BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13208
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 76 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 113
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 83 CPVDKAHRNQCQACRLKKCLQAGMNQDA 110
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 75 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 112
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 82 CPVDKAHRNQCQACRLKKCLQAGMNQDA 109
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 34 CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
CQ G G C VDKAHRNQCQACRLKKCL GMN+D Q+
Sbjct: 83 CQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 120
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C VDKAHRNQCQACRLKKCL GMN+D
Sbjct: 90 CPVDKAHRNQCQACRLKKCLQAGMNQDA 117
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G+ G C VDK HRNQC+ACRLKKCL +
Sbjct: 37 KHYGVYACDGCSGFFKRSI----RRNRIYLCKSGSQGGCPVDKTHRNQCRACRLKKCLEV 92
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 93 NMNKDAVQH 101
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 61 YLCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGT-GRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I RN+ C++G G C VDK HRNQC+ACRLKKCL +
Sbjct: 26 KHYGVYACDGCSGFFKRSI----RRNRSYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEV 81
Query: 63 GMNKDDAQH 71
MNKD QH
Sbjct: 82 NMNKDAVQH 90
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 80 FACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+ C + + C VDK HRNQC+ACRLKKCL + MNKD
Sbjct: 50 YVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQA-GTGRCIVDKAHRNQCQACRLKKCLNM 62
+H G+ C +R I R++ C++ G C+VDK HRNQC+ACRL+KC +
Sbjct: 44 KHYGIYACDGCAGFFKRSI----RRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEV 99
Query: 63 GMNKDDAQH 71
GMNKD QH
Sbjct: 100 GMNKDAVQH 108
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 79 EFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C + + C+VDK HRNQC+ACRL+KC +GMNKD
Sbjct: 67 QYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDA 105
>sp|Q9XVV3|NHR67_CAEEL Nuclear hormone receptor family member nhr-67 OS=Caenorhabditis
elegans GN=nhr-67 PE=1 SV=1
Length = 416
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G+C VDK HRNQC+ACRL+KCL +GMNKD QH
Sbjct: 66 GQCKVDKTHRNQCRACRLRKCLEIGMNKDAVQH 98
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 79 EFACTNL---VELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
++ C N E +C VDK HRNQC+ACRL+KCL +GMNKD
Sbjct: 54 QYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDA 95
>sp|P16376|7UP2_DROME Steroid receptor seven-up, isoform A OS=Drosophila melanogaster
GN=svp PE=2 SV=3
Length = 746
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN +C+ G+ C +D+ HRNQCQ CRLKKCL MG
Sbjct: 210 KHYGQFTCEGCKSFFKRSV----RRNLTYSCR-GSRNCPIDQHHRNQCQYCRLKKCLKMG 264
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 265 MRREAVQ 271
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL MGM ++
Sbjct: 242 CPIDQHHRNQCQYCRLKKCLKMGMRREA 269
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>sp|O45521|NH111_CAEEL Nuclear hormone receptor family member nhr-111 OS=Caenorhabditis
elegans GN=nhr-111 PE=1 SV=2
Length = 311
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 12 PTCQ--AGTERCIVDKAHRNQ-CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDD 68
PTC +G R V RN+ C G G C++DKA+RN+C++CR+KKC GMNK+
Sbjct: 57 PTCFGCSGFFRRTV----RNKLVHGCWNGDGNCVIDKANRNRCKSCRIKKCFKKGMNKNA 112
Query: 69 AQHLKNSLLYEFACTNLVELR 89
Q + S Y L R
Sbjct: 113 VQPERTSHSYTVEYVELPSFR 133
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C++DKA+RN+C++CR+KKC GMNK+
Sbjct: 85 CVIDKANRNRCKSCRIKKCFKKGMNKNA 112
>sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens
GN=NR2C2 PE=1 SV=1
Length = 596
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRSNQD-CIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R + +N +C++ + CI++K HRN+CQ CRLKKCL MG
Sbjct: 127 RHYGAVSCEGCKGFFKRSV----RKNLTYSCRS-SQDCIINKHHRNRCQFCRLKKCLEMG 181
Query: 64 MNKDDAQ 70
M + Q
Sbjct: 182 MKMESVQ 188
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGM 113
CI++K HRN+CQ CRLKKCL MGM
Sbjct: 159 CIINKHHRNRCQFCRLKKCLEMGM 182
>sp|Q91573|MCR_XENLA Mineralocorticoid receptor (Fragment) OS=Xenopus laevis GN=nr3c2
PE=2 SV=1
Length = 612
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 HDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGM 64
H G+ +C+ +R + K R C AG CI+DK R C ACRL+KCL GM
Sbjct: 240 HYGVVTCGSCKVFFKRAVEGKCSRQHSYLC-AGRNDCIIDKIRRKNCPACRLQKCLQAGM 298
Query: 65 N 65
N
Sbjct: 299 N 299
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMN 114
CI+DK R C ACRL+KCL GMN
Sbjct: 275 CIIDKIRRKNCPACRLQKCLQAGMN 299
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRTI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>sp|Q8VIJ4|NR2C1_RAT Nuclear receptor subfamily 2 group C member 1 OS=Rattus norvegicus
GN=Nr2c1 PE=2 SV=1
Length = 590
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CIINKHHRNRCQYCRLQRCIAFGMKQD 169
>sp|Q95K90|NR2C1_MACFA Nuclear receptor subfamily 2 group C member 1 OS=Macaca
fascicularis GN=NR2C1 PE=2 SV=1
Length = 603
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>sp|Q5RCZ5|NR2C1_PONAB Nuclear receptor subfamily 2 group C member 1 OS=Pongo abelii
GN=NR2C1 PE=2 SV=1
Length = 601
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>sp|A0JNE3|NR2C1_BOVIN Nuclear receptor subfamily 2 group C member 1 OS=Bos taurus
GN=NR2C1 PE=2 SV=1
Length = 608
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 124 RHYGEVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 178
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 179 MKQDSVQ 185
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 156 CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>sp|P13056|NR2C1_HUMAN Nuclear receptor subfamily 2 group C member 1 OS=Homo sapiens
GN=NR2C1 PE=1 SV=2
Length = 603
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ CI++K HRN+CQ CRL++C+ G
Sbjct: 123 RHYGAVTCEGCKGFFKRSI----RKNLVYSCR-GSKDCIINKHHRNRCQYCRLQRCIAFG 177
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 178 MKQDSVQ 184
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
CI++K HRN+CQ CRL++C+ GM +D
Sbjct: 155 CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 67 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 121
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 122 MRKEAVQ 128
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 99 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 126
>sp|Q505F1|NR2C1_MOUSE Nuclear receptor subfamily 2 group C member 1 OS=Mus musculus
GN=Nr2c1 PE=1 SV=3
Length = 590
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N +C+ G+ C+++K HRN+CQ CRL++C+ G
Sbjct: 111 RHYGAITCEGCKGFFKRSI----RKNLVYSCR-GSKDCVINKHHRNRCQYCRLQRCIAFG 165
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 166 MKQDSVQ 172
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K HRN+CQ CRL++C+ GM +D
Sbjct: 143 CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C++ +R I RN C++ C +D+ HRNQCQ CRLKKC +G
Sbjct: 66 KHYGVFTCEGCKSFFKRSI----RRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRVG 120
Query: 64 MNKDDAQ 70
M K+ Q
Sbjct: 121 MRKEAVQ 127
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKC +GM K+
Sbjct: 98 CQIDQHHRNQCQYCRLKKCFRVGMRKEA 125
>sp|P41235|HNF4A_HUMAN Hepatocyte nuclear factor 4-alpha OS=Homo sapiens GN=HNF4A PE=1
SV=3
Length = 474
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 86 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 140
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 141 MRREAVQ 147
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 44 DKAHRNQCQACRLKKCLNMGMNKDDAQH------------LKNSLLYEFACTNLVELRCI 91
DK +N Q+ + +C+ G +K +H K S+ T C
Sbjct: 61 DKGSQNSGQSQQHIECVVCG-DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCP 119
Query: 92 VDKAHRNQCQACRLKKCLNMGMNKDG 117
+D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 120 IDQHHRNQCQYCRLKKCLKVGMRREA 145
>sp|P10734|KNIR_DROME Zygotic gap protein knirps OS=Drosophila melanogaster GN=kni PE=1
SV=1
Length = 429
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 82 CTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C N E +CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 42 CKN--EGKCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 85 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 139
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 140 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 170
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 99 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 144
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 96 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 150
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 151 MRREAVQ 157
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 128 CPIDQHHRNQCQYCRLKKCLKVGMRREA 155
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+ G C +D+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLSYTCR-GNRDCPIDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 119 MRREAVQ 125
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRREA 123
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 97 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 151
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 152 MRREAVQ 158
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 129 CPIDQHHRNQCQYCRLKKCLKVGMRREA 156
>sp|Q24142|HR78_DROME Nuclear hormone receptor HR78 OS=Drosophila melanogaster GN=Hr78
PE=1 SV=2
Length = 601
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I K QC+ G C V K HRN+CQ CRL+KCL G
Sbjct: 62 RHYGAISCEGCKGFFKRSI-RKQLGYQCR----GAMNCEVTKHHRNRCQFCRLQKCLASG 116
Query: 64 MNKDDAQHLKNSLL 77
M D QH + ++
Sbjct: 117 MRSDSVQHERKPIV 130
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 88 LRCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+ C V K HRN+CQ CRL+KCL GM D
Sbjct: 92 MNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 95 KHYGQFTCEGCKSFFKRSV----RRNLTYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 149
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 150 MRREAVQ 156
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 127 CPIDQHHRNQCQYCRLKKCLKVGMRREA 154
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C VD+ HRNQCQ CRLKKCL +G
Sbjct: 64 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPVDQHHRNQCQYCRLKKCLKVG 118
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 119 MRREAVQ 125
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C VD+ HRNQCQ CRLKKCL +GM ++
Sbjct: 78 FKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREA 123
>sp|P79926|HNF4B_XENLA Hepatocyte nuclear factor 4-beta OS=Xenopus laevis GN=hnf4b PE=2
SV=1
Length = 446
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ R + +N AC+ + +CIVDK RNQC+ CRL+KC
Sbjct: 58 TGKHYGASSCDGCKGFFRRSV----RKNHVYACRF-SRQCIVDKDKRNQCRYCRLRKCFR 112
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 113 AGMKKEAVQNERDRI 127
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CIVDK RNQC+ CRL+KC GM K+
Sbjct: 91 QCIVDKDKRNQCRYCRLRKCFRAGMKKEA 119
>sp|Q24753|KNIR_DROVI Zygotic gap protein knirps OS=Drosophila virilis GN=kni PE=3 SV=1
Length = 481
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G+CI+DK +R C+ACRL+KC N+GM+K +++ + S ++ C
Sbjct: 46 GKCIIDKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHC 89
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+CI+DK +R C+ACRL+KC N+GM+K G
Sbjct: 47 KCIIDKKNRTTCKACRLRKCYNVGMSKGG 75
>sp|P13054|KNRL_DROME Knirps-related protein OS=Drosophila melanogaster GN=knrl PE=2
SV=1
Length = 647
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 39 GRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFAC 82
G CI++K +R C+ACRLKKCL +GM+K +++ + S ++ C
Sbjct: 55 GECIINKKNRTACKACRLKKCLMVGMSKSGSRYGRRSNWFKIHC 98
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K +R C+ACRLKKCL +GM+K G
Sbjct: 57 CIINKKNRTACKACRLKKCLMVGMSKSG 84
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQHLK----NSLLYEFACTNLVELRC 90
M ++ Q + +FA TN L C
Sbjct: 144 MRREAVQRGRMPPTQPTHGQFALTNGDPLNC 174
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>sp|Q6GN21|N2C1A_XENLA Nuclear receptor subfamily 2 group C member 1-A OS=Xenopus laevis
GN=nr2c1-a PE=2 SV=1
Length = 637
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+ C+++K +RN+CQ CRL++C+++G
Sbjct: 162 RHYGAVTCEGCKGFFKRSI----RKNLVYTCR-GSKDCVINKHYRNRCQYCRLQRCMSLG 216
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 217 MKQDSVQ 223
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K +RN+CQ CRL++C+++GM +D
Sbjct: 194 CVINKHYRNRCQYCRLQRCMSLGMKQD 220
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G C++ +R + RN C+A C +D+ HRNQCQ CRLKKCL +G
Sbjct: 89 KHYGQFTCEGCKSFFKRSV----RRNLSYTCRANRN-CPIDQHHRNQCQYCRLKKCLKVG 143
Query: 64 MNKDDAQ 70
M ++ Q
Sbjct: 144 MRREAVQ 150
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 72 LKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
K S+ + T C +D+ HRNQCQ CRLKKCL +GM ++
Sbjct: 103 FKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 148
>sp|P49698|HNF4A_MOUSE Hepatocyte nuclear factor 4-alpha OS=Mus musculus GN=Hnf4a PE=1
SV=2
Length = 474
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>sp|P22449|HNF4A_RAT Hepatocyte nuclear factor 4-alpha OS=Rattus norvegicus GN=Hnf4a
PE=1 SV=3
Length = 474
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H C+ + +C+VDK RNQC+ CRLKKC
Sbjct: 68 TGKHYGASSCDGCK-GFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFR 122
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 123 AGMKKEAVQNERDRI 137
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
+C+VDK RNQC+ CRLKKC GM K+
Sbjct: 101 QCVVDKDKRNQCRYCRLKKCFRAGMKKEA 129
>sp|Q66J63|N2C1B_XENLA Nuclear receptor subfamily 2 group C member 1-B OS=Xenopus laevis
GN=nr2c1-b PE=2 SV=1
Length = 637
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
RH G C+ +R I +N C+ G+ C+++K +RN+CQ CRL++C+++G
Sbjct: 162 RHYGAVTCEGCKGFFKRSI----RKNLIYTCR-GSKDCVINKHYRNRCQYCRLQRCISLG 216
Query: 64 MNKDDAQ 70
M +D Q
Sbjct: 217 MKQDSVQ 223
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C+++K +RN+CQ CRL++C+++GM +D
Sbjct: 194 CVINKHYRNRCQYCRLQRCISLGMKQD 220
>sp|P49866|HNF4_DROME Transcription factor HNF-4 homolog OS=Drosophila melanogaster
GN=Hnf4 PE=2 SV=2
Length = 666
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLN 61
T +H G + C+ G R V K H+ C+ + C+VDK RNQC+ CRL+KC
Sbjct: 112 TGKHYGASSCDGCK-GFFRRSVRKNHQYTCRFAR----NCVVDKDKRNQCRYCRLRKCFK 166
Query: 62 MGMNKDDAQHLKNSL 76
GM K+ Q+ ++ +
Sbjct: 167 AGMKKEAVQNERDRI 181
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C+VDK RNQC+ CRL+KC GM K+
Sbjct: 146 CVVDKDKRNQCRYCRLRKCFKAGMKKEA 173
>sp|O62389|NHR61_CAEEL Nuclear hormone receptor family member nhr-61 OS=Caenorhabditis
elegans GN=nhr-61 PE=2 SV=2
Length = 412
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 4 RHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMG 63
+H G+ C+ R I +N+ AC+ G G+C+V K RN C++CRL +CL++G
Sbjct: 40 KHYGVNACNGCKGFFRRSI----WKNRTYACRHG-GKCLVAKEQRNACRSCRLTRCLDVG 94
Query: 64 MNKDDAQ 70
MN Q
Sbjct: 95 MNPRAVQ 101
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMN 114
+C+V K RN C++CRL +CL++GMN
Sbjct: 71 KCLVAKEQRNACRSCRLTRCLDVGMN 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.133 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,393,965
Number of Sequences: 539616
Number of extensions: 1720568
Number of successful extensions: 5303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4025
Number of HSP's gapped (non-prelim): 1075
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)