMGMRREA 244
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 142 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 196
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 197 MKMESVQ 203
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 174 CIINKHHRNRCQFCRLKKCLEMGM 197
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 142 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 196
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 197 MKMESVQ 203
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 174 CIINKHHRNRCQFCRLKKCLEMGM 197
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + RN C+ G C VD A RNQCQACRL+KC ++
Sbjct: 34 RHYGVFTCDGCRGFFKRAV----RRNLLFLCKE-NGNCQVDVARRNQCQACRLRKCYDVH 88
Query: 64 MNKDDAQHLKNSLL 77
MN+D QH ++ L
Sbjct: 89 MNRDAVQHERSPRL 102
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD A RNQCQACRL+KC ++ MN+D
Sbjct: 66 CQVDVARRNQCQACRLRKCYDVHMNRDA 93
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G++ C+ +R I RN C+ GRCIVD RNQCQACR KKCL +
Sbjct: 24 KHYGVSSCDGCRGFFKRSI----RRNLEYVCKEN-GRCIVDVTRRNQCQACRFKKCLQVN 78
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 79 MKRDAVQH 86
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RCIVD RNQCQACR KKCL + M +D
Sbjct: 55 RCIVDVTRRNQCQACRFKKCLQVNMKRDA 83
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 103 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 157
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 158 MKMESVQ 164
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 135 CIINKHHRNRCQFCRLKKCLEMGM 158
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 103 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 157
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 158 MKMESVQ 164
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 135 CIINKHHRNRCQFCRLKKCLEMGM 158
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 146 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 200
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 201 MKMESVQ 207
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 178 CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|313240854|emb|CBY33143.1| unnamed protein product [Oikopleura dioica]
Length = 619
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
++ +N + +G C+VD+ +RN+CQACRLKKCL +GM++D
Sbjct: 68 RSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKKCLGLGMSRD 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQACRLKKCL +GM++D
Sbjct: 84 CVVDRTNRNRCQACRLKKCLGLGMSRDA 111
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 122 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 176
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 177 MKMESVQ 183
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 154 CIINKHHRNRCQFCRLKKCLEMGM 177
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 205 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 259
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 260 MRREAVQ 266
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 237 CPIDQHHRNQCQYCRLKKCLKMGMRREA 264
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 206 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 260
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 261 MRREAVQ 267
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 238 CPIDQHHRNQCQYCRLKKCLKMGMRREA 265
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 123 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 177
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 178 MKMESVQ 184
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 155 CIINKHHRNRCQFCRLKKCLEMGM 178
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKC+ MG
Sbjct: 91 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCMKMG 145
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 146 MRREAVQ 152
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC+ MGM ++
Sbjct: 123 CPIDQHHRNQCQYCRLKKCMKMGMRREA 150
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKDDAQHLK---NSLLYEFACTNLVELRC 90
M ++ Q + S +FA TN L+C
Sbjct: 141 MRREAVQRGRIPTQSYHGQFALTNGDPLQC 170
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 118 CPIDQHHRNQCQYCRLKKCLKVGMRREA 145
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 119 KHYGQFTCEGCKSFFKRSV----RRNLNYTCR-GNRSCPIDQHHRNQCQYCRLKKCLKVG 173
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 174 MRREAVQ 180
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 151 CPIDQHHRNQCQYCRLKKCLKVGMRREA 178
>gi|322786992|gb|EFZ13216.1| hypothetical protein SINV_06354 [Solenopsis invicta]
Length = 64
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 8 MTDHPTCQAGTERCIVDKAHRNQ---CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
+ P C +R I H N+ C+A A GRC +DK HRNQC+ACRL KC M
Sbjct: 1 FSWFPGCSGFFKRSI----HSNREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCFEANM 56
Query: 65 NKDDAQH 71
NKD +
Sbjct: 57 NKDGKYY 63
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
RC +DK HRNQC+ACRL KC MNKDGK
Sbjct: 32 RCPIDKTHRNQCRACRLAKCFEANMNKDGK 61
>gi|307170857|gb|EFN62968.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 226
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 31 CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHL 72
C+A A GRC +DK HRNQC+ACRL KC MNKD+ L
Sbjct: 95 CKAQGAKKGRCPIDKTHRNQCRACRLAKCFEANMNKDEVSEL 136
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RC +DK HRNQC+ACRL KC MNKD
Sbjct: 104 RCPIDKTHRNQCRACRLAKCFEANMNKD 131
>gi|2500914|sp|Q91573.1|MCR_XENLA RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|994836|gb|AAA75574.1| mineralocorticoid receptor, partial [Xenopus laevis]
Length = 612
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + K R C AG CI+DK R C ACRL+KCL GM
Sbjct: 240 HYGVVTCGSCKVFFKRAVEGKCSRQHSYLC-AGRNDCIIDKIRRKNCPACRLQKCLQAGM 298
Query: 65 N 65
N
Sbjct: 299 N 299
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 275 CIIDKIRRKNCPACRLQKCLQAGMN 299
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRLKKCL MG
Sbjct: 116 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRTCPIDQHHRNQCQYCRLKKCLKMG 170
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 171 MRREAVQ 177
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 148 CPIDQHHRNQCQYCRLKKCLKMGMRREA 175
>gi|313228671|emb|CBY07463.1| unnamed protein product [Oikopleura dioica]
Length = 578
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
++ +N + +G C+VD+ +RN+CQACRLKKCL +GM++D
Sbjct: 68 RSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKKCLGLGMSRD 110
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQACRLKKCL +GM++D
Sbjct: 84 CVVDRTNRNRCQACRLKKCLGLGMSRDA 111
>gi|374670309|gb|AEZ56119.1| nuclear receptor TLX-1 [Schmidtea mediterranea]
Length = 373
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G C +DK HRNQC+ACRL+KC++ GMNK+ QH
Sbjct: 62 GICKIDKTHRNQCRACRLQKCVDSGMNKEAVQH 94
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +DK HRNQC+ACRL+KC++ GMNK+
Sbjct: 64 CKIDKTHRNQCRACRLQKCVDSGMNKEA 91
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + C+++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCVINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C+++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CVINKHHRNRCQFCRLKKCLEMGM 182
>gi|270008090|gb|EFA04538.1| hormone receptor 83 [Tribolium castaneum]
Length = 1502
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMN 65
RN C +G GRCIVDKA RN C CRL++C ++ MN
Sbjct: 1260 RNIIYTCISGEGRCIVDKARRNWCPYCRLQRCFSVQMN 1297
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMN 114
E RCIVDKA RN C CRL++C ++ MN
Sbjct: 1270 EGRCIVDKARRNWCPYCRLQRCFSVQMN 1297
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G C+VD A RNQCQACR KKCL+
Sbjct: 13 KHYGVYSCDGCRGFFKRSI----RRNLAYICKE-NGSCVVDVARRNQCQACRFKKCLDAQ 67
Query: 64 MNKDDAQH-----LKNSLLYEF 80
MNKD + LKN+ + F
Sbjct: 68 MNKDGFRQCNHLLLKNTPPFSF 89
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD A RNQCQACR KKCL+ MNKDG
Sbjct: 45 CVVDVARRNQCQACRFKKCLDAQMNKDG 72
>gi|121484050|gb|ABM54351.1| NR2E1 [Pan paniscus]
gi|122892562|gb|ABM67332.1| NR2E1 [Hylobates klossii]
Length = 77
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 17 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 72
Query: 63 GMNKD 67
MNKD
Sbjct: 73 NMNKD 77
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 41 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKD 77
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRL+KCL MG
Sbjct: 90 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRSCPIDQHHRNQCQFCRLRKCLKMG 144
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 145 MRREAVQ 151
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 10 DHPTCQAGTERCIVDKAHRNQCQACQAGT---GRCIVDKAHRNQCQACRLK---KCLNMG 63
DHP + G + H A QA + G DK +C C K K
Sbjct: 36 DHPPLELGFRGSWREDEHLPSTPASQAASTQSGSSATDKGQNVECVVCGDKSSGKHYGQF 95
Query: 64 MNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ K S+ + C +D+ HRNQCQ CRL+KCL MGM ++
Sbjct: 96 TCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREA 149
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+G C ++K HRN+CQ CRL++C+ +G
Sbjct: 124 RHYGAVSCEGCKGFFKRSI----RKNLVYTCR-GSGECAINKLHRNRCQYCRLQRCIALG 178
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 179 MKQESVQ 185
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C ++K HRN+CQ CRL++C+ +GM ++
Sbjct: 156 CAINKLHRNRCQYCRLQRCIALGMKQE 182
>gi|343958546|dbj|BAK63128.1| orphan nuclear receptor TR2 [Pan troglodytes]
Length = 604
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N AC+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYACR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C VD+ HRNQCQ CRLKKCL MG
Sbjct: 35 KHYGQFTCEGCKSFFKRSV----RRNLSYSCR-GNRNCPVDQHHRNQCQYCRLKKCLKMG 89
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 90 MRREAVQ 96
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD+ HRNQCQ CRLKKCL MGM ++
Sbjct: 67 CPVDQHHRNQCQYCRLKKCLKMGMRREA 94
>gi|332840360|ref|XP_001137621.2| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan troglodytes]
gi|397473630|ref|XP_003808309.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan paniscus]
gi|410209720|gb|JAA02079.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410255878|gb|JAA15906.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410298356|gb|JAA27778.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410342159|gb|JAA40026.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
Length = 604
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N AC+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYACR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|45708743|gb|AAH51670.1| NR2C2 protein [Homo sapiens]
gi|313882494|gb|ADR82733.1| Unknown protein [synthetic construct]
Length = 530
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 146 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 200
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 201 MKMESVQ 207
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 178 CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRLKKCL MG
Sbjct: 61 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRNCPIDQHHRNQCQFCRLKKCLKMG 115
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 116 MRREAVQ 122
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 93 CPIDQHHRNQCQFCRLKKCLKMGMRREA 120
>gi|390979833|gb|AFM30922.1| KNIRPS2 [Parhyale hawaiensis]
Length = 692
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 29 NQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVEL 88
+Q C+ G G+C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C L++
Sbjct: 37 SQIHECKNG-GQCVINKQNRTSCKACRLRKCLVVGMSKTGSRYGRRSNWFKIHC--LLQE 93
Query: 89 RC 90
+C
Sbjct: 94 QC 95
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 47 QCVINKQNRTSCKACRLRKCLVVGMSKTG 75
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN +C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 64 KHYGVFTCEGCKSFFKRSI----RRNLSYSCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 118
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 119 MRKEAVQ 125
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 96 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 123
>gi|126339675|ref|XP_001370429.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Monodelphis domestica]
Length = 605
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|351712230|gb|EHB15149.1| Nuclear receptor subfamily 2 group C member 1 [Heterocephalus
glaber]
Length = 606
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 125 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 179
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 180 MKQDSVQ 186
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 157 CIINKHHRNRCQYCRLQRCIAFGMKQD 183
>gi|313214248|emb|CBY42707.1| unnamed protein product [Oikopleura dioica]
Length = 479
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
++ +N + +G C+VD+ +RN+CQACRLKKCL +GM++D
Sbjct: 68 RSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKKCLGLGMSRD 110
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQACRLKKCL +GM++D
Sbjct: 84 CVVDRTNRNRCQACRLKKCLGLGMSRDA 111
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R + RN C+ C +D A RNQCQACRL+KC M
Sbjct: 14 KHYGVMTCDGCRGFFKRSV----RRNLAYQCKE-KNDCPIDVARRNQCQACRLRKCFEMN 68
Query: 64 MNKDDAQH 71
MN+D QH
Sbjct: 69 MNRDAVQH 76
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D A RNQCQACRL+KC M MN+D
Sbjct: 46 CPIDVARRNQCQACRLRKCFEMNMNRDA 73
>gi|332031567|gb|EGI71039.1| Knirps-related protein [Acromyrmex echinatior]
Length = 428
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIV 92
AC+ G G CI++K +R C+ACRLKKCL++GM+K +++ + S N ++
Sbjct: 54 ACKNG-GNCIINKRNRTACKACRLKKCLDVGMSKSSSRYGRRS--------NWFKITYFS 104
Query: 93 DKAHRNQCQACRLK 106
D+ RN + L+
Sbjct: 105 DQMRRNPNEMASLR 118
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNK 115
CI++K +R C+ACRLKKCL++GM+K
Sbjct: 61 CIINKRNRTACKACRLKKCLDVGMSK 86
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ + +C+VD + RNQCQACR +KCL +
Sbjct: 21 KHYGVPSCDGCRGFFKRSI----RRNLDYVCKENS-QCVVDVSRRNQCQACRFRKCLQVN 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD + RNQCQACR +KCL + M +D
Sbjct: 52 QCVVDVSRRNQCQACRFRKCLQVNMKRDA 80
>gi|444726663|gb|ELW67187.1| Usher syndrome type-1C protein-binding protein 1 [Tupaia chinensis]
Length = 767
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 656 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 710
Query: 64 MNKDDA 69
M K+DA
Sbjct: 711 MRKEDA 716
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 688 CQIDQHHRNQCQYCRLKKCFRVGMRKE 714
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ GT C+++K HRN+CQ CRL++C+ G
Sbjct: 160 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GTRDCVINKHHRNRCQYCRLQRCIAFG 214
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 215 MKQDSVQ 221
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 192 CVINKHHRNRCQYCRLQRCIAFGMKQD 218
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R V K+ C++ Q C+++K HRN+CQ CRL+KCL MG
Sbjct: 157 RHYGAVSCEGCKGFFKRS-VRKSLTYSCRSNQ----DCVINKHHRNRCQFCRLRKCLEMG 211
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 212 MKMESVQ 218
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C+++K HRN+CQ CRL+KCL MGM
Sbjct: 189 CVINKHHRNRCQFCRLRKCLEMGM 212
>gi|73909187|gb|AAI03687.1| Nr2c2 protein [Mus musculus]
Length = 501
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|324504879|gb|ADY42104.1| Nuclear hormone receptor family member nhr-40 [Ascaris suum]
Length = 564
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K QCQ + CIVDK+ R C++CRLKKC MGMN + QH +
Sbjct: 114 CKTFFRRALVNK-QAFQCQF----SDDCIVDKSVRCGCRSCRLKKCFQMGMNPNAIQHDR 168
Query: 74 NSLLY 78
+ + Y
Sbjct: 169 DKIRY 173
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDK+ R C++CRLKKC MGMN +
Sbjct: 136 CIVDKSVRCGCRSCRLKKCFQMGMNPNA 163
>gi|449266899|gb|EMC77883.1| Nuclear receptor subfamily 2 group C member 1 [Columba livia]
Length = 640
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ GT C+++K HRN+CQ CRL++C+ G
Sbjct: 160 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GTKDCVINKHHRNRCQYCRLQRCIAFG 214
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 215 MKQDSVQ 221
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 192 CVINKHHRNRCQYCRLQRCIAFGMKQD 218
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CRLKKCL MG
Sbjct: 67 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRNCPIDQHHRNQCQFCRLKKCLKMG 121
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 122 MRREAVQ 128
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 99 CPIDQHHRNQCQFCRLKKCLKMGMRREA 126
>gi|426224304|ref|XP_004006312.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Ovis
aries]
Length = 608
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 404 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 458
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 459 MRKEAVQ 465
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 436 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 463
>gi|354478543|ref|XP_003501474.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Cricetulus griseus]
gi|344252291|gb|EGW08395.1| Nuclear receptor subfamily 2 group C member 1 [Cricetulus griseus]
Length = 590
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CIINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|326911680|ref|XP_003202184.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Meleagris gallopavo]
Length = 562
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ GT C+++K HRN+CQ CRL++C+ G
Sbjct: 83 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GTKDCVINKHHRNRCQYCRLQRCIAFG 137
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 138 MKQDSVQ 144
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 115 CVINKHHRNRCQYCRLQRCIAFGMKQD 141
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+A C +D+ HRNQCQ CRLKKCL MG
Sbjct: 151 KHYGQFTCEGCKSFFKRSV----RRNLTYSCRANRN-CPIDQHHRNQCQYCRLKKCLKMG 205
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 206 MRREAVQ 212
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 183 CPIDQHHRNQCQYCRLKKCLKMGMRREA 210
>gi|440892538|gb|ELR45692.1| Nuclear receptor subfamily 2 group C member 1 [Bos grunniens mutus]
Length = 618
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|311256682|ref|XP_003126756.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus
scrofa]
Length = 605
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G T C+ +R I R Q G C V+K HRN+CQ CRL+KCL +G
Sbjct: 189 RHYGCTSCEGCKGFFKRSI-----RKQLGYACRGNKDCPVNKPHRNRCQYCRLQKCLAVG 243
Query: 64 MNKDDAQH 71
M + Q
Sbjct: 244 MRAESVQQ 251
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V+K HRN+CQ CRL+KCL +GM +
Sbjct: 221 CPVNKPHRNRCQYCRLQKCLAVGMRAE 247
>gi|358332828|dbj|GAA51438.1| nuclear receptor subfamily 2 group C member 2 [Clonorchis sinensis]
Length = 1789
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQ-CQACQAGTGRCIVDKAHRNQCQACRLKKCLNM 62
RH G+ C+ +R I + H + C++ Q C+V+KA+RN+CQ CRL+KCL +
Sbjct: 680 RHYGVVSCEGCKGFFKRSI--RGHVSYVCRSDQ----NCLVNKAYRNRCQYCRLQKCLLV 733
Query: 63 GMNKDDAQHLKN-SLLYEFA 81
GM + Q+ + S YEF
Sbjct: 734 GMRSEAVQNERRPSTAYEFG 753
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+V+KA+RN+CQ CRL+KCL +GM +
Sbjct: 712 CLVNKAYRNRCQYCRLQKCLLVGMRSEA 739
>gi|296487946|tpg|DAA30059.1| TPA: nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL MG
Sbjct: 112 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKMG 166
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 167 MRREAVQ 173
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 144 CPIDQHHRNQCQYCRLKKCLKMGMRREA 171
>gi|45383862|ref|NP_989455.1| nuclear receptor subfamily 2 group C member 1 [Gallus gallus]
gi|21518633|gb|AAM60748.1|AF323691_1 testis-specific receptor 2-like protein TRR [Gallus gallus]
Length = 569
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ GT C+++K HRN+CQ CRL++C+ G
Sbjct: 83 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GTKDCVINKHHRNRCQYCRLQRCIAFG 137
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 138 MKQDSVQ 144
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 115 CVINKHHRNRCQYCRLQRCIAFGMKQD 141
>gi|224094384|ref|XP_002188160.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Taeniopygia guttata]
Length = 563
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ GT C+++K HRN+CQ CRL++C+ G
Sbjct: 83 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GTKDCVINKHHRNRCQYCRLQRCIAFG 137
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 138 MKQDSVQ 144
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 115 CVINKHHRNRCQYCRLQRCIAFGMKQD 141
>gi|426373748|ref|XP_004053750.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Gorilla
gorilla gorilla]
Length = 582
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 102 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 156
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 157 MKQDSVQ 163
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 134 CIINKHHRNRCQYCRLQRCIAFGMKQD 160
>gi|431905326|gb|ELK10371.1| Nuclear receptor subfamily 2 group C member 1 [Pteropus alecto]
Length = 605
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRTI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>gi|395820061|ref|XP_003783394.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Otolemur
garnettii]
Length = 604
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|332840362|ref|XP_003313976.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan troglodytes]
gi|397473628|ref|XP_003808308.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan paniscus]
Length = 484
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N AC+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYACR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 82 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 136
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 137 MRREAVQ 143
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 114 CPIDQHHRNQCQYCRLKKCLKVGMRREA 141
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLTYTCR-GNRDCPIDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQHLKNS 75
M ++ Q + S
Sbjct: 119 MRREAVQRGRTS 130
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRREA 123
>gi|57116108|gb|AAW33563.1| hepatic nuclear factor 4beta [Gallus gallus]
Length = 459
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R IV K H C+ + +C++DK RNQC+ CRLKKC
Sbjct: 69 TGKHYGASSCDGCK-GFFRRIVRKNHVYSCRFSR----QCVIDKDKRNQCRYCRLKKCFR 123
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 124 AGMKKEAVQNERDRI 138
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRLKKC GM K+
Sbjct: 102 QCVIDKDKRNQCRYCRLKKCFRAGMKKEA 130
>gi|47223192|emb|CAG11327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRL+KCL MG
Sbjct: 106 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSKED-CIINKHHRNRCQFCRLRKCLKMG 160
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 161 MKTESVQ 167
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL+KCL MGM +
Sbjct: 138 CIINKHHRNRCQFCRLRKCLKMGMKTE 164
>gi|344267618|ref|XP_003405663.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Loxodonta africana]
Length = 596
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 116 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 170
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 171 MKQDSVQ 177
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 148 CIINKHHRNRCQYCRLQRCIAFGMKQD 174
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 13 TCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
TC+ G + RN C+A C +D+ HRNQCQ CRLKKCL +GM ++ Q
Sbjct: 1075 TCE-GCKSFFKRSVRRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVGMRREAVQ 1130
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 1101 CPIDQHHRNQCQYCRLKKCLKVGMRREA 1128
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R I + C C+ G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 117 RHYGVVSCEGCKGFFKRSI----RKQLCYTCR-GSKDCQVTKHHRNRCQFCRLQKCLAMG 171
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 172 MKAESVQ 178
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM +
Sbjct: 149 CQVTKHHRNRCQFCRLQKCLAMGMKAE 175
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLTYTCR-GNRDCPIDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQHLKNS 75
M ++ Q + S
Sbjct: 119 MRREAVQRGRTS 130
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRREA 123
>gi|21955144|ref|NP_665723.1| nuclear receptor subfamily 2 group C member 1 [Rattus norvegicus]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|16905400|gb|AAL31316.1|L26398_1 orphan receptor [Rattus norvegicus]
gi|38197570|gb|AAH61822.1| Nr2c1 protein [Rattus norvegicus]
gi|149067156|gb|EDM16889.1| pregnancy specific beta-1-glycoprotein 4, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CIINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|387017404|gb|AFJ50820.1| Nuclear receptor subfamily 2 group C member 1-A-like [Crotalus
adamanteus]
Length = 640
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ GT C+++K HRN+CQ CRL++C+ G
Sbjct: 159 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GTRDCVINKHHRNRCQYCRLQRCIAFG 213
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 214 MKQDSVQ 220
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 191 CVINKHHRNRCQYCRLQRCIAFGMKQD 217
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN +C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFSCEGCKSFFKRSI----RRNLNYSCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|355564580|gb|EHH21080.1| Orphan nuclear receptor TR2 [Macaca mulatta]
Length = 558
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|242012996|ref|XP_002427209.1| Orphan nuclear receptor TR4, putative [Pediculus humanus corporis]
gi|212511501|gb|EEB14471.1| Orphan nuclear receptor TR4, putative [Pediculus humanus corporis]
Length = 565
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ GT C V K HRN+CQ CRL+KCL G
Sbjct: 99 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GTKNCEVTKHHRNRCQYCRLQKCLEKG 153
Query: 64 MNKDDAQH 71
M D QH
Sbjct: 154 MRSDSVQH 161
Score = 41.2 bits (95), Expect = 0.086, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL GM D
Sbjct: 131 CEVTKHHRNRCQYCRLQKCLEKGMRSD 157
>gi|149742912|ref|XP_001493970.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Equus caballus]
Length = 605
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN +C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSI----RRNLSYSCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|402887264|ref|XP_003907017.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 1 [Papio anubis]
gi|380816090|gb|AFE79919.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|383421223|gb|AFH33825.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|384949168|gb|AFI38189.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
Length = 604
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|301767748|ref|XP_002919289.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ailuropoda melanoleuca]
Length = 605
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MRQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMRQD 182
>gi|75066579|sp|Q95K90.1|NR2C1_MACFA RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|14388521|dbj|BAB60786.1| hypothetical protein [Macaca fascicularis]
gi|355762671|gb|EHH62044.1| Orphan nuclear receptor TR2 [Macaca fascicularis]
Length = 603
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|197098516|ref|NP_001127276.1| nuclear receptor subfamily 2 group C member 1 [Pongo abelii]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|55727212|emb|CAH90362.1| hypothetical protein [Pongo abelii]
Length = 601
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN +C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFSCEGCKSFFKRSI----RRNLNYSCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|402593284|gb|EJW87211.1| nuclear hormone receptor [Wuchereria bancrofti]
Length = 526
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q GT C V K HRN+CQ CRL+KCL MG
Sbjct: 53 RHYGAVSCEGCKGFFKRSI-----RKQIGYVCRGTKDCPVTKFHRNRCQYCRLRKCLTMG 107
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 108 MRSESVQ 114
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM +
Sbjct: 85 CPVTKFHRNRCQYCRLRKCLTMGMRSE 111
>gi|339887|gb|AAA36761.1| steroid receptor TR2-11 [Homo sapiens]
Length = 603
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|118150918|ref|NP_001071372.1| nuclear receptor subfamily 2 group C member 1 [Bos taurus]
gi|226733406|sp|A0JNE3.1|NR2C1_BOVIN RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|117306695|gb|AAI26644.1| Nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGEVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|410965258|ref|XP_003989167.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Felis
catus]
Length = 605
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MRQDSVQ 185
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMRQD 182
>gi|281340400|gb|EFB15984.1| hypothetical protein PANDA_007909 [Ailuropoda melanoleuca]
Length = 587
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 106 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 160
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 161 MRQDSVQ 167
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 138 CIINKHHRNRCQYCRLQRCIAFGMRQD 164
>gi|189491739|ref|NP_003288.2| nuclear receptor subfamily 2 group C member 1 isoform a [Homo
sapiens]
gi|226693548|sp|P13056.2|NR2C1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|119617925|gb|EAW97519.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_c
[Homo sapiens]
gi|307686061|dbj|BAJ20961.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146193|gb|AFF59487.1| testicular nuclear receptor 2 variant 1 [Homo sapiens]
Length = 603
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|73978201|ref|XP_854792.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Canis
lupus familiaris]
Length = 605
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MRQDSVQ 185
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMRQD 182
>gi|332840364|ref|XP_003313977.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 3
[Pan troglodytes]
Length = 468
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N AC+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYACR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 68 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 122
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 123 MRKEAVQ 129
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 100 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 127
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRTI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>gi|332221160|ref|XP_003259729.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Nomascus
leucogenys]
Length = 604
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|158256074|dbj|BAF84008.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSV----RRNLTYTCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSV----RRNLTYTCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 212 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 266
Query: 64 M 64
M
Sbjct: 267 M 267
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 244 CIINKHHRNRCQFCRLKKCLEMGM 267
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>gi|390979831|gb|AFM30921.1| KNIRPS1 [Parhyale hawaiensis]
Length = 397
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 29 NQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
+Q C+ G G+C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 45 SQIHECKNG-GQCVINKQNRTSCKACRLRKCLFVGMSKSGSRYGRRSNWFKIHC 97
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 55 QCVINKQNRTSCKACRLRKCLFVGMSKSG 83
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G G+C+VD + RNQCQACR KCL
Sbjct: 35 KHYGVPSCDGCRGFFKRSI----RRNLEYVCKEG-GKCVVDVSRRNQCQACRFAKCLQAN 89
Query: 64 MNKDDAQH 71
M ++ H
Sbjct: 90 MRREGKLH 97
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
+C+VD + RNQCQACR KCL M ++GK
Sbjct: 66 KCVVDVSRRNQCQACRFAKCLQANMRREGK 95
>gi|16905398|gb|AAL31315.1|L26957_1 orphan receptor [Mus musculus]
gi|1049076|gb|AAC29502.1| TR2 [Mus musculus]
Length = 590
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|74147214|dbj|BAE27509.1| unnamed protein product [Mus musculus]
Length = 590
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|312380833|gb|EFR26722.1| hypothetical protein AND_06978 [Anopheles darlingi]
Length = 832
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL G
Sbjct: 107 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSMNCEVTKHHRNRCQYCRLQKCLACG 161
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 162 MRSDSVQHERKPIV 175
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 137 MNCEVTKHHRNRCQYCRLQKCLACGMRSD 165
>gi|171846245|ref|NP_035759.3| nuclear receptor subfamily 2 group C member 1 [Mus musculus]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2; Short=mTR2
gi|63101502|gb|AAH94580.1| Nr2c1 protein [Mus musculus]
gi|74143559|dbj|BAE28842.1| unnamed protein product [Mus musculus]
gi|111598870|gb|AAH90662.1| Nr2c1 protein [Mus musculus]
Length = 590
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]
Length = 590
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|296212600|ref|XP_002752912.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Callithrix jacchus]
Length = 604
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ C+++K HRN+CQ CRL+KCL MG
Sbjct: 156 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSKQD-CVINKHHRNRCQFCRLRKCLKMG 210
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 211 MKTESVQ 217
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL+KCL MGM +
Sbjct: 188 CVINKHHRNRCQFCRLRKCLKMGMKTE 214
>gi|194749757|ref|XP_001957303.1| GF24121 [Drosophila ananassae]
gi|190624585|gb|EDV40109.1| GF24121 [Drosophila ananassae]
Length = 446
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2
group F member 6, partial [Ovis aries]
Length = 382
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 30 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 84
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 85 MRKEAVQ 91
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 62 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 89
>gi|358342829|dbj|GAA58146.1| nuclear receptor ROR-alpha [Clonorchis sinensis]
Length = 878
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 27 HRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
HRNQ AC A G C V++A RN+CQ CR KCL GM+KD
Sbjct: 478 HRNQTYAC-ARNGSCEVNRALRNKCQHCRFLKCLASGMSKD 517
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C V++A RN+CQ CR KCL GM+KD
Sbjct: 491 CEVNRALRNKCQHCRFLKCLASGMSKDA 518
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ C+++K HRN+CQ CRL+KCL MG
Sbjct: 155 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSKQD-CVINKHHRNRCQFCRLRKCLKMG 209
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 210 MKTESVQ 216
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL+KCL MGM +
Sbjct: 187 CVINKHHRNRCQFCRLRKCLKMGMKTE 213
>gi|149036769|gb|EDL91387.1| rCG56527, isoform CRA_b [Rattus norvegicus]
Length = 607
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 160 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 214
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 215 MKMESVQ 221
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 192 CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 70 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 124
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 125 MRKEAVQ 131
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 102 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 129
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 73 KHYGQFTCEGCKSFFKRSV----RRNLTYTCR-GNRDCPIDQHHRNQCQYCRLKKCLKVG 127
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 128 MRREAVQ 134
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 105 CPIDQHHRNQCQYCRLKKCLKVGMRREA 132
>gi|170588789|ref|XP_001899156.1| Nuclear hormone receptor family member nhr-41 [Brugia malayi]
gi|158593369|gb|EDP31964.1| Nuclear hormone receptor family member nhr-41, putative [Brugia
malayi]
Length = 526
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q GT C V K HRN+CQ CRL+KCL MG
Sbjct: 53 RHYGAVSCEGCKGFFKRSI-----RKQIGYVCRGTKDCPVTKFHRNRCQYCRLRKCLTMG 107
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 108 MRSESVQ 114
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM +
Sbjct: 85 CPVTKFHRNRCQYCRLRKCLTMGMRSE 111
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 31 CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
C+A A C VDK HRNQC+ACRL+KCL GMNK+ ++
Sbjct: 70 CKARGAAANGCPVDKTHRNQCRACRLRKCLEAGMNKEAERY 110
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
C VDK HRNQC+ACRL+KCL GMNK+ +
Sbjct: 80 CPVDKTHRNQCRACRLRKCLEAGMNKEAE 108
>gi|339238869|ref|XP_003380989.1| zinc finger protein [Trichinella spiralis]
gi|316976049|gb|EFV59394.1| zinc finger protein [Trichinella spiralis]
Length = 562
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C++ C+VD A RNQCQACRLKKCL +
Sbjct: 124 KHYGVPSCDGCRGFFKRSI----RRNLTYQCKSNDD-CVVDVARRNQCQACRLKKCLQVK 178
Query: 64 MNKDDAQH 71
MN+ Q+
Sbjct: 179 MNRHAVQN 186
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNK 115
C+VD A RNQCQACRLKKCL + MN+
Sbjct: 156 CVVDVARRNQCQACRLKKCLQVKMNR 181
>gi|444720729|gb|ELW61505.1| Nuclear receptor subfamily 2 group C member 1 [Tupaia chinensis]
Length = 606
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|71982053|ref|NP_499961.2| Protein NHR-76 [Caenorhabditis elegans]
gi|351049613|emb|CCD63287.1| Protein NHR-76 [Caenorhabditis elegans]
Length = 480
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G C A R +V + R C+ G C +D+ HR+ C+ACR +C++MGM
Sbjct: 90 HFGCIACAACSAFFRRTVV-LSRRYYCRRDPVGNSLCPLDRRHRSNCRACRYVRCIDMGM 148
Query: 65 NKDDAQHLKNSL 76
N Q+L++S+
Sbjct: 149 NPSSVQNLRDSI 160
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C +D+ HR+ C+ACR +C++MGMN
Sbjct: 125 CPLDRRHRSNCRACRYVRCIDMGMN 149
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 27 HRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
+R+ C+A ++ C +D+ HRNQCQ CRLKKC +GM K+ Q
Sbjct: 633 NRDLCKAHRSNRD-CQIDQHHRNQCQYCRLKKCFRVGMRKEAVQ 675
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 646 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 673
>gi|71725341|ref|NP_001025174.1| hepatocyte nuclear factor 4-alpha isoform e [Homo sapiens]
gi|50980769|gb|AAT91237.1| hepatocyte nuclear factor 4 alpha, transcript variant 7 [Homo
sapiens]
Length = 442
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>gi|312076288|ref|XP_003140794.1| nuclear hormone receptor family member nhr-41 [Loa loa]
gi|307764038|gb|EFO23272.1| nuclear hormone receptor family member nhr-41 [Loa loa]
Length = 525
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q GT C V K HRN+CQ CRL+KCL MG
Sbjct: 53 RHYGAVSCEGCKGFFKRSI-----RKQIGYVCRGTKDCPVTKFHRNRCQYCRLRKCLTMG 107
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 108 MRSESVQ 114
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM +
Sbjct: 85 CPVTKFHRNRCQYCRLRKCLTMGMRSE 111
>gi|291389741|ref|XP_002711252.1| PREDICTED: nuclear receptor subfamily 2, group C, member 1
[Oryctolagus cuniculus]
Length = 605
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 71 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 125
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 126 MRKEAVQ 132
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 103 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 130
>gi|307181122|gb|EFN68856.1| MAP kinase-activated protein kinase 2 [Camponotus floridanus]
Length = 962
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 37 GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNL 85
G+ C V K HRN+CQ CRL+KCL MGM D QH + +L E A +
Sbjct: 190 GSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDSVQHERKPVLGESAAAKV 238
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 194 CEVTKHHRNRCQYCRLQKCLAMGMRSDS 221
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLTYSCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 141 MRREAVQ 147
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 44 DKAHRNQCQACRLKKCLNMGMNKDDAQH------------LKNSLLYEFACTNLVELRCI 91
DK +N Q+ + +C+ G +K +H K S+ + C
Sbjct: 61 DKGSQNSGQSQQHIECVVCG-DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCP 119
Query: 92 VDKAHRNQCQACRLKKCLNMGMNKDG 117
+D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREA 145
>gi|170031565|ref|XP_001843655.1| Nuclear hormone receptor [Culex quinquefasciatus]
gi|167870483|gb|EDS33866.1| Nuclear hormone receptor [Culex quinquefasciatus]
Length = 667
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL G
Sbjct: 62 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSMNCEVTKHHRNRCQYCRLQKCLACG 116
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 117 MRSDSVQHERKPII 130
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 92 MNCEVTKHHRNRCQYCRLQKCLACGMRSD 120
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 85 KHYGQFTCEGCKSFFKRSV----RRNLTYSCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 139
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 140 MRREAVQ 146
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 44 DKAHRNQCQACRLKKCLNMGMNKDDAQH------------LKNSLLYEFACTNLVELRCI 91
DK +N Q+ + +C+ G +K +H K S+ + C
Sbjct: 60 DKGSQNSGQSQQHIECVVCG-DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCP 118
Query: 92 VDKAHRNQCQACRLKKCLNMGMNKDG 117
+D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 119 IDQHHRNQCQYCRLKKCLKVGMRREA 144
>gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 516
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 110 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 164
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 165 AGMKKEAVQNERDRI 179
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 143 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 171
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 64 KHYGVFTCEGCKSFFKRTI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 118
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 119 MRKEAVQ 125
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 96 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 123
>gi|216409722|dbj|BAH02298.1| nuclear receptor subfamily 2, group C isoform [Homo sapiens]
Length = 434
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|994838|gb|AAA75575.1| mineralocorticoid receptor, partial [Xenopus laevis]
Length = 394
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + K R C AG CI+DK R C ACRL+KCL GM
Sbjct: 22 HYGVVTCGSCKVFFKRAVEGKCSRQHSYLC-AGRNDCIIDKIRRKNCPACRLQKCLQAGM 80
Query: 65 N 65
N
Sbjct: 81 N 81
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 57 CIIDKIRRKNCPACRLQKCLQAGMN 81
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSV----RRNLSYTCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLTYTCR-GNRDCPIDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQHLKNS 75
M ++ Q + S
Sbjct: 119 MRREAVQRGRTS 130
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRREA 123
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRTI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|20126654|dbj|BAB88907.1| seven-up beta [Bombyx mori]
Length = 161
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 24/126 (19%)
Query: 9 TDHPTCQAGTERCIVDKAHRNQCQACQAGT---GRCIVDKAHRNQCQACRLKKCLNMGMN 65
DHP + G + H A QA + G DK +C C +
Sbjct: 40 PDHPPLELGFRGSWREDEHLPSTPASQAASTQSGSSATDKGQNVECVVC---------GD 90
Query: 66 KDDAQH------------LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGM 113
K +H K S+ + C +D+ HRNQCQ CRL+KCL MGM
Sbjct: 91 KSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRKCLKMGM 150
Query: 114 NKDGKS 119
++G+S
Sbjct: 151 RREGES 156
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 48 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 102
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 103 MRKEAVQ 109
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 80 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 107
>gi|149637974|ref|XP_001510105.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ornithorhynchus anatinus]
Length = 561
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 79 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 133
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 134 MKQDSVQ 140
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 111 CIINKHHRNRCQYCRLQRCIAFGMKQD 137
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|427794421|gb|JAA62662.1| Putative nuclear receptor hormone receptor in 78-like protein,
partial [Rhipicephalus pulchellus]
Length = 463
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q G+ C V K HRN+CQ CRL KCL+MG
Sbjct: 37 RHYGAVSCEGCKGFFKRSI-----RKQLAYTCRGSRDCQVTKHHRNRCQYCRLHKCLSMG 91
Query: 64 MNKDDAQ 70
M D Q
Sbjct: 92 MRADSVQ 98
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
K S+ + A T C V K HRN+CQ CRL KCL+MGM D
Sbjct: 51 FKRSIRKQLAYTCRGSRDCQVTKHHRNRCQYCRLHKCLSMGMRAD 95
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 233 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 287
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 288 MRREAVQ 294
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 265 CPIDQHHRNQCQYCRLKKCLKVGMRREA 292
>gi|308492592|ref|XP_003108486.1| CRE-NHR-76 protein [Caenorhabditis remanei]
gi|308248226|gb|EFO92178.1| CRE-NHR-76 protein [Caenorhabditis remanei]
Length = 506
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G C A R +V + R C+ G C +D+ HR+ C+ACR +C+ MGM
Sbjct: 115 HFGCIACAACSAFFRRTVV-LSRRYYCRRDPIGNSLCPLDRRHRSNCRACRYVRCIEMGM 173
Query: 65 NKDDAQHLKNSL 76
N Q+L++S+
Sbjct: 174 NPSSVQNLRDSI 185
Score = 38.5 bits (88), Expect = 0.54, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C +D+ HR+ C+ACR +C+ MGMN
Sbjct: 150 CPLDRRHRSNCRACRYVRCIEMGMN 174
>gi|338721157|ref|XP_003364317.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Equus
caballus]
Length = 497
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 39 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 93
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 94 MRKEAVQ 100
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 71 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 98
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 83 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 137
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 138 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 168
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 115 CPIDQHHRNQCQYCRLKKCLKVGMRREA 142
>gi|71725339|ref|NP_787110.2| hepatocyte nuclear factor 4-alpha isoform d [Homo sapiens]
gi|50980771|gb|AAT91238.1| hepatocyte nuclear factor 4 alpha, transcript variant 8 [Homo
sapiens]
gi|119596327|gb|EAW75921.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Homo sapiens]
gi|325495547|gb|ADZ17379.1| hepatocyte nuclear factor 4 4 alpha variant 4 [Homo sapiens]
Length = 452
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 80 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 134
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 135 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 165
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 112 CPIDQHHRNQCQYCRLKKCLKVGMRREA 139
>gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 alpha (HNF4alpha4) [Homo sapiens]
gi|1588510|prf||2208436A hepatocyte nuclear factor 4:ISOTYPE=alpha
Length = 504
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 98 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 152
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 153 AGMKKEAVQNERDRI 167
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 131 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 159
>gi|390462622|ref|XP_002747621.2| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha
isoform 2 [Callithrix jacchus]
Length = 517
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 111 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 165
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 166 AGMKKEAVQNERDRI 180
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 144 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 172
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4-alpha isoform a [Homo sapiens]
gi|325495531|gb|ADZ17371.1| hepatocyte nuclear factor 4 4 alpha variant 1 [Homo sapiens]
Length = 464
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|397511215|ref|XP_003825974.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Pan
paniscus]
Length = 464
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [Homo sapiens]
Length = 455
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL MG
Sbjct: 59 KHYGQFTCEGCKSFFKRSV----RRNLSYTCR-GNRNCPIDQHHRNQCQDCRLKKCLKMG 113
Query: 64 MNKD 67
M ++
Sbjct: 114 MRRE 117
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 91 CPIDQHHRNQCQDCRLKKCLKMGMRRE 117
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 80 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 134
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 135 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 165
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 112 CPIDQHHRNQCQYCRLKKCLKVGMRREA 139
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C+A + C +D+ HRNQCQ CRLKKCL +G
Sbjct: 38 KHYGVFTCEGCKSFFKRSV----RRNLTYTCRA-SRDCPIDQHHRNQCQYCRLKKCLKVG 92
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 93 MRREAVQ 99
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 70 CPIDQHHRNQCQYCRLKKCLKVGMRREA 97
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 141 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 171
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 100 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 145
>gi|324505640|gb|ADY42421.1| Nuclear hormone receptor family member nhr-41 [Ascaris suum]
Length = 673
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q G+ C V K HRN+CQ CRL+KCL MG
Sbjct: 201 RHYGAVSCEGCKGFFKRSI-----RKQIGYVCRGSKDCPVTKFHRNRCQYCRLRKCLTMG 255
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 256 MRSESVQ 262
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM +
Sbjct: 233 CPVTKFHRNRCQYCRLRKCLTMGMRSE 259
>gi|432866384|ref|XP_004070824.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Oryzias latipes]
Length = 609
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ C+++K HRN+CQ CRL+KCL MG
Sbjct: 156 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSKQD-CVINKHHRNRCQFCRLRKCLKMG 210
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 211 MKTESVQ 217
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL+KCL MGM +
Sbjct: 188 CVINKHHRNRCQFCRLRKCLKMGMKTE 214
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 64 KHYGVFTCEGCKSFFKRSV----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 118
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 119 MRKEAVQ 125
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 96 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 123
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 39 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 93
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 94 MRKEAVQ 100
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 71 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 98
>gi|195495815|ref|XP_002095428.1| GE22389 [Drosophila yakuba]
gi|194181529|gb|EDW95140.1| GE22389 [Drosophila yakuba]
Length = 433
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|194875090|ref|XP_001973525.1| GG13292 [Drosophila erecta]
gi|190655308|gb|EDV52551.1| GG13292 [Drosophila erecta]
Length = 433
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R I R+ C+ G+ C VD HRNQCQ CRLKKC MG
Sbjct: 87 KHYGQFSCEGCKSFFKRSI----RRSLSYTCR-GSKNCPVDINHRNQCQYCRLKKCEKMG 141
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 142 MRKEAVQ 148
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD HRNQCQ CRLKKC MGM K+
Sbjct: 119 CPVDINHRNQCQYCRLKKCEKMGMRKEA 146
>gi|385298694|ref|NP_001245284.1| hepatocyte nuclear factor 4-alpha isoform g [Homo sapiens]
gi|119596329|gb|EAW75923.1| hepatocyte nuclear factor 4, alpha, isoform CRA_c [Homo sapiens]
Length = 467
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 61 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 115
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 116 AGMKKEAVQNERDRI 130
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 94 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 122
>gi|403290713|ref|XP_003936452.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|397511213|ref|XP_003825973.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Pan
paniscus]
Length = 474
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [Homo sapiens]
Length = 465
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|297259762|ref|XP_001110097.2| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Macaca
mulatta]
Length = 462
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 56 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 110
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 111 AGMKKEAVQNERDRI 125
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 89 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 117
>gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [Homo sapiens]
Length = 465
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4-alpha isoform b [Homo sapiens]
gi|148886624|sp|P41235.3|HNF4A_HUMAN RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|119596331|gb|EAW75925.1| hepatocyte nuclear factor 4, alpha, isoform CRA_e [Homo sapiens]
gi|147883854|gb|ABQ52204.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|208966450|dbj|BAG73239.1| hepatocyte nuclear factor 4, alpha [synthetic construct]
gi|325495549|gb|ADZ17380.1| hepatocyte nuclear factor 4 4 alpha variant 2 [Homo sapiens]
Length = 474
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|226214|prf||1501349A hormone receptor-like protein
Length = 429
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 42 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|340719405|ref|XP_003398144.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 283
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 24/43 (55%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
R C AGTG C VDKA RN C CRL KC +GMN Q
Sbjct: 41 RGALFTCIAGTGACFVDKARRNWCPYCRLNKCFTVGMNTAAVQ 83
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C VDKA RN C CRL KC +GMN
Sbjct: 54 CFVDKARRNWCPYCRLNKCFTVGMN 78
>gi|324510049|gb|ADY44207.1| Nuclear hormone receptor family member nhr-40 [Ascaris suum]
Length = 456
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K QCQ + CIVDK+ R C++CRLKKC MGMN + QH +
Sbjct: 114 CKTFFRRALVNK-QAFQCQF----SDDCIVDKSVRCGCRSCRLKKCFQMGMNPNAIQHDR 168
Query: 74 NSLLY 78
+ + Y
Sbjct: 169 DKIRY 173
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDK+ R C++CRLKKC MGMN +
Sbjct: 136 CIVDKSVRCGCRSCRLKKCFQMGMNPNA 163
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 141 MRREAVQ 147
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 44 DKAHRNQCQACRLKKCLNMGMNKDDAQH------------LKNSLLYEFACTNLVELRCI 91
DK +N Q+ + +C+ G +K +H K S+ T C
Sbjct: 61 DKGSQNSGQSQQHIECVVCG-DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCP 119
Query: 92 VDKAHRNQCQACRLKKCLNMGMNKDG 117
+D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREA 145
>gi|17737693|ref|NP_524187.1| knirps [Drosophila melanogaster]
gi|125509|sp|P10734.1|KNIR_DROME RecName: Full=Zygotic gap protein knirps; AltName: Full=Nuclear
receptor subfamily 0 group A member 1
gi|8154|emb|CAA31709.1| knirps protein [Drosophila melanogaster]
gi|10726915|gb|AAF51629.2| knirps [Drosophila melanogaster]
gi|21429960|gb|AAM50658.1| GH19318p [Drosophila melanogaster]
gi|220942298|gb|ACL83692.1| kni-PA [synthetic construct]
gi|220952770|gb|ACL88928.1| kni-PA [synthetic construct]
Length = 429
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 42 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 91 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 145
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 146 MRREAVQ 152
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 123 CPIDQHHRNQCQYCRLKKCLKVGMRREA 150
>gi|397511217|ref|XP_003825975.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 3 [Pan
paniscus]
Length = 467
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 61 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 115
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 116 AGMKKEAVQNERDRI 130
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 94 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 122
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKNFFKRSI----RRNISYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 85 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 139
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 140 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 170
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 99 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 144
>gi|341892635|gb|EGT48570.1| CBN-NHR-236 protein [Caenorhabditis brenneri]
Length = 284
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R I RN C+ G G C+VD RNQCQACR +KCL +
Sbjct: 22 RHYGVLSCDGCRGFFKRSI----RRNLRYTCKEGQG-CVVDVVRRNQCQACRFQKCLAVS 76
Query: 64 MNKDDAQH 71
MN+ QH
Sbjct: 77 MNRHAVQH 84
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNK 115
C+VD RNQCQACR +KCL + MN+
Sbjct: 54 CVVDVVRRNQCQACRFQKCLAVSMNR 79
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 85 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 139
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 140 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 170
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 99 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 144
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 141 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 171
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 100 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 145
>gi|216409714|dbj|BAH02294.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 465
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNGRDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 96 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 150
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 151 MRREAVQ 157
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 128 CPIDQHHRNQCQYCRLKKCLKVGMRREA 155
>gi|1173533|gb|AAC53253.1| orphan receptor [Mus musculus]
gi|1537010|gb|AAC52787.1| orphan receptor [Mus musculus]
Length = 590
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVMNKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVMNKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRTI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 85 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 139
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 140 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 170
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 99 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 144
>gi|403290711|ref|XP_003936451.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 474
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|338721159|ref|XP_003364318.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Equus
caballus]
Length = 485
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 95 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 149
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 150 MRREAVQ 156
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 127 CPIDQHHRNQCQYCRLKKCLKVGMRREA 154
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 96 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 150
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 151 MRREAVQ 157
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 128 CPIDQHHRNQCQYCRLKKCLKVGMRREA 155
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 39 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 93
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 94 MRKEAVQ 100
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 71 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 98
>gi|355707882|gb|AES03094.1| nuclear receptor subfamily 2, group C, member 1 [Mustela putorius
furo]
Length = 451
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MRQDSVQ 185
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMRQD 182
>gi|297263280|ref|XP_002798778.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
isoform 2 [Macaca mulatta]
Length = 483
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 64 KHYGVFTCEGCKSFFKRSV----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 118
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 119 MRKEAVQ 125
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 96 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 123
>gi|402882458|ref|XP_003904758.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha, partial [Papio anubis]
Length = 425
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 29 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 83
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 84 AGMKKEAVQNERDRI 98
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 62 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 90
>gi|281345563|gb|EFB21147.1| hypothetical protein PANDA_005626 [Ailuropoda melanoleuca]
Length = 489
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 83 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 137
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 138 AGMKKEAVQNERDRI 152
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 116 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 144
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSV----RRNLSYTCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|195348331|ref|XP_002040702.1| kni [Drosophila sechellia]
gi|194122212|gb|EDW44255.1| kni [Drosophila sechellia]
Length = 431
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 50 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 93
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 46 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 79
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLSYTCR-GNRDCPIDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 119 MRREAVQ 125
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRREA 123
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|355563116|gb|EHH19678.1| hypothetical protein EGK_02387 [Macaca mulatta]
Length = 527
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 131 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 185
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 186 AGMKKEAVQNERDRI 200
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 164 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 192
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|158296726|ref|XP_555061.3| AGAP008382-PA [Anopheles gambiae str. PEST]
gi|157014850|gb|EAL39578.3| AGAP008382-PA [Anopheles gambiae str. PEST]
Length = 641
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL G
Sbjct: 65 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSMNCEVTKHHRNRCQYCRLQKCLACG 119
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 120 MRSDSVQHERKPII 133
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 95 MNCEVTKHHRNRCQYCRLQKCLACGMRSD 123
>gi|149067157|gb|EDM16890.1| pregnancy specific beta-1-glycoprotein 4, isoform CRA_b [Rattus
norvegicus]
Length = 405
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CIINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|157124285|ref|XP_001660403.1| Nuclear hormone receptor (HR78) [Aedes aegypti]
gi|108882838|gb|EAT47063.1| AAEL001796-PA [Aedes aegypti]
Length = 630
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL G
Sbjct: 60 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSMNCEVTKHHRNRCQYCRLQKCLACG 114
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 115 MRSDSVQHERKPII 128
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 90 MNCEVTKHHRNRCQYCRLQKCLACGMRSD 118
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 93 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 147
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 148 MRREAVQ 154
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 125 CPIDQHHRNQCQYCRLKKCLKVGMRREA 152
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 60 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCIVDKDKRNQCRYCRLKKCFR 114
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 115 AGMKKEAVQNERDRI 129
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 93 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 121
>gi|194749753|ref|XP_001957301.1| GF24122 [Drosophila ananassae]
gi|190624583|gb|EDV40107.1| GF24122 [Drosophila ananassae]
Length = 674
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 51 CKNNGE--CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 97 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 151
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 152 MRREAVQ 158
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 129 CPIDQHHRNQCQYCRLKKCLKVGMRREA 156
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 95 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 149
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 150 MRREAVQ 156
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 127 CPIDQHHRNQCQYCRLKKCLKVGMRREA 154
>gi|24668103|ref|NP_730636.1| Hormone-receptor-like in 78, isoform B [Drosophila melanogaster]
gi|24668107|ref|NP_730637.1| Hormone-receptor-like in 78, isoform C [Drosophila melanogaster]
gi|45553219|ref|NP_996137.1| Hormone-receptor-like in 78, isoform D [Drosophila melanogaster]
gi|320546143|ref|NP_001189151.1| Hormone-receptor-like in 78, isoform E [Drosophila melanogaster]
gi|320546145|ref|NP_001189152.1| Hormone-receptor-like in 78, isoform F [Drosophila melanogaster]
gi|73620966|sp|Q24142.2|HR78_DROME RecName: Full=Nuclear hormone receptor HR78; Short=dHR78; AltName:
Full=Nuclear receptor XR78E/F; AltName: Full=Nuclear
receptor subfamily 2 group D member 1
gi|23094237|gb|AAN12168.1| Hormone-receptor-like in 78, isoform B [Drosophila melanogaster]
gi|23094238|gb|AAN12169.1| Hormone-receptor-like in 78, isoform C [Drosophila melanogaster]
gi|45446065|gb|AAS65089.1| Hormone-receptor-like in 78, isoform D [Drosophila melanogaster]
gi|318069264|gb|ADV37587.1| Hormone-receptor-like in 78, isoform E [Drosophila melanogaster]
gi|318069265|gb|ADV37588.1| Hormone-receptor-like in 78, isoform F [Drosophila melanogaster]
Length = 601
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 62 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 116
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 117 MRSDSVQHERKPIV 130
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 92 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
>gi|317183315|gb|ADV15461.1| AT13850p [Drosophila melanogaster]
Length = 605
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 66 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 120
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 121 MRSDSVQHERKPIV 134
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 96 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 124
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 147 MRREAVQ 153
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRREA 151
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 91 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 145
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 146 MRREAVQ 152
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 123 CPIDQHHRNQCQYCRLKKCLKVGMRREA 150
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|355784472|gb|EHH65323.1| hypothetical protein EGM_02066 [Macaca fascicularis]
Length = 527
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 131 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 185
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 186 AGMKKEAVQNERDRI 200
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 164 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 192
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|1036839|gb|AAC46927.1| DHR78 [Drosophila melanogaster]
Length = 601
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 62 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 116
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 117 MRSDSVQHERKPIV 130
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 92 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 93 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 147
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 148 MRREAVQ 154
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 125 CPIDQHHRNQCQYCRLKKCLKVGMRREA 152
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|383505564|gb|AFH36361.1| FI19919p1 [Drosophila melanogaster]
Length = 605
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 66 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 120
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 121 MRSDSVQHERKPIV 134
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 96 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 124
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 147 MRREAVQ 153
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRREA 151
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 71 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 125
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 126 MRREAVQ 132
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 CPIDQHHRNQCQYCRLKKCLKVGMRREA 130
>gi|297263282|ref|XP_001107297.2| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
isoform 1 [Macaca mulatta]
Length = 468
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|403276111|ref|XP_003929757.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDA 69
M +D +
Sbjct: 179 MKQDSS 184
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 68 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 122
Query: 64 MNKDDAQHLKNSLLYEFACTNLV 86
M K+ + SL E++ +LV
Sbjct: 123 MRKEG----QASLAAEWSSHSLV 141
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKS 119
C +D+ HRNQCQ CRLKKC +GM K+G++
Sbjct: 100 CQIDQHHRNQCQYCRLKKCFRVGMRKEGQA 129
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|341894992|gb|EGT50927.1| hypothetical protein CAEBREN_16108 [Caenorhabditis brenneri]
Length = 491
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G C A R +V + R C+ G C +D+ HR+ C+ACR +C+ MGM
Sbjct: 94 HFGCIACAACSAFFRRTVV-LSRRYYCRRDPIGNSLCPLDRRHRSNCRACRYVRCIEMGM 152
Query: 65 NKDDAQHLKNSL 76
N Q+L++S+
Sbjct: 153 NPSSVQNLRDSI 164
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C +D+ HR+ C+ACR +C+ MGMN
Sbjct: 129 CPLDRRHRSNCRACRYVRCIEMGMN 153
>gi|25012937|gb|AAN71555.1| RH29074p, partial [Drosophila melanogaster]
Length = 738
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 184 TGKHYGASSFDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 238
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 239 AGMKKEAVQNERDRI 253
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 218 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 245
>gi|402593257|gb|EJW87184.1| hypothetical protein WUBG_01907, partial [Wuchereria bancrofti]
Length = 446
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 75 SLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
S L + C + +CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 45 STLNNYQCPR--QQKCIVDRVNRNRCQYCRLKKCLELGMSRDA 85
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 57 KCIVDRVNRNRCQYCRLKKCLELGMSRD 84
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 147 MRREAVQ 153
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRREA 151
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 84 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 138
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 139 MRREAVQ 145
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 116 CPIDQHHRNQCQYCRLKKCLKVGMRREA 143
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 144 MRREAVQ 150
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 121 CPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|73808084|ref|NP_001027458.1| nuclear receptor subfamily 2 group C member 1 isoform b [Homo
sapiens]
gi|339889|gb|AAA36762.1| steroid receptor TR2-9 [Homo sapiens]
gi|25304019|gb|AAH40141.1| Nuclear receptor subfamily 2, group C, member 1 [Homo sapiens]
gi|119617924|gb|EAW97518.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_b
[Homo sapiens]
gi|325463583|gb|ADZ15562.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146195|gb|AFF59488.1| testicular nuclear receptor 2 variant 2 [Homo sapiens]
Length = 467
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|321463821|gb|EFX74834.1| hypothetical protein DAPPUDRAFT_323993 [Daphnia pulex]
Length = 539
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q G C V K HRN+CQ CRL+KCL+MG
Sbjct: 38 RHYGAISCEGCKGFFKRSI-----RKQLGYTCRGGKDCEVTKHHRNRCQYCRLQKCLSMG 92
Query: 64 MNKDDAQ 70
M D Q
Sbjct: 93 MRSDSVQ 99
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL+MGM D
Sbjct: 70 CEVTKHHRNRCQYCRLQKCLSMGMRSD 96
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 11 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 65
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 66 MRREAVQ 72
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 43 CPIDQHHRNQCQYCRLKKCLKVGMRREA 70
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 459 CPIDQHHRNQCQYCRLKKCLKVGMRREA 486
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 459 CPIDQHHRNQCQYCRLKKCLKVGMRRE 485
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 97 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 151
Query: 64 MNKDDAQHLKNSLLY----EFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 152 MRREAVQRGRMPPTQPHHGQFALTNGDPLHC 182
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 129 CPIDQHHRNQCQYCRLKKCLKVGMRREA 156
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I +N C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 125 TGKHYGASSCDGCKGFFRRSI----RKNHVYTCRF-SRQCVVDKDKRNQCRYCRLKKCFR 179
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 180 AGMKKEAVQNERDRI 194
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 158 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 186
>gi|189233984|ref|XP_001813130.1| PREDICTED: similar to nuclear receptor [Tribolium castaneum]
gi|270015114|gb|EFA11562.1| hormone receptor in 78-like protein [Tribolium castaneum]
Length = 489
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL G
Sbjct: 41 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GSKNCEVTKHHRNRCQYCRLQKCLACG 95
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 96 MRSDSVQHERKPII 109
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL GM D
Sbjct: 73 CEVTKHHRNRCQYCRLQKCLACGMRSD 99
>gi|195378648|ref|XP_002048095.1| knirps [Drosophila virilis]
gi|194155253|gb|EDW70437.1| knirps [Drosophila virilis]
Length = 486
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 52 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G+ C+ +R + +N C+ G+ C +DK HRN+CQ CR KCL
Sbjct: 21 TGKHYGVVACEGCKGFFKRTV----RKNLIYTCR-GSNDCFIDKVHRNRCQKCRFVKCLT 75
Query: 62 MGMNKDDAQ 70
GM K+ Q
Sbjct: 76 AGMKKEAVQ 84
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +DK HRN+CQ CR KCL GM K+
Sbjct: 55 CFIDKVHRNRCQKCRFVKCLTAGMKKEA 82
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKDDAQH 71
M ++ Q
Sbjct: 147 MRREAIQQ 154
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRREA 151
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|354493671|ref|XP_003508963.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 3
[Cricetulus griseus]
Length = 439
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSI----RRNLNYTCRSNR-ECQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 96 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 150
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 151 MRREAVQ 157
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 128 CPIDQHHRNQCQYCRLKKCLKVGMRREA 155
>gi|341894691|gb|EGT50626.1| hypothetical protein CAEBREN_26321 [Caenorhabditis brenneri]
Length = 389
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R I R+ C+A T C +D HRNQCQ CRL KC+ MG
Sbjct: 57 KHYGQFSCEGCKSFFKRSI----RRSLSYTCRA-TKNCAIDVQHRNQCQYCRLTKCIRMG 111
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 112 MRKEAVQ 118
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D HRNQCQ CRL KC+ MGM K+
Sbjct: 71 FKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCIRMGMRKEA 116
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C VD+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPVDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 119 MRREAVQ 125
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C VD+ HRNQCQ CRLKKCL +GM ++
Sbjct: 78 FKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREA 123
>gi|341876349|gb|EGT32284.1| hypothetical protein CAEBREN_30462, partial [Caenorhabditis
brenneri]
Length = 322
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C A R +V + R C+ G C +D+ HR+ C+ACR +C+ MGMN Q+L+
Sbjct: 103 CSAFFRRTVV-LSRRYYCRRDPIGNSLCPLDRRHRSNCRACRYVRCIEMGMNPSSVQNLR 161
Query: 74 NSL 76
+S+
Sbjct: 162 DSI 164
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HR+ C+ACR +C+ MGMN
Sbjct: 129 CPLDRRHRSNCRACRYVRCIEMGMNPSS 156
>gi|148689627|gb|EDL21574.1| nuclear receptor subfamily 2, group C, member 1 [Mus musculus]
Length = 416
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|354493673|ref|XP_003508964.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 4
[Cricetulus griseus]
Length = 449
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 144 MRREAVQ 150
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 121 CPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 121 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 175
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 176 MRREAVQ 182
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 153 CPIDQHHRNQCQYCRLKKCLKVGMRREA 180
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 96 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 150
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 151 MRREAVQ 157
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 128 CPIDQHHRNQCQYCRLKKCLKVGMRREA 155
>gi|6016234|sp|P79926.1|HNF4B_XENLA RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta;
AltName: Full=Nuclear receptor subfamily 2 group A
member 3
gi|1771970|emb|CAA89991.1| hepatocyte nuclear factor 4 beta (HNF4 beta) [Xenopus laevis]
Length = 446
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N AC+ + +CIVDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSV----RKNHVYACRF-SRQCIVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCIVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCIVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCIVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCIVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I +N C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 69 TGKHYGASSCDGCKGFFRRSI----RKNHVYTCRF-SRQCIVDKDKRNQCRYCRLKKCFR 123
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 124 AGMKKEAVQNERDRI 138
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 102 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 130
>gi|291409662|ref|XP_002721104.1| PREDICTED: hepatocyte nuclear factor 4 alpha [Oryctolagus
cuniculus]
Length = 452
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|170593425|ref|XP_001901465.1| steroid hormone receptor [Brugia malayi]
gi|158591532|gb|EDP30145.1| steroid hormone receptor, putative [Brugia malayi]
Length = 447
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 75 SLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
S L + C + +CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 46 STLNNYQCPR--QQKCIVDRVNRNRCQYCRLKKCLELGMSRDA 86
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 58 KCIVDRVNRNRCQYCRLKKCLELGMSRD 85
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
RN +C+ G C +D+ HRNQCQ CRLKKCL MGM
Sbjct: 12 RNLTYSCR-GNRNCPIDQHHRNQCQFCRLKKCLKMGM 47
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C +D+ HRNQCQ CRLKKCL MGM
Sbjct: 24 CPIDQHHRNQCQFCRLKKCLKMGM 47
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|410928929|ref|XP_003977852.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Takifugu rubripes]
Length = 441
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCIVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|2500912|sp|Q24753.1|KNIR_DROVI RecName: Full=Zygotic gap protein knirps; AltName: Full=Nuclear
receptor subfamily 0 group A member 1
gi|537508|gb|AAA66190.1| DNA-binding protein [Drosophila virilis]
Length = 481
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|426246965|ref|XP_004017257.1| PREDICTED: mineralocorticoid receptor isoform 3 [Ovis aries]
Length = 990
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRN-QCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
H G+ +C+ +R + K R Q AG CI+DK R C ACRL+KCL G
Sbjct: 616 HYGVVTCGSCKVFFKRAVEGKCSRGWQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAG 675
Query: 64 MN 65
MN
Sbjct: 676 MN 677
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 653 CIIDKIRRKNCPACRLQKCLQAGMN 677
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|28574803|ref|NP_788552.1| knirps-like [Drosophila melanogaster]
gi|125519|sp|P13054.1|KNRL_DROME RecName: Full=Knirps-related protein; AltName: Full=Nuclear
receptor subfamily 0 group A member 2
gi|8156|emb|CAA32365.1| unnamed protein product [Drosophila melanogaster]
gi|18447289|gb|AAL68221.1| LD23140p [Drosophila melanogaster]
gi|23094177|gb|AAF51627.2| knirps-like [Drosophila melanogaster]
gi|220942344|gb|ACL83715.1| knrl-PA [synthetic construct]
gi|220960286|gb|ACL92679.1| knrl-PA [synthetic construct]
gi|226215|prf||1501350A knirps related gene
Length = 647
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 56 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 110
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 111 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 141
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 70 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 115
>gi|71990050|ref|NP_503454.2| Protein NHR-178 [Caenorhabditis elegans]
gi|351061734|emb|CCD69574.1| Protein NHR-178 [Caenorhabditis elegans]
Length = 421
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+T C A R IV R + C+ G +CIV+ R QC+ CR KC+ +GM
Sbjct: 35 HFGVTSCRACAAFFRRTIV--MSRTKKYRCRGGMNKCIVNTNDRYQCRLCRFNKCVTLGM 92
Query: 65 NKDDAQ 70
++ Q
Sbjct: 93 TSENVQ 98
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+CIV+ R QC+ CR KC+ +GM +
Sbjct: 68 KCIVNTNDRYQCRLCRFNKCVTLGMTSE 95
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|341877622|gb|EGT33557.1| hypothetical protein CAEBREN_10661 [Caenorhabditis brenneri]
Length = 259
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C +R + +N C AG RC+VDK RN C ACRL KC +
Sbjct: 21 RHYGVWACDGCSCFFKRSV----RKNIMYTCIAGNWRCVVDKGRRNWCPACRLAKCTKLK 76
Query: 64 MNKDDAQH 71
MN++ Q+
Sbjct: 77 MNREAVQN 84
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
RC+VDK RN C ACRL KC + MN++
Sbjct: 53 RCVVDKGRRNWCPACRLAKCTKLKMNREA 81
>gi|195440492|ref|XP_002068076.1| GK10545 [Drosophila willistoni]
gi|194164161|gb|EDW79062.1| GK10545 [Drosophila willistoni]
Length = 458
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|391348045|ref|XP_003748262.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Metaseiulus occidentalis]
Length = 534
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I R Q G C V K HRN+CQ CRL+KCL MG
Sbjct: 121 RHYGAISCEGCKGFFKRSI-----RKQLGYACRGDRNCEVTKHHRNRCQHCRLQKCLQMG 175
Query: 64 MNKDDAQ 70
M D Q
Sbjct: 176 MRADAVQ 182
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+AC + C V K HRN+CQ CRL+KCL MGM D
Sbjct: 145 YACRG--DRNCEVTKHHRNRCQHCRLQKCLQMGMRADA 180
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 56 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 110
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 111 MRREAVQ 117
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 88 CPIDQHHRNQCQYCRLKKCLKVGMRREA 115
>gi|194751435|ref|XP_001958032.1| GF10710 [Drosophila ananassae]
gi|190625314|gb|EDV40838.1| GF10710 [Drosophila ananassae]
Length = 612
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 67 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 121
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 122 MRSDSVQHERKPIV 135
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 97 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 125
>gi|118344390|ref|NP_001072021.1| nuclear receptor [Ciona intestinalis]
gi|70571079|dbj|BAE06675.1| nuclear receptor [Ciona intestinalis]
Length = 802
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
G CI+D+++RN+CQ CRL+KCL GM+KD
Sbjct: 205 GNCIIDRSNRNRCQHCRLQKCLRAGMSKD 233
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 78 YEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
Y ++C CI+D+++RN+CQ CRL+KCL GM+KD
Sbjct: 197 YAYSCPR--HGNCIIDRSNRNRCQHCRLQKCLRAGMSKDA 234
>gi|195591928|ref|XP_002085688.1| kni [Drosophila simulans]
gi|194197697|gb|EDX11273.1| kni [Drosophila simulans]
Length = 378
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 42 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|951325|gb|AAC46924.1| nuclear receptor XR78E/F [Drosophila melanogaster]
Length = 601
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 62 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 116
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 117 MRSDSVQHERKPIV 130
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 92 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
>gi|195348321|ref|XP_002040697.1| GM22199 [Drosophila sechellia]
gi|194122207|gb|EDW44250.1| GM22199 [Drosophila sechellia]
Length = 643
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|198463937|ref|XP_001353002.2| GA18381 [Drosophila pseudoobscura pseudoobscura]
gi|198151472|gb|EAL30503.2| GA18381 [Drosophila pseudoobscura pseudoobscura]
Length = 493
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+C++DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCVIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK +R C+ACRL+KC N+GM+K G
Sbjct: 52 KCVIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|313246784|emb|CBY35651.1| unnamed protein product [Oikopleura dioica]
Length = 160
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C +++ +C +DKAHRNQC+ACRL+ CL + MN+D
Sbjct: 48 SYVCKGIIQGQCPIDKAHRNQCRACRLEHCLKVRMNRD 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
G+C +DKAHRNQC+ACRL+ CL + MN+D Q
Sbjct: 57 GQCPIDKAHRNQCRACRLEHCLKVRMNRDAVQ 88
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 144 MRREAVQ 150
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 55 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 109
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 110 MRREAVQ 116
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 87 CPIDQHHRNQCQYCRLKKCLKVGMRREA 114
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+ C+++K +RN+CQ CRL++C+++G
Sbjct: 162 RHYGAVTCEGCKGFFKRSI----RKNLVYTCR-GSKDCVINKHYRNRCQYCRLQRCMSLG 216
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 217 MKQDSVQ 223
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K +RN+CQ CRL++C+++GM +D
Sbjct: 194 CVINKHYRNRCQYCRLQRCMSLGMKQD 220
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 45 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 99
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 100 MRREAVQ 106
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 77 CPIDQHHRNQCQYCRLKKCLKVGMRREA 104
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ QC+ + C VDK RNQC+ CRL+KC
Sbjct: 116 TGKHYGASSCDGCK-GFFRRSVRKNHQYQCRFSR----NCTVDKDKRNQCRYCRLRKCFR 170
Query: 62 MGMNKDDAQHLKNSL 76
GM ++ Q+ ++ +
Sbjct: 171 AGMKREAVQNERDRI 185
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK RNQC+ CRL+KC GM ++
Sbjct: 150 CTVDKDKRNQCRYCRLRKCFRAGMKREA 177
>gi|431894415|gb|ELK04215.1| Hepatocyte nuclear factor 4-alpha [Pteropus alecto]
Length = 484
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|313237532|emb|CBY12680.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C +++ +C +DKAHRNQC+ACRL+ CL + MN+D
Sbjct: 43 SYVCKGIIQGQCPIDKAHRNQCRACRLEHCLKVRMNRD 80
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
G+C +DKAHRNQC+ACRL+ CL + MN+D Q
Sbjct: 52 GQCPIDKAHRNQCRACRLEHCLKVRMNRDAVQ 83
>gi|432867223|ref|XP_004071086.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 431
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 58 KCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ L +G + A+ + A +L +CIVDK RNQC+ CRLKKC GM K+
Sbjct: 39 QVLPLGTDSSPAESTNMNPTGHLAAGSLFSRQCIVDKDKRNQCRYCRLKKCFRAGMKKEA 98
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 17 GTERCIVDKAHRNQCQACQAGT---GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
GT+ + + N AG+ +CIVDK RNQC+ CRLKKC GM K+ Q+ +
Sbjct: 44 GTDSSPAESTNMNPTGHLAAGSLFSRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER 103
Query: 74 NSL 76
+ +
Sbjct: 104 DRI 106
>gi|195020891|ref|XP_001985288.1| GH16981 [Drosophila grimshawi]
gi|193898770|gb|EDV97636.1| GH16981 [Drosophila grimshawi]
Length = 509
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 51 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 94
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 52 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 80
>gi|161076819|ref|NP_001097126.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
gi|157400121|gb|ABV53653.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
Length = 708
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 154 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 208
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 209 AGMKKEAVQNERDRI 223
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 188 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 215
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C++DK RNQC+ CRLKKC
Sbjct: 69 TGKHYGASSCDGCK-GFFRRSVRKNHIYSCRFSR----QCVIDKDKRNQCRYCRLKKCFR 123
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 124 AGMKKEAVQNERDRI 138
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRLKKC GM K+
Sbjct: 102 QCVIDKDKRNQCRYCRLKKCFRAGMKKEA 130
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N AC+ + +CIVDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSV----RKNHVYACRF-SRQCIVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCIVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|332209104|ref|XP_003253650.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Nomascus
leucogenys]
Length = 396
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 55 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 109
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 110 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 140
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 69 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 114
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I +N +C+ +CIVDK RNQC+ CRLKKC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI----RKNHVYSCRFNR-QCIVDKDKRNQCRYCRLKKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 100 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 128
>gi|395510982|ref|XP_003759744.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Sarcophilus harrisii]
Length = 455
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 100 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 128
>gi|308501681|ref|XP_003113025.1| CRE-NHR-239 protein [Caenorhabditis remanei]
gi|308265326|gb|EFP09279.1| CRE-NHR-239 protein [Caenorhabditis remanei]
Length = 288
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C +R + +N C AG RC+VDK+ RN C ACRL KC +
Sbjct: 34 RHYGVWACDGCSCFFKRSV----RKNIIYTCIAGNWRCVVDKSRRNWCPACRLAKCTKLN 89
Query: 64 MNKDDAQH 71
MN+ Q+
Sbjct: 90 MNRLAVQN 97
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNK 115
RC+VDK+ RN C ACRL KC + MN+
Sbjct: 66 RCVVDKSRRNWCPACRLAKCTKLNMNR 92
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 36 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 90
Query: 64 MNKD 67
M K+
Sbjct: 91 MRKE 94
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
C +D+ HRNQCQ CRLKKC +GM K+G+
Sbjct: 68 CQIDQHHRNQCQYCRLKKCFRVGMRKEGE 96
>gi|170574027|ref|XP_001892642.1| Nuclear hormone receptor family member nhr-40 [Brugia malayi]
gi|158601685|gb|EDP38529.1| Nuclear hormone receptor family member nhr-40, putative [Brugia
malayi]
Length = 508
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K QCQ + CIVDK+ R C++CRLKKC MGM+ + QH +
Sbjct: 73 CKTFFRRALVNK-QAFQCQF----SDDCIVDKSVRCGCRSCRLKKCFEMGMDPNAIQHDR 127
Query: 74 NSLLY 78
+ + Y
Sbjct: 128 DKIRY 132
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDK+ R C++CRLKKC MGM+ +
Sbjct: 95 CIVDKSVRCGCRSCRLKKCFEMGMDPNA 122
>gi|301620547|ref|XP_002939634.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Xenopus
(Silurana) tropicalis]
Length = 453
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K H C+ + +CIVDK RNQC+ CRLKKC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKCHVYSCRFSR----QCIVDKDKRNQCRYCRLKKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRLKKC GM K+
Sbjct: 100 QCIVDKDKRNQCRYCRLKKCFRAGMKKEA 128
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKD 67
M ++
Sbjct: 141 MRRE 144
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++ S+
Sbjct: 100 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVSSL 148
>gi|327287252|ref|XP_003228343.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis
carolinensis]
Length = 459
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C++DK RNQC+ CRLKKC
Sbjct: 67 TGKHYGASSCDGCK-GFFRRSVRKNHIYSCRFSR----QCVIDKDKRNQCRYCRLKKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRLKKC GM K+
Sbjct: 100 QCVIDKDKRNQCRYCRLKKCFRAGMKKEA 128
>gi|195591922|ref|XP_002085685.1| GD12173 [Drosophila simulans]
gi|194197694|gb|EDX11270.1| GD12173 [Drosophila simulans]
Length = 599
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|332209102|ref|XP_003253649.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Nomascus
leucogenys]
Length = 418
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|24582909|ref|NP_723413.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
gi|22945983|gb|AAN10680.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
Length = 732
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 178 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 232
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 233 AGMKKEAVQNERDRI 247
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 212 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 239
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 58 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 112
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 113 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 143
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 72 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 117
>gi|148230541|ref|NP_001087654.1| nuclear receptor subfamily 2 group C member 1-B [Xenopus laevis]
gi|82198455|sp|Q66J63.1|N2C1B_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-B;
AltName: Full=Developmental orphan receptor 2-B;
Short=DOR2-B; Short=xDOR2-B; AltName: Full=Orphan
nuclear receptor TR2-B; AltName: Full=Testicular
receptor 2-B
gi|51703645|gb|AAH81046.1| MGC81787 protein [Xenopus laevis]
Length = 637
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+ C+++K +RN+CQ CRL++C+++G
Sbjct: 162 RHYGAVTCEGCKGFFKRSI----RKNLIYTCR-GSKDCVINKHYRNRCQYCRLQRCISLG 216
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 217 MKQDSVQ 223
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K +RN+CQ CRL++C+++GM +D
Sbjct: 194 CVINKHYRNRCQYCRLQRCISLGMKQD 220
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 144 MRREAVQ 150
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 121 CPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 196 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 250
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 251 MRREAVQ 257
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 228 CPIDQHHRNQCQYCRLKKCLKVGMRREA 255
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKD 67
M ++
Sbjct: 141 MRRE 144
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 44 DKAHRNQCQACRLKKCLNMGMNKDDAQH------------LKNSLLYEFACTNLVELRCI 91
DK +N Q+ + +C+ G +K +H K S+ T C
Sbjct: 61 DKGSQNSGQSQQHIECVVCG-DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCP 119
Query: 92 VDKAHRNQCQACRLKKCLNMGMNKD 116
+D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|357612132|gb|EHJ67823.1| putative PNR-like protein [Danaus plexippus]
Length = 431
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G CIVD + RNQCQACR KCL +
Sbjct: 19 KHYGVPSCDGCRGFFKRSI----RRNLDYICKE-NGSCIVDVSRRNQCQACRFSKCLRVN 73
Query: 64 MNKDDAQH 71
M KD Q+
Sbjct: 74 MKKDAVQN 81
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVD + RNQCQACR KCL + M KD
Sbjct: 51 CIVDVSRRNQCQACRFSKCLRVNMKKDA 78
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I N+ C++ + C VDK+ RNQC+ACRL++C +
Sbjct: 23 KHYGVYTCDGCSGFFKRSI----RHNRNYTCKSPSSAPCPVDKSRRNQCRACRLQRCFQV 78
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 79 NMNKDAVQH 87
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 63 GMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
G K +H +N + C + C VDK+ RNQC+ACRL++C + MNKD
Sbjct: 35 GFFKRSIRHNRN-----YTCKSPSSAPCPVDKSRRNQCRACRLQRCFQVNMNKDA 84
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKD 67
M ++
Sbjct: 147 MRRE 150
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|195127668|ref|XP_002008290.1| GI11896 [Drosophila mojavensis]
gi|193919899|gb|EDW18766.1| GI11896 [Drosophila mojavensis]
Length = 469
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKD 67
M ++
Sbjct: 147 MRRE 150
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|51860121|gb|AAU11312.1| COUP-TF1 nuclear orphan receptor, partial [Hydra vulgaris]
Length = 453
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH-- 71
C++ +R I RN C+A C +D HRNQCQ CRLKKC+ +GM KD Q
Sbjct: 2 CKSFFKRSI----RRNLAYTCRAFQN-CSIDLNHRNQCQYCRLKKCVKVGMRKDAVQKGR 56
Query: 72 -----LKNSLLYEFACTN 84
L+ S++ +F N
Sbjct: 57 LPKSPLEGSMVDQFIAMN 74
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ A T C +D HRNQCQ CRLKKC+ +GM KD
Sbjct: 6 FKRSIRRNLAYTCRAFQNCSIDLNHRNQCQYCRLKKCVKVGMRKDA 51
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 63 KHYGVFTCEGCKSFFKRSV----RRNLNYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 117
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 118 MRKEAVQ 124
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 122
>gi|1575768|gb|AAB09592.1| hepatocyte nuclear factor 4 homolog [Drosophila melanogaster]
Length = 666
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 112 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 166
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 167 AGMKKEAVQNERDRI 181
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 146 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 173
>gi|195339307|ref|XP_002036261.1| GM12759 [Drosophila sechellia]
gi|194130141|gb|EDW52184.1| GM12759 [Drosophila sechellia]
Length = 703
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 149 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 203
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 204 AGMKKEAVQNERDRI 218
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 183 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 210
>gi|157117589|ref|XP_001658840.1| nuclear receptor [Aedes aegypti]
Length = 314
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R I RN C+ G G+C+VD + RNQCQACR KCL
Sbjct: 26 KHYGVPSCDGCRGFFKRSI----RRNLEYVCKEG-GKCVVDVSRRNQCQACRFAKCLQAN 80
Query: 64 MNKDDAQH 71
M ++ QH
Sbjct: 81 MRREAVQH 88
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+C+VD + RNQCQACR KCL M ++
Sbjct: 57 KCVVDVSRRNQCQACRFAKCLQANMRRE 84
>gi|341873951|gb|EGT29886.1| CBN-NHR-40 protein [Caenorhabditis brenneri]
Length = 450
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K QCQ TG C+V K+ R C++CRLKKC +MGM+ QH +
Sbjct: 51 CKTFFRRALVNK-QTFQCQF----TGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDR 105
Query: 74 NSLLY 78
+ + Y
Sbjct: 106 DKIRY 110
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C+V K+ R C++CRLKKC +MGM+
Sbjct: 73 CVVGKSVRCVCRSCRLKKCFDMGMD 97
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
RN +C+ G C +D+ HRNQCQ CRLKKCL MGM ++ Q
Sbjct: 31 RNLTYSCR-GNRNCPIDQHHRNQCQFCRLKKCLKMGMRREAVQ 72
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 43 CPIDQHHRNQCQFCRLKKCLKMGMRREA 70
>gi|312072277|ref|XP_003138992.1| nuclear hormone receptor family member nhr-40 [Loa loa]
Length = 466
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K QCQ + CIVDK+ R C++CRLKKC MGM+ + QH +
Sbjct: 30 CKTFFRRALVNK-QAFQCQF----SDDCIVDKSVRCGCRSCRLKKCFEMGMDPNAIQHDR 84
Query: 74 NSLLY 78
+ + Y
Sbjct: 85 DKIRY 89
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDK+ R C++CRLKKC MGM+ +
Sbjct: 52 CIVDKSVRCGCRSCRLKKCFEMGMDPNA 79
>gi|241669014|gb|ACS68165.1| FI04795p [Drosophila melanogaster]
Length = 738
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 184 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 238
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 239 AGMKKEAVQNERDRI 253
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 218 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 245
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|351696464|gb|EHA99382.1| Glucocorticoid receptor [Heterocephalus glaber]
Length = 774
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 429 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 484
Query: 65 N 65
N
Sbjct: 485 N 485
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 461 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 489
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 21 CIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
C ++ R + G G C+VDKA RN C CRLKKC + MNK Q
Sbjct: 33 CFFKRSIRRNMRYTCIGKGNCLVDKARRNWCPYCRLKKCFAVNMNKSAVQ 82
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNK 115
C+VDKA RN C CRLKKC + MNK
Sbjct: 53 CLVDKARRNWCPYCRLKKCFAVNMNK 78
>gi|393907511|gb|EFO25074.2| nuclear hormone receptor family member nhr-40 [Loa loa]
Length = 471
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K QCQ + CIVDK+ R C++CRLKKC MGM+ + QH +
Sbjct: 35 CKTFFRRALVNK-QAFQCQF----SDDCIVDKSVRCGCRSCRLKKCFEMGMDPNAIQHDR 89
Query: 74 NSLLY 78
+ + Y
Sbjct: 90 DKIRY 94
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVDK+ R C++CRLKKC MGM+ +
Sbjct: 57 CIVDKSVRCGCRSCRLKKCFEMGMDPNA 84
>gi|12644293|sp|P49866.2|HNF4_DROME RecName: Full=Transcription factor HNF-4 homolog; Short=dHNF4;
AltName: Full=Nuclear receptor subfamily 2 group A
member 4
Length = 666
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 112 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 166
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 167 AGMKKEAVQNERDRI 181
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 146 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 173
>gi|417411923|gb|JAA52380.1| Putative retinoic acid receptor gamma-like isoform 1, partial
[Desmodus rotundus]
Length = 609
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 252 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 306
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 307 SKEAVRNDRNKKKKEVKEEGSLDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 360
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 283 CIINKVTRNRCQYCRLQKCFEVGMSKEA 310
>gi|195577679|ref|XP_002078696.1| GD22387 [Drosophila simulans]
gi|194190705|gb|EDX04281.1| GD22387 [Drosophila simulans]
Length = 703
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 149 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 203
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 204 AGMKKEAVQNERDRI 218
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 183 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 210
>gi|440900685|gb|ELR51764.1| Retinoic acid receptor gamma, partial [Bos grunniens mutus]
Length = 577
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 220 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 274
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 275 SKEAVRNDRNKKKKEVKEEGSLDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 328
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 251 CIINKVTRNRCQYCRLQKCFEVGMSKEA 278
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 92 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 146
Query: 64 MNKD 67
M ++
Sbjct: 147 MRRE 150
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|167882811|gb|ACA05925.1| nuclear receptor subfamily 3, group C, member 2 variant 3 [Homo
sapiens]
gi|239740368|gb|ACS13717.1| mineralocorticoid receptor 2 [Homo sapiens]
Length = 988
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + K C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRAVEGKCSWQHNYLC-AGRNDCIIDKIRRKNCPACRLQKCLQAGM 672
Query: 65 N 65
N
Sbjct: 673 N 673
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 649 CIIDKIRRKNCPACRLQKCLQAGMN 673
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C++ + C ++K HRN+CQ CRL+KCL++G
Sbjct: 157 RHYGAISCEGCKGFFKRSI----RKNLGYVCRS-SKECPINKHHRNRCQYCRLQKCLSVG 211
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 212 MRSESVQ 218
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C ++K HRN+CQ CRL+KCL++GM +
Sbjct: 189 CPINKHHRNRCQYCRLQKCLSVGMRSE 215
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 35 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCVVDKDKRNQCRYCRLKKCFR 89
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 90 AGMKKEAVQNERDRI 104
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 68 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 96
>gi|118344424|ref|NP_001072033.1| nuclear receptor [Ciona intestinalis]
gi|70569872|dbj|BAE06493.1| nuclear receptor [Ciona intestinalis]
Length = 464
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ QC+ + C VDK RNQC+ CRL+KC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHQYQCRFSR----NCTVDKDKRNQCRYCRLRKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM ++ Q+ ++ +
Sbjct: 123 AGMKREAVQNERDRI 137
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK RNQC+ CRL+KC GM ++
Sbjct: 102 CTVDKDKRNQCRYCRLRKCFRAGMKREA 129
>gi|345494488|ref|XP_001604432.2| PREDICTED: orphan steroid hormone receptor 2 isoform 1 [Nasonia
vitripennis]
Length = 659
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 37 GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77
G+ C V K HRN+CQ CRL+KCL MGM D QH + +L
Sbjct: 282 GSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDSVQHERKPVL 322
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 286 CEVTKHHRNRCQYCRLQKCLAMGMRSD 312
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 88 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 142
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 143 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 173
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 102 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 147
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 97 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 151
Query: 64 MNKDDAQHLK 73
M K+ K
Sbjct: 152 MRKEGTHPTK 161
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+G
Sbjct: 129 CQIDQHHRNQCQYCRLKKCFRVGMRKEG 156
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I +N C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 66 TGKHYGASSCDGCKGFFRRSI----RKNHVYTCRF-SRQCVVDKDKRNQCRYCRLKKCFR 120
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 121 AGMKKEAVQNERDRI 135
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 99 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 127
>gi|345494486|ref|XP_003427303.1| PREDICTED: orphan steroid hormone receptor 2 isoform 2 [Nasonia
vitripennis]
gi|345494490|ref|XP_003427304.1| PREDICTED: orphan steroid hormone receptor 2 isoform 3 [Nasonia
vitripennis]
Length = 626
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 37 GTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77
G+ C V K HRN+CQ CRL+KCL MGM D QH + +L
Sbjct: 249 GSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDSVQHERKPVL 289
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN+CQ CRL+KCL MGM D
Sbjct: 253 CEVTKHHRNRCQYCRLQKCLAMGMRSD 279
>gi|308498015|ref|XP_003111194.1| CRE-NHR-2 protein [Caenorhabditis remanei]
gi|308240742|gb|EFO84694.1| CRE-NHR-2 protein [Caenorhabditis remanei]
Length = 465
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 31 CQ---ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CQ ACQ C +++ R +CQACR K+C+ MGMNKD +
Sbjct: 281 CQKGAACQFSYENCAMNRGARTRCQACRFKRCVEMGMNKDSVK 323
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
C +++ R +CQACR K+C+ MGMNKD M
Sbjct: 294 CAMNRGARTRCQACRFKRCVEMGMNKDSVKM 324
>gi|71996665|ref|NP_001022382.1| Protein NHR-61, isoform b [Caenorhabditis elegans]
gi|3880420|emb|CAB05637.1| Protein NHR-61, isoform b [Caenorhabditis elegans]
Length = 415
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL++G
Sbjct: 40 KHYGVNACNGCKGFFRRSI----WKNRTYACRHG-GKCLVAKEQRNACRSCRLTRCLDVG 94
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 95 MNPRAVQ 101
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL++GMN
Sbjct: 71 KCLVAKEQRNACRSCRLTRCLDVGMN 96
>gi|71725336|ref|NP_001025175.1| hepatocyte nuclear factor 4-alpha isoform f [Homo sapiens]
gi|50980773|gb|AAT91239.1| hepatocyte nuclear factor 4 alpha, transcript variant 9 [Homo
sapiens]
Length = 395
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 46 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 100
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 101 AGMKKEAVQNERDRI 115
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 79 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 107
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R + RN C+A + C +D+ HRNQCQ CRL+KC+ +G
Sbjct: 40 KHYGVFTCEGCKSFFKRSV----RRNLSYTCRA-SRNCPIDQHHRNQCQYCRLRKCMKVG 94
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 95 MRREAVQ 101
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRL+KC+ +GM ++
Sbjct: 54 FKRSVRRNLSYTCRASRNCPIDQHHRNQCQYCRLRKCMKVGMRREA 99
>gi|380020371|ref|XP_003694060.1| PREDICTED: uncharacterized protein LOC100868611, partial [Apis
florea]
Length = 396
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 16 CKNG-GVCVINKKNRTACKACRLRKCLMVGMSKSGSRYGRRSNWFKIHC 63
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 22 CVINKKNRTACKACRLRKCLMVGMSKSG 49
>gi|195172195|ref|XP_002026884.1| GL12762 [Drosophila persimilis]
gi|194112652|gb|EDW34695.1| GL12762 [Drosophila persimilis]
Length = 455
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+C++DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCVIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 KCVIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 97 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 151
Query: 64 MNKD 67
M ++
Sbjct: 152 MRRE 155
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 12 PTCQAGTERCIVDKAHRNQCQACQAGTGRCIV--DKA---HRNQ--CQACRLKKCLNMGM 64
P T+ ++ ++Q + Q C+V DK+ H Q C+ C+
Sbjct: 58 PNNNNNTQSTPTNQTTQSQSEKQQPQHIECVVCGDKSSGKHYGQFTCEGCK--------- 108
Query: 65 NKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
K S+ T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 109 -----SFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRRE 155
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G C +D+ HRNQCQ CR KKCL G
Sbjct: 102 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GNRNCPIDQHHRNQCQYCRFKKCLKSG 156
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 157 MRREAVQ 163
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CR KKCL GM ++
Sbjct: 134 CPIDQHHRNQCQYCRFKKCLKSGMRREA 161
>gi|24582907|ref|NP_476887.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|442626918|ref|NP_723414.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
gi|22945982|gb|AAF52702.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|28317035|gb|AAO39537.1| RE09535p [Drosophila melanogaster]
gi|220942524|gb|ACL83805.1| Hnf4-PA [synthetic construct]
gi|220952740|gb|ACL88913.1| Hnf4-PA [synthetic construct]
gi|440213579|gb|AAF52703.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
Length = 704
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 150 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 204
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 205 AGMKKEAVQNERDRI 219
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 184 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 211
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 71 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 125
Query: 64 MNKD 67
M ++
Sbjct: 126 MRRE 129
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 CPIDQHHRNQCQYCRLKKCLKVGMRRE 129
>gi|148613151|gb|ABQ96200.1| UNC-55a isoform [Caenorhabditis briggsae]
Length = 362
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R I R+ C+A T C +D HRNQCQ CRL KC+ MG
Sbjct: 21 KHYGQFSCEGCKSFFKRSI----RRSLSYTCRA-TKNCAIDVQHRNQCQYCRLTKCIRMG 75
Query: 64 MNKD 67
M K+
Sbjct: 76 MRKE 79
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
K S+ + T C +D HRNQCQ CRL KC+ MGM K+G+
Sbjct: 35 FKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCIRMGMRKEGR 81
>gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4-alpha isoform c [Homo sapiens]
gi|119596330|gb|EAW75924.1| hepatocyte nuclear factor 4, alpha, isoform CRA_d [Homo sapiens]
gi|187952661|gb|AAI37541.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|187953631|gb|AAI37540.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 417
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|10198047|gb|AAG15158.1| nuclear receptor NHR-61 [Caenorhabditis elegans]
Length = 418
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL++G
Sbjct: 43 KHYGVNACNGCKGFFRRSI----WKNRTYACRHG-GKCLVAKEQRNACRSCRLTRCLDVG 97
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 98 MNPRAVQ 104
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL++GMN
Sbjct: 74 KCLVAKEQRNACRSCRLTRCLDVGMN 99
>gi|345793141|ref|XP_544134.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Canis lupus
familiaris]
Length = 446
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|320543744|ref|NP_788302.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
gi|318068560|gb|AAO41454.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
Length = 874
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 481 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 509
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 481 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 508
>gi|321470051|gb|EFX81029.1| dissatisfaction-like protein [Daphnia pulex]
Length = 394
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 17/81 (20%)
Query: 8 MTDHPTCQAGTERCIVDKAHRNQCQACQAGTGR---CIVDKAHRNQCQACRLKKCLNMGM 64
+TD +C +R I HR + C+A C VDK HRNQC+ACRL KC M
Sbjct: 34 LTD--SCSGFFKRSI----HRARVYTCKAQGDLKNCCPVDKTHRNQCRACRLHKCFAANM 87
Query: 65 NKDDAQH--------LKNSLL 77
NKD QH LK+SL+
Sbjct: 88 NKDAVQHERGPRKPRLKDSLM 108
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDK HRNQC+ACRL KC MNKD
Sbjct: 64 CPVDKTHRNQCRACRLHKCFAANMNKDA 91
>gi|71996656|ref|NP_001022381.1| Protein NHR-61, isoform a [Caenorhabditis elegans]
gi|17368027|sp|O62389.2|NHR61_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-61
gi|3880419|emb|CAB05636.1| Protein NHR-61, isoform a [Caenorhabditis elegans]
Length = 412
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL++G
Sbjct: 40 KHYGVNACNGCKGFFRRSI----WKNRTYACRHG-GKCLVAKEQRNACRSCRLTRCLDVG 94
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 95 MNPRAVQ 101
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL++GMN
Sbjct: 71 KCLVAKEQRNACRSCRLTRCLDVGMN 96
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R + ++ AC+ C++DK RN+CQ CR +KCL MG
Sbjct: 170 KHYGVYSCEGCKGFFKRTV----RKDLTYACRDNRD-CVIDKRQRNRCQYCRYQKCLAMG 224
Query: 64 MNKDDAQ 70
M ++D Q
Sbjct: 225 MKREDVQ 231
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C++DK RN+CQ CR +KCL MGM ++
Sbjct: 202 CVIDKRQRNRCQYCRYQKCLAMGMKRE 228
>gi|1595754|emb|CAA61135.1| Hepatocyte nuclear factor 4C [Homo sapiens]
gi|1843523|gb|AAB48083.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 408
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 59 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 113
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 114 AGMKKEAVQNERDRI 128
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 92 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 120
>gi|118344432|ref|NP_001072038.1| nuclear receptor [Ciona intestinalis]
gi|70571084|dbj|BAE06676.1| nuclear receptor [Ciona intestinalis]
Length = 651
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
G CI+D+++RN+CQ CRL+KCL GM+KD
Sbjct: 54 GNCIIDRSNRNRCQHCRLQKCLRAGMSKD 82
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 78 YEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
Y ++C CI+D+++RN+CQ CRL+KCL GM+KD
Sbjct: 46 YAYSCPR--HGNCIIDRSNRNRCQHCRLQKCLRAGMSKDA 83
>gi|1588511|prf||2208436B hepatocyte nuclear factor 4
Length = 774
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 386 TGKHYGASTCDGCKGFFRRSI-RKSHIYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 440
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 441 AGMKKEAVQNERDRI 455
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 419 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 447
>gi|391852154|ref|NP_001254678.1| mineralocorticoid receptor [Callithrix jacchus]
gi|31324675|gb|AAP48591.1| mineralocorticoid receptor +4 isoform [Callithrix jacchus]
Length = 987
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + K C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRAVEGKCSWQHNYLC-AGRNDCIIDKIRRKNCPACRLQKCLQAGM 671
Query: 65 N 65
N
Sbjct: 672 N 672
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 648 CIIDKIRRKNCPACRLQKCLQAGMN 672
>gi|410908921|ref|XP_003967939.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Takifugu
rubripes]
Length = 453
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +CIVDK RNQC+ CRL KC
Sbjct: 68 TGKHYGASSCDGCKGFFRRSI-RKSHIYTCRFSR----QCIVDKDKRNQCRFCRLNKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL KC GM K+
Sbjct: 101 QCIVDKDKRNQCRFCRLNKCFRAGMKKEA 129
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R I R+ C+ G+ C VD HRNQCQ CRLKKC MG
Sbjct: 198 KHYGQFSCEGCKSFFKRSI----RRSLNYTCR-GSKNCPVDVNHRNQCQYCRLKKCERMG 252
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 253 MRKEAVQ 259
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD HRNQCQ CRLKKC MGM K+
Sbjct: 230 CPVDVNHRNQCQYCRLKKCERMGMRKEA 257
>gi|432929881|ref|XP_004081273.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 454
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +CIVDK RNQC+ CRL KC
Sbjct: 69 TGKHYGASSCDGCKGFFRRSI-RKSHVYTCRFSR----QCIVDKDKRNQCRFCRLNKCFR 123
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 124 AGMKKEAVQNERDRI 138
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL KC GM K+
Sbjct: 102 QCIVDKDKRNQCRFCRLNKCFRAGMKKEA 130
>gi|301788566|ref|XP_002929700.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Ailuropoda
melanoleuca]
Length = 455
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|222431979|gb|ACM50916.1| HNF4alpha10 [Rattus norvegicus]
Length = 403
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 70 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 124
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 125 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 155
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 84 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 129
>gi|194858671|ref|XP_001969229.1| GG24056 [Drosophila erecta]
gi|190661096|gb|EDV58288.1| GG24056 [Drosophila erecta]
Length = 704
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 150 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFSR----NCVVDKDKRNQCRYCRLRKCFK 204
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 205 AGMKKEAVQNERDRI 219
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 184 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 211
>gi|2529508|gb|AAB81178.1| developmental orphan receptor 2 [Xenopus laevis]
Length = 542
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+ C+++K +RN+CQ CRL++C+++G
Sbjct: 135 RHYGAVTCEGCKGFFKRSI----RKNLVYTCR-GSKDCVINKHYRNRCQYCRLQRCMSLG 189
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 190 MKQDSVQ 196
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K +RN+CQ CRL++C+++GM +D
Sbjct: 167 CVINKHYRNRCQYCRLQRCMSLGMKQD 193
>gi|357623903|gb|EHJ74874.1| nuclear orphan receptor [Danaus plexippus]
Length = 468
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G+ C V K HRN+CQ CRL+KCL G
Sbjct: 32 RHYGAISCEGCKGFFKRSIRKKLGY-QCR----GSMNCEVTKHHRNRCQYCRLQKCLACG 86
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 87 MRSDSVQHERKPIV 100
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 62 MNCEVTKHHRNRCQYCRLQKCLACGMRSD 90
>gi|312070472|ref|XP_003138162.1| steroid hormone receptor [Loa loa]
Length = 421
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 75 SLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
S L + C + +CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 46 STLNNYQCPR--QQKCIVDRVNRNRCQYCRLKKCLELGMSRDA 86
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 58 KCIVDRVNRNRCQYCRLKKCLELGMSRD 85
>gi|84028527|gb|ABC49722.1| thyroid hormone receptor 1 [Petromyzon marinus]
Length = 371
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+ R I K H + AC+ G GRC VD+ RNQCQ CR +KCL GM D
Sbjct: 37 CKGFFRRTIQKKLHPSY--ACKFG-GRCAVDRVTRNQCQECRFRKCLAAGMAAD 87
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
RC VD+ RNQCQ CR +KCL GM D
Sbjct: 60 RCAVDRVTRNQCQECRFRKCLAAGMAAD 87
>gi|222431985|gb|ACM50919.1| HNF4alpha10 [Mus musculus]
Length = 403
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|195378652|ref|XP_002048097.1| GJ13774 [Drosophila virilis]
gi|194155255|gb|EDW70439.1| GJ13774 [Drosophila virilis]
Length = 654
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 84 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 138
Query: 64 MNKD 67
M ++
Sbjct: 139 MRRE 142
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 116 CPIDQHHRNQCQYCRLKKCLKVGMRRE 142
>gi|144227212|ref|NP_001077375.1| mineralocorticoid receptor [Mus musculus]
gi|126631956|gb|AAI33714.1| Nr3c2 protein [Mus musculus]
Length = 980
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|226817306|ref|NP_001152817.1| mineralocorticoid receptor [Gallus gallus]
Length = 981
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 615 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 669
Query: 65 N 65
N
Sbjct: 670 N 670
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 646 CIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKD 67
M ++
Sbjct: 144 MRRE 147
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRRE 147
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C VD+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPVDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKD 67
M ++
Sbjct: 119 MRRE 122
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
K S+ + T C VD+ HRNQCQ CRLKKCL +GM ++
Sbjct: 78 FKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|322802301|gb|EFZ22697.1| hypothetical protein SINV_09414 [Solenopsis invicta]
Length = 400
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75
AC+ G G C ++K +R C+ACRLKKCL +GM+K +++ + S
Sbjct: 30 ACKNG-GNCTINKRNRTACKACRLKKCLEVGMSKSSSRYGRRS 71
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNK 115
C ++K +R C+ACRLKKCL +GM+K
Sbjct: 37 CTINKRNRTACKACRLKKCLEVGMSK 62
>gi|225936142|gb|ACO37437.1| mineralocorticoid receptor [Gallus gallus]
Length = 986
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 620 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 674
Query: 65 N 65
N
Sbjct: 675 N 675
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 651 CIIDKIRRKNCPACRLQKCLQAGMN 675
>gi|149037980|gb|EDL92340.1| nuclear receptor subfamily 3, group C, member 2 [Rattus norvegicus]
Length = 880
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 615 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 669
Query: 65 N 65
N
Sbjct: 670 N 670
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 646 CIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|6981208|ref|NP_037263.1| mineralocorticoid receptor [Rattus norvegicus]
gi|126886|sp|P22199.1|MCR_RAT RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|205341|gb|AAA41583.1| mineralocorticoid receptor [Rattus norvegicus]
Length = 981
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 615 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 669
Query: 65 N 65
N
Sbjct: 670 N 670
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 646 CIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|410055259|ref|XP_514664.4| PREDICTED: hepatocyte nuclear factor 4-alpha [Pan troglodytes]
Length = 482
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76
+C+VDK RNQC+ CRLKKC GM K+ Q+ ++ +
Sbjct: 97 QCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRI 133
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 97 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 125
>gi|198463927|ref|XP_001352999.2| GA18413 [Drosophila pseudoobscura pseudoobscura]
gi|198151467|gb|EAL30500.2| GA18413 [Drosophila pseudoobscura pseudoobscura]
Length = 705
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|195473133|ref|XP_002088850.1| GE10817 [Drosophila yakuba]
gi|194174951|gb|EDW88562.1| GE10817 [Drosophila yakuba]
Length = 703
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 149 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFSR----NCVVDKDKRNQCRYCRLRKCFK 203
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 204 AGMKKEAVQNERDRI 218
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 183 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 210
>gi|195020902|ref|XP_001985290.1| GH16982 [Drosophila grimshawi]
gi|193898772|gb|EDV97638.1| GH16982 [Drosophila grimshawi]
Length = 682
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|194875072|ref|XP_001973520.1| GG13294 [Drosophila erecta]
gi|190655303|gb|EDV52546.1| GG13294 [Drosophila erecta]
Length = 643
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|10198051|gb|AAG15160.1| nuclear receptor NHR-61 [Caenorhabditis elegans]
Length = 415
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL++G
Sbjct: 43 KHYGVNACNGCKGFFRRSI----WKNRTYACRHG-GKCLVAKEQRNACRSCRLTRCLDVG 97
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 98 MNPRAVQ 104
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL++GMN
Sbjct: 74 KCLVAKEQRNACRSCRLTRCLDVGMN 99
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 41 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 95
Query: 64 MNKD 67
M ++
Sbjct: 96 MRRE 99
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++G
Sbjct: 73 CPIDQHHRNQCQYCRLKKCLKVGMRREG 100
>gi|440898702|gb|ELR50134.1| Glucocorticoid receptor [Bos grunniens mutus]
Length = 782
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 436 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 491
Query: 65 N 65
N
Sbjct: 492 N 492
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 468 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 496
>gi|432095516|gb|ELK26668.1| Usher syndrome type-1C protein-binding protein 1 [Myotis davidii]
Length = 768
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLY 78
K + + C+A ++ C +D+ HRNQCQ CRLKKC +GM K++ LK L+
Sbjct: 623 KLNNDLCKAHRSNRD-CQIDQHHRNQCQYCRLKKCFRVGMRKEEYGCLKAIALF 675
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 638 CQIDQHHRNQCQYCRLKKCFRVGMRKE 664
>gi|317419814|emb|CBN81850.1| Hepatocyte nuclear factor 4, gamma [Dicentrarchus labrax]
Length = 455
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +CIVDK RNQC+ CRL KC
Sbjct: 70 TGKHYGASSCDGCKGFFRRSI-RKSHVYTCRFSR----QCIVDKDKRNQCRFCRLNKCFR 124
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 125 AGMKKEAVQNERDRI 139
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL KC GM K+
Sbjct: 103 QCIVDKDKRNQCRFCRLNKCFRAGMKKEA 131
>gi|66528677|ref|NP_001019265.1| glucocorticoid receptor isoform gamma [Homo sapiens]
gi|458657|gb|AAA16603.1| glucocorticoid receptor alpha-2 [Homo sapiens]
gi|119582274|gb|EAW61870.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor), isoform CRA_a [Homo sapiens]
gi|311348220|gb|ADP91136.1| glucocorticoid receptor [Homo sapiens]
gi|311348224|gb|ADP91139.1| glucocorticoid receptor [Homo sapiens]
gi|311348228|gb|ADP91142.1| glucocorticoid receptor [Homo sapiens]
gi|311348232|gb|ADP91145.1| glucocorticoid receptor [Homo sapiens]
gi|311348236|gb|ADP91148.1| glucocorticoid receptor [Homo sapiens]
gi|311348240|gb|ADP91151.1| glucocorticoid receptor [Homo sapiens]
gi|311348244|gb|ADP91154.1| glucocorticoid receptor [Homo sapiens]
gi|311348248|gb|ADP91157.1| glucocorticoid receptor [Homo sapiens]
gi|311348252|gb|ADP91160.1| glucocorticoid receptor [Homo sapiens]
gi|311348256|gb|ADP91163.1| glucocorticoid receptor [Homo sapiens]
gi|311348260|gb|ADP91166.1| glucocorticoid receptor [Homo sapiens]
gi|311348264|gb|ADP91169.1| glucocorticoid receptor [Homo sapiens]
gi|311348268|gb|ADP91172.1| glucocorticoid receptor [Homo sapiens]
gi|311348272|gb|ADP91175.1| glucocorticoid receptor [Homo sapiens]
gi|311348276|gb|ADP91178.1| glucocorticoid receptor [Homo sapiens]
gi|311348280|gb|ADP91181.1| glucocorticoid receptor [Homo sapiens]
gi|311348284|gb|ADP91184.1| glucocorticoid receptor [Homo sapiens]
gi|311348288|gb|ADP91187.1| glucocorticoid receptor [Homo sapiens]
gi|311348292|gb|ADP91190.1| glucocorticoid receptor [Homo sapiens]
gi|311348296|gb|ADP91193.1| glucocorticoid receptor [Homo sapiens]
gi|311348300|gb|ADP91196.1| glucocorticoid receptor [Homo sapiens]
gi|311348304|gb|ADP91199.1| glucocorticoid receptor [Homo sapiens]
gi|311348308|gb|ADP91202.1| glucocorticoid receptor [Homo sapiens]
gi|311348312|gb|ADP91205.1| glucocorticoid receptor [Homo sapiens]
gi|311348316|gb|ADP91208.1| glucocorticoid receptor [Homo sapiens]
gi|311348320|gb|ADP91211.1| glucocorticoid receptor [Homo sapiens]
gi|311348324|gb|ADP91214.1| glucocorticoid receptor [Homo sapiens]
gi|311348328|gb|ADP91217.1| glucocorticoid receptor [Homo sapiens]
gi|311348332|gb|ADP91220.1| glucocorticoid receptor [Homo sapiens]
gi|311348336|gb|ADP91223.1| glucocorticoid receptor [Homo sapiens]
gi|311348340|gb|ADP91226.1| glucocorticoid receptor [Homo sapiens]
gi|311348344|gb|ADP91229.1| glucocorticoid receptor [Homo sapiens]
gi|311348348|gb|ADP91232.1| glucocorticoid receptor [Homo sapiens]
gi|311348352|gb|ADP91235.1| glucocorticoid receptor [Homo sapiens]
gi|311348356|gb|ADP91238.1| glucocorticoid receptor [Homo sapiens]
gi|311348360|gb|ADP91241.1| glucocorticoid receptor [Homo sapiens]
gi|311348364|gb|ADP91244.1| glucocorticoid receptor [Homo sapiens]
gi|311348368|gb|ADP91247.1| glucocorticoid receptor [Homo sapiens]
gi|311348372|gb|ADP91250.1| glucocorticoid receptor [Homo sapiens]
gi|311348376|gb|ADP91253.1| glucocorticoid receptor [Homo sapiens]
Length = 778
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 432 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 487
Query: 65 N 65
N
Sbjct: 488 N 488
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 464 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 492
>gi|197097410|ref|NP_001126305.1| glucocorticoid receptor [Pongo abelii]
gi|55731034|emb|CAH92233.1| hypothetical protein [Pongo abelii]
Length = 778
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 432 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 487
Query: 65 N 65
N
Sbjct: 488 N 488
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 464 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 492
>gi|354471113|ref|XP_003497788.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cricetulus
griseus]
Length = 455
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|332234845|ref|XP_003266613.1| PREDICTED: glucocorticoid receptor isoform 6 [Nomascus leucogenys]
Length = 778
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 432 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 487
Query: 65 N 65
N
Sbjct: 488 N 488
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 464 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 492
>gi|312382766|gb|EFR28105.1| hypothetical protein AND_04354 [Anopheles darlingi]
Length = 161
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 28/31 (90%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGKS 119
+C+VD+ +RN+CQ CRL+KCL +GM++DGKS
Sbjct: 110 QCVVDRVNRNRCQYCRLQKCLKLGMSRDGKS 140
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 110 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 137
>gi|301607929|ref|XP_002933547.1| PREDICTED: mineralocorticoid receptor-like [Xenopus (Silurana)
tropicalis]
Length = 905
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRA-VEGQHSYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 667
Query: 65 NKDDAQH 71
N +H
Sbjct: 668 NLGGKEH 674
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACRL+KCL GMN GK
Sbjct: 644 CIIDKIRRKNCPACRLQKCLQAGMNLGGK 672
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
RN +C+A C +D+ HRNQCQ CRLKKCL MGM ++ Q
Sbjct: 34 RNLTYSCRANRN-CPIDQHHRNQCQYCRLKKCLKMGMRREAVQ 75
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 46 CPIDQHHRNQCQYCRLKKCLKMGMRREA 73
>gi|268537280|ref|XP_002633776.1| C. briggsae CBR-NHR-4 protein [Caenorhabditis briggsae]
Length = 490
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74
+C+ G G C V K HRN C++CRLKKC +GMN D Q+ ++
Sbjct: 85 SCRFG-GDCPVVKEHRNVCRSCRLKKCFEVGMNPDSVQNERD 125
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN C++CRLKKC +GMN D
Sbjct: 92 CPVVKEHRNVCRSCRLKKCFEVGMNPD 118
>gi|410987323|ref|XP_003999954.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Felis
catus]
Length = 446
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|300797953|ref|NP_001178278.1| mineralocorticoid receptor [Bos taurus]
gi|296478785|tpg|DAA20900.1| TPA: nuclear receptor subfamily 3, group C, member 2-like [Bos
taurus]
Length = 984
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 616 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 670
Query: 65 N 65
N
Sbjct: 671 N 671
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 647 CIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|38147326|gb|AAR11975.1| nuclear receptor NHR-61 [Caenorhabditis elegans]
Length = 418
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL++G
Sbjct: 46 KHYGVNACNGCKGFFRRSI----WKNRTYACRHG-GKCLVAKEQRNACRSCRLTRCLDVG 100
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 101 MNPRAVQ 107
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL++GMN
Sbjct: 77 KCLVAKEQRNACRSCRLTRCLDVGMN 102
>gi|426246961|ref|XP_004017255.1| PREDICTED: mineralocorticoid receptor isoform 1 [Ovis aries]
Length = 984
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 616 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 670
Query: 65 N 65
N
Sbjct: 671 N 671
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 647 CIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|326927493|ref|XP_003209927.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Meleagris
gallopavo]
Length = 468
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C++DK RNQC+ CRLKKC
Sbjct: 78 TGKHYGASSCDGCK-GFFRRSVRKNHVYSCRFSR----QCVIDKDKRNQCRYCRLKKCFR 132
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 133 AGMKKEAVQNERDRI 147
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRLKKC GM K+
Sbjct: 111 QCVIDKDKRNQCRYCRLKKCFRAGMKKEA 139
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFNR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>gi|281345393|gb|EFB20977.1| hypothetical protein PANDA_000333 [Ailuropoda melanoleuca]
Length = 782
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 436 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 491
Query: 65 N 65
N
Sbjct: 492 N 492
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 468 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 496
>gi|222431981|gb|ACM50917.1| HNF4alpha11 [Rattus norvegicus]
Length = 413
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|198472026|ref|XP_001355813.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
gi|198139573|gb|EAL32872.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
Length = 686
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 152 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFSR----NCVVDKDKRNQCRYCRLRKCFK 206
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 207 AGMKKEAVQNERDRI 221
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 186 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 213
>gi|51120|emb|CAA31739.1| unnamed protein product [Mus musculus]
gi|148678115|gb|EDL10062.1| nuclear receptor subfamily 3, group C, member 1, isoform CRA_b [Mus
musculus]
Length = 756
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 439 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 494
Query: 65 N 65
N
Sbjct: 495 N 495
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 471 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 499
>gi|392886284|ref|NP_001122482.2| Protein UNC-55, isoform a [Caenorhabditis elegans]
gi|148613159|gb|ABQ96204.1| UNC-55a isoform [Caenorhabditis elegans]
gi|222350618|emb|CAP16277.2| Protein UNC-55, isoform a [Caenorhabditis elegans]
Length = 370
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R I R+ C+A T C +D HRNQCQ CRL KC+ MG
Sbjct: 31 KHYGQFSCEGCKSFFKRSI----RRSLSYTCRA-TKNCAIDVQHRNQCQYCRLTKCIRMG 85
Query: 64 MNKD 67
M K+
Sbjct: 86 MRKE 89
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
K S+ + T C +D HRNQCQ CRL KC+ MGM K+G+
Sbjct: 45 FKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCIRMGMRKEGR 91
>gi|281348540|gb|EFB24124.1| hypothetical protein PANDA_019943 [Ailuropoda melanoleuca]
Length = 446
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|348588691|ref|XP_003480098.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cavia porcellus]
Length = 455
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|126321023|ref|XP_001367478.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Monodelphis
domestica]
Length = 455
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM ++ Q+ ++ +
Sbjct: 122 AGMKREAVQNERDRI 136
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM ++
Sbjct: 100 QCVVDKDKRNQCRYCRLKKCFRAGMKREA 128
>gi|347800621|ref|NP_001025747.2| hepatic nuclear factor 4beta [Gallus gallus]
Length = 468
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C++DK RNQC+ CRLKKC
Sbjct: 78 TGKHYGASSCDGCK-GFFRRSVRKNHVYSCRFSR----QCVIDKDKRNQCRYCRLKKCFR 132
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 133 AGMKKEAVQNERDRI 147
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRLKKC GM K+
Sbjct: 111 QCVIDKDKRNQCRYCRLKKCFRAGMKKEA 139
>gi|344273185|ref|XP_003408404.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Loxodonta
africana]
Length = 455
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G C+ G R V K H C+ + C+VDK RNQC+ CRL+KC
Sbjct: 129 TGKHYGAASCDGCK-GFFRRSVRKNHLYTCRFSR----NCVVDKDKRNQCRYCRLRKCFK 183
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 184 AGMKKEAVQNERDRI 198
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 163 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 190
>gi|355750277|gb|EHH54615.1| hypothetical protein EGM_15494 [Macaca fascicularis]
Length = 778
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 432 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 487
Query: 65 N 65
N
Sbjct: 488 N 488
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 464 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 492
>gi|341881950|gb|EGT37885.1| hypothetical protein CAEBREN_28641 [Caenorhabditis brenneri]
Length = 512
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74
+C+ G G C V K HRN C++CRLKKC +GMN D Q+ ++
Sbjct: 86 SCRFG-GDCPVVKEHRNVCRSCRLKKCFEVGMNPDSVQNERD 126
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN C++CRLKKC +GMN D
Sbjct: 93 CPVVKEHRNVCRSCRLKKCFEVGMNPD 119
>gi|195443458|ref|XP_002069434.1| GK18664 [Drosophila willistoni]
gi|194165519|gb|EDW80420.1| GK18664 [Drosophila willistoni]
Length = 691
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 137 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFSR----NCVVDKDKRNQCRYCRLRKCFK 191
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 192 AGMKKEAVQNERDRI 206
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 171 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 198
>gi|222431987|gb|ACM50920.1| HNF4alpha11 [Mus musculus]
Length = 413
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 43 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 97
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 98 AGMKKEAVQNERDRI 112
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 76 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 104
>gi|291388149|ref|XP_002710691.1| PREDICTED: hepatocyte nuclear factor 4, gamma [Oryctolagus
cuniculus]
Length = 455
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 247 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 301
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 302 AGMKKEAVQNERDRI 316
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 281 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 308
>gi|350587737|ref|XP_003357050.2| PREDICTED: mineralocorticoid receptor-like [Sus scrofa]
Length = 837
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C++ C +D+ HRNQCQ CRLKKCL +G
Sbjct: 73 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRSNRD-CPIDQHHRNQCQYCRLKKCLKVG 127
Query: 64 MNKD 67
M ++
Sbjct: 128 MRRE 131
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 105 CPIDQHHRNQCQYCRLKKCLKVGMRRE 131
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRL KC+ +G
Sbjct: 89 KHYGQYTCEGCKSFFKRSV----RRNLSYTCR-GNRNCPIDQHHRNQCQYCRLNKCVKIG 143
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 144 MRREAVQ 150
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRL KC+ +GM ++
Sbjct: 121 CPIDQHHRNQCQYCRLNKCVKIGMRREA 148
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 87 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 141
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 142 MRREAVQ 148
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 119 CPIDQHHRNQCQYCRLKKCLKVGMRREA 146
>gi|158299692|ref|XP_319750.4| AGAP009002-PA [Anopheles gambiae str. PEST]
gi|157013639|gb|EAA14853.4| AGAP009002-PA [Anopheles gambiae str. PEST]
Length = 639
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 75 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 103
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 75 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 102
>gi|444908226|dbj|BAM78288.1| mineralocorticoid receptor [Alligator mississippiensis]
Length = 985
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 615 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 669
Query: 65 N 65
N
Sbjct: 670 N 670
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 646 CIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N +C+ +C++DK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFRRSV----RKNHVYSCRFNR-QCVIDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRL+KC GM K+
Sbjct: 100 QCVIDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|338728283|ref|XP_001490847.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Equus
caballus]
Length = 446
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|327274009|ref|XP_003221771.1| PREDICTED: mineralocorticoid receptor-like, partial [Anolis
carolinensis]
Length = 990
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 625 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 679
Query: 65 N 65
N
Sbjct: 680 N 680
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 656 CIIDKIRRKNCPACRLQKCLQAGMN 680
>gi|291401145|ref|XP_002716957.1| PREDICTED: nuclear receptor subfamily 3, group C, member 2
[Oryctolagus cuniculus]
Length = 982
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|62087692|dbj|BAD92293.1| nuclear receptor subfamily 3, group C, member 2 variant [Homo
sapiens]
Length = 853
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 483 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 537
Query: 65 N 65
N
Sbjct: 538 N 538
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 514 CIIDKIRRKNCPACRLQKCLQAGMN 538
>gi|2500913|sp|Q29131.1|MCR_TUPGB RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|1644386|emb|CAA99376.1| mineralocorticoid receptor [Tupaia belangeri]
Length = 977
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 667
Query: 65 N 65
N
Sbjct: 668 N 668
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 644 CIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+ C+++K +RN+CQ CRL++C+ +G
Sbjct: 162 RHYGAVTCEGCKGFFKRSI----RKNLVYTCR-GSKDCVINKHYRNRCQYCRLQRCIALG 216
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 217 MKQDSVQ 223
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 23/27 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K +RN+CQ CRL++C+ +GM +D
Sbjct: 194 CVINKHYRNRCQYCRLQRCIALGMKQD 220
>gi|268573140|ref|XP_002641547.1| C. briggsae CBR-NHR-239 protein [Caenorhabditis briggsae]
Length = 192
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C +R + +N C AG RC+VDK RN C ACRL KC +
Sbjct: 21 RHYGVWACDGCSCFFKRSV----RKNIIYTCIAGNWRCVVDKGRRNWCPACRLAKCTKLN 76
Query: 64 MNKDDAQH 71
MN+ Q+
Sbjct: 77 MNRLAVQN 84
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNK 115
RC+VDK RN C ACRL KC + MN+
Sbjct: 52 WRCVVDKGRRNWCPACRLAKCTKLNMNR 79
>gi|355691706|gb|EHH26891.1| hypothetical protein EGK_16971 [Macaca mulatta]
Length = 778
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 432 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 487
Query: 65 N 65
N
Sbjct: 488 N 488
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 464 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 492
>gi|344308765|ref|XP_003423047.1| PREDICTED: hypothetical protein LOC100674208 [Loxodonta africana]
Length = 1318
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
C++DK RN+CQ CR +KCL MGM ++G+
Sbjct: 734 CLIDKRQRNRCQYCRYQKCLAMGMKREGR 762
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C++DK RN+CQ CR +KCL MGM ++
Sbjct: 734 CLIDKRQRNRCQYCRYQKCLAMGMKRE 760
>gi|308495095|ref|XP_003109736.1| CRE-NHR-40 protein [Caenorhabditis remanei]
gi|308245926|gb|EFO89878.1| CRE-NHR-40 protein [Caenorhabditis remanei]
Length = 451
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K Q CQ TG C+V K+ R C++CRLKKC +MGM+ QH +
Sbjct: 51 CKTFFRRALVNK----QTFTCQF-TGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDR 105
Query: 74 NSLLY 78
+ + Y
Sbjct: 106 DKIRY 110
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C+V K+ R C++CRLKKC +MGM+
Sbjct: 73 CVVGKSVRCVCRSCRLKKCFDMGMD 97
>gi|443721770|gb|ELU10950.1| hypothetical protein CAPTEDRAFT_222512 [Capitella teleta]
Length = 650
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ C+ +R I KA R QC GRCIV+ +RN+C+ACR ++C+++GM
Sbjct: 24 HYGVATCEGCKGFFKRSI-PKAERYQC----FFGGRCIVNPQNRNRCKACRFQRCVSVGM 78
Query: 65 NKD 67
+ D
Sbjct: 79 SID 81
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
RCIV+ +RN+C+ACR ++C+++GM+ D M
Sbjct: 54 RCIVNPQNRNRCKACRFQRCVSVGMSIDAVKM 85
>gi|45387535|ref|NP_991109.1| hepatic nuclear factor 4, beta [Danio rerio]
gi|41351199|gb|AAH65657.1| Hepatic nuclear factor 4, beta [Danio rerio]
Length = 465
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 71 TGKHYGASSCDGCK-GFFRRSVRKNHAYTCRFSR----QCVVDKDKRNQCRYCRLRKCFR 125
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 126 AGMRKEAVQNERDRI 140
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 104 QCVVDKDKRNQCRYCRLRKCFRAGMRKEA 132
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + RN AC C + KA+RNQCQ CRL+KC +G
Sbjct: 39 RHYGVISCEGCKGFFKRSV----RRNMKYACTCSANACKITKANRNQCQFCRLQKCFKVG 94
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 95 MRKEAVQ 101
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C + KA+RNQCQ CRL+KC +GM K+
Sbjct: 72 CKITKANRNQCQFCRLQKCFKVGMRKEA 99
>gi|345491163|ref|XP_001607668.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nasonia
vitripennis]
Length = 343
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R C AG G C++DKA RN C CRLKKC + MN Q
Sbjct: 41 RGVLYTCIAGNGSCVIDKARRNWCPHCRLKKCFAVSMNTAAVQE 84
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C++DKA RN C CRLKKC + MN
Sbjct: 54 CVIDKARRNWCPHCRLKKCFAVSMN 78
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKD 67
M ++
Sbjct: 144 MRRE 147
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRRE 147
>gi|47223458|emb|CAF97945.1| unnamed protein product [Tetraodon nigroviridis]
Length = 431
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K H C+ + +CIVDK RNQC+ CRL KC
Sbjct: 68 TGKHYGASSCDGCKGFFRRSI-RKGHVYTCRFSR----QCIVDKDKRNQCRFCRLNKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL KC GM K+
Sbjct: 101 QCIVDKDKRNQCRFCRLNKCFRAGMKKEA 129
>gi|359321411|ref|XP_003639585.1| PREDICTED: mineralocorticoid receptor [Canis lupus familiaris]
Length = 973
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 611 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 665
Query: 65 N 65
N
Sbjct: 666 N 666
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 642 CIIDKIRRKNCPACRLQKCLQAGMN 666
>gi|354477080|ref|XP_003500750.1| PREDICTED: mineralocorticoid receptor [Cricetulus griseus]
Length = 980
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKD 67
M K+
Sbjct: 121 MRKE 124
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>gi|115529242|ref|NP_001070158.1| mineralocorticoid receptor [Taeniopygia guttata]
gi|108864762|gb|ABG22617.1| nuclear receptor subfamily 3 group C member 2 [Taeniopygia guttata]
Length = 981
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 616 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 670
Query: 65 N 65
N
Sbjct: 671 N 671
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 647 CIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|345793143|ref|XP_003433716.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Canis
lupus familiaris]
Length = 408
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 20 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 74
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 75 AGMKKEAVQNERDRI 89
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 53 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 81
>gi|194760751|ref|XP_001962596.1| GF14359 [Drosophila ananassae]
gi|190616293|gb|EDV31817.1| GF14359 [Drosophila ananassae]
Length = 735
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 180 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFSR----NCVVDKDKRNQCRYCRLRKCFK 234
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 235 AGMKKEAVQNERDRI 249
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 214 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 241
>gi|148228957|ref|NP_001081539.1| hepatocyte nuclear factor 4-beta [Xenopus laevis]
gi|125859019|gb|AAI29598.1| LOC397902 protein [Xenopus laevis]
Length = 455
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N AC+ + +CIVDK RNQC+ CRL+KC
Sbjct: 67 TGKHYGASSCDGCKGFFLRSV----RKNHVYACRF-SRQCIVDKDKRNQCRYCRLRKCFR 121
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 122 AGMKKEAVQNERDRI 136
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL+KC GM K+
Sbjct: 100 QCIVDKDKRNQCRYCRLRKCFRAGMKKEA 128
>gi|426235662|ref|XP_004011799.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Ovis aries]
Length = 446
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|340719219|ref|XP_003398053.1| PREDICTED: hypothetical protein LOC100648906 isoform 2 [Bombus
terrestris]
Length = 428
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 45 CKNG-GVCVINKKNRTSCKACRLRKCLVVGMSKSGSRYGRRSNWFKIHC 92
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 51 CVINKKNRTSCKACRLRKCLVVGMSKSG 78
>gi|126304932|ref|XP_001375141.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Monodelphis
domestica]
Length = 459
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N +C+ +C++DK RNQC+ CRL+KC
Sbjct: 68 TGKHYGASSCDGCKGFFRRSV----RKNHVYSCRFNR-QCVIDKDKRNQCRYCRLRKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRL+KC GM K+
Sbjct: 101 QCVIDKDKRNQCRYCRLRKCFRAGMKKEA 129
>gi|119625413|gb|EAX05008.1| nuclear receptor subfamily 3, group C, member 2 [Homo sapiens]
gi|306921281|dbj|BAJ17720.1| nuclear receptor subfamily 3, group C, member 2 [synthetic
construct]
Length = 984
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|110759896|ref|XP_001120662.1| PREDICTED: hypothetical protein LOC724765 [Apis mellifera]
Length = 422
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 42 CKNG-GVCVINKKNRTACKACRLRKCLMVGMSKSGSRYGRRSNWFKIHC 89
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 48 CVINKKNRTACKACRLRKCLMVGMSKSG 75
>gi|340719217|ref|XP_003398052.1| PREDICTED: hypothetical protein LOC100648906 isoform 1 [Bombus
terrestris]
Length = 425
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 42 CKNG-GVCVINKKNRTSCKACRLRKCLVVGMSKSGSRYGRRSNWFKIHC 89
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 48 CVINKKNRTSCKACRLRKCLVVGMSKSG 75
>gi|126885|sp|P08235.1|MCR_HUMAN RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|307166|gb|AAA59571.1| mineralocorticoid receptor [Homo sapiens]
Length = 984
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|395855283|ref|XP_003800096.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Otolemur garnettii]
Length = 446
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSI-RKSHIYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>gi|218156204|dbj|BAH03334.1| retinoic acid receptor 2 [Lethenteron camtschaticum]
Length = 479
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C G C+++K RN+CQ CRL+KC +GM
Sbjct: 102 HYGVSSCEGCKGFFRRSI----QKNMVYTCPRDKG-CVINKVTRNRCQYCRLQKCFEVGM 156
Query: 65 NKDDAQHLKN 74
+K+ ++ +N
Sbjct: 157 SKESVRNDRN 166
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K RN+CQ CRL+KC +GM+K+
Sbjct: 133 CVINKVTRNRCQYCRLQKCFEVGMSKE 159
>gi|242019629|ref|XP_002430262.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212515369|gb|EEB17524.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 366
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 40 GECVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHC 83
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 36 CKNNGE--CVINKKNRTACKACRLRKCLLVGMSKSG 69
>gi|449472225|ref|XP_002196349.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Taeniopygia
guttata]
Length = 468
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N +C+ +C++DK RNQC+ CRLKKC
Sbjct: 78 TGKHYGASSCDGCKGFFRRSV----RKNHVYSCRFNR-QCVIDKDKRNQCRYCRLKKCFR 132
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 133 AGMKKEAVQNERDRI 147
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRLKKC GM K+
Sbjct: 111 QCVIDKDKRNQCRYCRLKKCFRAGMKKEA 139
>gi|417405505|gb|JAA49462.1| Putative mineralocorticoid receptor [Desmodus rotundus]
Length = 980
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 612 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 666
Query: 65 N 65
N
Sbjct: 667 N 667
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 643 CIIDKIRRKNCPACRLQKCLQAGMN 667
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
RN C+ G C +D+ HRNQCQ CRLKKCL MGM ++ Q
Sbjct: 25 RNLTYTCR-GNRTCPIDQHHRNQCQYCRLKKCLKMGMRREAVQ 66
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 37 CPIDQHHRNQCQYCRLKKCLKMGMRREA 64
>gi|158508572|ref|NP_000892.2| mineralocorticoid receptor isoform 1 [Homo sapiens]
gi|167882809|gb|ACA05923.1| nuclear receptor subfamily 3, group C, member 2 variant 1 [Homo
sapiens]
gi|239740366|gb|ACS13715.1| mineralocorticoid receptor [Homo sapiens]
Length = 984
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|126331313|ref|XP_001366818.1| PREDICTED: mineralocorticoid receptor-like [Monodelphis domestica]
Length = 993
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 623 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 677
Query: 65 N 65
N
Sbjct: 678 N 678
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 654 CIIDKIRRKNCPACRLQKCLQAGMN 678
>gi|114596325|ref|XP_001150516.1| PREDICTED: mineralocorticoid receptor isoform 3 [Pan troglodytes]
gi|397489802|ref|XP_003815905.1| PREDICTED: mineralocorticoid receptor isoform 1 [Pan paniscus]
Length = 984
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|410956759|ref|XP_003985005.1| PREDICTED: mineralocorticoid receptor isoform 1 [Felis catus]
Length = 983
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|311115255|gb|ADP69098.1| BCL6 corepressor/retinoic acid receptor alpha fusion protein [Homo
sapiens]
Length = 1931
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 1568 HYGVSACEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 1622
Query: 65 NKDDAQHLKN 74
+K+ ++ +N
Sbjct: 1623 SKESVRNDRN 1632
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 1599 CIINKVTRNRCQYCRLQKCFEVGMSKE 1625
>gi|301763180|ref|XP_002917011.1| PREDICTED: mineralocorticoid receptor-like isoform 1 [Ailuropoda
melanoleuca]
Length = 974
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 38 TGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+ CIVD RNQCQACR KKCL++ M +D QH
Sbjct: 48 SNSCIVDVTRRNQCQACRFKKCLSVNMKRDAVQH 81
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVD RNQCQACR KKCL++ M +D
Sbjct: 51 CIVDVTRRNQCQACRFKKCLSVNMKRDA 78
>gi|30266124|gb|AAP21572.1| knirps [Drosophila novamexicana]
Length = 122
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|30038109|gb|AAP12718.1| knirps [Drosophila americana]
Length = 122
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>gi|194858004|ref|XP_001969081.1| GG25225 [Drosophila erecta]
gi|190660948|gb|EDV58140.1| GG25225 [Drosophila erecta]
Length = 702
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 307 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 335
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 307 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 334
>gi|226404|prf||1510302C retinoic acid receptor gamma
Length = 458
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HTGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|328710767|ref|XP_001952732.2| PREDICTED: ecdysone-induced protein 78C-like [Acyrthosiphon pisum]
Length = 570
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+T C+ R I + Q + G+C+V + +RN+CQ CR KKCL +GM
Sbjct: 162 HYGVTSCEGCKGFFRRSI-----QKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLTVGM 216
Query: 65 NKDDAQH 71
++D ++
Sbjct: 217 SRDSVRY 223
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
E+ C L + +C+V + +RN+CQ CR KKCL +GM++D
Sbjct: 184 EYRC--LRDGKCLVIRLNRNRCQYCRFKKCLTVGMSRD 219
>gi|119607446|gb|EAW87040.1| hepatocyte nuclear factor 4, gamma, isoform CRA_a [Homo sapiens]
Length = 445
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 57 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 111
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 112 AGMKKEAVQNERDRI 126
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 90 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 118
>gi|52545866|emb|CAH56277.1| hypothetical protein [Homo sapiens]
Length = 636
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 94 HYGVSACEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 148
Query: 65 NKDDAQHLKN 74
+K+ ++ +N
Sbjct: 149 SKESVRNDRN 158
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 125 CIINKVTRNRCQYCRLQKCFEVGMSKE 151
>gi|392898442|ref|NP_500190.3| Protein NHR-236 [Caenorhabditis elegans]
gi|351059122|emb|CCD66972.1| Protein NHR-236 [Caenorhabditis elegans]
Length = 283
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R I RN +C+ +G C++D RNQCQACR +KC+ +
Sbjct: 23 RHYGVLSCDGCRGFFKRSI----RRNLRYSCKE-SGDCVIDVTRRNQCQACRFQKCITVA 77
Query: 64 MNKDDAQH 71
MN+ QH
Sbjct: 78 MNRHAVQH 85
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNK 115
C++D RNQCQACR +KC+ + MN+
Sbjct: 55 CVIDVTRRNQCQACRFQKCITVAMNR 80
>gi|410208336|gb|JAA01387.1| nuclear receptor subfamily 3, group C, member 2 [Pan troglodytes]
Length = 984
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|115583654|ref|NP_004124.4| hepatocyte nuclear factor 4-gamma [Homo sapiens]
gi|190691697|gb|ACE87623.1| hepatocyte nuclear factor 4, gamma protein [synthetic construct]
gi|325495495|gb|ADZ17353.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 445
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 57 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 111
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 112 AGMKKEAVQNERDRI 126
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 90 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 118
>gi|441619249|ref|XP_003257837.2| PREDICTED: mineralocorticoid receptor isoform 1 [Nomascus
leucogenys]
Length = 996
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 626 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 680
Query: 65 N 65
N
Sbjct: 681 N 681
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 657 CIIDKIRRKNCPACRLQKCLQAGMN 681
>gi|30315970|sp|Q9N0W8.1|MCR_SAISC RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|7533169|gb|AAF63382.1|AF245224_1 mineralocorticoid receptor [Saimiri sciureus]
Length = 982
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 667
Query: 65 N 65
N
Sbjct: 668 N 668
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 644 CIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|403272367|ref|XP_003928037.1| PREDICTED: mineralocorticoid receptor isoform 1 [Saimiri
boliviensis boliviensis]
gi|403272369|ref|XP_003928038.1| PREDICTED: mineralocorticoid receptor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 982
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 667
Query: 65 N 65
N
Sbjct: 668 N 668
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 644 CIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|148224443|ref|NP_001084074.1| mineralocorticoid receptor [Xenopus laevis]
gi|51703904|gb|AAH81082.1| Nr3c2 protein [Xenopus laevis]
Length = 979
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 611 HYGVVTCGSCKVFFKRA-VEGQHSYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 665
Query: 65 N 65
N
Sbjct: 666 N 666
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 642 CIIDKIRRKNCPACRLQKCLQAGMN 666
>gi|426246963|ref|XP_004017256.1| PREDICTED: mineralocorticoid receptor isoform 2 [Ovis aries]
Length = 869
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 616 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 670
Query: 65 N 65
N
Sbjct: 671 N 671
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 647 CIIDKIRRKNCPACRLQKCLQAGMNLGG 674
>gi|110810430|sp|Q4JM28.1|MCR_SAIBB RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|68161554|gb|AAY87140.1| mineralocorticoid receptor [Saimiri boliviensis]
Length = 982
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 667
Query: 65 N 65
N
Sbjct: 668 N 668
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 644 CIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|395542565|ref|XP_003773197.1| PREDICTED: mineralocorticoid receptor isoform 1 [Sarcophilus
harrisii]
Length = 992
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 622 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 676
Query: 65 N 65
N
Sbjct: 677 N 677
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 653 CIIDKIRRKNCPACRLQKCLQAGMN 677
>gi|344291739|ref|XP_003417589.1| PREDICTED: LOW QUALITY PROTEIN: mineralocorticoid receptor-like
[Loxodonta africana]
Length = 980
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 610 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 664
Query: 65 N 65
N
Sbjct: 665 N 665
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 641 CIIDKIRRKNCPACRLQKCLQAGMN 665
>gi|228291|prf||1802363A glucocorticoid receptor
Length = 778
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + + H C AG CI+DK R C ACR +KCL GM
Sbjct: 432 HYGVLTCGSCKVFFKRAVEGRQHNYLC----AGRNDCIIDKIRRKNCPACRYRKCLQAGM 487
Query: 65 N 65
N
Sbjct: 488 N 488
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 464 CIIDKIRRKNCPACRYRKCLQAGMNLEAR 492
>gi|395541032|ref|XP_003772452.1| PREDICTED: retinoic acid receptor gamma [Sarcophilus harrisii]
Length = 463
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 106 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 160
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 161 SKEAVRNDRNKKKKEVKEEGPPDSYELS-PQLEELIAKVSKAHQETFPSLCQLGK 214
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 137 CIINKVTRNRCQYCRLQKCFEVGMSKEA 164
>gi|350408785|ref|XP_003488513.1| PREDICTED: hypothetical protein LOC100741739 [Bombus impatiens]
Length = 436
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 45 CKNG-GVCVINKKNRTSCKACRLRKCLVVGMSKSGSRYGRRSNWFKIHC 92
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 51 CVINKKNRTSCKACRLRKCLVVGMSKSG 78
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I R+ +C+ G C VD +RNQCQ CRLKKCL +G
Sbjct: 42 KHYGVYTCEGCKSFFKRSI----RRSLSYSCR-GVRNCPVDIQNRNQCQYCRLKKCLKVG 96
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 97 MRKEAVQ 103
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD +RNQCQ CRLKKCL +GM K+
Sbjct: 74 CPVDIQNRNQCQYCRLKKCLKVGMRKEA 101
>gi|357627930|gb|EHJ77448.1| hormone receptor 3C [Danaus plexippus]
Length = 698
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 145 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 172
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 145 CVVDRVNRNRCQYCRLQKCLKLGMSRD 171
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
RN C+ G C +D+ HRNQCQ CRLKKCL MGM ++ Q
Sbjct: 50 RNLTYTCR-GNRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQ 91
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 62 CPIDQHHRNQCQYCRLKKCLKMGMRREA 89
>gi|17541658|ref|NP_501775.1| Protein NHR-4 [Caenorhabditis elegans]
gi|10720135|sp|O45436.2|NHR4_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-4
gi|4139072|gb|AAD03681.1| nuclear receptor NHR-4 [Caenorhabditis elegans]
gi|6434291|emb|CAB03044.2| Protein NHR-4 [Caenorhabditis elegans]
Length = 492
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 33 ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74
+C+ G G C V K HRN C++CRLKKC +GMN D Q+ ++
Sbjct: 85 SCRFG-GDCPVVKEHRNVCRSCRLKKCFEVGMNPDSVQNERD 125
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C V K HRN C++CRLKKC +GMN D
Sbjct: 92 CPVVKEHRNVCRSCRLKKCFEVGMNPD 118
>gi|94717657|sp|Q3YC04.1|MCR_AOTNA RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|72537229|gb|AAZ73615.1| mineralocorticoid receptor [Aotus nancymaae]
Length = 984
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|194208405|ref|XP_001501712.2| PREDICTED: mineralocorticoid receptor isoform 1 [Equus caballus]
Length = 984
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|71995626|ref|NP_001024874.1| Protein NHR-40, isoform c [Caenorhabditis elegans]
gi|27808670|sp|Q22127.3|NHR40_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-40
gi|351063623|emb|CCD71835.1| Protein NHR-40, isoform c [Caenorhabditis elegans]
Length = 455
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K Q CQ +G C+V K+ R C++CRLKKC +MGM+ QH +
Sbjct: 51 CKTFFRRALVNK----QTFTCQF-SGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDR 105
Query: 74 NSLLY 78
+ + Y
Sbjct: 106 DKIRY 110
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C+V K+ R C++CRLKKC +MGM+
Sbjct: 73 CVVGKSVRCVCRSCRLKKCFDMGMD 97
>gi|28573920|ref|NP_788301.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
gi|28380972|gb|AAO41453.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
Length = 694
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 301 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 329
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 301 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 328
>gi|442623145|ref|NP_001260854.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
gi|440214256|gb|AGB93387.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
Length = 529
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|195582120|ref|XP_002080876.1| GD26001 [Drosophila simulans]
gi|194192885|gb|EDX06461.1| GD26001 [Drosophila simulans]
Length = 627
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 477 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 505
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 477 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 504
>gi|31324673|gb|AAP48590.1| mineralocorticoid receptor [Callithrix jacchus]
Length = 983
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 613 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 667
Query: 65 N 65
N
Sbjct: 668 N 668
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 644 CIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|391338822|ref|XP_003743754.1| PREDICTED: uncharacterized protein LOC100907031 [Metaseiulus
occidentalis]
Length = 388
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI++K +R C++CRLKKCL +GM+K +++ + S ++ C
Sbjct: 81 GQCIINKKNRTSCKSCRLKKCLLVGMSKSGSRYGRRSNWFKIHC 124
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI++K +R C++CRLKKCL +GM+K G
Sbjct: 82 QCIINKKNRTSCKSCRLKKCLLVGMSKSG 110
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G++ C+ +R I RN C+ + +CIVD + RNQCQACR ++CL +
Sbjct: 21 RHYGVSSCDGCRGFFKRSI----RRNLDYMCKE-SNQCIVDVSRRNQCQACRFRRCLEVK 75
Query: 64 MNKDDAQH 71
M +D QH
Sbjct: 76 MKRDAVQH 83
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVD + RNQCQACR ++CL + M +D
Sbjct: 53 CIVDVSRRNQCQACRFRRCLEVKMKRDA 80
>gi|24644582|ref|NP_649647.1| hormone receptor 83 [Drosophila melanogaster]
gi|7298928|gb|AAF54133.1| hormone receptor 83 [Drosophila melanogaster]
gi|336020395|gb|AEH77288.1| RT11831p [Drosophila melanogaster]
Length = 278
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R AC A G C+VDKA RN C +CR ++CL +GMN Q
Sbjct: 37 RGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAVGMNAAAVQE 80
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMN 114
+AC LV C+VDKA RN C +CR ++CL +GMN
Sbjct: 40 SYACIALVG-NCVVDKARRNWCPSCRFQRCLAVGMN 74
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+VDK RN+CQ CR +KCL MGM ++ +H+K
Sbjct: 132 CLVDKRQRNRCQYCRYQKCLAMGMKREVIKHVK 164
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+VDK RN+CQ CR +KCL MGM ++
Sbjct: 132 CLVDKRQRNRCQYCRYQKCLAMGMKRE 158
>gi|161453|gb|AAA30041.1| COUP transcription factor, partial [Strongylocentrotus purpuratus]
Length = 381
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
RN +C+A C +D+ HRNQCQ CRLKKCL MGM ++ Q
Sbjct: 171 RNLTYSCRANRN-CPIDQHHRNQCQYCRLKKCLKMGMRREAVQ 212
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 183 CPIDQHHRNQCQYCRLKKCLKMGMRREA 210
>gi|348582294|ref|XP_003476911.1| PREDICTED: mineralocorticoid receptor-like [Cavia porcellus]
Length = 980
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 612 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 666
Query: 65 N 65
N
Sbjct: 667 N 667
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 643 CIIDKIRRKNCPACRLQKCLQAGMN 667
>gi|308460055|ref|XP_003092336.1| CRE-NHR-23 protein [Caenorhabditis remanei]
gi|308253567|gb|EFO97519.1| CRE-NHR-23 protein [Caenorhabditis remanei]
Length = 597
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVD+ +RN+CQ CRLKKC+ +GM++D
Sbjct: 181 CIVDRVNRNRCQYCRLKKCIELGMSRDA 208
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
CIVD+ +RN+CQ CRLKKC+ +GM++D
Sbjct: 181 CIVDRVNRNRCQYCRLKKCIELGMSRD 207
>gi|195127658|ref|XP_002008285.1| GI11900 [Drosophila mojavensis]
gi|193919894|gb|EDW18761.1| GI11900 [Drosophila mojavensis]
Length = 671
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>gi|157123672|ref|XP_001660273.1| expressed protein (HR3) [Aedes aegypti]
gi|108874313|gb|EAT38538.1| AAEL009588-PA [Aedes aegypti]
Length = 468
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 73 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 101
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 73 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 100
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDD 68
+ RN C+A C +D+ HRNQCQ CRLKKCL +GM ++D
Sbjct: 2 RVRRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVGMRRED 44
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
C +D+ HRNQCQ CRLKKCL +GM ++ +++
Sbjct: 17 CPIDQHHRNQCQYCRLKKCLKVGMRREDRAV 47
>gi|7110506|gb|AAF36970.1|AF230281_1 nuclear receptor 3 [Aedes aegypti]
Length = 468
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 73 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 101
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 73 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 100
>gi|381413307|gb|AFG28651.1| molt-regulating transcription factor, partial [Chilo infuscatellus]
Length = 418
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 13 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 40
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 13 CVVDRVNRNRCQYCRLQKCLKLGMSRD 39
>gi|301607256|ref|XP_002933229.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 420
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76
+C+VDK RNQC+ CRLKKC GM K+ Q+ ++ +
Sbjct: 57 QCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRI 93
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 57 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 85
>gi|156380693|ref|XP_001631902.1| predicted protein [Nematostella vectensis]
gi|156218950|gb|EDO39839.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CIVDK RN+CQ CR+ KCL +GM K GK
Sbjct: 51 CIVDKVLRNRCQKCRMDKCLAVGMQKSGK 79
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + RN C CIVDK RN+CQ CR+ KCL +G
Sbjct: 19 RHYGVMTCEGCKGFFKRSV----RRNMVYHCMFRE-TCIVDKVLRNRCQKCRMDKCLAVG 73
Query: 64 MNK 66
M K
Sbjct: 74 MQK 76
>gi|296480539|tpg|DAA22654.1| TPA: hepatocyte nuclear factor 4, gamma [Bos taurus]
Length = 425
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 37 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 91
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 92 AGMKKEAVQNERDRI 106
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 70 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 98
>gi|195172187|ref|XP_002026880.1| GL12764 [Drosophila persimilis]
gi|194112648|gb|EDW34691.1| GL12764 [Drosophila persimilis]
Length = 707
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 31 CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ C+ G CI++K +R +ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 51 CEGCK-NNGECIINKKNRTVGKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 101
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R +ACRLKKCL +GM+K G
Sbjct: 60 CIINKKNRTVGKACRLKKCLMVGMSKSG 87
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
RN +C+ G C +D+ HRNQCQ CRLKKCL MGM ++ Q
Sbjct: 11 RNLNYSCR-GNRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQ 52
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 23 CPIDQHHRNQCQYCRLKKCLKMGMRREA 50
>gi|291238706|ref|XP_002739270.1| PREDICTED: nuclear receptor nhr-7A-like [Saccoglossus kowalevskii]
Length = 446
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ C+ RC+ R + C G G+C VD+ RN+C +CR KKC+ +GM
Sbjct: 50 HYGIISCEGCKGFFRRCL----RRQKEYVCIRG-GKCEVDRTKRNRCPSCRYKKCIELGM 104
Query: 65 NKD 67
+K+
Sbjct: 105 SKE 107
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C VD+ RN+C +CR KKC+ +GM+K+
Sbjct: 80 KCEVDRTKRNRCPSCRYKKCIELGMSKEA 108
>gi|170057318|ref|XP_001864431.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876753|gb|EDS40136.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 440
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 31 GECVINKKNRTACKACRLRKCLYVGMSKSGSRYGRRSNWFKIHC 74
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 33 CVINKKNRTACKACRLRKCLYVGMSKSG 60
>gi|297293494|ref|XP_001099855.2| PREDICTED: mineralocorticoid receptor isoform 4 [Macaca mulatta]
Length = 1040
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|268529532|ref|XP_002629892.1| C. briggsae CBR-NHR-23 protein [Caenorhabditis briggsae]
Length = 597
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CIVD+ +RN+CQ CRLKKC+ +GM++D
Sbjct: 209 CIVDRVNRNRCQYCRLKKCIELGMSRDA 236
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
CIVD+ +RN+CQ CRLKKC+ +GM++D
Sbjct: 209 CIVDRVNRNRCQYCRLKKCIELGMSRD 235
>gi|431921630|gb|ELK18982.1| Retinoic acid receptor gamma, partial [Pteropus alecto]
Length = 534
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 177 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 231
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 232 SKEAVRNDRNKKKKEVKEEGLLDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 285
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 208 CIINKVTRNRCQYCRLQKCFEVGMSKEA 235
>gi|189164166|gb|ACD77184.1| putative hepatocyte nuclear factor 4 nuclear hormone receptor
[Callosobruchus maculatus]
Length = 507
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G C+ R A +N C+ C+VDK RNQC+ CRL+KC
Sbjct: 91 TGKHYGAASCDGCKGFFRR----SARKNHLYTCRFNRN-CVVDKDKRNQCRYCRLRKCFK 145
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 146 AGMKKEAVQNERDRI 160
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 125 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 152
>gi|218505955|gb|ABN49269.2| IP15960p [Drosophila melanogaster]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ +R V K C+ C+ C++DK RN+CQ CR +KCL MG
Sbjct: 137 KHYGVYSCEGCKGFFKR-TVRKDLTYTCRDCK----ECLIDKRQRNRCQYCRYQKCLAMG 191
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 192 MKREAVQ 198
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + E C++DK RN+CQ CR +KCL MGM ++
Sbjct: 161 YTCRDCKE--CLIDKRQRNRCQYCRYQKCLAMGMKREA 196
>gi|170586506|ref|XP_001898020.1| Ligand-binding domain of nuclear hormone receptor family protein
[Brugia malayi]
gi|158594415|gb|EDP32999.1| Ligand-binding domain of nuclear hormone receptor family protein
[Brugia malayi]
Length = 501
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 8 MTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
+T P C+ +R + +K + C +GTG C + K RN+CQ CR +KCL GM
Sbjct: 10 LTSLPRCKGFFKRTVQNK----RVYTCVSGTGNCPMTKEQRNRCQFCRFQKCLQQGM 62
Score = 34.7 bits (78), Expect = 7.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C + K RN+CQ CR +KCL GM
Sbjct: 39 CPMTKEQRNRCQFCRFQKCLQQGM 62
>gi|4139092|gb|AAD03691.1| nuclear receptor NHR-21a [Caenorhabditis elegans]
Length = 458
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+T C+ R I +N+ AC+ G+C V K RN C++CRLK+C+ +G
Sbjct: 52 KHYGVTACNGCKGFFRRSI----WKNRTYACRY-QGKCGVAKEQRNACRSCRLKECIKVG 106
Query: 64 MNKDDAQHLKNSLLYEFACTNLVEL 88
MN Q ++ A NLV +
Sbjct: 107 MNPRAVQGDIDTASTSSASPNLVSV 131
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C V K RN C++CRLK+C+ +GMN
Sbjct: 83 KCGVAKEQRNACRSCRLKECIKVGMN 108
>gi|296279072|gb|ADH04374.1| thyroid hormone receptor beta2delta [Rattus norvegicus]
Length = 511
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
G+CI+DK RNQCQ CR KKC+ +GM D
Sbjct: 199 GKCIIDKVTRNQCQECRFKKCIYVGMATD 227
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
++ SL ++C E +CI+DK RNQCQ CR KKC+ +GM D
Sbjct: 185 IQKSLHPSYSCK--YEGKCIIDKVTRNQCQECRFKKCIYVGMATD 227
>gi|28573924|ref|NP_788303.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|386767645|ref|NP_001246236.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
gi|195475280|ref|XP_002089912.1| GE21721 [Drosophila yakuba]
gi|399369|sp|P31396.1|HR3_DROME RecName: Full=Probable nuclear hormone receptor HR3; Short=dHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|157230|gb|AAA28461.1| DHR3 [Drosophila melanogaster]
gi|7303778|gb|AAF58826.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|194176013|gb|EDW89624.1| GE21721 [Drosophila yakuba]
gi|373251236|gb|AEY64286.1| FI17818p1 [Drosophila melanogaster]
gi|383302381|gb|AFH07991.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|395834535|ref|XP_003790255.1| PREDICTED: mineralocorticoid receptor [Otolemur garnettii]
Length = 867
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMNLGG 672
>gi|17562772|ref|NP_506968.1| Protein NHR-84 [Caenorhabditis elegans]
gi|3879609|emb|CAB03299.1| Protein NHR-84 [Caenorhabditis elegans]
Length = 416
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ C A R V H+ + + Q G+C V R QC+ACRLKKC +GM
Sbjct: 39 HFGVLSCRACAAFFRRSFV---HKKEYKCRQRNVGKCDVSGNDRYQCRACRLKKCKELGM 95
Query: 65 NKDDAQHLKNS 75
++ Q +NS
Sbjct: 96 TPENVQMDRNS 106
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
E+ C +C V R QC+ACRLKKC +GM + M
Sbjct: 61 EYKCRQRNVGKCDVSGNDRYQCRACRLKKCKELGMTPENVQM 102
>gi|307170386|gb|EFN62698.1| GATA-binding factor A [Camponotus floridanus]
Length = 638
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNL 85
C G CIVDKA RN C CRLKKC ++GMN Q + + A ++L
Sbjct: 338 CTNSDGSCIVDKARRNWCPHCRLKKCFSVGMNTAAVQEERGPRVRSNALSDL 389
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMN 114
F CTN + CIVDKA RN C CRLKKC ++GMN
Sbjct: 336 FTCTN-SDGSCIVDKARRNWCPHCRLKKCFSVGMN 369
>gi|195028616|ref|XP_001987172.1| GH20117 [Drosophila grimshawi]
gi|193903172|gb|EDW02039.1| GH20117 [Drosophila grimshawi]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|161076500|ref|NP_001097256.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
gi|157400270|gb|ABV53751.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
Length = 456
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 63 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 91
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 63 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 90
>gi|148696965|gb|EDL28912.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_c [Mus
musculus]
Length = 241
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 69 AQHLKNSLLY--EFACTNLVELRCI--------VDKAHRNQCQACRLKKCLNMGMNKDG 117
AQH S L+ FA T+L L C+ +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 10 AQHPPQSQLHLPGFAGTSLGTLACVSRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEA 68
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
C +D+ HRNQCQ CRLKKC +GM K+ Q
Sbjct: 41 CQIDQHHRNQCQYCRLKKCFRVGMRKEAVQ 70
>gi|47226025|emb|CAG04399.1| unnamed protein product [Tetraodon nigroviridis]
Length = 689
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KCL +GM
Sbjct: 333 HYGVSACEGCKGFFRRSI----QKNMVYTCHR-EKNCIINKVTRNRCQYCRLQKCLEVGM 387
Query: 65 NKDDAQHLKN 74
+K+ ++ +N
Sbjct: 388 SKESVRNDRN 397
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 87 ELRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
E CI++K RN+CQ CRL+KCL +GM+K+
Sbjct: 361 EKNCIINKVTRNRCQYCRLQKCLEVGMSKE 390
>gi|393908442|gb|EJD75059.1| hypothetical protein LOAG_17726 [Loa loa]
Length = 251
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 58 KCIVDRVNRNRCQYCRLKKCLELGMSRD 85
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+CIVD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 58 KCIVDRVNRNRCQYCRLKKCLELGMSRD 85
>gi|358338345|dbj|GAA56711.1| retinoic acid receptor RXR-alpha [Clonorchis sinensis]
Length = 675
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G+ C+ +R + R Q Q G+G C VD+ R +CQACR +C+ G
Sbjct: 271 RHYGVVSCEGCKGFFKRTV-----RKQVQYVCRGSGDCPVDRRKRTRCQACRYDRCILKG 325
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 326 MKREAVQ 332
>gi|358333531|dbj|GAA52025.1| nuclear receptor subfamily 2 group F member 5 [Clonorchis sinensis]
Length = 972
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + R C+ GT +C +D HRNQCQ CR +KC+ G
Sbjct: 269 KHYGQHTCEGCKSFFKRSV----RRKLTYTCR-GTRQCPIDVHHRNQCQYCRFQKCVRAG 323
Query: 64 MNKDDAQH 71
M K+ Q
Sbjct: 324 MRKEAVQQ 331
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C +D HRNQCQ CR +KC+ GM K+
Sbjct: 300 QCPIDVHHRNQCQYCRFQKCVRAGMRKEA 328
>gi|125808571|ref|XP_001360799.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|195151019|ref|XP_002016447.1| GL10487 [Drosophila persimilis]
gi|54635971|gb|EAL25374.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|194110294|gb|EDW32337.1| GL10487 [Drosophila persimilis]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|115532502|ref|NP_001040766.1| Protein NHR-21, isoform e [Caenorhabditis elegans]
gi|351061914|emb|CCD69793.1| Protein NHR-21, isoform e [Caenorhabditis elegans]
Length = 450
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+T C+ R I +N+ AC+ G+C V K RN C++CRLK+C+ +G
Sbjct: 40 KHYGVTACNGCKGFFRRSI----WKNRTYACRY-QGKCGVAKEQRNACRSCRLKECIKVG 94
Query: 64 MNKDDAQHLKNSLLYEFACTNLVELRC-IVDKAHRNQCQ 101
MN Q ++ A NLV + K+ +CQ
Sbjct: 95 MNPRAVQGDIDTASTSSASPNLVSVEMHPYTKSEEVECQ 133
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C V K RN C++CRLK+C+ +GMN
Sbjct: 71 KCGVAKEQRNACRSCRLKECIKVGMN 96
>gi|7305147|ref|NP_038948.1| hepatocyte nuclear factor 4-gamma [Mus musculus]
gi|4914655|emb|CAB43724.1| hepatocyte nuclear factor 4 gamma [Mus musculus]
gi|116138605|gb|AAI25520.1| Hepatocyte nuclear factor 4, gamma [Mus musculus]
gi|148673275|gb|EDL05222.1| hepatocyte nuclear factor 4, gamma [Mus musculus]
Length = 418
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL+KC
Sbjct: 30 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFSR----QCVVDKDKRNQCRYCRLRKCFR 84
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 85 AGMKKEAVQNERDRI 99
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL+KC GM K+
Sbjct: 63 QCVVDKDKRNQCRYCRLRKCFRAGMKKEA 91
>gi|195343955|ref|XP_002038556.1| GM10889 [Drosophila sechellia]
gi|194133577|gb|EDW55093.1| GM10889 [Drosophila sechellia]
Length = 278
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R AC A G C+VDKA RN C +CR ++CL +GMN Q
Sbjct: 37 RGSSYACIALAGNCVVDKARRNWCPSCRFQRCLAVGMNAAAVQE 80
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMN 114
+AC L C+VDKA RN C +CR ++CL +GMN
Sbjct: 40 SYACIALAG-NCVVDKARRNWCPSCRFQRCLAVGMN 74
>gi|114049535|emb|CAJ90621.1| HR3 isoform A [Blattella germanica]
Length = 607
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 80 CVVDRVNRNRCQYCRLQKCLRLGMSRDA 107
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 80 CVVDRVNRNRCQYCRLQKCLRLGMSRD 106
>gi|195568717|ref|XP_002102360.1| GD19868 [Drosophila simulans]
gi|194198287|gb|EDX11863.1| GD19868 [Drosophila simulans]
Length = 278
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R AC A G C+VDKA RN C +CR ++CL +GMN Q
Sbjct: 37 RGSSYACIALAGNCVVDKARRNWCPSCRFQRCLAVGMNAAAVQE 80
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMN 114
+AC L C+VDKA RN C +CR ++CL +GMN
Sbjct: 40 SYACIALAG-NCVVDKARRNWCPSCRFQRCLAVGMN 74
>gi|20151433|gb|AAM11076.1| GH21112p [Drosophila melanogaster]
gi|220947174|gb|ACL86130.1| Hr46-PB [synthetic construct]
gi|220952516|gb|ACL88801.1| Hr46-PB [synthetic construct]
Length = 444
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 51 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 79
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 51 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 78
>gi|20563131|gb|AAM27887.1|AF263738_1 glucocorticoid receptor isoform 1 [Haplochromis burtoni]
Length = 779
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACR +KCL GM
Sbjct: 434 HYGVLTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRFRKCLMAGM 488
Query: 65 NKDDAQHLKNSL 76
N + + KN L
Sbjct: 489 NLEARKLKKNRL 500
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
CI+DK R C ACR +KCL GMN + + +
Sbjct: 465 CIIDKIRRKNCPACRFRKCLMAGMNLEARKL 495
>gi|585482|sp|Q08882.1|HR3_MANSE RecName: Full=Probable nuclear hormone receptor HR3; Short=mHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|396804|emb|CAA52654.1| MHR3 [Manduca sexta]
Length = 548
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 146 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 173
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 146 CVVDRVNRNRCQYCRLQKCLKLGMSRD 172
>gi|387966309|gb|AFK14016.1| glucocorticoid receptor 2b [Pantodon buchholzi]
Length = 752
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACR +KCL GM
Sbjct: 403 HYGVLTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRFRKCLQAGM 457
Query: 65 NKDDAQHLKNSLL 77
N + ++ K + L
Sbjct: 458 NLEARKNKKQNKL 470
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGK 118
CI+DK R C ACR +KCL GMN + +
Sbjct: 434 CIIDKIRRKNCPACRFRKCLQAGMNLEAR 462
>gi|324512722|gb|ADY45259.1| Nuclear hormone receptor family member nhr-23 [Ascaris suum]
Length = 469
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 97 CTVDRVNRNRCQFCRLKKCLELGMSRDA 124
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C VD+ +RN+CQ CRLKKCL +GM++D
Sbjct: 97 CTVDRVNRNRCQFCRLKKCLELGMSRD 123
>gi|124054331|gb|ABM89381.1| NR2E1 [Pongo pygmaeus]
Length = 29
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 24/29 (82%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
G C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 1 GGCPVDKTHRNQCRACRLKKCLEVNMNKD 29
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 3 CPVDKTHRNQCRACRLKKCLEVNMNKD 29
>gi|268530382|ref|XP_002630317.1| C. briggsae CBR-NHR-61 protein [Caenorhabditis briggsae]
Length = 410
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL +G
Sbjct: 38 KHYGVNACNGCKGFFRRSI----WKNRTYACRYG-GKCLVAKEQRNACRSCRLAQCLKVG 92
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 93 MNPRAVQ 99
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL +GMN
Sbjct: 69 KCLVAKEQRNACRSCRLAQCLKVGMN 94
>gi|340372145|ref|XP_003384605.1| PREDICTED: retinoic acid receptor RXR-gamma [Amphimedon
queenslandica]
Length = 636
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ C++ R + A R C+ GT C V+K RN+CQ CRL+KCL GM
Sbjct: 208 HFGVLSCEACKSFFRRSVRAGA-RYACR----GTRNCSVEKHTRNRCQYCRLQKCLQTGM 262
Query: 65 NKDDAQ 70
K+ Q
Sbjct: 263 RKEAVQ 268
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C V+K RN+CQ CRL+KCL GM K+
Sbjct: 239 CSVEKHTRNRCQYCRLQKCLQTGMRKEA 266
>gi|167859601|gb|ACA04755.1| NR1 nuclear receptor [Amphimedon queenslandica]
Length = 636
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ C++ R + A R C+ GT C V+K RN+CQ CRL+KCL GM
Sbjct: 208 HFGVLSCEACKSFFRRSVRAGA-RYACR----GTRNCSVEKHTRNRCQYCRLQKCLQTGM 262
Query: 65 NKDDAQ 70
K+ Q
Sbjct: 263 RKEAVQ 268
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C V+K RN+CQ CRL+KCL GM K+
Sbjct: 239 CSVEKHTRNRCQYCRLQKCLQTGMRKEA 266
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70
CI+DK RN+CQ CR KCLNMGM ++ Q
Sbjct: 168 CIIDKRQRNRCQYCRYMKCLNMGMKREAVQ 197
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+AC + + CI+DK RN+CQ CR KCLNMGM ++
Sbjct: 160 YACRD--DRNCIIDKRQRNRCQYCRYMKCLNMGMKREA 195
>gi|332031559|gb|EGI71031.1| Protein embryonic gonad [Acromyrmex echinatior]
Length = 434
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 95 CKNG-GVCVINKKNRTACKACRLRKCLMVGMSKSGSRYGRRSNWFKIHC 142
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 101 CVINKKNRTACKACRLRKCLMVGMSKSG 128
>gi|395508412|ref|XP_003758506.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Sarcophilus
harrisii]
Length = 474
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N +C+ +C++DK RNQC+ CRL+KC
Sbjct: 78 TGKHYGASSCDGCKGFFRRSV----RKNHVYSCRFNR-QCVIDKDKRNQCRYCRLRKCFR 132
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 133 AGMKKEAVQNERDRI 147
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C++DK RNQC+ CRL+KC GM K+
Sbjct: 111 QCVIDKDKRNQCRYCRLRKCFRAGMKKEA 139
>gi|242006615|ref|XP_002424144.1| coup transcription factor, putative [Pediculus humanus corporis]
gi|212507469|gb|EEB11406.1| coup transcription factor, putative [Pediculus humanus corporis]
Length = 192
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVE 87
RN +C+ G C +D+ HRNQCQ CRLKKCL MGM ++ Q + L +
Sbjct: 112 RNLTYSCR-GNRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPSQPPGLPGLPD 170
Query: 88 LRCI 91
R I
Sbjct: 171 HRFI 174
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 124 CPIDQHHRNQCQYCRLKKCLKMGMRRE 150
>gi|115430095|ref|NP_001068579.1| hepatocyte nuclear factor 4-gamma [Danio rerio]
gi|115313265|gb|AAI24294.1| Hepatocyte nuclear factor 4, gamma [Danio rerio]
gi|182891948|gb|AAI65580.1| Hnf4g protein [Danio rerio]
Length = 444
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL KC
Sbjct: 56 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFNR----QCVVDKDKRNQCRFCRLHKCFR 110
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 111 AGMKKEAVQNERDRI 125
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL KC GM K+
Sbjct: 89 QCVVDKDKRNQCRFCRLHKCFRAGMKKEA 117
>gi|380023742|ref|XP_003695671.1| PREDICTED: knirps-related protein-like [Apis florea]
Length = 491
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 120 CKNG-GECVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHC 167
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 126 CVINKKNRTACKACRLRKCLLVGMSKSG 153
>gi|262358091|gb|ACY56690.1| HR3 nuclear receptor [Daphnia magna]
Length = 622
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 198 CVVDRVNRNRCQYCRLQKCLALGMSRDA 225
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 198 CVVDRVNRNRCQYCRLQKCLALGMSRD 224
>gi|195383602|ref|XP_002050515.1| GJ20161 [Drosophila virilis]
gi|194145312|gb|EDW61708.1| GJ20161 [Drosophila virilis]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|195120906|ref|XP_002004962.1| GI20211 [Drosophila mojavensis]
gi|193910030|gb|EDW08897.1| GI20211 [Drosophila mojavensis]
Length = 487
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRDA 120
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 40 RCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 92 QCVVDRVNRNRCQYCRLQKCLKLGMSRD 119
>gi|71987050|ref|NP_001022102.1| Protein NHR-21, isoform c [Caenorhabditis elegans]
gi|351061912|emb|CCD69791.1| Protein NHR-21, isoform c [Caenorhabditis elegans]
Length = 440
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+T C+ R I +N+ AC+ G+C V K RN C++CRLK+C+ +G
Sbjct: 32 KHYGVTACNGCKGFFRRSI----WKNRTYACRY-QGKCGVAKEQRNACRSCRLKECIKVG 86
Query: 64 MNKDDAQHLKNSLLYEFACTNLVEL 88
MN Q ++ A NLV +
Sbjct: 87 MNPRAVQGDIDTASTSSASPNLVSV 111
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C V K RN C++CRLK+C+ +GMN
Sbjct: 63 KCGVAKEQRNACRSCRLKECIKVGMN 88
>gi|1708295|sp|P49868.1|HR3_GALME RecName: Full=Probable nuclear hormone receptor HR3; Short=gHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|409272|gb|AAA83401.1| GHR3 [Galleria mellonella]
Length = 557
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 150 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 177
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 150 CVVDRVNRNRCQYCRLQKCLKLGMSRD 176
>gi|389610515|dbj|BAM18869.1| hormone receptor 3 [Papilio xuthus]
Length = 554
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 147 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 174
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 147 CVVDRVNRNRCQYCRLQKCLKLGMSRD 173
>gi|345328716|ref|XP_001513606.2| PREDICTED: mineralocorticoid receptor-like [Ornithorhynchus
anatinus]
Length = 875
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 622 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 676
Query: 65 N 65
N
Sbjct: 677 N 677
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 653 CIIDKIRRKNCPACRLQKCLQAGMNLGG 680
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G C+ G R V K H C+ + C+VDK RNQC+ CRLKKC
Sbjct: 61 TGKHYGAASCDGCK-GFFRRSVRKNHVYTCRFNRM----CVVDKDKRNQCRYCRLKKCFR 115
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 116 AGMKKEAVQNERDRI 130
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRLKKC GM K+
Sbjct: 95 CVVDKDKRNQCRYCRLKKCFRAGMKKEA 122
>gi|260656020|ref|NP_001159576.1| mineralocorticoid receptor isoform 2 [Homo sapiens]
gi|167882810|gb|ACA05924.1| nuclear receptor subfamily 3, group C, member 2 variant 2 [Homo
sapiens]
gi|239740367|gb|ACS13716.1| mineralocorticoid receptor 1 [Homo sapiens]
Length = 867
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMNLGG 672
>gi|114049537|emb|CAJ90622.1| HR3 isoform B1 [Blattella germanica]
Length = 651
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 124 CVVDRVNRNRCQYCRLQKCLRLGMSRDA 151
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 124 CVVDRVNRNRCQYCRLQKCLRLGMSRD 150
>gi|426224398|ref|XP_004006358.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor gamma [Ovis
aries]
Length = 458
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSLDSYELS-PQLEELITKVSKAHQEXFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|60654205|gb|AAX29795.1| retinoic acid receptor gamma [synthetic construct]
gi|60654353|gb|AAX29867.1| retinoic acid receptor gamma [synthetic construct]
Length = 455
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|71987054|ref|NP_001022103.1| Protein NHR-21, isoform d [Caenorhabditis elegans]
gi|351061913|emb|CCD69792.1| Protein NHR-21, isoform d [Caenorhabditis elegans]
Length = 446
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+T C+ R I +N+ AC+ G+C V K RN C++CRLK+C+ +G
Sbjct: 40 KHYGVTACNGCKGFFRRSI----WKNRTYACRY-QGKCGVAKEQRNACRSCRLKECIKVG 94
Query: 64 MNKDDAQHLKNSLLYEFACTNLVEL 88
MN Q ++ A NLV +
Sbjct: 95 MNPRAVQGDIDTASTSSASPNLVSV 119
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C V K RN C++CRLK+C+ +GMN
Sbjct: 71 KCGVAKEQRNACRSCRLKECIKVGMN 96
>gi|71987041|ref|NP_001022100.1| Protein NHR-21, isoform a [Caenorhabditis elegans]
gi|351061910|emb|CCD69789.1| Protein NHR-21, isoform a [Caenorhabditis elegans]
Length = 448
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+T C+ R I +N+ AC+ G+C V K RN C++CRLK+C+ +G
Sbjct: 40 KHYGVTACNGCKGFFRRSI----WKNRTYACRY-QGKCGVAKEQRNACRSCRLKECIKVG 94
Query: 64 MNKDDAQHLKNSLLYEFACTNLVEL 88
MN Q ++ A NLV +
Sbjct: 95 MNPRAVQGDIDTASTSSASPNLVSV 119
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C V K RN C++CRLK+C+ +GMN
Sbjct: 71 KCGVAKEQRNACRSCRLKECIKVGMN 96
>gi|348516850|ref|XP_003445950.1| PREDICTED: glucocorticoid receptor [Oreochromis niloticus]
Length = 779
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACR +KCL GM
Sbjct: 434 HYGVLTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRFRKCLMAGM 488
Query: 65 NKDDAQHLKNSL 76
N + + KN L
Sbjct: 489 NLEARKLKKNRL 500
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKSM 120
CI+DK R C ACR +KCL GMN + + +
Sbjct: 465 CIIDKIRRKNCPACRFRKCLMAGMNLEARKL 495
>gi|84627440|gb|AAI11759.1| NR3C2 protein [Homo sapiens]
Length = 867
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMNLGG 672
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CR KKCL +G
Sbjct: 78 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRFKKCLKVG 132
Query: 64 MNKD 67
M ++
Sbjct: 133 MRRE 136
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D+ HRNQCQ CR KKCL +GM ++
Sbjct: 110 CPIDQHHRNQCQYCRFKKCLKVGMRRE 136
>gi|25150325|ref|NP_741729.1| Protein NHR-40, isoform a [Caenorhabditis elegans]
gi|10197993|gb|AAG15131.1| nuclear receptor NHR-40 [Caenorhabditis elegans]
gi|351063621|emb|CCD71833.1| Protein NHR-40, isoform a [Caenorhabditis elegans]
Length = 439
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 14 CQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLK 73
C+ R +V+K Q CQ +G C+V K+ R C++CRLKKC +MGM+ QH +
Sbjct: 35 CKTFFRRALVNK----QTFTCQF-SGDCVVGKSVRCVCRSCRLKKCFDMGMDPKAIQHDR 89
Query: 74 NSLLY 78
+ + Y
Sbjct: 90 DKIRY 94
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
C+V K+ R C++CRLKKC +MGM+
Sbjct: 57 CVVGKSVRCVCRSCRLKKCFDMGMD 81
>gi|262358093|gb|ACY56691.1| HR3 nuclear receptor [Daphnia pulex]
Length = 636
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 211 CVVDRVNRNRCQYCRLQKCLALGMSRDA 238
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 211 CVVDRVNRNRCQYCRLQKCLALGMSRD 237
>gi|195539517|ref|NP_001124228.1| retinoic acid receptor gamma [Bos taurus]
gi|158455128|gb|AAI23810.2| RARG protein [Bos taurus]
gi|296487919|tpg|DAA30032.1| TPA: retinoic acid receptor, gamma [Bos taurus]
Length = 458
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSLDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|410956761|ref|XP_003985006.1| PREDICTED: mineralocorticoid receptor isoform 2 [Felis catus]
Length = 867
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMNLGG 672
>gi|354490219|ref|XP_003507257.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Cricetulus
griseus]
gi|344239273|gb|EGV95376.1| Retinoic acid receptor gamma [Cricetulus griseus]
Length = 458
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGPPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|296211802|ref|XP_002752564.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Callithrix
jacchus]
Length = 454
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|15489203|gb|AAH13709.1| Retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGLPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|359321413|ref|XP_003432094.2| PREDICTED: mineralocorticoid receptor isoform 1 [Canis lupus
familiaris]
Length = 864
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 611 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 665
Query: 65 N 65
N
Sbjct: 666 N 666
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 642 CIIDKIRRKNCPACRLQKCLQAGMNLGG 669
>gi|307213125|gb|EFN88647.1| Protein embryonic gonad [Harpegnathos saltator]
Length = 435
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
C+ G G C+++K +R C+ACRL+KCL +GM+K +++ + S ++ C
Sbjct: 95 CKNG-GVCVINKKNRTACKACRLRKCLMVGMSKSGSRYGRRSNWFKIHC 142
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL +GM+K G
Sbjct: 101 CVINKKNRTACKACRLRKCLMVGMSKSG 128
>gi|301763182|ref|XP_002917012.1| PREDICTED: mineralocorticoid receptor-like isoform 2 [Ailuropoda
melanoleuca]
Length = 867
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMNLGG 672
>gi|114596329|ref|XP_001150320.1| PREDICTED: mineralocorticoid receptor isoform 1 [Pan troglodytes]
gi|397489804|ref|XP_003815906.1| PREDICTED: mineralocorticoid receptor isoform 2 [Pan paniscus]
Length = 867
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R V+ H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRA-VEGQHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 668
Query: 65 N 65
N
Sbjct: 669 N 669
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI+DK R C ACRL+KCL GMN G
Sbjct: 645 CIIDKIRRKNCPACRLQKCLQAGMNLGG 672
>gi|426372715|ref|XP_004053263.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 454
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|61363224|gb|AAX42356.1| retinoic acid receptor gamma [synthetic construct]
Length = 454
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKKEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|4506423|ref|NP_000957.1| retinoic acid receptor gamma isoform 1 [Homo sapiens]
gi|297262495|ref|XP_001087992.2| PREDICTED: retinoic acid receptor gamma isoform 1 [Macaca mulatta]
gi|332839268|ref|XP_509094.3| PREDICTED: retinoic acid receptor gamma isoform 4 [Pan troglodytes]
gi|397522007|ref|XP_003831072.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Pan paniscus]
gi|402886144|ref|XP_003906498.1| PREDICTED: retinoic acid receptor gamma isoform 1 [Papio anubis]
gi|133498|sp|P13631.1|RARG_HUMAN RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|190868|gb|AAA63254.1| retinoic acid receptor-gamma [Homo sapiens]
gi|190872|gb|AAA60254.1| retinoic acid receptor-gamma-1 [Homo sapiens]
gi|306887|gb|AAA52692.1| retinoic acid receptor gamma [Homo sapiens]
gi|60820075|gb|AAX36522.1| retinoic acid receptor gamma [synthetic construct]
gi|61363715|gb|AAX42433.1| retinoic acid receptor gamma [synthetic construct]
gi|62739477|gb|AAH93729.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|62739943|gb|AAH93727.1| Retinoic acid receptor, gamma [Homo sapiens]
gi|119617083|gb|EAW96677.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|119617084|gb|EAW96678.1| retinoic acid receptor, gamma, isoform CRA_b [Homo sapiens]
gi|158254608|dbj|BAF83277.1| unnamed protein product [Homo sapiens]
gi|216409686|dbj|BAH02280.1| retinoic acid receptor gamma [Homo sapiens]
gi|261858290|dbj|BAI45667.1| retinoic acid receptor, gamma [synthetic construct]
gi|325495467|gb|ADZ17339.1| retinoic acid nuclear receptor gamma variant 1 [Homo sapiens]
gi|355564276|gb|EHH20776.1| Retinoic acid receptor gamma [Macaca mulatta]
gi|355786135|gb|EHH66318.1| Retinoic acid receptor gamma [Macaca fascicularis]
gi|410226724|gb|JAA10581.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410260688|gb|JAA18310.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300276|gb|JAA28738.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410352705|gb|JAA42956.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|321476560|gb|EFX87520.1| hypothetical protein DAPPUDRAFT_311954 [Daphnia pulex]
Length = 616
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 228 CVVDRVNRNRCQYCRLQKCLALGMSRDA 255
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 228 CVVDRVNRNRCQYCRLQKCLALGMSRD 254
>gi|47225409|emb|CAG11892.1| unnamed protein product [Tetraodon nigroviridis]
Length = 503
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDGKS 119
C +D+A RN+CQ CRL+KCL GM++DG+S
Sbjct: 50 CQIDRASRNRCQHCRLQKCLAQGMSRDGES 79
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C +D+A RN+CQ CRL+KCL GM++D
Sbjct: 50 CQIDRASRNRCQHCRLQKCLAQGMSRD 76
>gi|112181202|ref|NP_035374.3| retinoic acid receptor gamma isoform 1 [Mus musculus]
gi|166899090|sp|P18911.3|RARG_MOUSE RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
gi|53909|emb|CAA33845.1| Retinoic acid receptor gamma [Mus musculus]
gi|15277832|gb|AAH12923.1| Retinoic acid receptor, gamma [Mus musculus]
gi|148672049|gb|EDL03996.1| retinoic acid receptor, gamma [Mus musculus]
Length = 458
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|307171696|gb|EFN63431.1| Knirps-related protein [Camponotus floridanus]
Length = 406
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 29 NQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
N C+ G G C+++K +R C+ACRL+KCL++GM+K +++ + S ++ C
Sbjct: 37 NSIAECKNG-GECVINKKNRTACKACRLRKCLHVGMSKSGSRYGRRSNWFKIHC 89
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+++K +R C+ACRL+KCL++GM+K G
Sbjct: 48 CVINKKNRTACKACRLRKCLHVGMSKSG 75
>gi|68132010|gb|AAY85271.1| HNF4gamma, partial [Danio rerio]
Length = 413
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R I K+H C+ + +C+VDK RNQC+ CRL KC
Sbjct: 37 TGKHYGASSCDGCKGFFRRSI-RKSHVYSCRFNR----QCVVDKDKRNQCRFCRLHKCFR 91
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 92 AGMKKEAVQNERDRI 106
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRL KC GM K+
Sbjct: 70 QCVVDKDKRNQCRFCRLHKCFRAGMKKEA 98
>gi|47214408|emb|CAG00249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 404
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 29 NQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
N AC+ G+C++DK RNQCQ CR KKC+ +GM D
Sbjct: 47 NPTYACKY-QGKCVIDKVTRNQCQECRFKKCIAVGMATD 84
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+C++DK RNQCQ CR KKC+ +GM D
Sbjct: 57 KCVIDKVTRNQCQECRFKKCIAVGMATD 84
>gi|380028730|ref|XP_003698042.1| PREDICTED: probable nuclear hormone receptor HR3-like [Apis florea]
Length = 640
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 103 CVVDRVNRNRCQYCRLQKCLRLGMSRDA 130
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 103 CVVDRVNRNRCQYCRLQKCLRLGMSRD 129
>gi|339238287|ref|XP_003380698.1| orphan steroid hormone receptor 2 [Trichinella spiralis]
gi|316976384|gb|EFV59686.1| orphan steroid hormone receptor 2 [Trichinella spiralis]
Length = 517
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G T C+ +R I R + G+ C V K HRN+CQ CRLKKCL MG
Sbjct: 23 RHYGATSCEGCKGFFKRSI-----RKKIGYVCRGSRDCPVTKFHRNRCQYCRLKKCLAMG 77
Query: 64 MNKDDAQ 70
M A+
Sbjct: 78 MRTVQAE 84
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
C V K HRN+CQ CRLKKCL MGM
Sbjct: 55 CPVTKFHRNRCQYCRLKKCLAMGM 78
>gi|195502272|ref|XP_002098150.1| GE10213 [Drosophila yakuba]
gi|194184251|gb|EDW97862.1| GE10213 [Drosophila yakuba]
Length = 278
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R AC A G C+VDKA RN C +CR ++CL +GMN Q
Sbjct: 37 RGSTYACIALAGNCVVDKARRNWCPSCRFQRCLVVGMNAAAVQE 80
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMN 114
+AC L C+VDKA RN C +CR ++CL +GMN
Sbjct: 41 YACIALAG-NCVVDKARRNWCPSCRFQRCLVVGMN 74
>gi|112983248|ref|NP_001037012.1| hormone receptor 3 [Bombyx mori]
gi|14484879|gb|AAK62804.1|AF073927_1 nuclear receptor HR3 isoform A [Bombyx mori]
Length = 490
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 84 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 111
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 84 CVVDRVNRNRCQYCRLQKCLKLGMSRD 110
>gi|198385545|gb|ACH86113.1| molt-regulating transcription factor HaHR3 [Helicoverpa armigera]
Length = 556
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 149 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 176
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 149 CVVDRVNRNRCQYCRLQKCLKLGMSRD 175
>gi|39938474|gb|AAK14384.2| molt-regulating transcription factor HHR3 [Helicoverpa armigera]
Length = 556
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 149 CVVDRVNRNRCQYCRLQKCLKLGMSRDA 176
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 41 CIVDKAHRNQCQACRLKKCLNMGMNKD 67
C+VD+ +RN+CQ CRL+KCL +GM++D
Sbjct: 149 CVVDRVNRNRCQYCRLQKCLKLGMSRD 175
>gi|30315966|sp|Q8VII8.2|MCR_MOUSE RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
Length = 978
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + H C AG CI+DK R C ACRL+KCL GM
Sbjct: 614 HYGVVTCGSCKVFFKRAV---EHNYLC----AGRNDCIIDKIRRKNCPACRLQKCLQAGM 666
Query: 65 N 65
N
Sbjct: 667 N 667
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 643 CIIDKIRRKNCPACRLQKCLQAGMN 667
>gi|403296782|ref|XP_003939274.1| PREDICTED: retinoic acid receptor gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 454
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G++ C+ R I +N C CI++K RN+CQ CRL+KC +GM
Sbjct: 101 HYGVSSCEGCKGFFRRSI----QKNMVYTCHRDKN-CIINKVTRNRCQYCRLQKCFEVGM 155
Query: 65 NKDDAQHLKNSLL-----------YEFACTNLVELRCIVDKAHRNQCQA-CRLKK 107
+K+ ++ +N YE + L EL V KAH+ + C+L K
Sbjct: 156 SKEAVRNDRNKKKKEVKEEGSPDSYELS-PQLEELITKVSKAHQETFPSLCQLGK 209
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 132 CIINKVTRNRCQYCRLQKCFEVGMSKEA 159
>gi|194899033|ref|XP_001979067.1| GG13368 [Drosophila erecta]
gi|190650770|gb|EDV48025.1| GG13368 [Drosophila erecta]
Length = 279
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 28 RNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
R AC A G C+VDKA RN C +CR ++CL +GMN Q
Sbjct: 37 RGSSYACIALAGNCVVDKARRNWCPSCRFQRCLAVGMNAAAVQE 80
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMN 114
+AC L C+VDKA RN C +CR ++CL +GMN
Sbjct: 40 SYACIALAG-NCVVDKARRNWCPSCRFQRCLAVGMN 74
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.133 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,890,387,894
Number of Sequences: 23463169
Number of extensions: 67192110
Number of successful extensions: 156018
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6564
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 136704
Number of HSP's gapped (non-prelim): 16041
length of query: 120
length of database: 8,064,228,071
effective HSP length: 87
effective length of query: 33
effective length of database: 6,022,932,368
effective search space: 198756768144
effective search space used: 198756768144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)